Query psy17986
Match_columns 147
No_of_seqs 108 out of 161
Neff 5.8
Searched_HMMs 29240
Date Fri Aug 16 19:23:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17986.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17986hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1uuj_A Platelet-activating fac 81.5 3 0.0001 28.5 5.1 33 69-101 9-41 (88)
2 2xtc_A F-box-like/WD repeat-co 79.1 3 0.0001 28.6 4.5 32 70-101 5-36 (90)
3 2qx5_A Nucleoporin NIC96; mRNA 67.8 3.3 0.00011 37.4 3.1 24 75-98 156-179 (661)
4 3fse_A Two-domain protein cont 56.6 31 0.0011 28.7 7.0 86 20-110 239-328 (365)
5 2gmg_A Hypothetical protein PF 45.7 8.7 0.0003 27.0 1.6 38 85-122 22-60 (105)
6 3swy_A Cyclic nucleotide-gated 40.2 58 0.002 19.4 4.9 33 17-49 12-44 (46)
7 1deq_A Fibrinogen (alpha chain 35.4 2.1E+02 0.0071 24.3 9.5 38 72-116 152-189 (390)
8 3swf_A CGMP-gated cation chann 34.1 84 0.0029 20.6 4.9 34 17-50 14-47 (74)
9 2xz2_A CSTF-50, isoform B; RNA 33.9 79 0.0027 20.3 4.6 33 69-101 15-47 (66)
10 1vyh_C Platelet-activating fac 32.6 9.3 0.00032 30.5 0.0 31 70-100 8-38 (410)
11 4e29_A Chimeric WZZB chain len 32.5 1.8E+02 0.0061 22.9 7.6 75 5-102 96-170 (248)
12 1eyh_A Epsin; superhelix of he 32.3 58 0.002 23.6 4.3 30 66-95 55-84 (144)
13 3vmx_A Voltage-gated hydrogen 30.5 57 0.0019 19.7 3.3 35 35-81 11-45 (48)
14 2aze_B Transcription factor E2 30.1 86 0.0029 21.6 4.7 36 14-49 3-41 (106)
15 2eap_A Lymphocyte cytosolic pr 29.9 56 0.0019 22.2 3.6 34 63-101 17-50 (90)
16 1oyi_A Double-stranded RNA-bin 29.1 15 0.00052 24.5 0.6 25 75-101 20-44 (82)
17 1inz_A EPS15-interacting porte 28.1 60 0.002 23.6 3.8 27 67-93 74-100 (148)
18 3onk_A Epsin-3, ENT3; helix, p 27.8 69 0.0024 23.4 4.1 26 67-92 63-88 (150)
19 1ji5_A DLP-1; dodecamer, four- 25.8 1.6E+02 0.0053 19.9 5.9 88 18-108 31-123 (142)
20 3twe_A Alpha4H; unknown functi 25.1 56 0.0019 17.1 2.2 19 9-27 7-25 (27)
21 3f1i_S STAM-1, signal transduc 24.3 1.3E+02 0.0044 19.8 4.5 28 12-39 39-67 (77)
22 1kd8_B GABH BLL, GCN4 acid bas 23.6 1.1E+02 0.0037 17.3 3.8 17 17-33 1-17 (36)
23 2bni_A General control protein 22.9 98 0.0033 17.3 3.1 19 17-35 1-19 (34)
24 1xgw_A Epsin 4; ENTH, enthopro 22.9 93 0.0032 23.3 4.1 27 67-93 86-112 (176)
25 2dbs_A Hypothetical protein TT 22.8 46 0.0016 22.3 2.0 17 70-86 8-24 (90)
26 1xmk_A Double-stranded RNA-spe 22.8 28 0.00097 22.8 1.0 28 73-101 12-39 (79)
27 3c3f_A Alpha/beta peptide with 22.3 1.1E+02 0.0039 17.1 3.8 19 17-35 1-19 (34)
28 3azd_A Short alpha-tropomyosin 21.9 39 0.0013 19.1 1.3 28 17-48 4-31 (37)
29 2c41_A DPS family DNA-binding 21.4 2.1E+02 0.0072 19.9 5.9 90 19-110 41-134 (158)
30 2oxj_A Hybrid alpha/beta pepti 20.4 1.3E+02 0.0043 16.9 3.8 19 17-35 1-19 (34)
31 2d5k_A DPS, DPS family protein 20.4 2.2E+02 0.0077 19.8 5.7 90 19-110 38-131 (156)
32 1urq_A M-tomosyn isoform; tran 20.1 1.4E+02 0.0049 18.5 3.9 35 18-52 5-39 (63)
33 2jvd_A UPF0291 protein YNZC; s 20.0 1.4E+02 0.0048 18.3 3.7 42 12-53 3-44 (54)
No 1
>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1
Probab=81.47 E-value=3 Score=28.52 Aligned_cols=33 Identities=15% Similarity=0.419 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHhhCcHHHHHHHHHHcCCcc
Q psy17986 69 KKTRLDRMLIEYFLRKGYYSTAQKLAQASNITD 101 (147)
Q Consensus 69 ~~~RldRlivDyLLR~Gy~~tA~~La~~~~Ied 101 (147)
-+.-|++-|++||.-+||.+++..|.++.++..
