Query psy17980
Match_columns 252
No_of_seqs 120 out of 768
Neff 4.3
Searched_HMMs 46136
Date Fri Aug 16 19:16:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17980.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17980hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF12781 AAA_9: ATP-binding dy 100.0 6.5E-45 1.4E-49 323.1 12.7 156 4-252 54-209 (228)
2 KOG3595|consensus 99.9 2.6E-25 5.7E-30 237.6 15.6 161 1-252 1122-1282(1395)
3 COG5245 DYN1 Dynein, heavy cha 99.4 2.6E-12 5.6E-17 137.9 10.6 156 5-252 2503-2658(3164)
4 PF03028 Dynein_heavy: Dynein 93.3 0.6 1.3E-05 47.8 10.1 106 5-216 145-253 (707)
5 PHA02244 ATPase-like protein 77.4 10 0.00022 37.4 7.7 51 153-204 210-270 (383)
6 TIGR02640 gas_vesic_GvpN gas v 67.5 28 0.00061 31.3 7.8 49 157-205 144-196 (262)
7 PHA00097 K protein K 46.3 9.4 0.0002 27.8 0.8 33 215-247 18-50 (56)
8 KOG1899|consensus 45.1 28 0.00062 36.8 4.2 43 189-237 153-195 (861)
9 PRK07003 DNA polymerase III su 44.6 66 0.0014 34.9 6.9 65 160-225 145-209 (830)
10 PF04568 IATP: Mitochondrial A 42.8 38 0.00082 27.5 3.8 42 195-239 58-99 (100)
11 PF12283 Protein_K: Bacterioph 39.6 17 0.00037 26.6 1.2 33 215-247 18-50 (56)
12 PF09340 NuA4: Histone acetylt 36.5 83 0.0018 24.2 4.7 38 213-251 6-43 (80)
13 COG5271 MDN1 AAA ATPase contai 35.0 2.3E+02 0.005 34.8 9.4 73 160-235 678-755 (4600)
14 TIGR03752 conj_TIGR03752 integ 29.0 1.2E+02 0.0027 30.8 5.7 39 201-239 101-139 (472)
15 PF05377 FlaC_arch: Flagella a 26.5 1.9E+02 0.004 21.3 4.8 38 207-244 5-42 (55)
16 PF07829 Toxin_14: Alpha-A con 26.4 21 0.00046 22.3 -0.1 9 73-81 5-13 (26)
17 PF09602 PhaP_Bmeg: Polyhydrox 23.3 1.3E+02 0.0029 26.6 4.2 56 194-250 27-82 (165)
18 PF00943 Alpha_E2_glycop: Alph 21.9 45 0.00097 33.2 1.2 50 150-199 260-313 (403)
19 TIGR02902 spore_lonB ATP-depen 20.6 3.5E+02 0.0075 27.4 7.2 64 161-224 230-293 (531)
No 1
>PF12781 AAA_9: ATP-binding dynein motor region D5; PDB: 3VKG_A 3VKH_C 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=100.00 E-value=6.5e-45 Score=323.14 Aligned_cols=156 Identities=51% Similarity=0.916 Sum_probs=140.2
Q ss_pred CCCceEeeCCChhHHHHHHHHHHcCCeEEEecCCCCcCccchhhhhhhhhcCCCCCccccchhhhhcccccchhhhhccc
Q psy17980 4 PNGLKILKLTDSTYMRTMEACVRLGLPVLLEDVGETLDPALGPILLKQTYTKGKTPRRSYADQAYIHGMVFTNRACKMTK 83 (252)
Q Consensus 4 ~~~l~~~~~~~~~~~~~~e~~i~~G~~~lie~~~e~~dp~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (252)
++++.|+++++++|++++|+|+|+|.|||||||+|.+||+|+|+|.|++++
T Consensus 54 ~~~l~v~~~~~~~~~~~le~air~G~~llIe~v~e~~dp~l~plL~k~~~~----------------------------- 104 (228)
T PF12781_consen 54 KNDLEVTSFSDSNFLKQLENAIRFGKPLLIENVGESLDPILDPLLRKNIIK----------------------------- 104 (228)
T ss_dssp CCCEEEEETTSTCHHHHHHHHHHCT-EEEEC-GCSCHHCTCHHHHTTT-EE-----------------------------
T ss_pred hhcccccccchHhHHHHHHHHHHcCCeeeecccccccChhhhhhhcchhcc-----------------------------
Confidence 467999999999999999999999999999999999999999999999887
Q ss_pred cccchhhhhhhhhhhccCCCCCcccccccccccccCccccccccCCCCCCCCCCCCCcccCCCCCeEEEEeCCeeeeeCC
Q psy17980 84 GFLSVCFLSEIKIWTRNSHHGSLFYDETRYCALSEGGHILFSLCTSGPHSPPMNLTNFFYPPSGGRTLIKLGDTVVDYDP 163 (252)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~veynp 163 (252)
+| + +|++||+.|+|+|
