RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17993
(191 letters)
>2cir_A Hexose-6-phosphate mutarotase; hypothetical protein, isomerase;
HET: BG6; 1.60A {Saccharomyces cerevisiae} PDB: 2ciq_A*
2cis_A*
Length = 297
Score = 151 bits (381), Expect = 2e-45
Identities = 58/171 (33%), Positives = 84/171 (49%), Gaps = 6/171 (3%)
Query: 23 IFPYFARFRLTYRLILREKELHFNIGVYNPSNDLAFNFNLLLHTYLKVPDVRRCQVNGLY 82
++P + L + L L I V N S+ FN L HTY ++ D+ V+ L
Sbjct: 119 LWPM--DYLLILTVELGSDYLKTAIEVENTSSSKELKFNWLFHTYFRIEDIEGTMVSNLA 176
Query: 83 GCHYIDKVLDNQLFRETRETVSVSSLTDRIYQNTCQEHVVTNVVSGRKMR-LQKYNFPDT 141
G D+ L + + + V+ + TD IYQN E + V G ++ L++YN PDT
Sbjct: 177 GMKLYDQ-LLKESYVDKHPVVTFNQETDVIYQNVSAERAIQIVDKGVQIHTLKRYNLPDT 235
Query: 142 VIWNPWDT-GRDMKDFGDDE-YPNMICVEAGHVTSPVLLHPGTTFEASQIL 190
V+WNPW + M DF Y MIC+E GHV + L PG + A Q+L
Sbjct: 236 VVWNPWIEKSQGMADFEPKTGYQQMICIEPGHVHDFISLAPGKKWNAYQLL 286
>2hta_A Putative enzyme related to aldose 1-epimerase; carbohydrate, MU
YEAD, GALM, sugar phosphate, isomerase; 1.90A
{Salmonella typhimurium} PDB: 2htb_A
Length = 309
Score = 145 bits (366), Expect = 3e-43
Identities = 41/167 (24%), Positives = 66/167 (39%), Gaps = 8/167 (4%)
Query: 25 PYFARFRLTYRLILREKELHFNIGVYNPSNDLAFNFNLLLHTYLKVPDVRRCQVNGLYGC 84
+ F L R + + + + F LH+Y V D+ +V+GL G
Sbjct: 145 YWPHDFTLLARFKVGK-TCEIELEAHGE-----FATTSALHSYFNVGDIANVKVSGL-GD 197
Query: 85 HYIDKVLDNQLFRETRETVSVSSLTDRIYQNTCQEHVVTNVVSGRKMRLQKYNFPDTVIW 144
+IDKV D + T + TDR+Y N V+ + R + + ++ + V W
Sbjct: 198 RFIDKVNDAKEGVLTDGIQTFPDRTDRVYLNPEACSVIHDATLNRTIDVVHHHHLNVVGW 257
Query: 145 NPW-DTGRDMKDFGDDEYPNMICVEAGHVTSPVLLHPGTTFEASQIL 190
NP M D DD Y +CVE + T+P +Q +
Sbjct: 258 NPGPALSVSMGDMPDDGYKTFVCVETVYATAPQQATEEKPSRLAQTI 304
>1jov_A HI1317; hypothetical protein, structure 2 function project, S2F,
structural genomics, unknown function; 1.57A
{Haemophilus influenzae} SCOP: b.30.5.7
Length = 270
Score = 124 bits (313), Expect = 1e-35
Identities = 32/168 (19%), Positives = 57/168 (33%), Gaps = 17/168 (10%)
Query: 24 FPYFARFRLTYRLILREKELHFNIGVYNPSNDLAFNFNLLLHTYLKVPDVRRCQVNGLYG 83
A+ + + L F ++ + LHTY + D+ + +V GL
Sbjct: 119 NIIEAKVSMVFTDKC---HLTF-------THYGEESAQAALHTYFNIGDINQVEVQGLPE 168
Query: 84 CHYIDKVLDNQLFRETRETVSVSSLTDRIYQNTCQEHVVTNVVSGRKMRLQKYNFPDTVI 143
+ NQ +S D IY ++ + + R + L +N V+
Sbjct: 169 TCFNSL---NQQQENVPSPRHISENVDCIYSAENMQNQILDKSFNRTIALHHHNASQFVL 225
