Query psy17980
Match_columns 252
No_of_seqs 120 out of 768
Neff 4.3
Searched_HMMs 13730
Date Fri Aug 16 19:16:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17980.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/17980hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1njfa_ c.37.1.20 (A:) delta p 52.9 15 0.0011 28.6 6.5 75 160-236 141-218 (239)
2 d1ixsb2 c.37.1.20 (B:4-242) Ho 47.1 53 0.0039 24.7 10.1 68 160-227 131-198 (239)
3 d1sxje2 c.37.1.20 (E:4-255) Re 31.8 48 0.0035 24.8 6.3 53 161-214 158-210 (252)
4 d1a5ta2 c.37.1.20 (A:1-207) de 24.2 22 0.0016 27.3 2.9 35 162-197 136-171 (207)
5 d1ivsa1 a.2.7.3 (A:797-862) Va 20.4 71 0.0052 20.4 4.5 27 213-239 1-27 (66)
6 d1sxjc2 c.37.1.20 (C:12-238) R 18.8 70 0.0051 23.7 4.8 59 162-221 127-185 (227)
7 d1sxjb2 c.37.1.20 (B:7-230) Re 17.3 1.8E+02 0.013 21.3 7.0 73 164-237 131-205 (224)
8 d1j75a_ a.4.5.19 (A:) Dlm-1 {M 16.8 16 0.0012 24.2 0.4 16 234-249 1-16 (57)
9 d1g2913 b.40.6.3 (1:241-301) M 13.6 35 0.0026 21.7 1.5 27 133-162 2-28 (61)
10 d1sxjd2 c.37.1.20 (D:26-262) R 13.3 1.3E+02 0.0096 21.9 5.1 74 161-236 135-211 (237)
No 1
>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}
Probab=52.87 E-value=15 Score=28.65 Aligned_cols=75 Identities=11% Similarity=0.119 Sum_probs=51.2
Q ss_pred eeCCCceEEEeecCCCCCCChhhcceeEEEEee-eChhhHHHHHHHHHHhhhCCcHHHHHHHHHHHHHH--HHHHHHHHH
Q psy17980 160 DYDPKFRLYLTTKLPNPHYLPETCIQIGLINFT-VTSSGLEEQLMADVVRLERPDLEQERNQVIVTMNK--DKSMLKEIE 236 (252)
Q Consensus 160 eynpnFRLYLtTKL~nPhy~PEV~SkvTVINFT-VT~eGLEeQLLsiVV~~ErPELEeqR~eLike~ae--~K~~Lk~LE 236 (252)
++.++.+++++|... +...|.+.+|+.++.|. ++.+.+.+. +..+...|...++++--+.+...++ .+..+..||
T Consensus 141 ~~~~~~~~il~tn~~-~~i~~~i~SRc~~i~~~~~~~~~i~~~-l~~i~~~e~~~~~~~~l~~i~~~s~Gd~R~ain~l~ 218 (239)
T d1njfa_ 141 EPPEHVKFLLATTDP-QKLPVTILSRCLQFHLKALDVEQIRHQ-LEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTD 218 (239)
T ss_dssp SCCTTEEEEEEESCG-GGSCHHHHTTSEEEECCCCCHHHHHHH-HHHHHHHHTCCBCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred cCCCCeEEEEEcCCc-cccChhHhhhhcccccccCcHHHhhhH-HHHHHhhhccCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 356778889988754 57888899999999994 566666654 6677778888887766655554432 234444443
No 2
>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}
Probab=47.12 E-value=53 Score=24.69 Aligned_cols=68 Identities=16% Similarity=-0.017 Sum_probs=52.9
Q ss_pred eeCCCceEEEeecCCCCCCChhhcceeEEEEeeeChhhHHHHHHHHHHhhhCCcHHHHHHHHHHHHHH
Q psy17980 160 DYDPKFRLYLTTKLPNPHYLPETCIQIGLINFTVTSSGLEEQLMADVVRLERPDLEQERNQVIVTMNK 227 (252)
Q Consensus 160 eynpnFRLYLtTKL~nPhy~PEV~SkvTVINFTVT~eGLEeQLLsiVV~~ErPELEeqR~eLike~ae 227 (252)
..+++|.++.+|..+.-...|....++..+.|......-..+.+..++..|..+++.+-.+.+...++
T Consensus 131 ~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~l~~ia~~s~ 198 (239)
T d1ixsb2 131 LELPRFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSR 198 (239)
T ss_dssp EECCCCEEEEEESCCSSCSCGGGGGCSEEEECCCCCHHHHHHHHHHHHGGGCCCBCHHHHHHHHHHTT
T ss_pred cCCCCEEEEeeccCcccccchhhcccceeeEeeccChhhhhHHHHHHHHHhCCccchHHHHHHHHHcC
Confidence 45789999988876655566778888999999988888888888899999998887766655555443
No 3
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=31.82 E-value=48 Score=24.82 Aligned_cols=53 Identities=25% Similarity=0.258 Sum_probs=36.3
