Query psy17986
Match_columns 147
No_of_seqs 108 out of 161
Neff 5.8
Searched_HMMs 46136
Date Fri Aug 16 19:23:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17986.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17986hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0396|consensus 100.0 3.1E-30 6.8E-35 219.4 13.0 127 8-147 59-189 (389)
2 KOG2817|consensus 98.4 6.8E-06 1.5E-10 71.5 13.1 70 72-147 118-192 (394)
3 smart00667 LisH Lissencephaly 98.2 2.4E-06 5.1E-11 48.3 3.5 32 69-100 2-33 (34)
4 PF08513 LisH: LisH; InterPro 97.8 3.3E-05 7.1E-10 43.1 3.9 27 71-97 1-27 (27)
5 KOG2659|consensus 96.4 0.0056 1.2E-07 50.2 4.9 61 71-137 27-88 (228)
6 smart00668 CTLH C-terminal to 95.6 0.015 3.3E-07 36.3 3.1 33 108-146 2-37 (58)
7 COG5109 Uncharacterized conser 84.6 2.3 5.1E-05 36.9 5.4 69 72-146 102-173 (396)
8 KOG4603|consensus 83.1 22 0.00047 28.5 9.9 95 2-100 75-200 (201)
9 PF01726 LexA_DNA_bind: LexA D 68.4 18 0.00039 23.8 5.0 35 69-103 7-41 (65)
10 PF10607 CLTH: CTLH/CRA C-term 61.9 22 0.00048 25.8 5.0 49 83-137 13-64 (145)
11 PF07035 Mic1: Colon cancer-as 59.9 37 0.00081 26.5 6.2 47 65-111 82-129 (167)
12 KOG2659|consensus 59.4 22 0.00047 29.4 4.9 65 72-142 65-132 (228)
13 PF04097 Nic96: Nup93/Nic96; 55.7 11 0.00025 34.7 3.1 20 75-94 115-134 (613)
14 PF14823 Sirohm_synth_C: Siroh 50.4 23 0.0005 23.8 3.2 37 12-52 4-40 (70)
15 PF01125 G10: G10 protein; In 48.5 12 0.00027 28.8 1.8 29 62-90 59-88 (145)
16 KOG2057|consensus 43.6 41 0.0009 29.7 4.4 22 65-86 75-96 (499)
17 PHA02701 ORF020 dsRNA-binding 43.5 18 0.00039 28.9 2.0 28 74-101 6-33 (183)
18 PF05205 COMPASS-Shg1: COMPASS 42.1 1.3E+02 0.0027 21.5 6.8 78 19-109 13-90 (106)
19 PF12777 MT: Microtubule-bindi 41.3 1.3E+02 0.0029 25.6 7.2 68 12-86 244-320 (344)
20 PF09388 SpoOE-like: Spo0E lik 38.5 89 0.0019 18.7 5.8 37 37-81 6-42 (45)
21 PRK01631 hypothetical protein; 38.1 55 0.0012 22.6 3.5 40 12-51 1-40 (76)
22 KOG4304|consensus 36.7 1.2E+02 0.0027 25.1 6.1 83 8-105 31-131 (250)
23 cd03571 ENTH_epsin ENTH domain 35.3 77 0.0017 23.4 4.2 46 34-96 36-81 (123)
24 PF07721 TPR_4: Tetratricopept 34.7 72 0.0016 16.6 3.2 22 75-96 5-26 (26)
25 PF14698 ASL_C2: Argininosucci 34.6 61 0.0013 21.4 3.3 27 77-104 7-41 (70)
26 KOG4594|consensus 34.5 48 0.001 28.6 3.4 32 67-98 14-45 (354)
27 PF04568 IATP: Mitochondrial A 33.6 1.1E+02 0.0024 22.1 4.6 28 17-44 72-99 (100)
28 COG3629 DnrI DNA-binding trans 33.0 2.4E+02 0.0052 23.9 7.3 90 5-107 134-231 (280)
29 PF11768 DUF3312: Protein of u 32.9 86 0.0019 29.1 4.9 38 72-114 495-532 (545)
30 PF12854 PPR_1: PPR repeat 32.7 72 0.0016 17.7 3.0 23 74-96 10-32 (34)
31 KOG2056|consensus 31.7 1.4E+02 0.0029 26.1 5.7 40 31-87 53-92 (336)
32 PF13875 DUF4202: Domain of un 31.1 2.8E+02 0.006 22.2 8.8 69 38-107 51-126 (185)
33 PF13838 Clathrin_H_link: Clat 27.5 1.7E+02 0.0036 19.5 4.4 40 68-112 8-47 (66)
34 PF13041 PPR_2: PPR repeat fam 25.4 1E+02 0.0022 18.0 2.9 22 76-97 8-29 (50)
35 PF05979 DUF896: Bacterial pro 25.1 2.2E+02 0.0047 19.0 4.9 40 13-52 1-40 (65)
36 COG1777 Predicted transcriptio 24.9 3.9E+02 0.0085 21.9 8.1 70 10-97 118-187 (217)
37 PF01417 ENTH: ENTH domain; I 24.7 1E+02 0.0022 22.0 3.3 38 67-104 55-93 (125)
38 PF13374 TPR_10: Tetratricopep 24.5 1.1E+02 0.0024 16.4 2.8 21 76-96 7-27 (42)
39 KOG3647|consensus 24.3 4.7E+02 0.01 22.6 7.8 65 13-85 115-189 (338)
40 PF11026 DUF2721: Protein of u 24.1 1.3E+02 0.0028 22.1 3.8 37 13-49 24-64 (130)
41 COG1322 Predicted nuclease of 22.7 2.4E+02 0.0052 25.5 5.8 69 17-86 139-214 (448)
42 PF05120 GvpG: Gas vesicle pro 22.7 2.7E+02 0.0057 19.2 5.6 49 24-76 17-65 (79)
43 KOG2168|consensus 22.2 79 0.0017 30.8 2.8 23 76-98 330-352 (835)
44 TIGR00756 PPR pentatricopeptid 21.3 1.3E+02 0.0029 15.2 2.8 21 76-96 5-25 (35)
45 PF13428 TPR_14: Tetratricopep 20.9 1.5E+02 0.0033 16.9 3.0 22 75-96 5-26 (44)
46 PF02646 RmuC: RmuC family; I 20.9 3.5E+02 0.0075 22.7 6.2 83 11-93 7-99 (304)
47 PF13606 Ank_3: Ankyrin repeat 20.4 64 0.0014 17.5 1.2 10 76-85 16-25 (30)
48 PF00804 Syntaxin: Syntaxin; 20.2 2.7E+02 0.0058 18.3 4.7 31 20-50 41-71 (103)
49 PF06156 DUF972: Protein of un 20.0 3.5E+02 0.0075 19.5 5.3 38 12-49 17-57 (107)
No 1
>KOG0396|consensus
Probab=99.97 E-value=3.1e-30 Score=219.43 Aligned_cols=127 Identities=23% Similarity=0.386 Sum_probs=117.5
Q ss_pred hhhhhhhHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhh-hhcCCCCCCccChHHHHHHHHHHHHHHHHHHHHhhCc
Q psy17986 8 SYEWNGEDSNTGKAVRTWAGESIGEELQAGHVIKRRIEHLKE-HSGNVLSNTSQSEASINQWKKTRLDRMLIEYFLRKGY 86 (147)
Q Consensus 8 ~~~~~~~~ierl~~LKrKl~~~~~eE~~~~~~~k~Ri~hL~e-l~~~~~~t~~~~~~~~~~W~~~RldRlivDyLLR~Gy 86 (147)
.-..+..+|.|++.+|||+++.++.|.+++++|++||+|+++ +... .+.+...|+++|+||+|||||+|+||
T Consensus 59 ~~~~id~Li~kv~~~krk~e~~iq~e~~~~~~iksRid~m~e~~~~d-------~~~~~~~w~r~~l~r~vvdhmlr~gy 131 (389)
T KOG0396|consen 59 TVSLIDRLIRKVQCLKRKLEEYIQSEEEQLKRIKSRIDFMHEEISSD-------TPANSRKWPRNKLDRFVVDHMLRNGY 131 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-------CchHHHHhHHHHHHHHHHHHHHHcCc
Confidence 345678899999999999999999999999999999999996 2222 35788999999999999999999999
Q ss_pred HHHHHHHHHHcCCcccccHHHHHHHHHHHHHHhcCCCCCCCchhhhHHHHH---hhhhcCCCCC
Q psy17986 87 YSTAQKLAQASNITDLTNIDLREWIKGIETNVDSLSPVSSGLDIKRHTWLR---TSLRRNPSKI 147 (147)
Q Consensus 87 ~~tA~~La~~~~IedLvDidiF~~~~~Ie~sL~~~d~~~~~~~~~~l~W~~---~~Lkk~~s~~ 147 (147)
|++|..|+++++|+||||+|+|.+++.|.+||.++++. |||.||. ..|||.+|++
T Consensus 132 ~~~A~~L~K~s~ledlvD~Dv~~~~~~I~~sll~~~l~------~~Lswc~ehk~~LkK~~S~l 189 (389)
T KOG0396|consen 132 FGAAVLLGKKSQLEDLVDSDVYKRAYGIRDSLLAGELE------PALSWCKEHKVELKKEESSL 189 (389)
T ss_pred hhHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHhcchH------HHHHHHHHHHHHHHhccchh
Confidence 99999999999999999999999999999999999999 9999999 7899999975
No 2
>KOG2817|consensus
Probab=98.41 E-value=6.8e-06 Score=71.52 Aligned_cols=70 Identities=13% Similarity=0.207 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHhhCcHHHHHHHHHHcCCccc-cc-HHHHHHHHHHHHHHhcCCCCCCCchhhhHHHHH---hhhhcCCCC
Q psy17986 72 RLDRMLIEYFLRKGYYSTAQKLAQASNITDL-TN-IDLREWIKGIETNVDSLSPVSSGLDIKRHTWLR---TSLRRNPSK 146 (147)
Q Consensus 72 RldRlivDyLLR~Gy~~tA~~La~~~~IedL-vD-idiF~~~~~Ie~sL~~~d~~~~~~~~~~l~W~~---~~Lkk~~s~ 146 (147)
.++-.||.|++|+|.++.|..|.++.|+..= .+ ..-|.+.++|..+|..+|++ |||+||. .+|....|.