Query: 144 WNPWDTGRDMKDFGDDEYPNMICVEAGHVTSPVLLHPGTTFEASQILQ 191
WNPW + Y M+C+E + L G + L+
Sbjct: 226 WNPWHKK--TSGMSETGYQKMLCLETARIHHL--LEFGESLSVEISLK 269
>3k25_A SLR1438 protein; structural genomics, PSI-2, protein structure
initiative, no structural genomics consortium, NESG,
SGR112, P73504_SYNY3; 2.55A {Synechocystis SP}
Length = 289
Score = 95.6 bits (238), Expect = 2e-24
Identities = 25/179 (13%), Positives = 50/179 (27%), Gaps = 28/179 (15%)
Query: 23 IFPYFARFRLTYRLILREKELHFNIGVYNPSNDLAFNFNLLLHTYLKVPDVRRCQVNGLY 82
FP+ F L + L+ L + N + F+L H Y + + +
Sbjct: 125 AFPF--AFELVFSYQLQGHSLRIEQRIANLGDQ-RMPFSLGFHPYFFCREKLGITL-AIP 180
Query: 83 GCHYIDKVLDNQLFRETRETVSVSSLTDRIYQN-TCQEHVVTNVVSGRKMRLQ-KYNFPD 140
Y+D+ + S D + + + K+ + +
Sbjct: 181 ANDYLDQ-KTGDCHGYDGQLNLTSPELDLAFTQISQPRAHFIDPDRNLKIEVSFSELYQT 239
Query: 141 TVIWNPWDTGRDMKDFGDDEYPNMICVE--------AGHVTSPVLLHPGTTFEASQILQ 191
V+W KD+ +C+E + P ++ A Q
Sbjct: 240 LVLWTVAG-----KDY--------LCLEPWSGPRNALNSGEQLAWVEPYSSRSAWVNFQ 285
>3dcd_A Galactose mutarotase related enzyme; Q5FKD7 LAR33 NESG X-RAY,
structural genomics, PSI-2, protein structure
initiative; HET: MSE; 1.90A {Lactobacillus acidophilus}
Length = 307
Score = 63.0 bits (153), Expect = 2e-12
Identities = 34/198 (17%), Positives = 55/198 (27%), Gaps = 46/198 (23%)
Query: 23 IFPYFARFRLTYRLILREKELHFNIGVYNPSNDLAFNFNLLLHTYLKVPDVRRCQVNGLY 82
++P+ FR+ Y L L N V N S D F + H +P Y
Sbjct: 104 VYPFKFEFRVNYNL--MNNLLEENFSVVNKS-DETMIFGVGGHPGFNLPTDHGENKEDFY 160
Query: 83 ------GCHYIDKVLDNQLFRETRETVSVSSLTDR----------IYQNTCQEHVVT--N 124
+ D L R SL IY+ ++ V+
Sbjct: 161 FDMHPSVTRVRIPLKDASLDWNNRSLAPTDSLIALSDDLFKDDALIYELRGNDNKVSLRT 220
Query: 125 VVSGRKMRLQKYNFPDTVIWNPWDTGRDMKDFGDDEYPNMICVE--AGHVTSP------- 175
+ + + + P IW+ + + +C+E G
Sbjct: 221 DKNKFHVNVWTRDAPFVGIWSQYPKTDN-----------YVCIEPWWGIADRDDADGDLE 269
Query: 176 -----VLLHPGTTFEASQ 188
L PG F+A
Sbjct: 270 HKYGMNHLKPGKEFQAGF 287
>3q1n_A Galactose mutarotase related enzyme; structural genomics, joint
center for structural genomics, J protein structure
initiative, PSI-biology; HET: MSE; 1.61A {Lactobacillus
casei}
Length = 294
Score = 59.9 bits (145), Expect = 3e-11
Identities = 26/199 (13%), Positives = 45/199 (22%), Gaps = 48/199 (24%)
Query: 23 IFPYFARFRLTYRLILREKELHFNIGVYNPSNDLAFNFNLLLHTYLKVPDVRRCQVNGLY 82
FP+ +TY L + L + V N + F L H V +