Q ss_pred eCCCceEEEeecCCCCCCChhhcceeEEEEeeeChhhHHHHHHHHHHhhhCCcH
Q psy17980 161 YDPKFRLYLTTKLPNPHYLPETCIQIGLINFTVTSSGLEEQLMADVVRLERPDL 214 (252)
Q Consensus 161 ynpnFRLYLtTKL~nPhy~PEV~SkvTVINFTVT~eGLEeQLLsiVV~~ErPEL 214 (252)
+.++.+++++|.... ..+|.+.+|+..|+|..-...--.+.|..++..|.-.+
T Consensus 158 ~~~~~~~Il~tn~~~-~i~~~l~sR~~~i~~~~~~~~~~~~~l~~i~~~e~~~~ 210 (252)
T d1sxje2 158 YSKNIRLIMVCDSMS-PIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQL 210 (252)
T ss_dssp STTTEEEEEEESCSC-SSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEE
T ss_pred ccccccceeeecccc-chhhhhhcchheeeecccchhhHHHHHHHHHHHcCCCC
Confidence 456667788886654 56777889999999975444444455677777776444
No 4
>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}
Probab=24.21 E-value=22 Score=27.30 Aligned_cols=35 Identities=14% Similarity=0.156 Sum_probs=25.1
Q ss_pred CCCceEEEeecCCCCCCChhhcceeEEEEee-eChhh
Q psy17980 162 DPKFRLYLTTKLPNPHYLPETCIQIGLINFT-VTSSG 197 (252)
Q Consensus 162 npnFRLYLtTKL~nPhy~PEV~SkvTVINFT-VT~eG 197 (252)
.++-.++++|...+ ...|-+.||+.+|+|. ++.+.
T Consensus 136 ~~~~~fIl~t~~~~-~ll~tI~SRc~~i~~~~~~~~~ 171 (207)
T d1a5ta2 136 PAETWFFLATREPE-RLLATLRSRCRLHYLAPPPEQY 171 (207)
T ss_dssp CTTEEEEEEESCGG-GSCHHHHTTSEEEECCCCCHHH
T ss_pred cccceeeeeecChh-hhhhhhcceeEEEecCCCCHHH
Confidence 34555677777554 6788899999999997 44443
No 5
>d1ivsa1 a.2.7.3 (A:797-862) Valyl-tRNA synthetase (ValRS) C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=20.42 E-value=71 Score=20.40 Aligned_cols=27 Identities=11% Similarity=0.176 Sum_probs=20.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17980 213 DLEQERNQVIVTMNKDKSMLKEIEDNI 239 (252)
Q Consensus 213 ELEeqR~eLike~ae~K~~Lk~LED~L 239 (252)
+++.++..|.++....+..+..++..|
T Consensus 1 D~~~E~~RL~K~l~kl~~~i~~~~~kL 27 (66)
T d1ivsa1 1 DVEEWRRRQEKRLKELLALAERSQRKL 27 (66)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467778888888888888887777665
No 6
>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=18.82 E-value=70 Score=23.66 Aligned_cols=59 Identities=15% Similarity=0.169 Sum_probs=40.7
Q ss_pred CCCceEEEeecCCCCCCChhhcceeEEEEeeeChhhHHHHHHHHHHhhhCCcHHHHHHHH
Q psy17980 162 DPKFRLYLTTKLPNPHYLPETCIQIGLINFTVTSSGLEEQLMADVVRLERPDLEQERNQV 221 (252)
Q Consensus 162 npnFRLYLtTKL~nPhy~PEV~SkvTVINFTVT~eGLEeQLLsiVV~~ErPELEeqR~eL 221 (252)
.++.+++++|..+ ....+.+.+++..++|..-...--.+.|..++..|.=.+..+--+.
T Consensus 127 ~~~~~~~~~~~~~-~~i~~~i~sr~~~i~~~~~~~~~i~~~l~~I~~~e~i~i~~~~l~~ 185 (227)
T d1sxjc2 127 TKNTRFCVLANYA-HKLTPALLSQCTRFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKA 185 (227)
T ss_dssp TTTEEEEEEESCG-GGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHTTTCCBCHHHHHH
T ss_pred ccceeeccccCcH-HHhHHHHHHHHhhhccccccccccccccccccccccccCCHHHHHH
Confidence 3455566666544 4677889999999999875555555667778888877775554333
No 7
>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=17.29 E-value=1.8e+02 Score=21.35 Aligned_cols=73 Identities=8% Similarity=0.171 Sum_probs=48.4
Q ss_pred CceEEEeecCCCCCCChhhcceeEEEEeeeChhhHHHHHHHHHHhhhCCcHHHHHHHHHHHHH--HHHHHHHHHHH
Q psy17980 164 KFRLYLTTKLPNPHYLPETCIQIGLINFTVTSSGLEEQLMADVVRLERPDLEQERNQVIVTMN--KDKSMLKEIED 237 (252)
Q Consensus 164 nFRLYLtTKL~nPhy~PEV~SkvTVINFTVT~eGLEeQLLsiVV~~ErPELEeqR~eLike~a--e~K~~Lk~LED 237 (252)
..++.++|. ......+.+.+++.+|.|.--...--...|..++..|.-++..+--+.+...+ ..+..|..||.