T Consensus 118 ~ln~ai~~h~~rqGm~dv~~~l~~Ea~~~~~~~~~~~~F~el~~Iv~~lke~Dl~------~aLeWa~~~~~~L~~~~s~ 191 (394)
T KOG2817|consen 118 VLNEAIVYHFYRQGMDDVGECLIKEAGLSEDESKSRTEFVELNQIVEALKERDLE------PALEWAESNRQKLKEKSSS 191 (394)
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHhccch------hHHHHHHHhhhhhcccccc
Confidence 3899999999999999999999999999853 33 77799999999999999999 9999999 578887775
Q ss_pred C
Q psy17986 147 I 147 (147)
Q Consensus 147 ~ 147 (147)
|
T Consensus 192 L 192 (394)
T KOG2817|consen 192 L 192 (394)
T ss_pred H
Confidence 4
No 3
>smart00667 LisH Lissencephaly type-1-like homology motif. Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly.
Probab=98.18 E-value=2.4e-06 Score=48.28 Aligned_cols=32 Identities=38% Similarity=0.809 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHhhCcHHHHHHHHHHcCCc
Q psy17986 69 KKTRLDRMLIEYFLRKGYYSTAQKLAQASNIT 100 (147)
Q Consensus 69 ~~~RldRlivDyLLR~Gy~~tA~~La~~~~Ie 100 (147)
.+..++++|++||.++||.+||..|.++.++.
T Consensus 2 ~~~~l~~lI~~yL~~~g~~~ta~~l~~e~~~~ 33 (34)
T smart00667 2 SRSELNRLILEYLLRNGYEETAETLQKESGLS 33 (34)
T ss_pred cHHHHHHHHHHHHHHcCHHHHHHHHHHHhCCC
Confidence 35679999999999999999999999999875
No 4
>PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions. The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B.
Probab=97.83 E-value=3.3e-05 Score=43.15 Aligned_cols=27 Identities=26% Similarity=0.666 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHhhCcHHHHHHHHHHc
Q psy17986 71 TRLDRMLIEYFLRKGYYSTAQKLAQAS 97 (147)
Q Consensus 71 ~RldRlivDyLLR~Gy~~tA~~La~~~ 97 (147)
..+|++|.|||..+||.+||..|++++
T Consensus 1 ~~Ln~lI~~YL~~~Gy~~tA~~f~~Ea 27 (27)
T PF08513_consen 1 EELNQLIYDYLVENGYKETAKAFAKEA 27 (27)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHCCcHHHHHHHHhcC
Confidence 368999999999999999999999874
No 5
>KOG2659|consensus
Probab=96.41 E-value=0.0056 Score=50.21 Aligned_cols=61 Identities=20% Similarity=0.326 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHhhCcHHHHHHHHHHcCCcc-cccHHHHHHHHHHHHHHhcCCCCCCCchhhhHHHHH
Q psy17986 71 TRLDRMLIEYFLRKGYYSTAQKLAQASNITD-LTNIDLREWIKGIETNVDSLSPVSSGLDIKRHTWLR 137 (147)
Q Consensus 71 ~RldRlivDyLLR~Gy~~tA~~La~~~~Ied-LvDidiF~~~~~Ie~sL~~~d~~~~~~~~~~l~W~~ 137 (147)
.=++|+|.|||.-.||-++|.+|+++.||.. -.|.+-..+=..|......+++. .|++=++
T Consensus 27 ~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie------~Aie~in 88 (228)
T KOG2659|consen 27 EDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIE------EAIEKVN 88 (228)
T ss_pred hhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHH------HHHHHHH
Confidence 3467999999999999999999999999999 89999999989999999989888 7776554
No 6
>smart00668 CTLH C-terminal to LisH motif. Alpha-helical motif of unknown function.
Probab=95.57 E-value=0.015 Score=36.33 Aligned_cols=33 Identities=21% Similarity=0.081 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHhcCCCCCCCchhhhHHHHH---hhhhcCCCC
Q psy17986 108 REWIKGIETNVDSLSPVSSGLDIKRHTWLR---TSLRRNPSK 146 (147)
Q Consensus 108 F~~~~~Ie~sL~~~d~~~~~~~~~~l~W~~---~~Lkk~~s~ 146 (147)
|....+|.+++..++.. +|++||+ ..+.+..|.
T Consensus 2 ~~~~~~i~~~i~~g~~~------~a~~~~~~~~~~l~~~~~~ 37 (58)
T smart00668 2 FDERKRIRELILKGDWD------EALEWLSSLKPPLLERNSK 37 (58)
T ss_pred hHHHHHHHHHHHcCCHH------HHHHHHHHcCHHHhccCCC
Confidence 67899999999999999 9999999 556666554
No 7
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=84.57 E-value=2.3 Score=36.93 Aligned_cols=69 Identities=7% Similarity=-0.058 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHhhCcHHHHHHHHHHcCCccccc-HHHHHHHHHHHHHHhcCCCCCCCchhhhHHHHH--hhhhcCCCC
Q psy17986 72 RLDRMLIEYFLRKGYYSTAQKLAQASNITDLTN-IDLREWIKGIETNVDSLSPVSSGLDIKRHTWLR--TSLRRNPSK 146 (147)
Q Consensus 72 RldRlivDyLLR~Gy~~tA~~La~~~~IedLvD-idiF~~~~~Ie~sL~~~d~~~~~~~~~~l~W~~--~~Lkk~~s~ 146 (147)
..+-..-.++-|+|-..-+-.+..+.|++.+.+ .+.|.-.+.|.+++.+.+++ ..++|.+ .+|+|.++.