Sbjct: 104 KFPFEYTLAVTYML--TDGGLSVHYTVTNDD-SKSMPFALGFHPAFNVGLKADGSFDDYD 160
Query: 83 GC-----HYIDKVLDNQLFRETRETVSVSSLTDR--------------IYQNTCQEHV-V 122
+ + + + + I N+ +
Sbjct: 161 LTVEPLNSPLQRFGIGPVPFRNGDVEDIPGAEGNRLPLTHDLLDGGLVILANSEIAKATL 220
Query: 123 TNVVSGRKMRLQKYNFPDTVIWNPWDTGRDMKDFGDDEYPNMICVE--AGHVTSP----- 175
+ + L +FP IW+P I VE G
Sbjct: 221 ASPHHDHSITLDISDFPYLTIWSPEHKKAP-----------FIAVEPFDGLPDQAGEPTD 269
Query: 176 -------VLLHPGTTFEAS 187
L G + +
Sbjct: 270 WYTKLGNTTLSAGANKQLA 288
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 36.2 bits (83), Expect = 0.006
Identities = 32/183 (17%), Positives = 56/183 (30%), Gaps = 79/183 (43%)
Query: 68 LKVPDVRRCQVNGLYGCHYIDKVLDNQLFRETRETVSVSSLTDRIYQNTCQEHVVT---- 123
L + ++ + QV Y++K N + V +S L N + VV+
Sbjct: 339 LSISNLTQEQVQD-----YVNKT--NSHLPAGK-QVEIS-LV-----NGAKNLVVSGPPQ 384
Query: 124 -----NVV-----------------SGRKMRLQKYNF-----P----------------- 139
N+ S RK++ F P
Sbjct: 385 SLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFS-NRFLPVASPFHSHLLVPASDLINKDL 443
Query: 140 --DTVIWNP-------WDT--GRDMKDFGDDEYPNMI-CVEAGHVTSPVLLHPGTTFEAS 187
+ V +N +DT G D++ ++ C+ + PV T F+A+
Sbjct: 444 VKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCI----IRLPVKWETTTQFKAT 499
Query: 188 QIL 190
IL
Sbjct: 500 HIL 502
Score = 26.2 bits (57), Expect = 8.3
Identities = 34/207 (16%), Positives = 60/207 (28%), Gaps = 71/207 (34%)
Query: 27 FARFRLTYRLILREKELHFNIGVYNPSNDLAF-NFNLLLHTYLKVPDVRRCQVNGLYGCH 85
F Y L ++H ND L+ Y+ R
Sbjct: 88 LTEFENCY---LEGNDIHALAAKLLQENDTTLVKTKELIKNYITA----RIMAK-----R 135
Query: 86 YIDKVLDNQLFRETRETVSVSSLTDRIY-----Q---NTC----QE------HVVTNVVS 127
DK ++ LFR +V ++ Q + ++ +V +++
Sbjct: 136 PFDKKSNSALFR------AVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIK 189
Query: 128 GRKMRLQ---------KYNFP---DTVIW--NPWDTGRDMKDFGDDEY--------PNMI 165
L + F + + W NP +T D +Y P +I
Sbjct: 190 FSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNT-------PDKDYLLSIPISCP-LI 241
Query: 166 CV-EAGH--VTSPVL-LHPGTTFEASQ 188
V + H VT+ +L PG +
Sbjct: 242 GVIQLAHYVVTAKLLGFTPGELRSYLK 268
>3nre_A Aldose 1-epimerase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2, isomerase; HET: MSE; 1.59A {Escherichia coli}
Length = 291
Score = 34.0 bits (78), Expect = 0.020
Identities = 21/182 (11%), Positives = 43/182 (23%), Gaps = 27/182 (14%)