T Consensus 9 Q~eEL~kaI~~YL~~~~~~~~~~alr~e~~~~~ 41 (88)
T 1uuj_A 9 QRDELNRAIADYLRSNGYEEAYSVFKKEAELDM 41 (88)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHHhcCCC
Confidence 345689999999999999999999999987763
No 2
>2xtc_A F-box-like/WD repeat-containing protein TBL1X; transcription; 2.22A {Homo sapiens} PDB: 2xte_A 2xtd_A
Probab=79.05 E-value=3 Score=28.62 Aligned_cols=32 Identities=16% Similarity=0.373 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHhhCcHHHHHHHHHHcCCcc
Q psy17986 70 KTRLDRMLIEYFLRKGYYSTAQKLAQASNITD 101 (147)
Q Consensus 70 ~~RldRlivDyLLR~Gy~~tA~~La~~~~Ied 101 (147)
...++.+|--||..+||..||-.|..+++|..
T Consensus 5 sdevN~LI~RYLqEsGf~hsAf~f~~Es~i~~ 36 (90)
T 2xtc_A 5 SDEVNFLVYRYLQESGFSHSAFTFGIESHISQ 36 (90)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHTTGGG
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHhcCCc
Confidence 35688999999999999999999999988764
No 3
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=67.83 E-value=3.3 Score=37.45 Aligned_cols=24 Identities=29% Similarity=0.403 Sum_probs=21.4
Q ss_pred HHHHHHHHhhCcHHHHHHHHHHcC
Q psy17986 75 RMLIEYFLRKGYYSTAQKLAQASN 98 (147)
Q Consensus 75 RlivDyLLR~Gy~~tA~~La~~~~ 98 (147)
|-++=|+||||+++.|..++++.+
T Consensus 156 Wa~IyY~LR~G~~~~A~e~~~~~~ 179 (661)
T 2qx5_A 156 WALIFYLLRAGLIKEALQVLVENK 179 (661)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHTG
T ss_pred HHHHHHHHhcCCHHHHHHHHHHhh
Confidence 567889999999999999999864
No 4
>3fse_A Two-domain protein containing DJ-1/THIJ/PFPI-like ferritin-like domains; structural genomics; HET: MSE CSX; 1.90A {Anabaena variabilis atcc 29413}
Probab=56.60 E-value=31 Score=28.67 Aligned_cols=86 Identities=14% Similarity=0.025 Sum_probs=49.5
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccChHHHHHHHHHHHHHHHHHHHHhhCc--HHHHHHHHHHc
Q psy17986 20 KAVRTWAGESIGEELQAGHVIKRRIEHLKEHSGNVLSNTSQSEASINQWKKTRLDRMLIEYFLRKGY--YSTAQKLAQAS 97 (147)
Q Consensus 20 ~~LKrKl~~~~~eE~~~~~~~k~Ri~hL~el~~~~~~t~~~~~~~~~~W~~~RldRlivDyLLR~Gy--~~tA~~La~~~ 97 (147)
..||.-++++..++.+.++++..||+.|.+..+. +..-...+..| +.++..-=-=++||+.| ..++...+.+.
T Consensus 239 ~~~~~~~~~i~~~~~~h~~~l~~~~~~~g~~~~~----~~~~~~~~a~~-~~~~~~~~~~~~l~~al~~~~~gi~~~~~l 313 (365)
T 3fse_A 239 VEAKALFQEMITNKQRHIEYLETYLTRLGEKPSL----SANIANQYAKV-KTALTGSDDIYQIRSALGDIQTGIGDIGNL 313 (365)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCGGG----SCC----------------CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCc----CcchhHHHHHH-HHHhcCCChHHHHHHHhcchhhhHHHHHHH
Confidence 5678889999999999999999999999887654 22233344444 22222211113566655 44666666663
Q ss_pred --CCcccccHHHHHH
Q psy17986 98 --NITDLTNIDLREW 110 (147)
Q Consensus 98 --~IedLvDidiF~~ 110 (147)
+..|-+-.+||.+
T Consensus 314 ~~~~~dp~~~~i~~~ 328 (365)
T 3fse_A 314 CAMYTDPIATAIFKE 328 (365)
T ss_dssp TTTCSCHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHH
Confidence 5555555666654
No 5
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=45.69 E-value=8.7 Score=27.03 Aligned_cols=38 Identities=13% Similarity=0.008 Sum_probs=33.0
Q ss_pred CcHHHHHHHHHHcCCcccccHH-HHHHHHHHHHHHhcCC
Q psy17986 85 GYYSTAQKLAQASNITDLTNID-LREWIKGIETNVDSLS 122 (147)
Q Consensus 85 Gy~~tA~~La~~~~IedLvDid-iF~~~~~Ie~sL~~~d 122 (147)
+..-||..|++..||+++-.-+ ||.....|.++|.+.+
T Consensus 22 ~~plta~ei~~~l~i~~~~~ke~Vy~hLeHIaksl~r~g 60 (105)
T 2gmg_A 22 EGDYSPSELARILDMRGKGSKKVILEDLKVISKIAKREG 60 (105)
T ss_dssp TSCBCTTHHHHSSCCCSSCCHHHHHHHHHHHHHHHTTTT
T ss_pred cCCCCHHHHHHHhCCCCCChHHHHHHHHHHHHHHHhcCC
Confidence 5567899999999999887777 9999999999998643
No 6
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=40.17 E-value=58 Score=19.40 Aligned_cols=33 Identities=15% Similarity=0.193 Sum_probs=26.0
Q ss_pred HhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhh
Q psy17986 17 NTGKAVRTWAGESIGEELQAGHVIKRRIEHLKE 49 (147)
Q Consensus 17 erl~~LKrKl~~~~~eE~~~~~~~k~Ri~hL~e 49 (147)
..|+.|.-|+.....+-......++.||..|..