T Consensus 102 ~~~~~~~l~~~n~~dv~~~hi~~~~~g~~e~~~~~~~f~~lK~v~~gI~~k~~~------l~iE~~Qi~gyl~kgdte 173 (396)
T COG5109 102 TYLVVYYLLENNCADVVERHISETKDGKDEIIKIRDGFVKLKKVISGISEKSTF------LLIEFLQIEGYLSKGDTE 173 (396)
T ss_pred eehHHHHHHHhhHHHHHHHHHHHhhcCccchhhHHHHHHHHHHHHHhhccchhH------hHHHHHHhcCccccCCch
Confidence 345667778888998889999999999999998 78999999999999999999 9999998 888887653
No 8
>KOG4603|consensus
Probab=83.11 E-value=22 Score=28.51 Aligned_cols=95 Identities=19% Similarity=0.266 Sum_probs=57.2
Q ss_pred CCCccchhhhhhhHH---HhHHHHHHHHhhhH-------------------HHHHHHHHHHHHHHHHHhhhhcCCCCCCc
Q psy17986 2 NVSDADSYEWNGEDS---NTGKAVRTWAGESI-------------------GEELQAGHVIKRRIEHLKEHSGNVLSNTS 59 (147)
Q Consensus 2 ~~~~~~~~~~~~~~i---erl~~LKrKl~~~~-------------------~eE~~~~~~~k~Ri~hL~el~~~~~~t~~ 59 (147)
+|||++-+.+-|++. ++++.|+......- ++=.+...-.+.||..+++.-... .+
T Consensus 75 ~~~~eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~~k~g~~~v---tp 151 (201)
T KOG4603|consen 75 MVSDEELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKNIKAGTNHV---TP 151 (201)
T ss_pred CCChHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC---CH
Confidence 588888888887765 66666665433221 111222334455666665543211 11
Q ss_pred cC--------hHHHHHH-HHHHHHHHHHHHHHhhCcHHHHHHHHHHcCCc
Q psy17986 60 QS--------EASINQW-KKTRLDRMLIEYFLRKGYYSTAQKLAQASNIT 100 (147)
Q Consensus 60 ~~--------~~~~~~W-~~~RldRlivDyLLR~Gy~~tA~~La~~~~Ie 100 (147)
.+ .....+| .++|+-|=|.|-++- |+...-..|-++.|||
T Consensus 152 edk~~v~~~y~~~~~~wrk~krmf~ei~d~~~e-~~pk~ksel~eelGIE 200 (201)
T KOG4603|consen 152 EDKEQVYREYQKYCKEWRKRKRMFREIIDKLLE-GLPKKKSELYEELGIE 200 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCcchHHHHHHHhCcC
Confidence 11 1235678 566888999998875 5666778888888886
No 9
>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria. The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.
Probab=68.40 E-value=18 Score=23.75 Aligned_cols=35 Identities=20% Similarity=0.419 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHhhCcHHHHHHHHHHcCCcccc
Q psy17986 69 KKTRLDRMLIEYFLRKGYYSTAQKLAQASNITDLT 103 (147)
Q Consensus 69 ~~~RldRlivDyLLR~Gy~~tA~~La~~~~IedLv 103 (147)
.+.++=.+|.+|.-++||.-|...+|+..|+..--
T Consensus 7 rQ~~vL~~I~~~~~~~G~~Pt~rEIa~~~g~~S~~ 41 (65)
T PF01726_consen 7 RQKEVLEFIREYIEENGYPPTVREIAEALGLKSTS 41 (65)
T ss_dssp HHHHHHHHHHHHHHHHSS---HHHHHHHHTSSSHH
T ss_pred HHHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCChH
Confidence 45677789999999999999999999999998543
No 10
>PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10. RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined [].
Probab=61.89 E-value=22 Score=25.80 Aligned_cols=49 Identities=6% Similarity=0.026 Sum_probs=23.8
Q ss_pred hhCcHHHHHHHHHHcC---CcccccHHHHHHHHHHHHHHhcCCCCCCCchhhhHHHHH
Q psy17986 83 RKGYYSTAQKLAQASN---ITDLTNIDLREWIKGIETNVDSLSPVSSGLDIKRHTWLR 137 (147)
Q Consensus 83 R~Gy~~tA~~La~~~~---IedLvDidiF~~~~~Ie~sL~~~d~~~~~~~~~~l~W~~ 137 (147)
++|.+++|...+++.. .+.=.++.......+..+-++..+.. +|++|++
T Consensus 13 ~~g~i~~Ai~w~~~~~~~l~~~~~~L~f~L~~q~fiell~~~~~~------~Ai~y~r 64 (145)
T PF10607_consen 13 LNGDIDPAIEWLNENFPELLKRNSSLEFELRCQQFIELLREGDIM------EAIEYAR 64 (145)
T ss_pred HcCCHHHHHHHHHHcCHHHHhcCCchhHHHHHHHHHHHHHHHhHH------HHHHHHH
Confidence 5555555555555532 11113344444455555555555555 5555555
No 11
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=59.92 E-value=37 Score=26.49 Aligned_cols=47 Identities=19% Similarity=0.094 Sum_probs=35.6
Q ss_pred HHHHHHHH-HHHHHHHHHHhhCcHHHHHHHHHHcCCcccccHHHHHHH
Q psy17986 65 INQWKKTR-LDRMLIEYFLRKGYYSTAQKLAQASNITDLTNIDLREWI 111 (147)
Q Consensus 65 ~~~W~~~R-ldRlivDyLLR~Gy~~tA~~La~~~~IedLvDidiF~~~ 111 (147)
.+...|-. -+-.|++-||..|++-.|..+|++.+--+-+....|.++
T Consensus 82 lDMLkRL~~~~~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeA 129 (167)
T PF07035_consen 82 LDMLKRLGTAYEEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEA 129 (167)
T ss_pred HHHHHHhhhhHHHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHH
Confidence 44445555 557799999999999999999999766666666666654
No 12
>KOG2659|consensus
Probab=59.36 E-value=22 Score=29.37 Aligned_cols=65 Identities=12% Similarity=0.019 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHhhCcHHHHHHHHHHcCCccccc---HHHHHHHHHHHHHHhcCCCCCCCchhhhHHHHHhhhhc
Q psy17986 72 RLDRMLIEYFLRKGYYSTAQKLAQASNITDLTN---IDLREWIKGIETNVDSLSPVSSGLDIKRHTWLRTSLRR 142 (147)
Q Consensus 72 RldRlivDyLLR~Gy~~tA~~La~~~~IedLvD---idiF~~~~~Ie~sL~~~d~~~~~~~~~~l~W~~~~Lkk 142 (147)
--+|+.|-++...|..++|..+..+.+=+-|-+ +..+....+..+-++.+.+. .|++..+++|-.
T Consensus 65 ~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~l~F~Lq~q~lIEliR~~~~e------eal~F~q~~LA~ 132 (228)
T KOG2659|consen 65 MDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNRELFFHLQQLHLIELIREGKTE------EALEFAQTKLAP 132 (228)
T ss_pred HhHHHHHHHHHHhccHHHHHHHHHHhChHHHccchhHHHHHHHHHHHHHHHhhhHH------HHHHHHHHHccc
Confidence 346899999999999999999999987443322 33566777888888889999 999999866543
No 13
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=55.72 E-value=11 Score=34.68 Aligned_cols=20 Identities=45% Similarity=0.569 Sum_probs=17.7
Q ss_pred HHHHHHHHhhCcHHHHHHHH
Q psy17986 75 RMLIEYFLRKGYYSTAQKLA 94 (147)
Q Consensus 75 RlivDyLLR~Gy~~tA~~La 94 (147)
|-++=|+||+|+++.|..++
T Consensus 115 Wa~Iyy~LR~G~~~~A~~~~ 134 (613)
T PF04097_consen 115 WALIYYCLRCGDYDEALEVA 134 (613)
T ss_dssp HHHHHHHHTTT-HHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHH
Confidence 56888999999999999999
No 14
>PF14823 Sirohm_synth_C: Sirohaem biosynthesis protein C-terminal; PDB: 1KYQ_B.
