Query psy17980
Match_columns 252
No_of_seqs 120 out of 768
Neff 4.3
Searched_HMMs 29240
Date Fri Aug 16 19:16:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17980.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17980hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4akg_A Glutathione S-transfera 100.0 2E-43 6.8E-48 390.7 17.1 157 4-252 2026-2182(2695)
2 3vkg_A Dynein heavy chain, cyt 100.0 1.4E-43 4.7E-48 395.4 8.4 160 1-252 2203-2362(3245)
3 4akg_A Glutathione S-transfera 67.3 6.6 0.00023 45.3 6.1 44 5-50 2412-2460(2695)
4 3vkg_A Dynein heavy chain, cyt 62.0 6.3 0.00022 46.3 4.7 44 6-51 2671-2718(3245)
5 3t97_B Nuclear pore complex pr 43.2 51 0.0018 23.9 5.4 41 205-245 13-53 (65)
6 3j0f_I E2 envelope glycoprotei 37.1 19 0.00067 34.5 3.0 51 150-200 274-328 (423)
7 2xfc_B E2 envelope glycoprotei 33.0 19 0.00064 34.6 2.1 51 149-199 273-327 (423)
8 2yew_C E2 envelope glycoprotei 29.1 18 0.00063 34.6 1.4 51 149-199 271-325 (421)
9 3j0c_B E2 envelope glycoprotei 28.1 26 0.00088 33.7 2.2 51 149-199 273-327 (423)
10 3n40_P P62 envelope glycoprote 28.0 26 0.00089 33.4 2.2 51 149-199 333-387 (401)
11 1p1p_A AA-conotoxin PIVA; neur 27.7 12 0.00041 22.5 -0.1 9 73-81 5-13 (26)
12 2oqq_A Transcription factor HY 25.1 1E+02 0.0035 20.6 4.1 25 213-237 7-31 (42)
13 1gmj_A ATPase inhibitor; coile 22.5 78 0.0027 24.0 3.5 32 208-239 36-67 (84)
14 1pqr_A Alpha-A-conotoxin EIVA; 21.2 19 0.00066 22.4 -0.1 9 73-81 5-13 (31)
No 1
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=100.00 E-value=2e-43 Score=390.73 Aligned_cols=157 Identities=22% Similarity=0.441 Sum_probs=153.9
Q ss_pred CCCceEeeCCChhHHHHHHHHHHcCCeEEEecCCCCcCccchhhhhhhhhcCCCCCccccchhhhhcccccchhhhhccc
Q psy17980 4 PNGLKILKLTDSTYMRTMEACVRLGLPVLLEDVGETLDPALGPILLKQTYTKGKTPRRSYADQAYIHGMVFTNRACKMTK 83 (252)
Q Consensus 4 ~~~l~~~~~~~~~~~~~~e~~i~~G~~~lie~~~e~~dp~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (252)
+++|+|++++|++|++++|+|||+|.|||||| +|+|||+|+|||+|++++
T Consensus 2026 ~~~l~v~~~~d~~f~~~lE~ai~~G~pvLien-~E~lDp~L~pvL~k~~~k----------------------------- 2075 (2695)
T 4akg_A 2026 GNKTVLLSFLEEGFVKRLENAIRFGSVVIIQD-GEFFDPIISRLISREFNH----------------------------- 2075 (2695)
T ss_dssp GGGEEEECTTSSTHHHHHHHHHHTTCEEEESC-SSSCCSTTHHHHTTCCEE-----------------------------
T ss_pred cCCceEeeCCcHHHHHHHHHHHHcCCeEEEcc-ccccchhHHHHHhhHhhh-----------------------------
Confidence 46899999999999999999999999999999 799999999999999999
Q ss_pred cccchhhhhhhhhhhccCCCCCcccccccccccccCccccccccCCCCCCCCCCCCCcccCCCCCeEEEEeCCeeeeeCC
Q psy17980 84 GFLSVCFLSEIKIWTRNSHHGSLFYDETRYCALSEGGHILFSLCTSGPHSPPMNLTNFFYPPSGGRTLIKLGDTVVDYDP 163 (252)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~veynp 163 (252)