T Consensus 12 ~~ld~LqTr~ArLlae~~ssq~KlKqRit~lE~ 44 (46)
T 3swy_A 12 SSLDTLQTRFARLLAEYNATQMKMKQRLSQLES 44 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 346677778888888888888999999988753
No 7
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=35.41 E-value=2.1e+02 Score=24.34 Aligned_cols=38 Identities=13% Similarity=0.084 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHhhCcHHHHHHHHHHcCCcccccHHHHHHHHHHHH
Q psy17986 72 RLDRMLIEYFLRKGYYSTAQKLAQASNITDLTNIDLREWIKGIET 116 (147)
Q Consensus 72 RldRlivDyLLR~Gy~~tA~~La~~~~IedLvDidiF~~~~~Ie~ 116 (147)
||+--| ||..|..--..+..|+-+ ||++-|++..+=..
T Consensus 152 RLE~~I-d~c~~~C~~sC~~~l~~~------vD~e~ye~qqKQL~ 189 (390)
T 1deq_A 152 RLEVDI-DIKIRSCKGSCSRALEHK------VDLEDYKNQQKQLE 189 (390)
T ss_pred HHHHHH-HHHhcccccccchhhhhh------ccHHHHHHHHHHHH
Confidence 444444 777777766666666555 45555555444333
No 8
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=34.15 E-value=84 Score=20.61 Aligned_cols=34 Identities=12% Similarity=0.182 Sum_probs=28.6
Q ss_pred HhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhh
Q psy17986 17 NTGKAVRTWAGESIGEELQAGHVIKRRIEHLKEH 50 (147)
Q Consensus 17 erl~~LKrKl~~~~~eE~~~~~~~k~Ri~hL~el 50 (147)
..|+.|.-|+.....+-......+|.||..|...
T Consensus 14 ~sld~LQTrfARLLaEy~ssQ~KLKqRit~LE~~ 47 (74)
T 3swf_A 14 SSVDLLQTRFARILAEYESMQQKLKQRLTKVEKF 47 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467788888889999899999999999988753
No 9
>2xz2_A CSTF-50, isoform B; RNA-binding protein, 3' END mRNA maturation, transcription; 1.40A {Drosophila melanogaster}
Probab=33.86 E-value=79 Score=20.31 Aligned_cols=33 Identities=18% Similarity=0.261 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHhhCcHHHHHHHHHHcCCcc
Q psy17986 69 KKTRLDRMLIEYFLRKGYYSTAQKLAQASNITD 101 (147)
Q Consensus 69 ~~~RldRlivDyLLR~Gy~~tA~~La~~~~Ied 101 (147)
.|..+.|+|+-.|+=-||..-|..|+..-+...
T Consensus 15 ~Re~LYrLIISQL~YDG~~~iA~~L~~~v~~~~ 47 (66)
T 2xz2_A 15 NREILYRLMISQLMYDGLEKFAMELSMLVKADQ 47 (66)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHhhcCCCC
Confidence 678999999999999999999999999977665
No 10
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=32.61 E-value=9.3 Score=30.53 Aligned_cols=31 Identities=16% Similarity=0.462 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhCcHHHHHHHHHHcCCc
Q psy17986 70 KTRLDRMLIEYFLRKGYYSTAQKLAQASNIT 100 (147)
Q Consensus 70 ~~RldRlivDyLLR~Gy~~tA~~La~~~~Ie 100 (147)
+..+.|.|++||..+||.+++..|.++.++.