Probab=50.43 E-value=23 Score=23.75 Aligned_cols=37 Identities=19% Similarity=0.175 Sum_probs=27.8
Q ss_pred hhhHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhc
Q psy17986 12 NGEDSNTGKAVRTWAGESIGEELQAGHVIKRRIEHLKEHSG 52 (147)
Q Consensus 12 ~~~~ierl~~LKrKl~~~~~eE~~~~~~~k~Ri~hL~el~~ 52 (147)
.|+.|++|..|+++|.+..... ...++|..-+.+..+
T Consensus 4 ~g~AIe~vG~LR~~LR~~ap~~----~~~~~RM~Wm~~vcd 40 (70)
T PF14823_consen 4 LGEAIENVGELRSRLREVAPDP----EDGKRRMRWMSQVCD 40 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHS-SC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCc----hhHHHHHHHHHHHhc
Confidence 5889999999999999866543 566778777776653
No 15
>PF01125 G10: G10 protein; InterPro: IPR001748 A Xenopus protein known as G10 [] has been found to be highly conserved in a wide range of eukaryotic species. The function of G10 is still unknown. G10 is a protein of about 17 to 18 kDa (143 to 157 residues) which is hydrophilic and whose C-terminal half is rich in cysteines and could be involved in metal-binding.; GO: 0005634 nucleus
Probab=48.46 E-value=12 Score=28.77 Aligned_cols=29 Identities=14% Similarity=0.384 Sum_probs=22.6
Q ss_pred hHHHHHHHHHH-HHHHHHHHHHhhCcHHHH
Q psy17986 62 EASINQWKKTR-LDRMLIEYFLRKGYYSTA 90 (147)
Q Consensus 62 ~~~~~~W~~~R-ldRlivDyLLR~Gy~~tA 90 (147)
.--|+..++.+ +.|=|-||||++||.+..
T Consensus 59 RYIydlyYk~k~ISkeLY~~ll~~~yaD~~ 88 (145)
T PF01125_consen 59 RYIYDLYYKRKAISKELYDWLLKEKYADAN 88 (145)
T ss_pred hHHHHHHHHhhhccHHHHHHHHHcCCcCHH
Confidence 33567777555 999999999999997653
No 16
>KOG2057|consensus
Probab=43.55 E-value=41 Score=29.72 Aligned_cols=22 Identities=18% Similarity=0.667 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhCc
Q psy17986 65 INQWKKTRLDRMLIEYFLRKGY 86 (147)
Q Consensus 65 ~~~W~~~RldRlivDyLLR~Gy 86 (147)
-..|.+.+-.-+|.+||+|+|-
T Consensus 75 K~~WRRVYKSLiLLaYLikNGS 96 (499)
T KOG2057|consen 75 KDAWRRVYKSLILLAYLIKNGS 96 (499)
T ss_pred HHHHHHHHHHHHHHHHHHhccc
Confidence 4679999999999999999994
No 17
>PHA02701 ORF020 dsRNA-binding PKR inhibitor; Provisional
Probab=43.50 E-value=18 Score=28.89 Aligned_cols=28 Identities=14% Similarity=0.298 Sum_probs=24.8
Q ss_pred HHHHHHHHHhhCcHHHHHHHHHHcCCcc
Q psy17986 74 DRMLIEYFLRKGYYSTAQKLAQASNITD 101 (147)
Q Consensus 74 dRlivDyLLR~Gy~~tA~~La~~~~Ied 101 (147)
.+.|.|||-|+|---||..++++.||+-
T Consensus 6 ~~~i~~~l~~~~~~~~a~~i~k~l~i~k 33 (183)
T PHA02701 6 ASLILTLLSSSGDKLPAKRIAKELGISK 33 (183)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHhCccH
Confidence 4789999999995499999999999984
No 18
>PF05205 COMPASS-Shg1: COMPASS (Complex proteins associated with Set1p) component shg1
Probab=42.09 E-value=1.3e+02 Score=21.52 Aligned_cols=78 Identities=14% Similarity=0.186 Sum_probs=48.1
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccChHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHcC
Q psy17986 19 GKAVRTWAGESIGEELQAGHVIKRRIEHLKEHSGNVLSNTSQSEASINQWKKTRLDRMLIEYFLRKGYYSTAQKLAQASN 98 (147)
Q Consensus 19 l~~LKrKl~~~~~eE~~~~~~~k~Ri~hL~el~~~~~~t~~~~~~~~~~W~~~RldRlivDyLLR~Gy~~tA~~La~~~~ 98 (147)
.+.++|.+-... ......+.++.|++-+-+-.-. .++.....++-.+.-+|--.+.|+|+|..+.....+
T Consensus 13 FD~lRk~~l~~~-~~~~~~~~l~~~v~~~v~~~l~-------~~~~l~~~nk~k~~alI~~~i~rs~~~~~~e~~i~~-- 82 (106)
T PF05205_consen 13 FDKLRKECLADF-DTSPAYQNLRQRVEEIVESELE-------RDPWLLSKNKGKARALIEGAIDRSGVYKGVERIIDQ-- 82 (106)
T ss_pred hHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHh-------cCcccCCcchHHHHHHHHHHHHHhhhhhhHHHHHHH--
Confidence 345666655544 3457788888888877653321 111223345667777888899999998885554333
Q ss_pred CcccccHHHHH
Q psy17986 99 ITDLTNIDLRE 109 (147)
Q Consensus 99 IedLvDidiF~ 109 (147)
+||-.+-.
T Consensus 83 ---~vd~~l~~ 90 (106)
T PF05205_consen 83 ---VVDPKLNE 90 (106)
T ss_pred ---HHHHHHHH
Confidence 66655433
No 19
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=41.35 E-value=1.3e+02 Score=25.55 Aligned_cols=68 Identities=13% Similarity=0.198 Sum_probs=45.7
Q ss_pred hhhHHHhHHHHHHHHhhhHHHHHH---HHHHHHHHHHHHhhhhcCCCCCCccChHHHHHH------HHHHHHHHHHHHHH
Q psy17986 12 NGEDSNTGKAVRTWAGESIGEELQ---AGHVIKRRIEHLKEHSGNVLSNTSQSEASINQW------KKTRLDRMLIEYFL 82 (147)
Q Consensus 12 ~~~~ierl~~LKrKl~~~~~eE~~---~~~~~k~Ri~hL~el~~~~~~t~~~~~~~~~~W------~~~RldRlivDyLL 82 (147)
+.++-+++..|+...++...+-.. .+..|..|+++-..+-+.- .+....| ...++..+++|-||
T Consensus 244 l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L-------~~E~~RW~~~~~~l~~~~~~l~GD~ll 316 (344)
T PF12777_consen 244 LAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGL-------SGEKERWSEQIEELEEQLKNLVGDSLL 316 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------HHHHHCCHCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhh-------cchhhhHHHHHHHHHHHhcccHHHHHH
Confidence 345556677777777665544332 3688899999988876552 2233445 46788899999999
Q ss_pred hhCc
Q psy17986 83 RKGY 86 (147)
Q Consensus 83 R~Gy 86 (147)
-.++
T Consensus 317 aaa~ 320 (344)
T PF12777_consen 317 AAAF 320 (344)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
No 20
>PF09388 SpoOE-like: Spo0E like sporulation regulatory protein; InterPro: IPR018540 Spore formation is an extreme response to starvation and can also be a component of disease transmission. Sporulation is controlled by an expanded two-component system where starvation signals result in sensor kinase activation and phosphorylation of the master sporulation response regulator Spo0A. Phosphatases such as Spo0E dephosphorylate Spo0A thereby inhibiting sporulation. This is a family of Spo0E-like phosphatases. The structure of a Bacillus anthracis member of this family has revealed an anti-parallel alpha-helical structure []. ; PDB: 2BZB_B 2C0S_A.
Probab=38.49 E-value=89 Score=18.72 Aligned_cols=37 Identities=19% Similarity=0.406 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHhhhhcCCCCCCccChHHHHHHHHHHHHHHHHHHH
Q psy17986 37 GHVIKRRIEHLKEHSGNVLSNTSQSEASINQWKKTRLDRMLIEYF 81 (147)
Q Consensus 37 ~~~~k~Ri~hL~el~~~~~~t~~~~~~~~~~W~~~RldRlivDyL 81 (147)
+..++..+..+....+. .++..-. ..+.+|.+|+.|+
T Consensus 6 Ie~~R~~L~~~~~~~~l-------~~~~vl~-~Sq~LD~lI~~y~ 42 (45)
T PF09388_consen 6 IEELRQELNELAEKKGL-------TDPEVLE-LSQELDKLINEYQ 42 (45)
T ss_dssp HHHHHHHHHHHHHHCCT-------TCHHHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCC-------CCHHHHH-HHHHHHHHHHHHh
Confidence 34455555555544432 2333333 5779999999996
No 21
>PRK01631 hypothetical protein; Provisional
Probab=38.06 E-value=55 Score=22.57 Aligned_cols=40 Identities=3% Similarity=-0.301 Sum_probs=27.9
Q ss_pred hhhHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhh
Q psy17986 12 NGEDSNTGKAVRTWAGESIGEELQAGHVIKRRIEHLKEHS 51 (147)
Q Consensus 12 ~~~~ierl~~LKrKl~~~~~eE~~~~~~~k~Ri~hL~el~ 51 (147)
|.++|.|+..|=+|..+---.+.+...+-.-|=+||+...