T Consensus 105 --------------------------------------------------------------~g-~-~i~igd~~v~~~~ 120 (228)
T PF12781_consen 105 --------------------------------------------------------------SG-K-FIKIGDKEVDYNP 120 (228)
T ss_dssp ---------------------------------------------------------------S-S-EEESSSSEEE--S
T ss_pred --------------------------------------------------------------CC-c-eEEecCeEEEeec
Confidence 32 3 6899999999999
Q ss_pred CceEEEeecCCCCCCChhhcceeEEEEeeeChhhHHHHHHHHHHhhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17980 164 KFRLYLTTKLPNPHYLPETCIQIGLINFTVTSSGLEEQLMADVVRLERPDLEQERNQVIVTMNKDKSMLKEIEDNILRLL 243 (252)
Q Consensus 164 nFRLYLtTKL~nPhy~PEV~SkvTVINFTVT~eGLEeQLLsiVV~~ErPELEeqR~eLike~ae~K~~Lk~LED~LL~~L 243 (252)
+|||||+|+++||||+|+++++|++|||++|++|||+|||+.+|+.|+|+||++|.+|+++.+++|.+|+++|++||+.|
T Consensus 121 ~FrL~L~T~~~~p~~~pe~~s~vtviNFtvt~~gLe~qll~~vv~~e~PeLe~~r~~L~~~~~~~k~~L~~lEd~lL~~L 200 (228)
T PF12781_consen 121 NFRLYLTTKLPNPHYPPEVSSKVTVINFTVTQEGLEDQLLSIVVKHERPELEEQRNELLKEIAENKIQLKELEDQLLELL 200 (228)
T ss_dssp S-EEEEEESSTTSHHHHHHHHCSEEEE----CHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHC
T ss_pred cceEEEeecCCCCCCChhhhceeeEEEEEecHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCC
Q psy17980 244 FTSEGEILA 252 (252)
Q Consensus 244 S~S~g~il~ 252 (252)
++++|+||.
T Consensus 201 s~s~g~iLe 209 (228)
T PF12781_consen 201 SNSEGNILE 209 (228)
T ss_dssp CCTSSCCCC
T ss_pred HhCCCCccC
Confidence 999999985
No 2
>KOG3595|consensus
Probab=99.93 E-value=2.6e-25 Score=237.63 Aligned_cols=161 Identities=54% Similarity=0.908 Sum_probs=156.8
Q ss_pred CCCCCCceEeeCCChhHHHHHHHHHHcCCeEEEecCCCCcCccchhhhhhhhhcCCCCCccccchhhhhcccccchhhhh
Q psy17980 1 MESPNGLKILKLTDSTYMRTMEACVRLGLPVLLEDVGETLDPALGPILLKQTYTKGKTPRRSYADQAYIHGMVFTNRACK 80 (252)
Q Consensus 1 ~~~~~~l~~~~~~~~~~~~~~e~~i~~G~~~lie~~~e~~dp~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (252)
+++.|++.+++++++.|++.+|+|+++|.|++++|++|.+||+|+|++.+++++
T Consensus 1122 ~~~~~~~~~i~~~~~~~l~~le~a~~~g~~il~~~~~e~~d~~l~~ll~~~~~~-------------------------- 1175 (1395)
T KOG3595|consen 1122 KESENKLQVISFNEKEFLRQLENALRFGEPVLIEDVNEELDPALEPLLLKETFK-------------------------- 1175 (1395)
T ss_pred hhhhcccceeeccchhHHHHHHhHhccCCceeccchhhhhchhhhhhcccceee--------------------------
Confidence 356789999999999999999999999999999999999999999999999998
Q ss_pred ccccccchhhhhhhhhhhccCCCCCcccccccccccccCccccccccCCCCCCCCCCCCCcccCCCCCeEEEEeCCeeee
Q psy17980 81 MTKGFLSVCFLSEIKIWTRNSHHGSLFYDETRYCALSEGGHILFSLCTSGPHSPPMNLTNFFYPPSGGRTLIKLGDTVVD 160 (252)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ve 160 (252)
.||+..+++||+.++
T Consensus 1176 -----------------------------------------------------------------~g~~~~~~~gd~~~~ 1190 (1395)
T KOG3595|consen 1176 -----------------------------------------------------------------QGGRVLIKLGDKEID 1190 (1395)
T ss_pred -----------------------------------------------------------------ccCeEeeecCceeee
Confidence 788999999999999
Q ss_pred eCCCceEEEeecCCCCCCChhhcceeEEEEeeeChhhHHHHHHHHHHhhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17980 161 YDPKFRLYLTTKLPNPHYLPETCIQIGLINFTVTSSGLEEQLMADVVRLERPDLEQERNQVIVTMNKDKSMLKEIEDNIL 240 (252)
