RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17986
         (147 letters)



>d1qs1a1 d.166.1.1 (A:60-264) Vegetative insecticidal protein 2
           (VIP2) {Bacillus cereus [TaxId: 1396]}
          Length = 205

 Score = 25.0 bits (54), Expect = 3.9
 Identities = 10/86 (11%), Positives = 26/86 (30%), Gaps = 2/86 (2%)

Query: 61  SEASINQWKKTRLDRMLIEYFLRKGYYSTAQKLAQASNITDLTNIDLREWIKGIETNVDS 120
            +    +WK T  ++  +  FL               ++      D  + +K I   +  
Sbjct: 18  GKEKEKEWKLTATEKGKMNNFLDNKNDIKTNYKEITFSMAGS-FEDEIKDLKEI-DKMFD 75

Query: 121 LSPVSSGLDIKRHTWLRTSLRRNPSK 146
            + +S+ +   ++    T        
Sbjct: 76  KTNLSNSIITYKNVEPTTIGFNKSLT 101


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.311    0.127    0.368 

Gapped
Lambda     K      H
   0.267   0.0672    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 539,193
Number of extensions: 21990
Number of successful extensions: 42
Number of sequences better than 10.0: 1
Number of HSP's gapped: 42
Number of HSP's successfully gapped: 3
Length of query: 147
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 70
Effective length of database: 1,350,386
Effective search space: 94527020
Effective search space used: 94527020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 49 (22.8 bits)