T Consensus 1 m~~ii~RINeLakK~K~~gLT~eE~~Eq~~LR~eYl~~fR 40 (76)
T PRK01631 1 MKNILFRINELSKKEKATGLTVDEKQEQQMLRQNYTQTFR 40 (76)
T ss_pred ChhHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHH
Confidence 6789999999988766655445555555556777777653
No 22
>KOG4304|consensus
Probab=36.69 E-value=1.2e+02 Score=25.06 Aligned_cols=83 Identities=10% Similarity=0.125 Sum_probs=47.6
Q ss_pred hhhhhhhHHHh---------HHHHHHHHhhhHHHH---------HHHHHHHHHHHHHHhhhhcCCCCCCccChHHHHHHH
Q psy17986 8 SYEWNGEDSNT---------GKAVRTWAGESIGEE---------LQAGHVIKRRIEHLKEHSGNVLSNTSQSEASINQWK 69 (147)
Q Consensus 8 ~~~~~~~~ier---------l~~LKrKl~~~~~eE---------~~~~~~~k~Ri~hL~el~~~~~~t~~~~~~~~~~W~ 69 (147)
.++-++-+||| |..||+=+.+....+ .++++.. ++||+.+..... ......
T Consensus 31 ~rk~~Kpl~EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILElt---V~hL~~l~~~~~--~~~~~~------ 99 (250)
T KOG4304|consen 31 YRKVRKPLLEKKRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELT---VNHLRQLQRSQQ--AAAQAA------ 99 (250)
T ss_pred HhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHH---HHHHHHHhcccc--cccccc------
Confidence 34556667766 667777665555443 2233333 778887765410 000110
Q ss_pred HHHHHHHHHHHHHhhCcHHHHHHHHHHcCCcccccH
Q psy17986 70 KTRLDRMLIEYFLRKGYYSTAQKLAQASNITDLTNI 105 (147)
Q Consensus 70 ~~RldRlivDyLLR~Gy~~tA~~La~~~~IedLvDi 105 (147)
.+-..+|+ .|.||.++|...+.-..+-.=+|.
T Consensus 100 ---~~~~~~d~-f~~Gf~ec~~EVsr~ls~~~~~~~ 131 (250)
T KOG4304|consen 100 ---PAALPVDS-FRAGFRECAAEVSRYLSICPGMDA 131 (250)
T ss_pred ---cccccchh-hhccHHHHHHHHHHHHhhCCCCCh
Confidence 34445554 489999999888887655555554
No 23
>cd03571 ENTH_epsin ENTH domain, Epsin family; The epsin (Eps15 interactor) N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the trans-Golgi network, which suggests that E/ANTH domains are univ
Probab=35.35 E-value=77 Score=23.36 Aligned_cols=46 Identities=15% Similarity=0.356 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCCCCccChHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHH
Q psy17986 34 LQAGHVIKRRIEHLKEHSGNVLSNTSQSEASINQWKKTRLDRMLIEYFLRKGYYSTAQKLAQA 96 (147)
Q Consensus 34 ~~~~~~~k~Ri~hL~el~~~~~~t~~~~~~~~~~W~~~RldRlivDyLLR~Gy~~tA~~La~~ 96 (147)
...++.+.+|+.-- . ..|....=.-.|+|||+++|--.-+..+-..
T Consensus 36 ~~Im~~l~kRL~~~-----~------------k~WR~vyKaL~lleyLl~nGse~vv~~~r~~ 81 (123)
T cd03571 36 QEIMSMLWKRLNDK-----G------------KNWRHVYKALTLLEYLLKNGSERVVDDAREN 81 (123)
T ss_pred HHHHHHHHHHHHhc-----c------------ccHHHHHHHHHHHHHHHHhCCHHHHHHHHHh
Confidence 45677777776543 1 3599988899999999999976555555433
No 24
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=34.68 E-value=72 Score=16.55 Aligned_cols=22 Identities=23% Similarity=0.259 Sum_probs=18.4
Q ss_pred HHHHHHHHhhCcHHHHHHHHHH
Q psy17986 75 RMLIEYFLRKGYYSTAQKLAQA 96 (147)
Q Consensus 75 RlivDyLLR~Gy~~tA~~La~~ 96 (147)
-.++..+++.|.++.|..+.++
T Consensus 5 ~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHHhC
Confidence 4678899999999999988753
No 25
>PF14698 ASL_C2: Argininosuccinate lyase C-terminal; PDB: 1XWO_A 2E9F_A 1TJW_C 1TJU_A 1DCN_B 1K7W_B 1HY1_C 1TJV_B 1AUW_A 1U15_B ....
Probab=34.63 E-value=61 Score=21.41 Aligned_cols=27 Identities=30% Similarity=0.538 Sum_probs=18.3
Q ss_pred HHHHHHhhCc--------HHHHHHHHHHcCCccccc
Q psy17986 77 LIEYFLRKGY--------YSTAQKLAQASNITDLTN 104 (147)
Q Consensus 77 ivDyLLR~Gy--------~~tA~~La~~~~IedLvD 104 (147)
|+|||.|.|- ...+...|.+.|+. |-+
T Consensus 7 lAD~LVr~GipFR~AH~iVg~~V~~a~~~~~~-l~~ 41 (70)
T PF14698_consen 7 LADYLVRKGIPFREAHHIVGRLVRLAEEEGKP-LSE 41 (70)
T ss_dssp HHHHHHHTTS-HHHHHHHHHHHHHHHHHTTS--GGG
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCC-hhh
Confidence 7899999995 34456666677766 554
No 26
>KOG4594|consensus
Probab=34.55 E-value=48 Score=28.63 Aligned_cols=32 Identities=22% Similarity=0.315 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHhhCcHHHHHHHHHHcC
Q psy17986 67 QWKKTRLDRMLIEYFLRKGYYSTAQKLAQASN 98 (147)
Q Consensus 67 ~W~~~RldRlivDyLLR~Gy~~tA~~La~~~~ 98 (147)
.-.+.||.-+|-||||--|-..+|+.|+.+..
T Consensus 14 ~qArekLa~YvYEYLlhvgaqksaqtflseir 45 (354)
T KOG4594|consen 14 SQAREKLALYVYEYLLHVGAQKSAQTFLSEIR 45 (354)
T ss_pred hhHHHHHHHHHHHHHHHhhhhhhhhhhHHHHH
Confidence 34678999999999999999999999988743
No 27
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=33.55 E-value=1.1e+02 Score=22.05 Aligned_cols=28 Identities=14% Similarity=0.125 Sum_probs=15.6
Q ss_pred HhHHHHHHHHhhhHHHHHHHHHHHHHHH
Q psy17986 17 NTGKAVRTWAGESIGEELQAGHVIKRRI 44 (147)
Q Consensus 17 erl~~LKrKl~~~~~eE~~~~~~~k~Ri 44 (147)
++|..||.|+.+-+....+.++.+...|
T Consensus 72 EqL~~Lk~kl~~e~~~~~k~i~~le~~I 99 (100)
T PF04568_consen 72 EQLKKLKEKLKEEIEHHRKEIDELEKHI 99 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5677777777665554444444444433
No 28
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=32.96 E-value=2.4e+02 Score=23.87 Aligned_cols=90 Identities=23% Similarity=0.156 Sum_probs=63.7
Q ss_pred ccchhhhhhhHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccChHHHHHHHHHHHHHHHHHHHHhh
Q psy17986 5 DADSYEWNGEDSNTGKAVRTWAGESIGEELQAGHVIKRRIEHLKEHSGNVLSNTSQSEASINQWKKTRLDRMLIEYFLRK 84 (147)
Q Consensus 5 ~~~~~~~~~~~ierl~~LKrKl~~~~~eE~~~~~~~k~Ri~hL~el~~~~~~t~~~~~~~~~~W~~~RldRlivDyLLR~ 84 (147)
|....+|..+.=..++.++.+..+-..|+.-...+|.+=+.|++++-.. ++- ....-+.+..-.+++
T Consensus 134 d~~f~~WV~~~R~~l~e~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~-------dp~------~E~~~~~lm~~y~~~ 200 (280)
T COG3629 134 DDRFDEWVLEQRRALEELFIKALTKLAEALIACGRADAVIEHLERLIEL-------DPY------DEPAYLRLMEAYLVN 200 (280)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc-------Ccc------chHHHHHHHHHHHHc
Confidence 4557899999999999999998888888888888888888899888765 222 222334456666777
Q ss_pred CcHHHHH--------HHHHHcCCcccccHHH
Q psy17986 85 GYYSTAQ--------KLAQASNITDLTNIDL 107 (147)
Q Consensus 85 Gy~~tA~--------~La~~~~IedLvDidi 107 (147)
|...+|. .+++..||+.-.-++.