T Consensus 8 ~~~~~~~i~~~l~~~~~~~~~~~~~~e~~~~ 38 (410)
T 1vyh_C 8 RDELNRAIADYLRSNGYEEAYSVFKKEAELD 38 (410)
T ss_dssp -------------------------------
T ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHhCCC
Confidence 4568999999999999999999999988654
No 11
>4e29_A Chimeric WZZB chain length determinant protein; regulation of LPS O-antigen chain length, inner membran membrane protein; 1.60A {Shigella flexneri} PDB: 4e2c_A 4e2h_A 3b8p_A
Probab=32.53 E-value=1.8e+02 Score=22.93 Aligned_cols=75 Identities=15% Similarity=0.065 Sum_probs=42.7
Q ss_pred ccchhhhhhhHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccChHHHHHHHHHHHHHHHHHHHHhh
Q psy17986 5 DADSYEWNGEDSNTGKAVRTWAGESIGEELQAGHVIKRRIEHLKEHSGNVLSNTSQSEASINQWKKTRLDRMLIEYFLRK 84 (147)
Q Consensus 5 ~~~~~~~~~~~ierl~~LKrKl~~~~~eE~~~~~~~k~Ri~hL~el~~~~~~t~~~~~~~~~~W~~~RldRlivDyLLR~ 84 (147)
..++.+|+.+.|.-+..--++ + .-..+...+..|+..|++.... .......=+..|+.|+
T Consensus 96 a~~Aq~lL~~YI~fv~~~v~~--e---l~~~l~~~i~~r~~~l~~ql~~-------~~~~ak~qr~~rI~rL-------- 155 (248)
T 4e29_A 96 AEGAQMKLAQYIQQVDDKVNQ--E---LERDLKDNIALGRKNLQDSLRT-------QEVVAQEQKDLRIRQI-------- 155 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--H---HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHHHHHHHHH--H---HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH--------
Confidence 346788888888765542111 1 1123344556666666654322 1112222245566555
Q ss_pred CcHHHHHHHHHHcCCccc
Q psy17986 85 GYYSTAQKLAQASNITDL 102 (147)
Q Consensus 85 Gy~~tA~~La~~~~IedL 102 (147)
+.|.+.|+..||+..
T Consensus 156 ---~~AL~IA~aaGI~kP 170 (248)
T 4e29_A 156 ---EEALRYADEAKITQP 170 (248)
T ss_dssp ---HHHHHHHHHHTCCSC
T ss_pred ---HHHHHHHHHcCCCCC
Confidence 789999999998875
No 12
>1eyh_A Epsin; superhelix of helices, cell cycle; 1.56A {Rattus norvegicus} SCOP: a.118.9.1 PDB: 1h0a_A* 1edu_A
Probab=32.34 E-value=58 Score=23.56 Aligned_cols=30 Identities=20% Similarity=0.500 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHhhCcHHHHHHHHH
Q psy17986 66 NQWKKTRLDRMLIEYFLRKGYYSTAQKLAQ 95 (147)
Q Consensus 66 ~~W~~~RldRlivDyLLR~Gy~~tA~~La~ 95 (147)
..|....=.-.++|||+++|--.-+..+..
T Consensus 55 k~Wr~vyKaL~lleyLl~nGse~vv~~~~~ 84 (144)
T 1eyh_A 55 KNWRHVYKAMTLMEYLIKTGSERVSQQCKE 84 (144)
T ss_dssp GGHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred cchHHHhHHHHHHHHHHHhCCHHHHHHHHH
Confidence 359998889999999999997665554443
No 13
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=30.53 E-value=57 Score=19.73 Aligned_cols=35 Identities=20% Similarity=0.286 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCCCccChHHHHHHHHHHHHHHHHHHH
Q psy17986 35 QAGHVIKRRIEHLKEHSGNVLSNTSQSEASINQWKKTRLDRMLIEYF 81 (147)
Q Consensus 35 ~~~~~~k~Ri~hL~el~~~~~~t~~~~~~~~~~W~~~RldRlivDyL 81 (147)
+....+..|+.||+...+. ..-.-.|++++|-+|-
T Consensus 11 e~n~~L~~kv~~Le~~c~~------------~eQEieRL~~LLkqHg 45 (48)
T 3vmx_A 11 QINIQLATKIQHLEFSCSE------------KEQEIERLNKLLKQNG 45 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHccH------------HHHHHHHHHHHHHHcC
Confidence 3455778899999876543 1124468999988764
No 14
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=30.09 E-value=86 Score=21.56 Aligned_cols=36 Identities=11% Similarity=0.005 Sum_probs=25.0
Q ss_pred hHHHhHHHHHHHHhhhHHHHHHH---HHHHHHHHHHHhh
Q psy17986 14 EDSNTGKAVRTWAGESIGEELQA---GHVIKRRIEHLKE 49 (147)
Q Consensus 14 ~~ierl~~LKrKl~~~~~eE~~~---~~~~k~Ri~hL~e 49 (147)
++..|++.||.-+.+...+|..+ +..|...+..+.+
T Consensus 3 ~~~~~~~~Lk~El~~L~~~E~~LD~~i~~~~~~l~~lte 41 (106)
T 2aze_B 3 HMGGRLEGLTQDLRQLQESEQQLDHLMNICTTQLRLLSE 41 (106)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45678999999999999888655 5555566666654
No 15
>2eap_A Lymphocyte cytosolic protein 2; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.93 E-value=56 Score=22.25 Aligned_cols=34 Identities=21% Similarity=0.480 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHcCCcc
Q psy17986 63 ASINQWKKTRLDRMLIEYFLRKGYYSTAQKLAQASNITD 101 (147)
Q Consensus 63 ~~~~~W~~~RldRlivDyLLR~Gy~~tA~~La~~~~Ied 101 (147)
.....|.-.. ++|||-+.||-+ +.+|++..+|..