Q Consensus 161 ynpnFRLYLtTKL~nPhy~PEV~SkvTVINFTVT~eGLEeQLLsiVV~~ErPELEeqR~eLike~ae~K~~Lk~LED~LL 240 (252)
++++|++|++|+++||||.|+++++++++||++|..++++|+|+.++..|+|+++++|..|+++.++++.+|+++|+.+|
T Consensus 1191 ~~~~f~~~~~t~~~~~~~~p~~~~~~~~v~f~~t~~~l~~qll~~v~~~e~~~~~~~~~~l~~~~~~~~~~lk~le~~lL 1270 (1395)
T KOG3595|consen 1191 LNPDFRLYITTKLRNPHYLPELSARVTLVNFTVTPSGLEDQLLGSVVAIERPDLEEERSDLIKLQAEIKRQLKELEDRLL 1270 (1395)
T ss_pred cCCCeeEEEeecccCcccChhhhhceeEEEeEechhHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCCC
Q psy17980 241 RLLFTSEGEILA 252 (252)
Q Consensus 241 ~~LS~S~g~il~ 252 (252)
+.|+.++|++++
T Consensus 1271 ~~l~~s~~~~l~ 1282 (1395)
T KOG3595|consen 1271 ERLSSSEGNILE 1282 (1395)
T ss_pred HHHhcccCcccc
Confidence 999999999874
No 3
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=99.36 E-value=2.6e-12 Score=137.85 Aligned_cols=156 Identities=11% Similarity=0.082 Sum_probs=146.0
Q ss_pred CCceEeeCCChhHHHHHHHHHHcCCeEEEecCCCCcCccchhhhhhhhhcCCCCCccccchhhhhcccccchhhhhcccc
Q psy17980 5 NGLKILKLTDSTYMRTMEACVRLGLPVLLEDVGETLDPALGPILLKQTYTKGKTPRRSYADQAYIHGMVFTNRACKMTKG 84 (252)
Q Consensus 5 ~~l~~~~~~~~~~~~~~e~~i~~G~~~lie~~~e~~dp~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (252)
+.-..++|....|...+++|+|.|..++|.| +|-+||.++|++.++|.+
T Consensus 2503 kkail~sf~e~~f~~~L~~a~r~gs~~iI~d-aE~~d~~i~rlIk~ef~s------------------------------ 2551 (3164)
T COG5245 2503 KKAILGSFREMEFAFGLSQARREGSDKIIGD-AEALDEEIGRLIKEEFKS------------------------------ 2551 (3164)
T ss_pred chhhhhhhhhHHHHHHHHHHHHhccceEecc-hhhhhhhhhhhhhHHHhc------------------------------
Confidence 4444567889999999999999999999999 799999999999999888
Q ss_pred ccchhhhhhhhhhhccCCCCCcccccccccccccCccccccccCCCCCCCCCCCCCcccCCCCCeEEEEeCCeeeeeCCC
Q psy17980 85 FLSVCFLSEIKIWTRNSHHGSLFYDETRYCALSEGGHILFSLCTSGPHSPPMNLTNFFYPPSGGRTLIKLGDTVVDYDPK 164 (252)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~veynpn 164 (252)
.+|+..+.+|+..|...-.
T Consensus 2552 -------------------------------------------------------------~~~eV~v~i~~~eI~~S~~ 2570 (3164)
T COG5245 2552 -------------------------------------------------------------NLSEVKVMINPPEIVRSTV 2570 (3164)
T ss_pred -------------------------------------------------------------CCceEEEEECCCeeEEecc
Confidence 6688899999999999999
Q ss_pred ceEEEeecCCCCCCChhhcceeEEEEeeeChhhHHHHHHHHHHhhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy17980 165 FRLYLTTKLPNPHYLPETCIQIGLINFTVTSSGLEEQLMADVVRLERPDLEQERNQVIVTMNKDKSMLKEIEDNILRLLF 244 (252)
Q Consensus 165 FRLYLtTKL~nPhy~PEV~SkvTVINFTVT~eGLEeQLLsiVV~~ErPELEeqR~eLike~ae~K~~Lk~LED~LL~~LS 244 (252)
|.+|..+..++-..+.-..+++.+|+|+....|+|.|+++.+++.+.|++..++..|.+..+..+.+|+.|+.+||..|.
T Consensus 2571 ~~vf~~se~~Sgdm~~~~~k~l~~v~Fvs~v~~~ET~i~d~~~~~~~~~lf~~~~~l~~lk~~~~l~L~~L~~~ll~~L~ 2650 (3164)
T COG5245 2571 EAVFWLSEGRSGDMGSIEWKQLIQVMFVSKVLGCETEIPDALEKLVSGPLFVHEKALNALKACGSLFLWVLARYLLAKLM 2650 (3164)
T ss_pred eeEEEEeecCCCchhHHHHHHhHhhheehhhhhhhhhhhHHHHhhhccchhhhHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 99999999998777777889999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCC
Q psy17980 245 TSEGEILA 252 (252)
Q Consensus 245 ~S~g~il~ 252 (252)
++.|+++.
