RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17980
(252 letters)
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 174 bits (442), Expect = 8e-50
Identities = 38/106 (35%), Positives = 65/106 (61%)
Query: 146 SGGRTLIKLGDTVVDYDPKFRLYLTTKLPNPHYLPETCIQIGLINFTVTSSGLEEQLMAD 205
GGR LI+LGD VD+ P F ++L T+ P H+ P+ C ++ +NFTVT S L+ Q + +
Sbjct: 2256 KGGRILIRLGDQDVDFSPSFMIFLFTRDPTAHFTPDLCSRVTFVNFTVTPSSLQSQCLHE 2315
Query: 206 VVRLERPDLEQERNQVIVTMNKDKSMLKEIEDNILRLLFTSEGEIL 251
++ ERPD ++R+ ++ + + L+ +E ++L L + G IL
Sbjct: 2316 ALKTERPDTHKKRSDLLKIQGEFQVKLRILEKSLLNALSQASGNIL 2361
Score = 77.6 bits (191), Expect = 2e-16
Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 1 MESPNGLKILKLTDSTYMRTMEACVRLGLPVLLEDVGETLDPALGPILLKQTYTKGKT 58
+ + DS++M+ +E+ +R G P+L++DV E +DP L P+L K+ KG
Sbjct: 2203 QYADKKITKTSFLDSSFMKNLESALRFGCPLLVQDV-ENIDPVLNPVLNKEIRKKGGR 2259
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain
cytoplasmic; motor protein, AAA+ protein, ASCE protein,
P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma
japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Length = 2695
Score = 168 bits (427), Expect = 1e-47
Identities = 24/106 (22%), Positives = 52/106 (49%)
Query: 146 SGGRTLIKLGDTVVDYDPKFRLYLTTKLPNPHYLPETCIQIGLINFTVTSSGLEEQLMAD 205
+G R +++GD VD F+L++ + P+ ++ L++F +E ++
Sbjct: 2076 AGNRVTVEIGDHEVDVSGDFKLFIHSCDPSGDIPIFLRSRVRLVHFVTNKESIETRIFDI 2135
Query: 206 VVRLERPDLEQERNQVIVTMNKDKSMLKEIEDNILRLLFTSEGEIL 251
+ E +++++R +I + K LK +E +L L S+G +L
Sbjct: 2136 TLTEENAEMQRKREDLIKLNTEYKLKLKNLEKRLLEELNNSQGNML 2181
Score = 71.0 bits (174), Expect = 4e-14
Identities = 12/54 (22%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 5 NGLKILKLTDSTYMRTMEACVRLGLPVLLEDVGETLDPALGPILLKQTYTKGKT 58
N +L + +++ +E +R G V+++D GE DP + ++ ++ G
Sbjct: 2027 NKTVLLSFLEEGFVKRLENAIRFGSVVIIQD-GEFFDPIISRLISREFNHAGNR 2079
Score = 26.7 bits (59), Expect = 9.3
Identities = 7/27 (25%), Positives = 12/27 (44%), Gaps = 1/27 (3%)
Query: 162 DPKFRLYLTTKLPNPHYLPETCIQIGL 188
KF++++T L LP +Q
Sbjct: 2471 HEKFKMFMTCHLTGDK-LPAPLLQRTD 2496
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 50.4 bits (120), Expect = 2e-07
Identities = 47/228 (20%), Positives = 77/228 (33%), Gaps = 70/228 (30%)
Query: 28 GLPVL--LEDVGETLD-------PALGP-ILLKQT--Y-----TKGKTPRRSYADQAYIH 70
GL +L LE+ T D P P I + Q Y G TP + Y+
Sbjct: 212 GLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRS---YLK 268
Query: 71 GMVFTNRACKMTKGFLSVCFLSEIKIWTRNSHHGSLFYDETRYCALSEGGHILFSLCTSG 130
G T + +G ++ ++E W F+ R A+ +LF + G
Sbjct: 269 GA--TGHS----QGLVTAVAIAETDSWES-------FFVSVRK-AI----TVLFFI---G 307
Query: 131 PHS----PPMNLTNFFYPPSGGRTLIKLGDT-------VVDYDPKFRLYLTTKLPNPHYL 179
P +L PPS ++ + + + + K N H L
Sbjct: 308 VRCYEAYPNTSL-----PPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKT-NSH-L 360
Query: 180 PETC-IQIGLIN----FTVTSSGLEEQLMADVVRLER----PDLEQER 218
P ++I L+N V+ G + L + L + L+Q R
Sbjct: 361 PAGKQVEISLVNGAKNLVVS--GPPQSLYGLNLTLRKAKAPSGLDQSR 406
Score = 27.7 bits (61), Expect = 5.1
Identities = 11/52 (21%), Positives = 18/52 (34%), Gaps = 12/52 (23%)