T Consensus 17 seV~~Wsp~~----VadWLkk~g~~~-cd~lv~Kh~IDG 50 (90)
T 2eap_A 17 SEVLGWDPDS----LADYFKKLNYKD-CEKAVKKYHIDG 50 (90)
T ss_dssp HHHTTCCTTT----HHHHHHHTTCHH-HHHHHHHTTCCH
T ss_pred ccccccCHHH----HHHHHHHcCCch-HHHHHHHhccCc
Confidence 3445564433 689999999998 899998877765
No 16
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=29.07 E-value=15 Score=24.49 Aligned_cols=25 Identities=24% Similarity=0.238 Sum_probs=21.2
Q ss_pred HHHHHHHHhhCcHHHHHHHHHHcCCcc
Q psy17986 75 RMLIEYFLRKGYYSTAQKLAQASNITD 101 (147)
Q Consensus 75 RlivDyLLR~Gy~~tA~~La~~~~Ied 101 (147)
+-|.++|.++| -||..||++.||..
T Consensus 20 ~~IL~lL~~~g--~sa~eLAk~LgiSk 44 (82)
T 1oyi_A 20 CEAIKTIGIEG--ATAAQLTRQLNMEK 44 (82)
T ss_dssp HHHHHHHSSST--EEHHHHHHHSSSCH
T ss_pred HHHHHHHHHcC--CCHHHHHHHHCcCH
Confidence 44668999999 89999999999765
No 17
>1inz_A EPS15-interacting portein(epsin); alpha-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.118.9.1
Probab=28.15 E-value=60 Score=23.63 Aligned_cols=27 Identities=22% Similarity=0.529 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHhhCcHHHHHHH
Q psy17986 67 QWKKTRLDRMLIEYFLRKGYYSTAQKL 93 (147)
Q Consensus 67 ~W~~~RldRlivDyLLR~Gy~~tA~~L 93 (147)
.|....=.-.++|||+++|--.-+..+
T Consensus 74 ~WR~vyKaL~lleyLl~nGse~vv~~~ 100 (148)
T 1inz_A 74 NWRHVYKAMTLMEYLIKTGSERVSQQC 100 (148)
T ss_dssp CTHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred chhHhhHHHHHHHHHHHhCCHHHHHHH
Confidence 498888889999999999976544433
No 18
>3onk_A Epsin-3, ENT3; helix, protein transport; 2.09A {Saccharomyces cerevisiae} PDB: 3onl_A
Probab=27.84 E-value=69 Score=23.41 Aligned_cols=26 Identities=15% Similarity=0.484 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHhhCcHHHHHH
Q psy17986 67 QWKKTRLDRMLIEYFLRKGYYSTAQK 92 (147)
Q Consensus 67 ~W~~~RldRlivDyLLR~Gy~~tA~~ 92 (147)
.|....=.-.++|||+++|--.-+..
T Consensus 63 ~WR~vyKaL~lLeyLl~nGse~vv~~ 88 (150)
T 3onk_A 63 EWRQIYKALQLLDYLIKHGSERFIDD 88 (150)
T ss_dssp THHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 49988889999999999997654444
No 19
>1ji5_A DLP-1; dodecamer, four-helix bundle, metal transport; 2.50A {Bacillus anthracis} SCOP: a.25.1.1
Probab=25.79 E-value=1.6e+02 Score=19.90 Aligned_cols=88 Identities=17% Similarity=0.082 Sum_probs=52.4
Q ss_pred hHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhcCCCCC----CccChHHHHHH-HHHHHHHHHHHHHHhhCcHHHHHH
Q psy17986 18 TGKAVRTWAGESIGEELQAGHVIKRRIEHLKEHSGNVLSN----TSQSEASINQW-KKTRLDRMLIEYFLRKGYYSTAQK 92 (147)
Q Consensus 18 rl~~LKrKl~~~~~eE~~~~~~~k~Ri~hL~el~~~~~~t----~~~~~~~~~~W-~~~RldRlivDyLLR~Gy~~tA~~ 92 (147)
...++..++.+...+|....+.+..||..|...+.....+ ....++... | ...-+...+.++-.-...+..+..
