RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy17986
         (147 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 42.3 bits (99), Expect = 2e-05
 Identities = 21/123 (17%), Positives = 42/123 (34%), Gaps = 43/123 (34%)

Query: 34  LQAGHVIKRRIEHLKEHSGNVLSNTSQSEASINQWKKTRLDRMLI--------EYF--LR 83
           + A  + KR  +  K+ +  +     +  A +          + I        +YF  LR
Sbjct: 127 ITARIMAKRPFD--KKSNSALFRAVGEGNAQL----------VAIFGGQGNTDDYFEELR 174

Query: 84  KGY--Y---------STAQKLAQASNITDLTN------IDLREWIKGIET--NVDSL--S 122
             Y  Y          +A+ L++    T          +++ EW++      + D L   
Sbjct: 175 DLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSI 234

Query: 123 PVS 125
           P+S
Sbjct: 235 PIS 237



 Score = 28.9 bits (64), Expect = 0.68
 Identities = 13/68 (19%), Positives = 27/68 (39%), Gaps = 8/68 (11%)

Query: 77  LIEYFLRKGYYSTAQKLAQASNITDLTNIDLRE----WIKG--IETNVDSLSPVSSGLDI 130
           L+  FL  GY S+  + ++      + N+ L E    +++G  I      L   +    +
Sbjct: 60  LVGKFL--GYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLV 117

Query: 131 KRHTWLRT 138
           K    ++ 
Sbjct: 118 KTKELIKN 125


>2qez_A Ethanolamine ammonia-lyase heavy chain; ethanol ammonia lyase large
           subunit (EUTB), structural genomics; HET: MSE; 2.15A
           {Listeria monocytogenes serotype 4B}
          Length = 455

 Score = 28.6 bits (64), Expect = 0.83
 Identities = 11/35 (31%), Positives = 17/35 (48%)

Query: 94  AQASNITDLTNIDLREWIKGIETNVDSLSPVSSGL 128
               +I + T  +LREWI   +T    +  V+ GL
Sbjct: 84  RIHDSIKNWTVEELREWILDHKTTDADIKRVARGL 118


>3abq_A Ethanolamine ammonia-lyase heavy chain; (beta/alpha)8 fold, cobalt,
           cobalamin; HET: B12; 2.05A {Escherichia coli} PDB:
           3abo_A* 3abr_A* 3abs_A* 3any_A* 3ao0_A*
          Length = 453

 Score = 28.2 bits (63), Expect = 1.1
 Identities = 10/35 (28%), Positives = 19/35 (54%)

Query: 94  AQASNITDLTNIDLREWIKGIETNVDSLSPVSSGL 128
              + I + +  +LRE++   ET+VD ++    GL
Sbjct: 83  TAYNQIKNWSISELREYVLSDETSVDDIAFTRKGL 117


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
           photosynthetic reaction center, peripheral antenna; HET:
           CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 27.6 bits (60), Expect = 1.1
 Identities = 5/25 (20%), Positives = 14/25 (56%), Gaps = 1/25 (4%)

Query: 108 REWIKGIETNVDSLSPVSS-GLDIK 131
           ++ +K ++ ++   +  S+  L IK
Sbjct: 19  KQALKKLQASLKLYADDSAPALAIK 43


>2ysr_A DEP domain-containing protein 1; structural genomics, NPPSFA,
          national project on protein structural and functional
          analyses; NMR {Homo sapiens}
          Length = 105

 Score = 26.3 bits (58), Expect = 2.2
 Identities = 6/31 (19%), Positives = 16/31 (51%), Gaps = 2/31 (6%)

Query: 20 KAVRTWAGESIGEELQAGHVIKRRIEHLKEH 50
          +A + W    +    +AG  +++  +H K++
Sbjct: 9  RATKLW--NEVTTSFRAGMPLRKHRQHFKKY 37


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 27.1 bits (59), Expect = 2.8
 Identities = 18/111 (16%), Positives = 41/111 (36%), Gaps = 26/111 (23%)

Query: 31  GEELQAGHVIKRRIEHLKE--HSGN--VLS----NTSQSEASINQWKKTRLDRM--LIEY 80
            + L     +  R + L     + N   LS    +     A+ + WK    D++  +IE 
Sbjct: 303 VKSLLL-KYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES 361

Query: 81  FLR-------KGYYSTAQKLA---QASNITDLTNIDLREWIKGIETNVDSL 121
            L        +  +    +L+    +++I  +    +  W   I+++V  +
Sbjct: 362 SLNVLEPAEYRKMF---DRLSVFPPSAHIPTILLSLI--WFDVIKSDVMVV 407


>4d8o_A Ankyrin-2; ZU5, UPA, death domain, supramodule, protein binding;
           2.20A {Homo sapiens}
          Length = 581

 Score = 26.9 bits (58), Expect = 2.9
 Identities = 11/42 (26%), Positives = 20/42 (47%), Gaps = 5/42 (11%)

Query: 76  MLIEYFLRKGYYSTAQKLAQASNITDLTNIDLREWIKGIETN 117
           +L  +  R G ++T   L +      LT I+  + +  +ETN
Sbjct: 544 LLKYWLERDGKHATDTNLVEC-----LTKINRMDIVHLMETN 580


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.311    0.127    0.368 

Gapped
Lambda     K      H
   0.267   0.0431    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,210,880
Number of extensions: 116352
Number of successful extensions: 211
Number of sequences better than 10.0: 1
Number of HSP's gapped: 211
Number of HSP's successfully gapped: 11
Length of query: 147
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 62
Effective length of database: 4,328,508
Effective search space: 268367496
Effective search space used: 268367496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 53 (25.0 bits)