T Consensus 2651 ~s~~nm~~ 2658 (3164)
T COG5245 2651 LSISNMEQ 2658 (3164)
T ss_pred hccccccc
Confidence 99999863
No 4
>PF03028 Dynein_heavy: Dynein heavy chain and region D6 of dynein motor; InterPro: IPR004273 Dynein is a multisubunit microtubule-dependent motor enzyme that acts as the force generating protein of eukaryotic cilia and flagella. The cytoplasmic isoform of dynein acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. Dynein is composed of a number of ATP-binding large subunits, intermediate size subunits and small subunits (see IPR001372 from INTERPRO). This family represents the C-terminal region of dynein heavy chain. The dynein heavy chain also exhibits ATPase activity and microtubule binding ability and acts as a motor for the movement of organelles and vesicles along microtubules. ; GO: 0003777 microtubule motor activity, 0007018 microtubule-based movement, 0030286 dynein complex; PDB: 3VKG_A 3VKH_C 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=93.33 E-value=0.6 Score=47.77 Aligned_cols=106 Identities=22% Similarity=0.363 Sum_probs=72.1
Q ss_pred CCceEeeCCChh---HHHHHHHHHHcCCeEEEecCCCCcCccchhhhhhhhhcCCCCCccccchhhhhcccccchhhhhc
Q psy17980 5 NGLKILKLTDST---YMRTMEACVRLGLPVLLEDVGETLDPALGPILLKQTYTKGKTPRRSYADQAYIHGMVFTNRACKM 81 (252)
Q Consensus 5 ~~l~~~~~~~~~---~~~~~e~~i~~G~~~lie~~~e~~dp~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (252)
.++.++.++... -.+.|+.|++.|.-|+|+|+ .+-|.--+.|.+.+...
T Consensus 145 ~~~~~islG~~~~~~a~~~l~~a~~~G~Wv~L~N~--HL~~~wl~~Le~~l~~~-------------------------- 196 (707)
T PF03028_consen 145 KKLQSISLGSGQGPEAEKALKEAAKEGHWVLLQNC--HLAPSWLPQLEKKLESL-------------------------- 196 (707)
T ss_dssp --EEEEETTSHHHHHHHHHHHHHHHHTSEEEEETG--GGGCCCHHCHHHHHHC---------------------------
T ss_pred hheeecCCCCchHHHHHHHHHHHhcCCeEEEcccc--hhHHHHHHHHHHHHhcc--------------------------
Confidence 468888887654 35779999999999999998 46676666776654441
Q ss_pred cccccchhhhhhhhhhhccCCCCCcccccccccccccCccccccccCCCCCCCCCCCCCcccCCCCCeEEEEeCCeeeee
Q psy17980 82 TKGFLSVCFLSEIKIWTRNSHHGSLFYDETRYCALSEGGHILFSLCTSGPHSPPMNLTNFFYPPSGGRTLIKLGDTVVDY 161 (252)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vey 161 (252)
.. +.
T Consensus 197 ----------------------------------------------------------------~~------------~~ 200 (707)
T PF03028_consen 197 ----------------------------------------------------------------SP------------EI 200 (707)
T ss_dssp ----------------------------------------------------------------SS------------TT
T ss_pred ----------------------------------------------------------------cc------------cc
Confidence 00 45
Q ss_pred CCCceEEEeecCCCCCCChhhcceeEEEEeeeChhhHHHHHHHHHHhhhCCcHHH
Q psy17980 162 DPKFRLYLTTKLPNPHYLPETCIQIGLINFTVTSSGLEEQLMADVVRLERPDLEQ 216 (252)
Q Consensus 162 npnFRLYLtTKL~nPhy~PEV~SkvTVINFTVT~eGLEeQLLsiVV~~ErPELEe 216 (252)
|++|||||++. +.|.+|+.+..+...|-|- .+.|+..-|+...-....+.++.