T Consensus 31 ~f~~l~~~~~~~~~ee~~had~laeri~~lGg~p~~~~~~~~~~s~i~~~~~~-~~~~e~l~~~l~~e~~~~~~~~~~~~ 109 (142)
T 1ji5_A 31 QFFTLHEKFEELYTESATHIDEIAERILAIGGKPVATMKEYLEISSIQEAAYG-ETAEGMVEAIMKDYEMMLVELKKGME 109 (142)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHCCCCCCCTT-CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHhhCCCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677889999999999999999999999998765441000 001100000 1 223455555555555555666777
Q ss_pred HHHHcCCcccccHHHH
Q psy17986 93 LAQASNITDLTNIDLR 108 (147)
Q Consensus 93 La~~~~IedLvDidiF 108 (147)
+|.+. .|.+-.+++
T Consensus 110 ~a~~~--~D~~t~~~l 123 (142)
T 1ji5_A 110 IAQNS--DDEMTSDLL 123 (142)
T ss_dssp HHHHT--TCHHHHHHH
T ss_pred HHHHC--CCHHHHHHH
Confidence 77653 344434444
No 20
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=25.15 E-value=56 Score=17.06 Aligned_cols=19 Identities=11% Similarity=-0.009 Sum_probs=14.2
Q ss_pred hhhhhhHHHhHHHHHHHHh
Q psy17986 9 YEWNGEDSNTGKAVRTWAG 27 (147)
Q Consensus 9 ~~~~~~~ierl~~LKrKl~ 27 (147)
|+=+.++-+|++.|++|+.
T Consensus 7 ykeledlqerlrklrkklr 25 (27)
T 3twe_A 7 YKELEDLQERLRKLRKKLR 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 5556677788888888874
No 21
>3f1i_S STAM-1, signal transducing adapter molecule 1; HGS, ESCRT, ubiquitin, MVB, endosome, membrane, metal- phosphoprotein, protein transport, transport; 2.30A {Homo sapiens}
Probab=24.30 E-value=1.3e+02 Score=19.80 Aligned_cols=28 Identities=7% Similarity=-0.096 Sum_probs=18.6
Q ss_pred hhhHH-HhHHHHHHHHhhhHHHHHHHHHH
Q psy17986 12 NGEDS-NTGKAVRTWAGESIGEELQAGHV 39 (147)
Q Consensus 12 ~~~~i-erl~~LKrKl~~~~~eE~~~~~~ 39 (147)
||.+| .+|..+.||-.+..+.-.+.++.
T Consensus 39 MgplId~kLE~iDrkh~~Lteln~~~lea 67 (77)
T 3f1i_S 39 MGPLIDEKLEDIDRKHSELSELNVKVMEA 67 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777 77888887766666655444444
No 22
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=23.60 E-value=1.1e+02 Score=17.34 Aligned_cols=17 Identities=12% Similarity=-0.025 Sum_probs=12.9
Q ss_pred HhHHHHHHHHhhhHHHH
Q psy17986 17 NTGKAVRTWAGESIGEE 33 (147)
Q Consensus 17 erl~~LKrKl~~~~~eE 33 (147)
+||..|+.|.++...+-
T Consensus 1 eRMnQLE~KVEeLl~~~ 17 (36)
T 1kd8_B 1 XKVKQLKAKVEELKSKL 17 (36)
T ss_dssp -CHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHh
Confidence 57888999988887653
No 23
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=22.94 E-value=98 Score=17.34 Aligned_cols=19 Identities=11% Similarity=0.032 Sum_probs=13.4
Q ss_pred HhHHHHHHHHhhhHHHHHH
Q psy17986 17 NTGKAVRTWAGESIGEELQ 35 (147)
Q Consensus 17 erl~~LKrKl~~~~~eE~~ 35 (147)
+||..|+.|+++...+-..
T Consensus 1 eRMnQLEdKvEeLl~~~~~ 19 (34)
T 2bni_A 1 XRMKQIEDKLEEILSKGHH 19 (34)
T ss_dssp --CHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHccHH
Confidence 5788999999998876443
No 24
>1xgw_A Epsin 4; ENTH, enthoprotin, clathrin-associated, endocytosis; 1.90A {Homo sapiens} PDB: 2qy7_A 2v8s_E
Probab=22.92 E-value=93 Score=23.35 Aligned_cols=27 Identities=19% Similarity=0.534 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHhhCcHHHHHHH
Q psy17986 67 QWKKTRLDRMLIEYFLRKGYYSTAQKL 93 (147)
Q Consensus 67 ~W~~~RldRlivDyLLR~Gy~~tA~~L 93 (147)
.|....=.-.|+|||+++|--.-+..+
T Consensus 86 ~WR~vyKaL~LLeYLl~nGse~vv~~~ 112 (176)
T 1xgw_A 86 NWRRVYKSLLLLAYLIRNGSERVVTSA 112 (176)
T ss_dssp CHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 588888888999999999975444433
No 25
>2dbs_A Hypothetical protein TTHC002; extremely thermophili bacteria, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} SCOP: d.374.1.1
Probab=22.84 E-value=46 Score=22.30 Aligned_cols=17 Identities=29% Similarity=0.595 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHhhCc
Q psy17986 70 KTRLDRMLIEYFLRKGY 86 (147)
Q Consensus 70 ~~RldRlivDyLLR~Gy 86 (147)
-.++|-++++||||.|.