T Consensus 201 g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 201 GRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred CCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 7644443 3666677776655443
No 29
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=32.85 E-value=86 Score=29.09 Aligned_cols=38 Identities=24% Similarity=0.164 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHhhCcHHHHHHHHHHcCCcccccHHHHHHHHHH
Q psy17986 72 RLDRMLIEYFLRKGYYSTAQKLAQASNITDLTNIDLREWIKGI 114 (147)
Q Consensus 72 RldRlivDyLLR~Gy~~tA~~La~~~~IedLvDidiF~~~~~I 114 (147)
++-|=.-.||||.|.|+.|-.||-.- =|.|+|...+-+
T Consensus 495 ~~aRRfFhhLLR~~rfekAFlLAvdi-----~~~DLFmdlh~~ 532 (545)
T PF11768_consen 495 DLARRFFHHLLRYQRFEKAFLLAVDI-----GDRDLFMDLHYL 532 (545)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhc-----cchHHHHHHHHH
Confidence 55566899999999999999999764 466777776654
No 30
>PF12854 PPR_1: PPR repeat
Probab=32.68 E-value=72 Score=17.71 Aligned_cols=23 Identities=22% Similarity=0.251 Sum_probs=19.7
Q ss_pred HHHHHHHHHhhCcHHHHHHHHHH
Q psy17986 74 DRMLIEYFLRKGYYSTAQKLAQA 96 (147)
Q Consensus 74 dRlivDyLLR~Gy~~tA~~La~~ 96 (147)
--.|++-+.+.|..+.|..|.++
T Consensus 10 y~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 10 YNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHh
Confidence 34689999999999999998775
No 31
>KOG2056|consensus
Probab=31.69 E-value=1.4e+02 Score=26.13 Aligned_cols=40 Identities=25% Similarity=0.445 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcCCCCCCccChHHHHHHHHHHHHHHHHHHHHhhCcH
Q psy17986 31 GEELQAGHVIKRRIEHLKEHSGNVLSNTSQSEASINQWKKTRLDRMLIEYFLRKGYY 87 (147)
Q Consensus 31 ~eE~~~~~~~k~Ri~hL~el~~~~~~t~~~~~~~~~~W~~~RldRlivDyLLR~Gy~ 87 (147)
.+-.+++..+-+| |+.- . ..|....=.-.|+||||.+|--
T Consensus 53 ~e~~eIm~vi~kR---l~d~--g------------knWR~VyKaLtlleyLl~~GSE 92 (336)
T KOG2056|consen 53 VEYQEIMDVLWKR---LNDS--G------------KNWRHVYKALTLLEYLLKNGSE 92 (336)
T ss_pred HHHHHHHHHHHHH---Hhhc--c------------chHHHHHHHHHHHHHHHhcCcH
Confidence 4446678888888 2221 1 3599988889999999999954
No 32
>PF13875 DUF4202: Domain of unknown function (DUF4202)
Probab=31.10 E-value=2.8e+02 Score=22.21 Aligned_cols=69 Identities=16% Similarity=0.252 Sum_probs=46.8
Q ss_pred HHHHHHHHHHhhhhcCCCCCCccChHHHHHHHH---HHHHHHHHHHHHhhCc----HHHHHHHHHHcCCcccccHHH
Q psy17986 38 HVIKRRIEHLKEHSGNVLSNTSQSEASINQWKK---TRLDRMLIEYFLRKGY----YSTAQKLAQASNITDLTNIDL 107 (147)
Q Consensus 38 ~~~k~Ri~hL~el~~~~~~t~~~~~~~~~~W~~---~RldRlivDyLLR~Gy----~~tA~~La~~~~IedLvDidi 107 (147)
-++.+|.+|+..-..+-.+ -+.....|..|.. ++-.....+-|.-+|| .+-+..|....||..=-+..+
T Consensus 51 LqlAaR~QHi~RW~~PR~~-yP~~r~GYl~WR~~l~~~hA~~~~~im~~~Gy~~~~i~rV~~lv~K~~lk~d~e~Q~ 126 (185)
T PF13875_consen 51 LQLAARAQHIERWEIPRSS-YPEGRAGYLQWRRALKKRHAAIAAEIMREAGYDEEEIDRVAALVRKEGLKRDPETQA 126 (185)
T ss_pred HHHHHHHHHHHHhcCchhc-CCCCchhHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhccCCCCchHHH
Confidence 3588999999976543110 2446789999954 4666678899999999 444666777778775444433
No 33
>PF13838 Clathrin_H_link: Clathrin-H-link; PDB: 2XZG_A 3GD1_I 1BPO_C 1C9I_B 1C9L_A.
Probab=27.46 E-value=1.7e+02 Score=19.53 Aligned_cols=40 Identities=20% Similarity=0.227 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHhhCcHHHHHHHHHHcCCcccccHHHHHHHH
Q psy17986 68 WKKTRLDRMLIEYFLRKGYYSTAQKLAQASNITDLTNIDLREWIK 112 (147)
Q Consensus 68 W~~~RldRlivDyLLR~Gy~~tA~~La~~~~IedLvDidiF~~~~ 112 (147)
.+..+++. |+..|.|..|.++|..+-=.-|-..++...-+
T Consensus 8 l~~~~F~~-----l~~~g~y~eAA~~AA~sP~giLRt~~Ti~rFk 47 (66)
T PF13838_consen 8 LYVQQFNE-----LFSQGQYEEAAKVAANSPRGILRTPETINRFK 47 (66)
T ss_dssp HHHHHHHH-----HHHTT-HHHHHHHHHHSGGGTT-SHHHHHHHH
T ss_pred HHHHHHHH-----HHHcCCHHHHHHHHHhCccchhcCHHHHHHHH
Confidence 34555554 67899999999999998555566665544444
No 34
>PF13041 PPR_2: PPR repeat family
Probab=25.39 E-value=1e+02 Score=18.03 Aligned_cols=22 Identities=27% Similarity=0.380 Sum_probs=19.4
Q ss_pred HHHHHHHhhCcHHHHHHHHHHc
Q psy17986 76 MLIEYFLRKGYYSTAQKLAQAS 97 (147)
Q Consensus 76 livDyLLR~Gy~~tA~~La~~~ 97 (147)
.|++.+.+.|.++.|.++-++.
T Consensus 8 ~li~~~~~~~~~~~a~~l~~~M 29 (50)
T PF13041_consen 8 TLISGYCKAGKFEEALKLFKEM 29 (50)
T ss_pred HHHHHHHHCcCHHHHHHHHHHH
Confidence 5788999999999999998874
No 35
>PF05979 DUF896: Bacterial protein of unknown function (DUF896); InterPro: IPR009242 This family consists of several short, hypothetical bacterial proteins of unknown function. They may be involved in the bacterial SOS response [].; PDB: 2HEP_A 3BHP_C 2JVD_A.