T Consensus 131 ~~~~i~~~~-~~~~i~~~l~sr~~~i~~~~~~~~~i~~~l~~i~~~e~~~i~~~~l~~I~~~s~Gd~R~ai~~Lq~ 205 (224)
T d1sxjb2 131 STRFAFACN-QSNKIIEPLQSQCAILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQS 205 (224)
T ss_dssp TEEEEEEES-CGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ceeeeeccC-chhhhhhHHHHHHHHhhhcccchhhhHHHHHHHHHhcccCCCHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 334445554 33466778999999999988666666666778888888888776555544433 34555666654
No 8
>d1j75a_ a.4.5.19 (A:) Dlm-1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=16.77 E-value=16 Score=24.22 Aligned_cols=16 Identities=31% Similarity=0.569 Sum_probs=13.3
Q ss_pred HHHHHHHHHHhcCCCC
Q psy17980 234 EIEDNILRLLFTSEGE 249 (252)
Q Consensus 234 ~LED~LL~~LS~S~g~ 249 (252)
+||.+||+.|+++.|.
T Consensus 1 ~LEQkILQVL~dagsp 16 (57)
T d1j75a_ 1 NLEQKILQVLSDDGGP 16 (57)
T ss_dssp CHHHHHHHHHHHHCSC
T ss_pred CHHHHHHHHHHhcCCc
Confidence 4899999999987664
No 9
>d1g2913 b.40.6.3 (1:241-301) Maltose transport protein MalK, C-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}
Probab=13.59 E-value=35 Score=21.67 Aligned_cols=27 Identities=26% Similarity=0.535 Sum_probs=16.4
Q ss_pred CCCCCCCCcccCCCCCeEEEEeCCeeeeeC
Q psy17980 133 SPPMNLTNFFYPPSGGRTLIKLGDTVVDYD 162 (252)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~veyn 162 (252)
||+||..+-.... +| .+.+++..+.+.
T Consensus 2 SP~MNfi~~~v~~-~~--~~~~~~~~~~l~ 28 (61)
T d1g2913 2 SPPMNFLDAIVTE-DG--FVDFGEFRLKLL 28 (61)
T ss_dssp SSCCEEEEEEECT-TS--EEECSSCEEECC
T ss_pred CCCceeEEEEEec-CC--eEEeCCEEEEcC
Confidence 7999988776543 23 346555555543
No 10
>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=13.33 E-value=1.3e+02 Score=21.88 Aligned_cols=74 Identities=11% Similarity=0.112 Sum_probs=44.9
Q ss_pred eCCCceEEEeecCCCCCCChhhcceeEEEEee-eChhhHHHHHHHHHHhhhCCcHHHHHHHHHHHH-HH-HHHHHHHHH
Q psy17980 161 YDPKFRLYLTTKLPNPHYLPETCIQIGLINFT-VTSSGLEEQLMADVVRLERPDLEQERNQVIVTM-NK-DKSMLKEIE 236 (252)
Q Consensus 161 ynpnFRLYLtTKL~nPhy~PEV~SkvTVINFT-VT~eGLEeQLLsiVV~~ErPELEeqR~eLike~-ae-~K~~Lk~LE 236 (252)
+....++.+++...+ ...+.+.+|+.+|+|. .+.+.+.+ .|..++..|.-.+..+--+.+.+. .+ .+..+..||
T Consensus 135 ~~~~~~~i~~~~~~~-~~~~~l~sr~~~i~f~~~~~~~~~~-~L~~i~~~e~i~i~~~~l~~ia~~s~gd~R~ai~~L~ 211 (237)
T d1sxjd2 135 YSGVTRFCLICNYVT-RIIDPLASQCSKFRFKALDASNAID-RLRFISEQENVKCDDGVLERILDISAGDLRRGITLLQ 211 (237)
T ss_dssp TTTTEEEEEEESCGG-GSCHHHHHHSEEEECCCCCHHHHHH-HHHHHHHTTTCCCCHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred ccccccccccccccc-cccccccchhhhhccccccccccch-hhhhhhhhhcCcCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 344555666665554 5667799999999998 45555555 466777777766655443333332 22 344455554
Done!