T Consensus 8 laeL~g~l~e~LLe~gL 24 (90)
T 2dbs_A 8 LAELDGVLMQYLLEADL 24 (90)
T ss_dssp HHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHhH
Confidence 35889999999999995
No 26
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=22.80 E-value=28 Score=22.77 Aligned_cols=28 Identities=21% Similarity=0.382 Sum_probs=22.9
Q ss_pred HHHHHHHHHHhhCcHHHHHHHHHHcCCcc
Q psy17986 73 LDRMLIEYFLRKGYYSTAQKLAQASNITD 101 (147)
Q Consensus 73 ldRlivDyLLR~Gy~~tA~~La~~~~Ied 101 (147)
+..-|.+||.++|- -||..||+..||..
T Consensus 12 ~~~~IL~~Lk~~g~-~ta~eiA~~Lgit~ 39 (79)
T 1xmk_A 12 IKEKICDYLFNVSD-SSALNLAKNIGLTK 39 (79)
T ss_dssp HHHHHHHHHHHTCC-EEHHHHHHHHCGGG
T ss_pred HHHHHHHHHHHcCC-cCHHHHHHHcCCCc
Confidence 34556799999994 57999999999875
No 27
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=22.29 E-value=1.1e+02 Score=17.05 Aligned_cols=19 Identities=0% Similarity=-0.167 Sum_probs=14.4
Q ss_pred HhHHHHHHHHhhhHHHHHH
Q psy17986 17 NTGKAVRTWAGESIGEELQ 35 (147)
Q Consensus 17 erl~~LKrKl~~~~~eE~~ 35 (147)
+||..|+.|+++...+-..
T Consensus 1 eRMnQLEdKVEeLl~~~~~ 19 (34)
T 3c3f_A 1 XRMXQIEXKLEXILSXLYH 19 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHhhhhH
Confidence 5889999999998876433
No 28
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=21.93 E-value=39 Score=19.08 Aligned_cols=28 Identities=18% Similarity=0.158 Sum_probs=15.2
Q ss_pred HhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHh
Q psy17986 17 NTGKAVRTWAGESIGEELQAGHVIKRRIEHLK 48 (147)
Q Consensus 17 erl~~LKrKl~~~~~eE~~~~~~~k~Ri~hL~ 48 (147)
+-++++|+|+.....+ .+....|+..++
T Consensus 4 ~~i~avKkKiq~lq~q----~d~aee~~~~~~ 31 (37)
T 3azd_A 4 SSLEAVRRKIRSLQEQ----NYHLENEVARLK 31 (37)
T ss_dssp --CHHHHHHHHHHHHH----TTTTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 4467788887776654 333344444444
No 29
>2c41_A DPS family DNA-binding stress response protein; iron-binding/oxidation protein, DPS (DNA-binding proteins from starved cells); HET: PG4 PGE; 1.81A {Thermosynechococcus elongatus}
Probab=21.41 E-value=2.1e+02 Score=19.86 Aligned_cols=90 Identities=12% Similarity=0.013 Sum_probs=56.3
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhcCCCCC----CccChHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHH
Q psy17986 19 GKAVRTWAGESIGEELQAGHVIKRRIEHLKEHSGNVLSN----TSQSEASINQWKKTRLDRMLIEYFLRKGYYSTAQKLA 94 (147)
Q Consensus 19 l~~LKrKl~~~~~eE~~~~~~~k~Ri~hL~el~~~~~~t----~~~~~~~~~~W~~~RldRlivDyLLR~Gy~~tA~~La 94 (147)
..+|-.++++..++|....+.+..||-.|...+.....+ ....++....=...-+...+.++-.-...+..+..+|
T Consensus 41 f~~lh~~~~~~~~ee~~had~iaErI~~lGg~p~~~~~~~~~~s~i~~~~~~~~~~e~l~~~l~~e~~~~~~~~~~i~~a 120 (158)
T 2c41_A 41 FRDLHLLFEEQGSEVFAMIDELAERSLMLDGQPVADPADYLKVATVTPSSGQLTVKQMIEEAIANHELIITEMHQDAEIA 120 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSGGGHHHHCCSCCCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577889999999999999999999999998776541100 0001110000023345666666666666677777777
Q ss_pred HHcCCcccccHHHHHH
Q psy17986 95 QASNITDLTNIDLREW 110 (147)
Q Consensus 95 ~~~~IedLvDidiF~~ 110 (147)
.+. .|.+-.++|..
