BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17993
(191 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CIQ|A Chain A, Structure-Based Functional Annotation: Yeast Ymr099c Codes
For A D-Hexose-6-Phosphate Mutarotase
Length = 297
Score = 95.9 bits (237), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 55/151 (36%), Positives = 79/151 (52%), Gaps = 4/151 (2%)
Query: 43 LHFNIGVYNPSNDLAFNFNLLLHTYLKVPDVRRCQVNGLYGCHYIDKVLDNQLFRETRET 102
L I V N S+ FN L HTY ++ D+ V+ L G D++L + + +
Sbjct: 137 LKTAIEVENTSSSKELKFNWLFHTYFRIEDIEGTMVSNLAGMKLYDQLL-KESYVDKHPV 195
Query: 103 VSVSSLTDRIYQNTCQEHVVTNVVSGRKMR-LQKYNFPDTVIWNPW-DTGRDMKDFGDDE 160
V+ + TD IYQN E + V G ++ L++YN PDTV+WNPW + + M DF
Sbjct: 196 VTFNQETDVIYQNVSAERAIQIVDKGVQIHTLKRYNLPDTVVWNPWIEKSQGMADFEPKT 255
Query: 161 -YPNMICVEAGHVTSPVLLHPGTTFEASQIL 190
Y MIC+E GHV + L PG + A Q+L
Sbjct: 256 GYQQMICIEPGHVHDFISLAPGKKWNAYQLL 286
>pdb|2CIR|A Chain A, Structure-Based Functional Annotation: Yeast Ymr099c Codes
For A D-Hexose-6-Phosphate Mutarotase. Complex With
Glucose-6-Phosphate
pdb|2CIS|A Chain A, Structure-Based Functional Annotation: Yeast Ymr099c Codes
For A D-Hexose-6-Phosphate Mutarotase. Complex With
Tagatose-6-Phosphate
Length = 297
Score = 95.9 bits (237), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 55/151 (36%), Positives = 79/151 (52%), Gaps = 4/151 (2%)
Query: 43 LHFNIGVYNPSNDLAFNFNLLLHTYLKVPDVRRCQVNGLYGCHYIDKVLDNQLFRETRET 102
L I V N S+ FN L HTY ++ D+ V+ L G D++L + + +
Sbjct: 137 LKTAIEVENTSSSKELKFNWLFHTYFRIEDIEGTMVSNLAGMKLYDQLL-KESYVDKHPV 195
Query: 103 VSVSSLTDRIYQNTCQEHVVTNVVSGRKMR-LQKYNFPDTVIWNPW-DTGRDMKDFGDDE 160
V+ + TD IYQN E + V G ++ L++YN PDTV+WNPW + + M DF
Sbjct: 196 VTFNQETDVIYQNVSAERAIQIVDKGVQIHTLKRYNLPDTVVWNPWIEKSQGMADFEPKT 255
Query: 161 -YPNMICVEAGHVTSPVLLHPGTTFEASQIL 190
Y MIC+E GHV + L PG + A Q+L
Sbjct: 256 GYQQMICIEPGHVHDFISLAPGKKWNAYQLL 286
>pdb|2HTA|A Chain A, Crystal Structure Of A Putative Mutarotase (Yead) From
Salmonella Typhimurium In Orthorhombic Form
pdb|2HTA|B Chain B, Crystal Structure Of A Putative Mutarotase (Yead) From
Salmonella Typhimurium In Orthorhombic Form
pdb|2HTB|A Chain A, Crystal Structure Of A Putative Mutarotase (Yead) From
Salmonella Typhimurium In Monoclinic Form
pdb|2HTB|B Chain B, Crystal Structure Of A Putative Mutarotase (Yead) From
Salmonella Typhimurium In Monoclinic Form
pdb|2HTB|C Chain C, Crystal Structure Of A Putative Mutarotase (Yead) From
Salmonella Typhimurium In Monoclinic Form
pdb|2HTB|D Chain D, Crystal Structure Of A Putative Mutarotase (Yead) From
Salmonella Typhimurium In Monoclinic Form
Length = 309
Score = 50.1 bits (118), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 55/119 (46%), Gaps = 2/119 (1%)
Query: 58 FNFNLLLHTYLKVPDVRRCQVNGLYGCHYIDKVLDNQLFRETRETVSVSSLTDRIYQNTC 117
F LH+Y V D+ +V+GL G +IDKV D + T + TDR+Y N
Sbjct: 172 FATTSALHSYFNVGDIANVKVSGL-GDRFIDKVNDAKEGVLTDGIQTFPDRTDRVYLNPE 230
Query: 118 QEHVVTNVVSGRKMRLQKYNFPDTVIWNPWDT-GRDMKDFGDDEYPNMICVEAGHVTSP 175
V+ + R + + ++ + V WNP M D DD Y +CVE + T+P
Sbjct: 231 ACSVIHDATLNRTIDVVHHHHLNVVGWNPGPALSVSMGDMPDDGYKTFVCVETVYATAP 289
>pdb|1JOV|A Chain A, Crystal Structure Analysis Of Hi1317
Length = 270
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 47/112 (41%), Gaps = 11/112 (9%)