Query: 194 TSSGLEEQLMAD----VVRLERPDLEQERNQVIVTMNKDKSMLKEIEDNILR 241
++ E L+ V L P + +QV+ L E E+ L
Sbjct: 54 PTTPAE--LVGKFLGYVSSLVEPSKVGQFDQVL------NLCLTEFENCYLE 97
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 41.4 bits (96), Expect = 2e-04
Identities = 36/308 (11%), Positives = 75/308 (24%), Gaps = 87/308 (28%)
Query: 14 DSTYMRTMEACVRLGLPVLLEDV-GETLDPALGPILLK----------QTYTKGKTPR-- 60
+ + +E +R+ L+ + E P++ + Q + K R
Sbjct: 76 EEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQ 135
Query: 61 ---------RSYADQAYI--HGM------VFTNRACKMTKGFLSVCFLSEIKIW----TR 99
+ G+ C K + +I W
Sbjct: 136 PYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYK--VQCKMDFKI-FWLNLKNC 192
Query: 100 NSHHGSLFYDETRYCALSEGGHILFSLCTSGPHSPPMN-------LTNFFYPPSGGRTLI 152
NS L + + + + + L L+
Sbjct: 193 NSPETVLEMLQKLLYQIDPNWTSR----SDHSSNIKLRIHSIQAELRRLLKSKPYENCLL 248
Query: 153 KLGD----TVVD-YDPKFRLYLTTK-------LPNPHYLPETCIQIGLINFTVTSSGLEE 200
L + + ++ ++ LTT+ L + + T +
Sbjct: 249 VLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHH-SMTLTPDEV---K 304
Query: 201 QLMADVVRLERPDLEQE---------------------RNQVIVTMNKDKSMLKEIEDNI 239
L+ + DL +E +N DK L I ++
Sbjct: 305 SLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDK--LTTIIESS 362
Query: 240 LRLLFTSE 247
L +L +E
Sbjct: 363 LNVLEPAE 370
>2y9w_A Tyrosinase, polyphenol oxidase; oxidoreductase, copper-containing,
pigmentation, type-3 COPP protein; HET: PGE; 2.30A
{Agaricus bisporus} PDB: 2y9x_A
Length = 391
Score = 29.2 bits (64), Expect = 1.3
Identities = 12/87 (13%), Positives = 24/87 (27%), Gaps = 9/87 (10%)
Query: 49 LKQTYTKGKTPRRSYADQAYIHGMVFTNRACKMTKGFLSVCFLSEIKIWTRNSHHGSLFY 108
L+ + ++ S+ IHG+ +T + + +H LF
Sbjct: 39 LQVLQARDQSDYSSFFQLGGIHGLPYTE--------WAKAQPQLHLYKANYCTHGTVLFP 90
Query: 109 DETRYCALSEGGHILFSLCTSGPHSPP 135
R S L+ +
Sbjct: 91 TWHRAY-ESTWEQTLWEAAGTVAQRFT 116
>2e63_A KIAA1787 protein; structure genomics, neuralized domain, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 170
Score = 28.4 bits (63), Expect = 1.4
Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 6/53 (11%)
Query: 56 GKTPRRSYADQAYIHGMVFTNRACKMTKGFLSVCFLSEIKIWTRNSHHGSLFY 108
G+T RR Q + HG+V + + + F +V ++ W+ GS+
Sbjct: 23 GRTARRQQPGQEFNHGLVLSREPLRDGRVF-TVRIDRKVNSWS-----GSIEI 69
>1js8_A Hemocyanin; glycoprotein, mollusc, oxygen-transport, thioether
bond, OXY storage-transport complex; HET: NDG NAG BMA
MAN; 2.30A {Octopus dofleini} SCOP: a.86.1.1 b.112.1.1
Length = 394
Score = 28.7 bits (63), Expect = 1.8
Identities = 17/140 (12%), Positives = 31/140 (22%), Gaps = 21/140 (15%)
Query: 55 KGKTPRRSYADQAYIHGMVFTNRACKMTKGFLSVCFLSEIKIWTRNSHHGSLFYDETR-Y 113
+ T Y A HG+ + C + H F + R
Sbjct: 26 QADTSDNGYQKIASYHGIPLS-------------CHYENGTAYACCQHGMVTFPNWHRLL 72
Query: 114 CALSEG----GHILFSLCTSGPHSPPMNLTNFFYPP---SGGRTLIKLGDTVVDYDPKFR 166
E + + NL S I + +T P+ +
Sbjct: 73 TKQMEDALVAKGSHVGIPYWDWTTTFANLPVLVTEEKDNSFHHAHIDVANTDTTRSPRAQ 132
Query: 167 LYLTTKLPNPHYLPETCIQI 186
L+ + +
Sbjct: 133 LFDDPDKGDKSFFYRQIALA 152
>2g04_A Probable fatty-acid-COA racemase FAR; isomerase; 2.70A