+||+.+|++||+.|||||
T Consensus 2076 --------------------------------------------------------------~gg~~~i~lGdk~idy~~ 2093 (2695)
T 4akg_A 2076 --------------------------------------------------------------AGNRVTVEIGDHEVDVSG 2093 (2695)
T ss_dssp --------------------------------------------------------------CSSCEEEECSSSEEECCS
T ss_pred --------------------------------------------------------------cCCeEEEEECCeeEecCC
Confidence 789999999999999999
Q ss_pred CceEEEeecCCCCCCChhhcceeEEEEeeeChhhHHHHHHHHHHhhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17980 164 KFRLYLTTKLPNPHYLPETCIQIGLINFTVTSSGLEEQLMADVVRLERPDLEQERNQVIVTMNKDKSMLKEIEDNILRLL 243 (252)
Q Consensus 164 nFRLYLtTKL~nPhy~PEV~SkvTVINFTVT~eGLEeQLLsiVV~~ErPELEeqR~eLike~ae~K~~Lk~LED~LL~~L 243 (252)
+|||||+||++||||+||++++||+||||||++|||+|||+.||+.|+||||++|.+|+++++++|++|++|||+||+.|
T Consensus 2094 ~FrlyltTkl~np~y~Pei~~~vt~iNFtvT~~GLedQLL~~vv~~ErPdLE~~r~~Li~~~~~~k~~Lk~lEd~lL~~L 2173 (2695)
T 4akg_A 2094 DFKLFIHSCDPSGDIPIFLRSRVRLVHFVTNKESIETRIFDITLTEENAEMQRKREDLIKLNTEYKLKLKNLEKRLLEEL 2173 (2695)
T ss_dssp SCEEEEEECCTTCCCCHHHHHHEEEEECCCCSHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CceEEEeeCCCCCCCCHHHHhheeEEEEEEcHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCC
Q psy17980 244 FTSEGEILA 252 (252)
Q Consensus 244 S~S~g~il~ 252 (252)
++|+|+||.
T Consensus 2174 s~s~GniLd 2182 (2695)
T 4akg_A 2174 NNSQGNMLE 2182 (2695)
T ss_dssp HHSSSSCST
T ss_pred hhCCCCccC
Confidence 999999985
No 2
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=100.00 E-value=1.4e-43 Score=395.39 Aligned_cols=160 Identities=34% Similarity=0.677 Sum_probs=118.3
Q ss_pred CCCCCCceEeeCCChhHHHHHHHHHHcCCeEEEecCCCCcCccchhhhhhhhhcCCCCCccccchhhhhcccccchhhhh
Q psy17980 1 MESPNGLKILKLTDSTYMRTMEACVRLGLPVLLEDVGETLDPALGPILLKQTYTKGKTPRRSYADQAYIHGMVFTNRACK 80 (252)
Q Consensus 1 ~~~~~~l~~~~~~~~~~~~~~e~~i~~G~~~lie~~~e~~dp~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (252)
||+.|+|+|++++|++|++++|+|||+|.||||||| |++||+|+|||+|++++
T Consensus 2203 ~~~~~~l~v~~~~d~~f~~~LE~ai~fG~pvLienv-E~lDP~L~pvL~k~~~k-------------------------- 2255 (3245)
T 3vkg_A 2203 QYADKKITKTSFLDSSFMKNLESALRFGCPLLVQDV-ENIDPVLNPVLNKEIRK-------------------------- 2255 (3245)
T ss_dssp HTGGGCCCCCCC-----HHHHHHHHHHTCCEECCCC-C------------------------------------------
T ss_pred HhccCCceEeecCchhHHHHHHHHHHcCCeEEEccc-cccchhHHHHHHHHHHh--------------------------
Confidence 467789999999999999999999999999999999 99999999999999999
Q ss_pred ccccccchhhhhhhhhhhccCCCCCcccccccccccccCccccccccCCCCCCCCCCCCCcccCCCCCeEEEEeCCeeee
Q psy17980 81 MTKGFLSVCFLSEIKIWTRNSHHGSLFYDETRYCALSEGGHILFSLCTSGPHSPPMNLTNFFYPPSGGRTLIKLGDTVVD 160 (252)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ve 160 (252)