T Consensus 201 h~~FRL~lt~~-~~~~~P~~lL~~s~kv~~E-~p~gik~~l~~~~~~~~~~~~~~ 253 (707)
T PF03028_consen 201 HPNFRLFLTSE-PSPSFPISLLQSSIKVTYE-PPPGIKANLLRTYNSISQDFFEM 253 (707)
T ss_dssp STT-EEEEEEE-SSTTS-HHHHHCSEEEEE----SSHHHHHHHHHCC--SCCHHH
T ss_pred ccceEEEEEec-CcccCCHHHHHcccceeeC-ChhHHHHHHHHHHHhhhhhhhhc
Confidence 99999999884 6789999877666666555 56678888888777766666655
No 5
>PHA02244 ATPase-like protein
Probab=77.37 E-value=10 Score=37.35 Aligned_cols=51 Identities=16% Similarity=0.149 Sum_probs=38.6
Q ss_pred EeCCeeeeeCCCceEEEeecCCC----------CCCChhhcceeEEEEeeeChhhHHHHHHH
Q psy17980 153 KLGDTVVDYDPKFRLYLTTKLPN----------PHYLPETCIQIGLINFTVTSSGLEEQLMA 204 (252)
Q Consensus 153 ~~~~~~veynpnFRLYLtTKL~n----------Phy~PEV~SkvTVINFTVT~eGLEeQLLs 204 (252)
.+.+..+..|++|+++.++.... ...++.+..|..+|+|.--. .+|.++..
T Consensus 210 ~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllDRFv~I~~dyp~-~~E~~i~~ 270 (383)
T PHA02244 210 DFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLDRFAPIEFDYDE-KIEHLISN 270 (383)
T ss_pred EecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHhhcEEeeCCCCc-HHHHHHhh
Confidence 44566677899999999998643 34477788999999998865 67776654
No 6
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=67.45 E-value=28 Score=31.32 Aligned_cols=49 Identities=16% Similarity=0.160 Sum_probs=33.9
Q ss_pred eeeeeCCCceEEEeecCCCC----CCChhhcceeEEEEeeeChhhHHHHHHHH
Q psy17980 157 TVVDYDPKFRLYLTTKLPNP----HYLPETCIQIGLINFTVTSSGLEEQLMAD 205 (252)
Q Consensus 157 ~~veynpnFRLYLtTKL~nP----hy~PEV~SkvTVINFTVT~eGLEeQLLsi 205 (252)
..+..+|+||++.|+..... ..++.+..|+..+.+..-...-|.+++..
T Consensus 144 ~~i~~~~~frvIaTsN~~~~~g~~~l~~aL~~R~~~i~i~~P~~~~e~~Il~~ 196 (262)
T TIGR02640 144 RYVDVHPEFRVIFTSNPVEYAGVHETQDALLDRLITIFMDYPDIDTETAILRA 196 (262)
T ss_pred ceEecCCCCEEEEeeCCccccceecccHHHHhhcEEEECCCCCHHHHHHHHHH
Confidence 34567999999988874421 23566888888888887666666666554
No 7
>PHA00097 K protein K
Probab=46.34 E-value=9.4 Score=27.79 Aligned_cols=33 Identities=30% Similarity=0.323 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy17980 215 EQERNQVIVTMNKDKSMLKEIEDNILRLLFTSE 247 (252)
Q Consensus 215 EeqR~eLike~ae~K~~Lk~LED~LL~~LS~S~ 247 (252)
|--|.-|..++.+.+.+|+++|.-||+.||-|.
T Consensus 18 elnrsgllveneeiqs~lk~le~lll~~lsps~ 50 (56)
T PHA00097 18 ELNRSGLLVENEEIQSQLKKLEKLLLCNLSPSS 50 (56)
T ss_pred hhccccceeccHHHHHHHHHHHHHHhhcCCCCc
Confidence 344677888899999999999999999998764
No 8
>KOG1899|consensus
Probab=45.12 E-value=28 Score=36.84 Aligned_cols=43 Identities=19% Similarity=0.326 Sum_probs=38.5
Q ss_pred EEeeeChhhHHHHHHHHHHhhhCCcHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17980 189 INFTVTSSGLEEQLMADVVRLERPDLEQERNQVIVTMNKDKSMLKEIED 237 (252)
Q Consensus 189 INFTVT~eGLEeQLLsiVV~~ErPELEeqR~eLike~ae~K~~Lk~LED 237 (252)
.+...|.+-|+.+|++. .+||.||-+|+.+..+.|.+|..+|.
T Consensus 153 ~kLnatEEmLQqellsr------tsLETqKlDLmaevSeLKLkltalEk 195 (861)
T KOG1899|consen 153 NKLNATEEMLQQELLSR------TSLETQKLDLMAEVSELKLKLTALEK 195 (861)
T ss_pred hhhchHHHHHHHHHHhh------hhHHHHHhHHHHHHHHhHHHHHHHHH
Confidence 46777889999999984 89999999999999999999999994
No 9
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=44.64 E-value=66 Score=34.86 Aligned_cols=65 Identities=14% Similarity=0.161 Sum_probs=48.7
Q ss_pred eeCCCceEEEeecCCCCCCChhhcceeEEEEeeeChhhHHHHHHHHHHhhhCCcHHHHHHHHHHHH
Q psy17980 160 DYDPKFRLYLTTKLPNPHYLPETCIQIGLINFTVTSSGLEEQLMADVVRLERPDLEQERNQVIVTM 225 (252)
Q Consensus 160 eynpnFRLYLtTKL~nPhy~PEV~SkvTVINFTVT~eGLEeQLLsiVV~~ErPELEeqR~eLike~ 225 (252)
+..++.+++|+|... ..+++-+.|||..++|.--...--.+.|..++..|.-+++.+--.++...