{Mycobacterium tuberculosis}
Length = 359
Score = 28.3 bits (64), Expect = 2.8
Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Query: 204 ADVVRLERPDLEQERNQVIVTMNKDK-SM---LKEIEDNILRLL 243
ADVVR+ RP ++ +++ K + +K +L L
Sbjct: 33 ADVVRVRRPGGLTMPSEDRDLLHRGKRIVDLDVKTQPQAMLELA 76
>3irs_A Uncharacterized protein BB4693; structural genomics, PSI-2, protein
structure initiative, TI protein; HET: GOL; 1.76A
{Bordetella bronchiseptica} PDB: 3k4w_A
Length = 291
Score = 27.5 bits (61), Expect = 4.1
Identities = 8/45 (17%), Positives = 16/45 (35%), Gaps = 4/45 (8%)
Query: 10 LKLTDSTYMRTMEACVRLGLPVLLEDVGETLDPAL---GPILLKQ 51
+ + D C G+PV++ G P + P + +
Sbjct: 133 MHVDDRRLYPLYAFCEDNGIPVIM-MTGGNAGPDITYTNPEHIDR 176
>3idw_A Actin cytoskeleton-regulatory complex protein SLA; clathrin
adaptor, endocytosis, SAM domain, yeast, actin-BIND
membrane, endosome; 1.85A {Saccharomyces cerevisiae}
Length = 72
Score = 25.6 bits (56), Expect = 4.7
Identities = 8/25 (32%), Positives = 16/25 (64%)
Query: 228 DKSMLKEIEDNILRLLFTSEGEILA 252
+ M+ +I +++LR L EG+I+
Sbjct: 32 TEDMMPDINNSMLRTLGLREGDIVR 56
>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA
binding, structural genomics, BSGC structure funded by
NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB:
2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A
Length = 227
Score = 26.6 bits (58), Expect = 7.6
Identities = 6/29 (20%), Positives = 10/29 (34%)
Query: 85 FLSVCFLSEIKIWTRNSHHGSLFYDETRY 113
+ + +I T+N G Y E
Sbjct: 13 YTVIDDDGSERIATKNLVPGQRVYGERVI 41
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil
(dimeric, parallel), familial hypertrophic
cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo
sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Length = 129
Score = 26.0 bits (57), Expect = 8.8
Identities = 11/45 (24%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 200 EQLMADVVRLE--RPDLEQERNQVIVTMNKDKSMLKEIEDNILRL 242
E+ A LE L QE+N + + + ++ L + E+ +L
Sbjct: 30 EKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQL 74
>2r3s_A Uncharacterized protein; methyltransferase domain, structural
genomics, joint center structural genomics, JCSG,
protein structure initiative; HET: MSE; 2.15A {Nostoc
punctiforme}
Length = 335
Score = 26.6 bits (59), Expect = 8.8
Identities = 6/42 (14%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
Query: 1 MESPNGLKILKLTDS-TYMRTMEACVRLGLPVLLEDVGETLD 41
M +P+ ++ ++A V L + + E+
Sbjct: 2 MSTPSPALFFNTVNAYQRSAAIKAAVELNVFTAISQGIESSQ 43
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.138 0.412
Gapped
Lambda K H
0.267 0.0625 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,896,692
Number of extensions: 232461
Number of successful extensions: 495
Number of sequences better than 10.0: 1
Number of HSP's gapped: 493
Number of HSP's successfully gapped: 20
Length of query: 252
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 161
Effective length of database: 4,160,982
Effective search space: 669918102
Effective search space used: 669918102
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.6 bits)