+||+.+|++||+.|+
T Consensus 2256 -----------------------------------------------------------------~gg~~~I~lGdk~id 2270 (3245)
T 3vkg_A 2256 -----------------------------------------------------------------KGGRILIRLGDQDVD 2270 (3245)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -----------------------------------------------------------------cCceEEEEECCeeEe
Confidence 788999999999999
Q ss_pred eCCCceEEEeecCCCCCCChhhcceeEEEEeeeChhhHHHHHHHHHHhhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17980 161 YDPKFRLYLTTKLPNPHYLPETCIQIGLINFTVTSSGLEEQLMADVVRLERPDLEQERNQVIVTMNKDKSMLKEIEDNIL 240 (252)
Q Consensus 161 ynpnFRLYLtTKL~nPhy~PEV~SkvTVINFTVT~eGLEeQLLsiVV~~ErPELEeqR~eLike~ae~K~~Lk~LED~LL 240 (252)
|+|+|||||+||++||||+||++++||+||||||++|||+|||+.||+.|+||||++|.+|+++++++|++|++|||+||
T Consensus 2271 y~~~FrlyltTkl~np~y~Pev~~kvtlINFtvT~~GLedQLL~~vv~~ErPeLE~~r~~Li~~~~~~k~~L~~LEd~lL 2350 (3245)
T 3vkg_A 2271 FSPSFMIFLFTRDPTAHFTPDLCSRVTFVNFTVTPSSLQSQCLHEALKTERPDTHKKRSDLLKIQGEFQVKLRILEKSLL 2350 (3245)
T ss_dssp ---CCCEEEEECCTTCCCCHHHHHTSEEEECCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTTHHHHHHHHTTTHHHH
T ss_pred cCCCceEEEEecCCCCCCCHHHHhheEEEEEEecHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCCC
Q psy17980 241 RLLFTSEGEILA 252 (252)
Q Consensus 241 ~~LS~S~g~il~ 252 (252)
+.|++|+|+||.
T Consensus 2351 ~~Ls~s~GniLd 2362 (3245)
T 3vkg_A 2351 NALSQASGNILD 2362 (3245)
T ss_dssp HHHHTTSSCGGG
T ss_pred HHHHhCCCcccc
Confidence 999999999984
No 3
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=67.29 E-value=6.6 Score=45.30 Aligned_cols=44 Identities=18% Similarity=0.171 Sum_probs=33.6
Q ss_pred CCceEeeCCChh----HHHHHHHHHHcCCeEEEecCCCCcCccchhhh-hh
Q psy17980 5 NGLKILKLTDST----YMRTMEACVRLGLPVLLEDVGETLDPALGPIL-LK 50 (252)
Q Consensus 5 ~~l~~~~~~~~~----~~~~~e~~i~~G~~~lie~~~e~~dp~l~~~l-~~ 50 (252)
.++..+++++.. -.+.|+.|.+.|.-|+++|+ -|-|.--|-| .|
T Consensus 2412 ~~~~~iSlGqgq~~~~A~~~i~~a~~~G~Wv~LqN~--HL~~swl~~Llek 2460 (2695)
T 4akg_A 2412 ESLKIIPLGSIENLNYAQEEISKSKIEGGWILLQNI--QMSLSWVKTYLHK 2460 (2695)
T ss_dssp CCCCEEECCSHHHHHHHHHHHHHHHHHTCCEEEETG--GGGHHHHHHTHHH
T ss_pred CCcEEEecCCCccHHHHHHHHHHHHHcCCeEEeecc--cccHHHHHHHHHH
Confidence 467889998742 46889999999999999998 4666555555 44
No 4
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=62.01 E-value=6.3 Score=46.25 Aligned_cols=44 Identities=23% Similarity=0.250 Sum_probs=33.6
Q ss_pred CceEeeCCCh----hHHHHHHHHHHcCCeEEEecCCCCcCccchhhhhhh
Q psy17980 6 GLKILKLTDS----TYMRTMEACVRLGLPVLLEDVGETLDPALGPILLKQ 51 (252)
Q Consensus 6 ~l~~~~~~~~----~~~~~~e~~i~~G~~~lie~~~e~~dp~l~~~l~~~ 51 (252)
++..+++++. .=.+.|+.|++.|.-|+++|+ -|-|.--|-|.|.
