RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17980
         (252 letters)



>d1js8a1 a.86.1.1 (A:2503-2791) Mollusc hemocyanin {Giant octopus
           (Octopus dofleini) [TaxId: 267067]}
          Length = 289

 Score = 30.6 bits (68), Expect = 0.16
 Identities = 17/134 (12%), Positives = 36/134 (26%), Gaps = 13/134 (9%)

Query: 55  KGKTPRRSYADQAYIHGMVFTNRACKMTKGFL----SVCFLSEIKIWTRNSHHGSLFYDE 110
           +  T    Y   A  HG+  +      T         V F +  ++ T          ++
Sbjct: 26  QADTSDNGYQKIASYHGIPLSCHYENGTAYACCQHGMVTFPNWHRLLT-------KQMED 78

Query: 111 TRYCALSEGGHILFSLCTSGPHSPPMNLTNFFYPPSGGRTLIKLGDTVVDYDPKFRLYLT 170
                 S  G   +   T+  + P +               I + +T     P+ +L+  
Sbjct: 79  ALVAKGSHVGIPYWDWTTTFANLPVLVTEEKDNSFHHAH--IDVANTDTTRSPRAQLFDD 136

Query: 171 TKLPNPHYLPETCI 184
               +  +      
Sbjct: 137 PDKGDKSFFYRQIA 150


>d2puza1 b.92.1.10 (A:17-79,A:381-420) Imidazolonepropionase
           {Agrobacterium tumefaciens [TaxId: 358]}
          Length = 103

 Score = 26.8 bits (59), Expect = 1.2
 Identities = 5/20 (25%), Positives = 10/20 (50%)

Query: 218 RNQVIVTMNKDKSMLKEIED 237
           RN  + T+N     +  +E+
Sbjct: 6   RNAQLATLNPAMDGIGAVEN 25


>d2yzca2 d.96.1.4 (A:142-297) Urate oxidase (uricase) {Arthrobacter
           globiformis [TaxId: 1665]}
          Length = 156

 Score = 25.5 bits (56), Expect = 5.2
 Identities = 12/55 (21%), Positives = 23/55 (41%), Gaps = 3/55 (5%)

Query: 138 LTNF--FYPPSGGRTLIKLGDTVVDYDPKFRLYLTTKLPNPHYLPETCIQIGLIN 190
           L  F   +  +  +T+ ++G  V++  P+    +   LPN H+        G  N
Sbjct: 70  LKAFAETHSLALQQTMYEMGRAVIETHPEID-EIKMSLPNKHHFLVDLQPFGQDN 123


>d3c7ba3 d.134.1.1 (A:167-238,A:305-417) Dissimilatory sulfite
           reductase subunit alpha, DsrA {Archaeoglobus fulgidus
           [TaxId: 2234]}
          Length = 185

 Score = 25.4 bits (55), Expect = 5.5
 Identities = 7/27 (25%), Positives = 10/27 (37%)

Query: 16  TYMRTMEACVRLGLPVLLEDVGETLDP 42
              R  E   R G+   L+ +G   D 
Sbjct: 125 FRERIGELIWRKGMREFLKVIGREADV 151


>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga
           maritima [TaxId: 2336]}
          Length = 266

 Score = 25.1 bits (54), Expect = 8.5
 Identities = 5/20 (25%), Positives = 8/20 (40%)

Query: 152 IKLGDTVVDYDPKFRLYLTT 171
           +K GD V+        +L  
Sbjct: 11  LKPGDRVLLSFEDESEFLVD 30


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.138    0.412 

Gapped
Lambda     K      H
   0.267   0.0535    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 949,163
Number of extensions: 44748
Number of successful extensions: 92
Number of sequences better than 10.0: 1
Number of HSP's gapped: 92
Number of HSP's successfully gapped: 9
Length of query: 252
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 169
Effective length of database: 1,268,006
Effective search space: 214293014
Effective search space used: 214293014
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.3 bits)