T Consensus 121 ~~~--~D~~T~~ll~~ 134 (158)
T 2c41_A 121 TEA--GDIGTADLYTR 134 (158)
T ss_dssp HHT--TCHHHHHHHHH
T ss_pred HHC--CCHHHHHHHHH
Confidence 763 45555555544
No 30
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=20.43 E-value=1.3e+02 Score=16.87 Aligned_cols=19 Identities=5% Similarity=-0.069 Sum_probs=14.5
Q ss_pred HhHHHHHHHHhhhHHHHHH
Q psy17986 17 NTGKAVRTWAGESIGEELQ 35 (147)
Q Consensus 17 erl~~LKrKl~~~~~eE~~ 35 (147)
+||..|+.|.++...+-..
T Consensus 1 eRMnQLE~kVEeLl~~n~~ 19 (34)
T 2oxj_A 1 XRMXQLEXKVXELLXKNXH 19 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHhhhh
Confidence 5889999999998876443
No 31
>2d5k_A DPS, DPS family protein; four helix bundle, metal binding protein; 1.85A {Staphylococcus aureus subsp}
Probab=20.39 E-value=2.2e+02 Score=19.77 Aligned_cols=90 Identities=13% Similarity=0.008 Sum_probs=53.5
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhcCCCCC----CccChHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHH
Q psy17986 19 GKAVRTWAGESIGEELQAGHVIKRRIEHLKEHSGNVLSN----TSQSEASINQWKKTRLDRMLIEYFLRKGYYSTAQKLA 94 (147)
Q Consensus 19 l~~LKrKl~~~~~eE~~~~~~~k~Ri~hL~el~~~~~~t----~~~~~~~~~~W~~~RldRlivDyLLR~Gy~~tA~~La 94 (147)
..++-.++++..++|....+.+..||..|...+...... ....++....=...-+...+.++-.-...+..+..+|
T Consensus 38 f~~lh~~~~~~~~ee~~had~iaERI~~lGg~p~~~~~~~~~~s~i~~~~~~~~~~e~l~~~l~~e~~~~~~~~~~i~~a 117 (156)
T 2d5k_A 38 FFSLHVKFEELYNEASQYVDELAERILAVGGNPVGTLTECLEQSIVKEAAKGYSAEQMVEELSQDFTNISKQLENAIEIA 117 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSHHHHHHHCSSCCCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577889999999999999999999999998765541000 0000000000022345555666555555666677777
Q ss_pred HHcCCcccccHHHHHH
Q psy17986 95 QASNITDLTNIDLREW 110 (147)
Q Consensus 95 ~~~~IedLvDidiF~~ 110 (147)
.+. .|.+-.++|..
T Consensus 118 ~~~--~D~~T~~ll~~ 131 (156)
T 2d5k_A 118 GNA--GDDVSEDMFIG 131 (156)
T ss_dssp HHH--TCHHHHHHHHH
T ss_pred HHC--CCHHHHHHHHH
Confidence 653 34444444433
No 32
>1urq_A M-tomosyn isoform; transport protein, tomosyn-snare complex, exocytosis, four helical bundle, coiled coil; 2.0A {Rattus norvegicus} SCOP: h.1.15.1
Probab=20.12 E-value=1.4e+02 Score=18.52 Aligned_cols=35 Identities=20% Similarity=0.187 Sum_probs=29.4
Q ss_pred hHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhc
Q psy17986 18 TGKAVRTWAGESIGEELQAGHVIKRRIEHLKEHSG 52 (147)
Q Consensus 18 rl~~LKrKl~~~~~eE~~~~~~~k~Ri~hL~el~~ 52 (147)
+++.++.++.+....-....+.+-.|-+.|..+.+
T Consensus 5 ~i~~v~~qv~ev~~iM~~ni~kvlERGekL~~L~d 39 (63)
T 1urq_A 5 GIEGVKGAASGVVGELARARLALDERGQKLSDLEE 39 (63)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788889999999889999999999999987753
No 33
>2jvd_A UPF0291 protein YNZC; solution structure, construct optimization, cytoplasm, structural genomics, unknown function, PSI-2; NMR {Bacillus subtilis}
Probab=20.02 E-value=1.4e+02 Score=18.34 Aligned_cols=42 Identities=17% Similarity=0.054 Sum_probs=29.3
Q ss_pred hhhHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhcC
Q psy17986 12 NGEDSNTGKAVRTWAGESIGEELQAGHVIKRRIEHLKEHSGN 53 (147)
Q Consensus 12 ~~~~ierl~~LKrKl~~~~~eE~~~~~~~k~Ri~hL~el~~~ 53 (147)
+.+.|.|+..|=+|-...--.+.+...+-+-|=+||+.....
T Consensus 3 ~~~~i~RINeLakK~K~~gLT~eEk~EQ~~LR~eYl~~fR~~ 44 (54)
T 2jvd_A 3 SNAKIARINELAAKAKAGVITEEEKAEQQKLRQEYLKGFRSS 44 (54)
T ss_dssp CHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHTTCCCT
T ss_pred cHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 356799999997776665545555555666688899876544
Done!