T Consensus 145 EPP~~v~FILaTtd~-~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~ 209 (830)
T PRK07003 145 EPPPHVKFILATTDP-QKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARA 209 (830)
T ss_pred hcCCCeEEEEEECCh-hhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 345678888888765 47788899999999998766655566677788888877777666655554
No 10
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=42.78 E-value=38 Score=27.46 Aligned_cols=42 Identities=19% Similarity=0.381 Sum_probs=34.6
Q ss_pred hhhHHHHHHHHHHhhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17980 195 SSGLEEQLMADVVRLERPDLEQERNQVIVTMNKDKSMLKEIEDNI 239 (252)
Q Consensus 195 ~eGLEeQLLsiVV~~ErPELEeqR~eLike~ae~K~~Lk~LED~L 239 (252)
...-|++.. -+.|+..|++.|..|.++....++.|+++|+.|
T Consensus 58 E~A~E~~Y~---r~~EkEqL~~Lk~kl~~e~~~~~k~i~~le~~I 99 (100)
T PF04568_consen 58 EAAQEEQYF---RKKEKEQLKKLKEKLKEEIEHHRKEIDELEKHI 99 (100)
T ss_dssp HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344566654 477888999999999999999999999999876
No 11
>PF12283 Protein_K: Bacteriophage protein K; InterPro: IPR020962 This family of proteins is found in the microviridae (isometric ssDNA phages) and are approximately 60 amino acids in length. The function of these proteins are unknown. In phi X174 site-directed mutagenesis of gene K produces small plaques on su- hosts. The mutant phage has an identical latent period, but a more reduced burst size than that of the wild-type phi X174. The reduced burst size in the gene K mutant suggests that the gene K protein, although not essential, has a role in increasing infectivity by increasing the burst size three to six fold [].
Probab=39.65 E-value=17 Score=26.56 Aligned_cols=33 Identities=33% Similarity=0.387 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy17980 215 EQERNQVIVTMNKDKSMLKEIEDNILRLLFTSE 247 (252)
Q Consensus 215 EeqR~eLike~ae~K~~Lk~LED~LL~~LS~S~ 247 (252)
|--|.-|..++.+.+-+|+++|.-||..||-|.
T Consensus 18 elnrsgllvene~i~~~l~~le~lllr~lsps~ 50 (56)
T PF12283_consen 18 ELNRSGLLVENEEIQSQLKQLEKLLLRDLSPSS 50 (56)
T ss_pred HhcccccccccHHHHHHHHHHHHHHhhcCCCCc
Confidence 334667888889999999999999999998764
No 12
>PF09340 NuA4: Histone acetyltransferase subunit NuA4; InterPro: IPR015418 The NuA4 histone acetyltransferase (HAT) multisubunit complex is responsible for acetylation of histone H4 and H2A N-terminal tails in yeast []. NuA4 complexes are highly conserved in eukaryotes and play primary roles in transcription, cellular response to DNA damage, and cell cycle control [].
Probab=36.53 E-value=83 Score=24.21 Aligned_cols=38 Identities=16% Similarity=0.225 Sum_probs=28.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q psy17980 213 DLEQERNQVIVTMNKDKSMLKEIEDNILRLLFTSEGEIL 251 (252)
Q Consensus 213 ELEeqR~eLike~ae~K~~Lk~LED~LL~~LS~S~g~il 251 (252)
++.++|..|..+....+.++-++|-.-|+ =++.-|||+
T Consensus 6 ~l~~~k~~Le~~L~~lE~qIy~~Et~YL~-~~~~~GNii 43 (80)
T PF09340_consen 6 ELLQKKKKLEKDLAALEKQIYDKETSYLE-DTSPYGNII 43 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-ccCcCCCCe
Confidence 56677888888888888888888888887 223457775
No 13
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=34.97 E-value=2.3e+02 Score=34.84 Aligned_cols=73 Identities=18% Similarity=0.194 Sum_probs=44.8
Q ss_pred eeCCCceEEEe----ecCCCCCCChhhcceeEEEEeeeChhhHHHHHHHHHHhhh-CCcHHHHHHHHHHHHHHHHHHHHH
Q psy17980 160 DYDPKFRLYLT----TKLPNPHYLPETCIQIGLINFTVTSSGLEEQLMADVVRLE-RPDLEQERNQVIVTMNKDKSMLKE 234 (252)
Q Consensus 160 eynpnFRLYLt----TKL~nPhy~PEV~SkvTVINFTVT~eGLEeQLLsiVV~~E-rPELEeqR~eLike~ae~K~~Lk~ 234 (252)
..||+||||=+ |..-...+++.++++.|-|...--...|.+- |+++=+.- +=++.++| ...+++++-...|.