T Consensus 2671 ~~~~iSLGqgQg~~~A~~~i~~a~~~G~WV~LqNc--HL~~sWl~~LEk~ 2718 (3245)
T 3vkg_A 2671 QYKSFAIGSPEGFELAEKSIYAAAKSGTWVLLKNI--HLAPQWLVQLEKK 2718 (3245)
T ss_dssp CCCCCBTTSHHHHHHHHHHHHHHHHHTCEEECBCG--GGCTTTHHHHHHH
T ss_pred CcEEEECCCCccHHHHHHHHHHHHHcCCEEEEech--hhhHhHHHHHHHH
Confidence 5667788873 236889999999999999998 4666666666653
No 5
>3t97_B Nuclear pore complex protein NUP54; nucleoporin, coiled-coil, nuclear pore complex, central TRAN channel, alpha helical proteins, triple helix; 2.80A {Rattus norvegicus}
Probab=43.18 E-value=51 Score=23.92 Aligned_cols=41 Identities=15% Similarity=0.387 Sum_probs=35.2
Q ss_pred HHHhhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy17980 205 DVVRLERPDLEQERNQVIVTMNKDKSMLKEIEDNILRLLFT 245 (252)
Q Consensus 205 iVV~~ErPELEeqR~eLike~ae~K~~Lk~LED~LL~~LS~ 245 (252)
..+..|-.||...........++++.++.+|--++|..|..
T Consensus 13 d~i~~el~eLq~~~~~~~aki~e~krkl~eLsHRiLkvlv~ 53 (65)
T 3t97_B 13 DIISEDISELQKNQTTTMAKIAQYKRKLMDLSHRTLQVLIK 53 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 45667777888888888899999999999999999998854
No 6
>3j0f_I E2 envelope glycoprotein; alphavirus, virus assembly; 7.00A {Sindbis virus} PDB: 1z8y_J
Probab=37.11 E-value=19 Score=34.50 Aligned_cols=51 Identities=29% Similarity=0.271 Sum_probs=40.8
Q ss_pred EEEEeCCee--eeeCCCceEEEeecCC--CCCCChhhcceeEEEEeeeChhhHHH
Q psy17980 150 TLIKLGDTV--VDYDPKFRLYLTTKLP--NPHYLPETCIQIGLINFTVTSSGLEE 200 (252)
Q Consensus 150 ~~~~~~~~~--veynpnFRLYLtTKL~--nPhy~PEV~SkvTVINFTVT~eGLEe 200 (252)
..|+.|-+. +-.+|+---+|+||.. .|++..|.-+.-+..||+|+++|+|-
T Consensus 274 P~v~~~~r~vtL~Lhp~hPTLLTtR~LG~~p~~t~EWI~~~~~rnf~V~~eG~Ey 328 (423)
T 3j0f_I 274 PNVIHGFKHISLQLDTDHLTLLTTRRLGANPEPTTEWIVGKTVRNFTVDRDGLEY 328 (423)
T ss_pred CeeEeccceEEEEecCCCCceEEEeccCCCCCCchhheecceEEEEEECCcceEE
Confidence 355666444 4567899999999954 78899998888999999999999984
No 7
>2xfc_B E2 envelope glycoprotein; receptor binding, membrane fusion, icosahedral envelo; 9.00A {Chikungunya virus}
Probab=33.01 E-value=19 Score=34.62 Aligned_cols=51 Identities=22% Similarity=0.314 Sum_probs=40.4
Q ss_pred eEEEEeCCee--eeeCCCceEEEeecCC--CCCCChhhcceeEEEEeeeChhhHH
Q psy17980 149 RTLIKLGDTV--VDYDPKFRLYLTTKLP--NPHYLPETCIQIGLINFTVTSSGLE 199 (252)
Q Consensus 149 ~~~~~~~~~~--veynpnFRLYLtTKL~--nPhy~PEV~SkvTVINFTVT~eGLE 199 (252)
...|+.|-+. +..+|+---+|+||.. .|++..|--+.-+..||+|+++|+|
T Consensus 273 eP~v~~~~r~v~L~Lhp~hPTLLTtR~LG~~p~~t~EWI~~~~~rnf~V~~eG~E 327 (423)