Probab=25.08 E-value=2.2e+02 Score=19.00 Aligned_cols=40 Identities=18% Similarity=0.075 Sum_probs=27.8
Q ss_pred hhHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhc
Q psy17986 13 GEDSNTGKAVRTWAGESIGEELQAGHVIKRRIEHLKEHSG 52 (147)
Q Consensus 13 ~~~ierl~~LKrKl~~~~~eE~~~~~~~k~Ri~hL~el~~ 52 (147)
+++|.|+..|=+|....--.+.+...+-.-|-+||+....
T Consensus 1 Ke~i~RINeLa~K~K~~gLT~eE~~Eq~~LR~eYl~~fR~ 40 (65)
T PF05979_consen 1 KEKIDRINELAKKSKEEGLTEEEKAEQAELRQEYLQNFRG 40 (65)
T ss_dssp -HHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHTTHH
T ss_pred CcHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3689999999888777666666666677778888887643
No 36
>COG1777 Predicted transcriptional regulators [Transcription]
Probab=24.88 E-value=3.9e+02 Score=21.94 Aligned_cols=70 Identities=17% Similarity=0.218 Sum_probs=45.7
Q ss_pred hhhhhHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccChHHHHHHHHHHHHHHHHHHHHhhCcHHH
Q psy17986 10 EWNGEDSNTGKAVRTWAGESIGEELQAGHVIKRRIEHLKEHSGNVLSNTSQSEASINQWKKTRLDRMLIEYFLRKGYYST 89 (147)
Q Consensus 10 ~~~~~~ierl~~LKrKl~~~~~eE~~~~~~~k~Ri~hL~el~~~~~~t~~~~~~~~~~W~~~RldRlivDyLLR~Gy~~t 89 (147)
.-..+++.|+..+.+..++......+.......=++++++.... =-...+.+.+..||+-+|
T Consensus 118 ~~~~~l~srl~~~~~~~e~l~~~~~~L~~~~~el~~rik~~ied--------------~~~~~~~~~vl~~l~~n~---- 179 (217)
T COG1777 118 EGISELISRLLEINREIEELSRAQTELQKQLNELMDRIKEEIED--------------KDGDMTERIVLEYLLKNG---- 179 (217)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------------ccchHHHHHHHHHHHhhh----
Confidence 34578888999988888887776666555544445555543322 122356788999999999
Q ss_pred HHHHHHHc
Q psy17986 90 AQKLAQAS 97 (147)
Q Consensus 90 A~~La~~~ 97 (147)
|..+++.+
T Consensus 180 ~~~v~E~~ 187 (217)
T COG1777 180 AADVEETS 187 (217)
T ss_pred hhHHHHHH
Confidence 55555543
No 37
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=24.75 E-value=1e+02 Score=22.05 Aligned_cols=38 Identities=24% Similarity=0.480 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHhhCcHHHHHHHHHH-cCCccccc
Q psy17986 67 QWKKTRLDRMLIEYFLRKGYYSTAQKLAQA-SNITDLTN 104 (147)
Q Consensus 67 ~W~~~RldRlivDyLLR~Gy~~tA~~La~~-~~IedLvD 104 (147)
.|....=--.|++||+++|...-...+-.. .-|+.|.+
T Consensus 55 ~wr~~~KaL~ll~yLl~nG~~~~~~~~~~~~~~I~~l~~ 93 (125)
T PF01417_consen 55 NWRHVYKALTLLEYLLKNGSERFVDELRDHIDIIRELQD 93 (125)
T ss_dssp GHHHHHHHHHHHHHHHHHS-HHHHHHHHHTHHHHHGGGG
T ss_pred chhHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHhhcce
Confidence 588887788899999999987666655333 24444444
No 38
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=24.53 E-value=1.1e+02 Score=16.42 Aligned_cols=21 Identities=24% Similarity=0.362 Sum_probs=15.6
Q ss_pred HHHHHHHhhCcHHHHHHHHHH
Q psy17986 76 MLIEYFLRKGYYSTAQKLAQA 96 (147)
Q Consensus 76 livDyLLR~Gy~~tA~~La~~ 96 (147)
-|+.++...|.++.|..+.++
T Consensus 7 ~la~~~~~~g~~~~A~~~~~~ 27 (42)
T PF13374_consen 7 NLANAYRAQGRYEEALELLEE 27 (42)
T ss_dssp HHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHhhhhcchhhHHHHH
Confidence 367777888999999887765
No 39
>KOG3647|consensus
Probab=24.27 E-value=4.7e+02 Score=22.59 Aligned_cols=65 Identities=15% Similarity=0.151 Sum_probs=39.4
Q ss_pred hhHHHhHHHHHHHHhhhHHHHHHH----------HHHHHHHHHHHhhhhcCCCCCCccChHHHHHHHHHHHHHHHHHHHH
Q psy17986 13 GEDSNTGKAVRTWAGESIGEELQA----------GHVIKRRIEHLKEHSGNVLSNTSQSEASINQWKKTRLDRMLIEYFL 82 (147)
Q Consensus 13 ~~~ierl~~LKrKl~~~~~eE~~~----------~~~~k~Ri~hL~el~~~~~~t~~~~~~~~~~W~~~RldRlivDyLL 82 (147)
..+..+++..+.+|+....+|..+ +.+.++|++-|+...+.+ -..|+. ...+|..+---|++
T Consensus 115 q~i~~~~q~~~~~Lnnvasdea~L~~Kierrk~ElEr~rkRle~LqsiRP~~-------MdEyE~-~EeeLqkly~~Y~l 186 (338)
T KOG3647|consen 115 QAIQVRLQSSRAQLNNVASDEAALGSKIERRKAELERTRKRLEALQSIRPAH-------MDEYED-CEEELQKLYQRYFL 186 (338)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH-------HHHHHH-HHHHHHHHHHHHHH
Confidence 355678899999998888777554 555666666666543321 112222 34466666666777
Q ss_pred hhC
Q psy17986 83 RKG 85 (147)
Q Consensus 83 R~G 85 (147)
|.-
T Consensus 187 ~f~ 189 (338)
T KOG3647|consen 187 RFH 189 (338)
T ss_pred HHh
Confidence 655
No 40
>PF11026 DUF2721: Protein of unknown function (DUF2721); InterPro: IPR021279 This family is conserved in bacteria. The function is not known.
Probab=24.08 E-value=1.3e+02 Score=22.11 Aligned_cols=37 Identities=11% Similarity=0.161 Sum_probs=19.9
Q ss_pred hhHHHhHHHHHHHHhhhHHHH----HHHHHHHHHHHHHHhh
Q psy17986 13 GEDSNTGKAVRTWAGESIGEE----LQAGHVIKRRIEHLKE 49 (147)
Q Consensus 13 ~~~ierl~~LKrKl~~~~~eE----~~~~~~~k~Ri~hL~e 49 (147)
+-++.|.+.|.++.++..+++ ...+..+++|+..++.
T Consensus 24 ~ri~dR~R~L~~~~~~~~~~~~~~~~~el~~L~rR~~li~~ 64 (130)
T PF11026_consen 24 ARIVDRIRQLHDELRDAPDEEERRLRRELRILRRRARLIRR 64 (130)
T ss_pred HHHHHHHHHHHHHhccCCcchhhhHHHHHHHHHHHHHHHHH
Confidence 345566666666655544333 3445555555555553
No 41
>COG1322 Predicted nuclease of restriction endonuclease-like fold, RmuC family [General function prediction only]
Probab=22.70 E-value=2.4e+02 Score=25.51 Aligned_cols=69 Identities=19% Similarity=0.278 Sum_probs=42.0
Q ss_pred HhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhcC----CCCC---CccChHHHHHHHHHHHHHHHHHHHHhhCc
Q psy17986 17 NTGKAVRTWAGESIGEELQAGHVIKRRIEHLKEHSGN----VLSN---TSQSEASINQWKKTRLDRMLIEYFLRKGY 86 (147)
Q Consensus 17 erl~~LKrKl~~~~~eE~~~~~~~k~Ri~hL~el~~~----~~~t---~~~~~~~~~~W~~~RldRlivDyLLR~Gy 86 (147)
+.+.++++.++....++.+......++|.-+...... ..+. -+ .+-..-.|-..+|.|+|-+++++.||
T Consensus 139 ~~~e~f~e~l~~~~~~s~~~~~~~~~~i~~~lg~~~~la~e~~~Lt~~Lk-~~ktrG~wGEv~Le~ILe~~gl~~~~ 214 (448)
T COG1322 139 EVLEKFREQLEQRIHESAEERSTLLEEIDRLLGEIQQLAQEAGNLTAALK-GNKTRGNWGEVQLERILEDSGLREGY 214 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCccccHHHHHHHHHHHHhCchhcc
Confidence 3455666667666666665555555555555443210 0000 00 02234569999999999999999998
No 42
>PF05120 GvpG: Gas vesicle protein G ; InterPro: IPR007804 Gas vesicles are intracellular, protein-coated, and hollow organelles found in cyanobacteria and halophilic archaea. They are permeable to ambient gases by diffusion and provide buoyancy, enabling cells to move upwards in water to access oxygen and/or light. Proteins containing this family are involved in the formation of gas vesicles [].