Query: 64 LHTYLKVPDVRRCQVNGLYGCHYIDKVLDNQLFRETRETVS---VSSLTDRIYQNTCQEH 120
LHTY + D+ + +V GL + N L ++ S +S D IY ++
Sbjct: 149 LHTYFNIGDINQVEVQGL------PETCFNSLNQQQENVPSPRHISENVDCIYSAENMQN 202
Query: 121 VVTNVVSGRKMRLQKYNFPDTVIWNPWDTGRDMKDFGDDEYPNMICVEAGHV 172
+ + R + L +N V+WNPW + + Y M+C+E +
Sbjct: 203 QILDKSFNRTIALHHHNASQFVLWNPWH--KKTSGMSETGYQKMLCLETARI 252
>pdb|1Y4H|A Chain A, Wild Type Staphopain-staphostatin Complex
pdb|1Y4H|B Chain B, Wild Type Staphopain-staphostatin Complex
Length = 188
Score = 31.6 bits (70), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 7/74 (9%)
Query: 85 HYIDKVLD-NQLFRETRETVSVSSLTDRIYQNTCQEHV--VTNVVSGRKMRLQKYNFPDT 141
HY + V NQ+ + T++ V + L + QN H+ VV K+ Q+
Sbjct: 96 HYQEGVPSYNQVDQLTKDNVGIMILAQSVSQNPNDPHLGHALAVVGNAKINDQE----KL 151
Query: 142 VIWNPWDTGRDMKD 155
+ WNPWDT ++D
Sbjct: 152 IYWNPWDTELSIQD 165
>pdb|1PXV|A Chain A, The Staphostatin-Staphopain Complex: A Forward Binding
Inhibitor In Complex With Its Target Cysteine Protease
pdb|1PXV|B Chain B, The Staphostatin-Staphopain Complex: A Forward Binding
Inhibitor In Complex With Its Target Cysteine Protease
Length = 183
Score = 31.6 bits (70), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 7/74 (9%)
Query: 85 HYIDKVLD-NQLFRETRETVSVSSLTDRIYQNTCQEHV--VTNVVSGRKMRLQKYNFPDT 141
HY + V NQ+ + T++ V + L + QN H+ VV K+ Q+
Sbjct: 91 HYQEGVPSYNQVDQLTKDNVGIMILAQSVSQNPNDPHLGHALAVVGNAKINDQE----KL 146
Query: 142 VIWNPWDTGRDMKD 155
+ WNPWDT ++D
Sbjct: 147 IYWNPWDTELSIQD 160
>pdb|1X9Y|A Chain A, The Prostaphopain B Structure
pdb|1X9Y|B Chain B, The Prostaphopain B Structure
pdb|1X9Y|C Chain C, The Prostaphopain B Structure
pdb|1X9Y|D Chain D, The Prostaphopain B Structure
Length = 367
Score = 30.4 bits (67), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 7/75 (9%)
Query: 84 CHYIDKVLD-NQLFRETRETVSVSSLTDRIYQNTCQEHV--VTNVVSGRKMRLQKYNFPD 140
HY + V NQ+ + T++ V + L + QN H+ VV K+ Q+
Sbjct: 266 IHYQEGVPSYNQVDQLTKDNVGIMILAQSVSQNPNDPHLGHALAVVGNAKINDQE----K 321
Query: 141 TVIWNPWDTGRDMKD 155
+ WNPWDT ++D
Sbjct: 322 LIYWNPWDTELSIQD 336
>pdb|3H9U|A Chain A, S-Adenosyl Homocysteine Hydrolase (Sahh) From Trypanosoma
Brucei
pdb|3H9U|B Chain B, S-Adenosyl Homocysteine Hydrolase (Sahh) From Trypanosoma
Brucei
pdb|3H9U|C Chain C, S-Adenosyl Homocysteine Hydrolase (Sahh) From Trypanosoma
Brucei
pdb|3H9U|D Chain D, S-Adenosyl Homocysteine Hydrolase (Sahh) From Trypanosoma
Brucei
Length = 436
Score = 27.3 bits (59), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 147 WDTGRDMKDFGDDEYPNMICVEAGHVTSPVL 177
W + +K F D YPNM+ + G +T+ VL
Sbjct: 108 WCMKQTLKGFSGDGYPNMLLDDGGDLTNYVL 138
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.142 0.451
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,994,812
Number of Sequences: 62578
Number of extensions: 240880
Number of successful extensions: 403
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 392
Number of HSP's gapped (non-prelim): 8
length of query: 191
length of database: 14,973,337
effective HSP length: 93
effective length of query: 98
effective length of database: 9,153,583
effective search space: 897051134
effective search space used: 897051134
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 48 (23.1 bits)