T 2xfc_B 273 NPTVTYGKNQVIMLLYPDHPTLLSYRNMGEEPNYQEEWVMHKKEVVLTVPTEGLE 327 (423)
T ss_dssp CCEEEEETTEEEEEECCSSCEEEEEEC-CCCCCCEEEEECSCEEEEEECCTTCEE
T ss_pred CCceEeccceEEEEecCCCCceEEEeccCCCCCCcceeeecceEEEEEeCCCceE
Confidence 3456666444 4567999999999955 6888889888899999999999987
No 8
>2yew_C E2 envelope glycoprotein; alphavirus, molecular dynamics; 5.00A {Barmah forest virus}
Probab=29.09 E-value=18 Score=34.63 Aligned_cols=51 Identities=12% Similarity=0.117 Sum_probs=40.6
Q ss_pred eEEEEeCCee--eeeCCCceEEEeecCC--CCCCChhhcceeEEEEeeeChhhHH
Q psy17980 149 RTLIKLGDTV--VDYDPKFRLYLTTKLP--NPHYLPETCIQIGLINFTVTSSGLE 199 (252)
Q Consensus 149 ~~~~~~~~~~--veynpnFRLYLtTKL~--nPhy~PEV~SkvTVINFTVT~eGLE 199 (252)
...|+.|-+. +-.+|+.--+|+||.. .|++..|.-+.-+..||+|+++|+|
T Consensus 271 eP~v~~~~r~v~L~lhp~hPTLLTtR~LG~~p~~t~EWI~~~~~rnf~V~~eG~E 325 (421)
T 2yew_C 271 EPQVTYRLGEVEFHFHPMYPTLFSIRSLGKDPSHSQEWIDTPMSKTIQVGAEGVE 325 (421)
T ss_dssp CCEEEEETTEEEEEECCCSCEEEEEECSSSSCCEEEEEECSCEEEEECCCSSCEE
T ss_pred CCceEeccceEEEEecCCCCceEEEeccCCCCCCcceeeecceEEEEEeCCCceE
Confidence 3456666444 4567999999999955 6788888888899999999999987
No 9
>3j0c_B E2 envelope glycoprotein; alphavirus, bioweapon; 4.80A {Venezuelan equine encephalitis virus}
Probab=28.13 E-value=26 Score=33.67 Aligned_cols=51 Identities=35% Similarity=0.513 Sum_probs=40.8
Q ss_pred eEEEEeCCee--eeeCCCceEEEeecCC--CCCCChhhcceeEEEEeeeChhhHH
Q psy17980 149 RTLIKLGDTV--VDYDPKFRLYLTTKLP--NPHYLPETCIQIGLINFTVTSSGLE 199 (252)
Q Consensus 149 ~~~~~~~~~~--veynpnFRLYLtTKL~--nPhy~PEV~SkvTVINFTVT~eGLE 199 (252)
...|+.|-+. +-.+|+---+|+||.. .|++..|.-+.-+..||+|+++|+|
T Consensus 273 ~P~v~~~~r~vtL~Lhp~hPTLLTtR~LG~~p~~t~EWI~~~~~rnf~V~~eG~E 327 (423)
T 3j0c_B 273 EPMITFGFRSVSLKLHPKNPTYLITRQLADEPHYTHELISEPAVRNFTVTEKGWE 327 (423)
T ss_dssp CCEEEEETTEEEEEECCSSCEEEEEEESSSCCCCEEEEECSCEEEEEECCTTCEE
T ss_pred CCceEeccceEEEEecCCCCceEEEeccCCCCCCcceeeecceEEEEEECCcceE
Confidence 3456666544 4567999999999944 7888889888899999999999987
No 10
>3n40_P P62 envelope glycoprotein; viral protein, immature heterodimer, alphavirus, receptor BI membrane fusion; HET: NAG NDG; 2.17A {Chikungunya virus} PDB: 3n44_B* 3n41_B* 3n42_B* 3n43_B* 2xfb_B 3n44_A* 3n41_A* 3n42_A* 3n43_A*
Probab=28.00 E-value=26 Score=33.42 Aligned_cols=51 Identities=22% Similarity=0.314 Sum_probs=40.8
Q ss_pred eEEEEeCCee--eeeCCCceEEEeecCC--CCCCChhhcceeEEEEeeeChhhHH
Q psy17980 149 RTLIKLGDTV--VDYDPKFRLYLTTKLP--NPHYLPETCIQIGLINFTVTSSGLE 199 (252)