Probab=22.65 E-value=2.7e+02 Score=19.17 Aligned_cols=49 Identities=24% Similarity=0.287 Sum_probs=35.9
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccChHHHHHHHHHHHHHH
Q psy17986 24 TWAGESIGEELQAGHVIKRRIEHLKEHSGNVLSNTSQSEASINQWKKTRLDRM 76 (147)
Q Consensus 24 rKl~~~~~eE~~~~~~~k~Ri~hL~el~~~~~~t~~~~~~~~~~W~~~RldRl 76 (147)
+++.+..+.|.-....+++++..|+..... ..++...|..=...-++|+
T Consensus 17 e~I~~~Ae~E~~Dp~~i~~~L~~L~~~~e~----GEIseeEf~~~E~eLL~rL 65 (79)
T PF05120_consen 17 EQIQEQAERELYDPAAIRRELAELQEALEA----GEISEEEFERREDELLDRL 65 (79)
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHHHHHHHc----CCCCHHHHHHHHHHHHHHH
Confidence 445556666777788999999999988766 4556777777666667776
No 43
>KOG2168|consensus
Probab=22.21 E-value=79 Score=30.81 Aligned_cols=23 Identities=26% Similarity=0.428 Sum_probs=20.2
Q ss_pred HHHHHHHhhCcHHHHHHHHHHcC
Q psy17986 76 MLIEYFLRKGYYSTAQKLAQASN 98 (147)
Q Consensus 76 livDyLLR~Gy~~tA~~La~~~~ 98 (147)
-+|.|++|+|..+.|..+..+.+
T Consensus 330 ~~vyy~lR~G~lk~A~~~l~e~~ 352 (835)
T KOG2168|consen 330 PLVYYLLRCGDLKAASQFLNENK 352 (835)
T ss_pred HHHHHHHhhhhHHHHHHHHHHhh
Confidence 48999999999999999988853
No 44
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=21.35 E-value=1.3e+02 Score=15.19 Aligned_cols=21 Identities=24% Similarity=0.286 Sum_probs=17.1
Q ss_pred HHHHHHHhhCcHHHHHHHHHH
Q psy17986 76 MLIEYFLRKGYYSTAQKLAQA 96 (147)
Q Consensus 76 livDyLLR~Gy~~tA~~La~~ 96 (147)
.++..+.+.|.++.|..+-++
T Consensus 5 ~li~~~~~~~~~~~a~~~~~~ 25 (35)
T TIGR00756 5 TLIDGLCKAGRVEEALELFKE 25 (35)
T ss_pred HHHHHHHHCCCHHHHHHHHHH
Confidence 477788999999988887765
No 45
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=20.93 E-value=1.5e+02 Score=16.90 Aligned_cols=22 Identities=23% Similarity=0.255 Sum_probs=18.7
Q ss_pred HHHHHHHHhhCcHHHHHHHHHH
Q psy17986 75 RMLIEYFLRKGYYSTAQKLAQA 96 (147)
Q Consensus 75 RlivDyLLR~Gy~~tA~~La~~ 96 (147)
..++..+.+.|.++.|..+.++
T Consensus 5 ~~la~~~~~~G~~~~A~~~~~~ 26 (44)
T PF13428_consen 5 LALARAYRRLGQPDEAERLLRR 26 (44)
T ss_pred HHHHHHHHHcCCHHHHHHHHHH
Confidence 4578899999999999988776
No 46
>PF02646 RmuC: RmuC family; InterPro: IPR003798 This protein contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures []. Proteins in this family are predicted to contain a central endonuclease-like fold domain, surrounded by coiled coils, consistent with a direct role in DNA cleavage [, ].
Probab=20.88 E-value=3.5e+02 Score=22.70 Aligned_cols=83 Identities=17% Similarity=0.210 Sum_probs=57.9
Q ss_pred hhhhHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhh---cC-CCCCC-----ccChHHHHHHHHHHHHHHHHHHH
Q psy17986 11 WNGEDSNTGKAVRTWAGESIGEELQAGHVIKRRIEHLKEHS---GN-VLSNT-----SQSEASINQWKKTRLDRMLIEYF 81 (147)
Q Consensus 11 ~~~~~ierl~~LKrKl~~~~~eE~~~~~~~k~Ri~hL~el~---~~-~~~t~-----~~~~~~~~~W~~~RldRlivDyL 81 (147)
..+.+-++|..+++++++......+....+...|..|.+.. .. ..++. -.++-..-.|-...|.++|=+..
T Consensus 7 l~~pl~e~l~~~~~~l~~~~~~~~~~~~~L~~~l~~l~~~~~~~~~l~~~~~~L~~aL~~~k~rG~wGE~~Le~iLe~~g 86 (304)
T PF02646_consen 7 LLKPLKEQLEKFEKRLEESFEQRSEEFGSLKEQLKQLSEANGEIQQLSQEASNLTSALKNSKTRGNWGEMQLERILEDSG 86 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHcC
Confidence 45667788999999999999988888889999997777654 11 00000 00222345799999999999998
Q ss_pred HhhC-cHHHHHHH
Q psy17986 82 LRKG-YYSTAQKL 93 (147)
Q Consensus 82 LR~G-y~~tA~~L 93 (147)
++.| .|.+=..+
T Consensus 87 l~~~~~y~~Q~~~ 99 (304)
T PF02646_consen 87 LPEGCDYETQVSL 99 (304)
T ss_pred CCcccchhhcccc
Confidence 8887 55544433
No 47
>PF13606 Ank_3: Ankyrin repeat
Probab=20.43 E-value=64 Score=17.52 Aligned_cols=10 Identities=30% Similarity=0.883 Sum_probs=8.3
Q ss_pred HHHHHHHhhC
Q psy17986 76 MLIEYFLRKG 85 (147)
Q Consensus 76 livDyLLR~G 85 (147)
=+|+||+++|
T Consensus 16 e~v~~Ll~~g 25 (30)
T PF13606_consen 16 EIVKYLLEHG 25 (30)
T ss_pred HHHHHHHHcC
Confidence 3789999888
No 48
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=20.20 E-value=2.7e+02 Score=18.27 Aligned_cols=31 Identities=23% Similarity=0.218 Sum_probs=24.9
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHhhh
Q psy17986 20 KAVRTWAGESIGEELQAGHVIKRRIEHLKEH 50 (147)
Q Consensus 20 ~~LKrKl~~~~~eE~~~~~~~k~Ri~hL~el 50 (147)
..+++.++....+=...+..|+.+|+-|+..
T Consensus 41 ~~~~~el~~l~~~i~~~~~~~~~~lk~l~~~ 71 (103)
T PF00804_consen 41 SELKRELDELTDEIKQLFQKIKKRLKQLSKD 71 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777777777788889999999999876
No 49
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=20.04 E-value=3.5e+02 Score=19.50 Aligned_cols=38 Identities=16% Similarity=0.236 Sum_probs=27.9
Q ss_pred hhhHHHhHHHHHHHHhhhHHHHHHH---HHHHHHHHHHHhh
Q psy17986 12 NGEDSNTGKAVRTWAGESIGEELQA---GHVIKRRIEHLKE 49 (147)
Q Consensus 12 ~~~~ierl~~LKrKl~~~~~eE~~~---~~~~k~Ri~hL~e 49 (147)
++.+.+.|..||..+.+...|-..+ -+.++.|+..+..
T Consensus 17 l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 17 LGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5667788888898888888765444 5667777777765
Done!