T Consensus 678 ~~Hp~FrlFgCMNP~tDvGKr~le~~~rsrFteIyVhsp~~~l~Dl-lsII~kyig~y~Is~E~--v~~~IaElyleaKs 754 (4600)
T COG5271 678 RIHPGFRLFGCMNPGTDVGKRKLEGSFRSRFTEIYVHSPSTSLKDL-LSIIHKYIGRYEISEER--VSRKIAELYLEAKS 754 (4600)
T ss_pred ccCCCceEEeecCCCcccccccCCcccccceeEEEEeCccccHHHH-HHHHHHHHhheecchHH--HhHHHHHHHHHHHH
Confidence 35999999964 3333446889999999999887777777775 44333322 44444433 23345555544444
Q ss_pred H
Q psy17980 235 I 235 (252)
Q Consensus 235 L 235 (252)
+
T Consensus 755 l 755 (4600)
T COG5271 755 L 755 (4600)
T ss_pred h
Confidence 3
No 14
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=29.01 E-value=1.2e+02 Score=30.84 Aligned_cols=39 Identities=15% Similarity=0.304 Sum_probs=31.3
Q ss_pred HHHHHHHhhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17980 201 QLMADVVRLERPDLEQERNQVIVTMNKDKSMLKEIEDNI 239 (252)
Q Consensus 201 QLLsiVV~~ErPELEeqR~eLike~ae~K~~Lk~LED~L 239 (252)
|=+...|..+++++++++.+|..+..+.+..|.+|+++|
T Consensus 101 ~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~~l 139 (472)
T TIGR03752 101 QQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQRRL 139 (472)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335566777888888888888888888888888888877
No 15
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=26.49 E-value=1.9e+02 Score=21.30 Aligned_cols=38 Identities=26% Similarity=0.307 Sum_probs=30.8
Q ss_pred HhhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy17980 207 VRLERPDLEQERNQVIVTMNKDKSMLKEIEDNILRLLF 244 (252)
Q Consensus 207 V~~ErPELEeqR~eLike~ae~K~~Lk~LED~LL~~LS 244 (252)
+..+-|.++..-..+.+++.+.+..+..+++++-..|+
T Consensus 5 lEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ll~ 42 (55)
T PF05377_consen 5 LENELPRIESSINTVKKENEEISESVEKIEENVKDLLS 42 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566788888888999999999999999999866653
No 16
>PF07829 Toxin_14: Alpha-A conotoxin PIVA-like protein; InterPro: IPR012498 Alpha-A conotoxin PIVA (P55963 from SWISSPROT) is the major paralytic toxin found in the venom produced by the piscivorous snail Conus purpurascens. This peptide acts by blocking the acetylcholine-binding site of the nicotinic acetylcholine receptor at the neuromuscular junction []. The overall shape of the peptide is described as an "iron" with a highly charged hydrophilic loop of 15S-19R forming the "handle" domain that is exposed to the exterior of the protein. The stability of the conotoxin is primarily governed by three disulphide bonds. A triangular structural motif formed by residues 19R, 12H and 6Y is thought to constitute a "binding core" that is important in binding to the acetylcholine receptor []. ; GO: 0030550 acetylcholine receptor inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 1PQR_A 1P1P_A.
Probab=26.38 E-value=21 Score=22.32 Aligned_cols=9 Identities=33% Similarity=0.693 Sum_probs=5.4
Q ss_pred ccchhhhhc
Q psy17980 73 VFTNRACKM 81 (252)
Q Consensus 73 ~~~~~~~~~ 81 (252)
.|||+||.-
T Consensus 5 ~ypnaachp 13 (26)
T PF07829_consen 5 PYPNAACHP 13 (26)
T ss_dssp TSSSSS--T
T ss_pred CCCCccccc
Confidence 489999853
No 17
>PF09602 PhaP_Bmeg: Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg); InterPro: IPR011728 This entry describes a protein found in polyhydroxyalkanoic acid (PHA) gene regions and incorporated into PHA inclusions in Bacillus cereus and Bacillus megaterium. The role of the protein may include amino acid storage [].