Q Consensus 149 ~~~~~~~~~~--veynpnFRLYLtTKL~--nPhy~PEV~SkvTVINFTVT~eGLE 199 (252)
...|+.|-+. +-.+|+---+|+||.. .|++..|.-+.-+..||+|+.+|+|
T Consensus 333 ~P~v~~~~r~vtL~Lhp~hPTLLTtR~LG~~p~~t~EWI~~~~~rnf~V~~eG~E 387 (401)
T 3n40_P 333 NPTVTYGKNQVIMLLYPDHPTLLSYRNMGEEPNYQEEWVMHKKEVVLTVPTEGLE 387 (401)
T ss_dssp CCEEEEETTEEEEEECCSSCEEEEEEESSSCCCCEEEEECSCEEEEEECCTTCEE
T ss_pred CCceEeccceEEEEecCCCCceEEEeccCCCCCCcceeeecceEEEEEeCCCceE
Confidence 3456666444 4567999999999944 7888889888899999999999987
No 11
>1p1p_A AA-conotoxin PIVA; neurotoxin, acetylcholine receptor binding, transcription regulation; HET: HYP; NMR {Conus purpurascens} SCOP: j.30.1.3
Probab=27.72 E-value=12 Score=22.54 Aligned_cols=9 Identities=33% Similarity=0.722 Sum_probs=6.9
Q ss_pred ccchhhhhc
Q psy17980 73 VFTNRACKM 81 (252)
Q Consensus 73 ~~~~~~~~~ 81 (252)
.|||+||.-
T Consensus 5 ~ypnaachp 13 (26)
T 1p1p_A 5 SYPNAACHP 13 (26)
T ss_dssp TSCCSSCCT
T ss_pred cCCCccccc
Confidence 489999853
No 12
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=25.12 E-value=1e+02 Score=20.62 Aligned_cols=25 Identities=12% Similarity=0.194 Sum_probs=20.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17980 213 DLEQERNQVIVTMNKDKSMLKEIED 237 (252)
Q Consensus 213 ELEeqR~eLike~ae~K~~Lk~LED 237 (252)
+||.+..+|....++...++.+|+.
T Consensus 7 eLE~r~k~le~~naeLEervstLq~ 31 (42)
T 2oqq_A 7 ELENRVKDLENKNSELEERLSTLQN 31 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788888888888888888887754
No 13
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=22.46 E-value=78 Score=24.01 Aligned_cols=32 Identities=6% Similarity=0.166 Sum_probs=26.2
Q ss_pred hhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17980 208 RLERPDLEQERNQVIVTMNKDKSMLKEIEDNI 239 (252)
Q Consensus 208 ~~ErPELEeqR~eLike~ae~K~~Lk~LED~L 239 (252)
..++..|...|..+..++...+..++.+|+.|
T Consensus 36 qkekEqL~~LKkkl~~el~~h~~ei~~le~~i 67 (84)
T 1gmj_A 36 ARAKEQLAALKKHKENEISHHAKEIERLQKEI 67 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667778888888888888888999888887
No 14
>1pqr_A Alpha-A-conotoxin EIVA; alpha-helix, two disulfide bonds, C-TERM amidation; HET: HYP; NMR {Synthetic} SCOP: j.30.1.3
Probab=21.17 E-value=19 Score=22.38 Aligned_cols=9 Identities=33% Similarity=0.693 Sum_probs=6.8
Q ss_pred ccchhhhhc
Q psy17980 73 VFTNRACKM 81 (252)
Q Consensus 73 ~~~~~~~~~ 81 (252)
.|||+||.-
T Consensus 5 ~ypnaachp 13 (31)
T 1pqr_A 5 PYPNAACHP 13 (31)
T ss_dssp SSSSSSCCT
T ss_pred CCCCccccc
Confidence 489999853
Done!