Probab=23.33 E-value=1.3e+02 Score=26.59 Aligned_cols=56 Identities=9% Similarity=0.185 Sum_probs=43.2
Q ss_pred ChhhHHHHHHHHHHhhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q psy17980 194 TSSGLEEQLMADVVRLERPDLEQERNQVIVTMNKDKSMLKEIEDNILRLLFTSEGEI 250 (252)
Q Consensus 194 T~eGLEeQLLsiVV~~ErPELEeqR~eLike~ae~K~~Lk~LED~LL~~LS~S~g~i 250 (252)
-..++|+|.|.. ++..+--+-+...+|.+...+.+....++..++.+.|+++.|+-
T Consensus 27 ~~kqve~~~l~~-lkqqqd~itk~veeLe~~~~q~~~~~s~~~~~~vk~L~k~~~~~ 82 (165)
T PF09602_consen 27 FMKQVEQQTLKK-LKQQQDWITKQVEELEKELKQFKREFSDLYEEYVKQLRKATGNS 82 (165)
T ss_pred HhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346778887776 55555557778888888888889999999999999997776653
No 18
>PF00943 Alpha_E2_glycop: Alphavirus E2 glycoprotein; InterPro: IPR000936 Alphaviruses are enveloped RNA viruses that use arthropods such as mosquitoes for transmission to their vertebrate hosts, and include Semliki Forest and Sindbis viruses []. Alphaviruses consist of three structural proteins: the core nucleocapsid protein C, and the envelope proteins P62 and E1 (IPR002548 from INTERPRO) that associate as a heterodimer. The viral membrane-anchored surface glycoproteins are responsible for receptor recognition and entry into target cells through membrane fusion. The proteolytic maturation of P62 into E2 and E3 (IPR002533 from INTERPRO) causes a change in the viral surface. Together the E1, E2, and sometimes E3 glycoprotein "spikes" form an E1/E2 dimer or an E1/E2/E3 trimer, where E2 extends from the centre to the vertices, E1 fills the space between the vertices, and E3, if present, is at the distal end of the spike [, ]. Upon exposure of the virus to the acidity of the endosome, E1 dissociates from E2 to form an E1 homotrimer, which is necessary for the fusion step to drive the cellular and viral membranes together []. This entry represents the alphaviral E2 glycoprotein. The E2 glycoprotein functions to interact with the nucleocapsid through its cytoplasmic domain, while its ectodomain is responsible for binding a cellular receptor.; GO: 0005198 structural molecule activity, 0019028 viral capsid; PDB: 2XFC_B 3N42_B 3N41_B 2XFB_E 3N40_P 3N43_B 3N44_B 3MUU_B 1Z8Y_P 3J0C_H ....
Probab=21.87 E-value=45 Score=33.21 Aligned_cols=50 Identities=30% Similarity=0.288 Sum_probs=35.6
Q ss_pred EEEEeCCee--eeeCCCceEEEeecCC--CCCCChhhcceeEEEEeeeChhhHH
Q psy17980 150 TLIKLGDTV--VDYDPKFRLYLTTKLP--NPHYLPETCIQIGLINFTVTSSGLE 199 (252)
Q Consensus 150 ~~~~~~~~~--veynpnFRLYLtTKL~--nPhy~PEV~SkvTVINFTVT~eGLE 199 (252)
..++.|-+. +-.+|+---+|+||.. .|++..|--+.-+..||+|+.+|+|
T Consensus 260 P~v~~~~r~v~L~Lhp~hPTLLt~R~Lg~~p~~t~eWI~~~~~r~~~V~~eG~E 313 (403)
T PF00943_consen 260 PTVTHGFRSVTLHLHPDHPTLLTTRSLGAEPEPTEEWITGPTERNFTVTEEGLE 313 (403)
T ss_dssp -EEEEETTEEEEEEEESSEEEEEEEESSSS--EEEEEECSEEEEEEE-STT-EE
T ss_pred CeeEeccceEEEEEcCCCCceEEeeccCCCCCCcceeeecceEEEEEECCCceE
Confidence 355655444 4457888899999954 6788888888999999999999987
No 19
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=20.64 E-value=3.5e+02 Score=27.36 Aligned_cols=64 Identities=17% Similarity=0.097 Sum_probs=42.2
Q ss_pred eCCCceEEEeecCCCCCCChhhcceeEEEEeeeChhhHHHHHHHHHHhhhCCcHHHHHHHHHHH
Q psy17980 161 YDPKFRLYLTTKLPNPHYLPETCIQIGLINFTVTSSGLEEQLMADVVRLERPDLEQERNQVIVT 224 (252)
Q Consensus 161 ynpnFRLYLtTKL~nPhy~PEV~SkvTVINFTVT~eGLEeQLLsiVV~~ErPELEeqR~eLike 224 (252)
+..+|+++.+|...--..+|.+.+|+..|.|---...=-.+++...++.+...++..--+++..
T Consensus 230 ~~~d~rlI~ATt~~p~~L~paLrsR~~~I~f~pL~~eei~~Il~~~a~k~~i~is~~al~~I~~ 293 (531)
T TIGR02902 230 LPADFRLIGATTRNPEEIPPALRSRCVEIFFRPLLDEEIKEIAKNAAEKIGINLEKHALELIVK 293 (531)
T ss_pred cccceEEEEEecCCcccCChHHhhhhheeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHH
Confidence 4678999987765433678899999988888654333334566667776666665554444444
Done!