Query: 24 FPYFARFRLTYRLILREKELHFNIGVYNPSNDLAFNFNLLLHTYLKVPDVRRCQVNGLYG 83
Y R + L L + V N F H Y + R Q
Sbjct: 111 GVYHYRVSQAFHL--TADTLTVTLSVTNQG-AETLPFGTGWHPYFPLSPQTRIQAQASGY 167
Query: 84 CHYIDKVLDNQLFRET------RETVSVSSLT-DRIYQNTCQEHVVTNVVSGRKMRLQ-K 135
++ L + + + + + + + + G + ++
Sbjct: 168 WLEREQWLAGEFCEQLPQELDFNQPAPLPRQWVNNGFAGWNGQARIEQPQEGYAIIMETT 227
Query: 136 YNFPDTVIWNPWDTGRDMKDFGDDEYPNMICVE----------AGHVTSPVLLHPGTTFE 185
P I+ F + C+E + L PG +
Sbjct: 228 PPAPCYFIFVSDPAFDKGYAF------DFFCLEPMSHAPDDHHRPEGGDLIALAPGESTT 281
Query: 186 AS 187
+
Sbjct: 282 SE 283
>3os7_A Galactose mutarotase-like protein; structural genomics, joint
center for structural genomics, J protein structure
initiative; HET: PG4 TLA; 1.80A {Clostridium
acetobutylicum}
Length = 341
Score = 33.7 bits (77), Expect = 0.026
Identities = 29/207 (14%), Positives = 56/207 (27%), Gaps = 53/207 (25%)
Query: 19 DIFCIFPYFARFRLTYRLILREKELHFNIGVYNPSNDLAFNFNLLLHTYLKVPDVRRCQV 78
+ + F + +F+L+Y L K L V N S++ ++ H+ VP + +
Sbjct: 142 EAYKYFSHEFQFKLSYE--LSSKGLKQTTSVVNLSSEEMP-LSVGYHSAFNVPFIEGSED 198
Query: 79 NGLY------------------GCHYIDKVLDNQLFRETRETVSVS-----SLTDRIYQN 115
+ G + + S SL D
Sbjct: 199 SNCRVKISIDKFWKQDSRNLPTGESFAPTGEQKEYLENGVAVASHPIESLFSLKDIDVNG 258
Query: 116 TCQEHV-VTNVVSGRKMRLQKY-NFPDTVIWNPWDTGRDMKDFGDDEYPNMICVE--AGH 171
+ + ++ + + VIWN K + C+E
Sbjct: 259 KTFRGACIEDASKNTRVVYEMSSEYKYLVIWND----MGDKKY--------ACIEPQTSI 306
Query: 172 VTSP-----------VLLHPGTTFEAS 187
+ SP L P ++
Sbjct: 307 INSPNVKLDRSVSGFKTLKPNESWSGV 333
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.4 bits (70), Expect = 0.19
Identities = 28/211 (13%), Positives = 57/211 (27%), Gaps = 72/211 (34%)
Query: 23 IFPYFARFRLTYRLILRE--KEL--HFNIGVY----------------NPSNDLAFNFNL 62
+F + RL L LR+ EL N+ + + +F +
Sbjct: 125 VFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKI 184
Query: 63 LLHTYLKV-----PDVRRCQVNGLYGCHYIDKVLDNQLFRETRETVSVSSLTDRIYQNTC 117
+L + P+ + L + ID ++ + + + S+ +
Sbjct: 185 F---WLNLKNCNSPETVLEMLQKL--LYQIDPNWTSRSDHSSNIKLRIHSIQAEL----- 234
Query: 118 QEHVVTNVVSGRKMRLQKYNFPDTVI-----WNPWD------------TGRDMKDFGDDE 160
R ++ + Y + ++ N T R K D
Sbjct: 235 ----------RRLLKSKPY--ENCLLVLLNVQNAKAWNAFNLSCKILLTTRF-KQVTDF- 280
Query: 161 YPNMICVEAGHVTSPVLLHPGTTFEASQILQ 191
+ A T L H T ++
Sbjct: 281 ------LSAATTTHISLDHHSMTLTPDEVKS 305
Score = 26.7 bits (58), Expect = 6.0
Identities = 28/171 (16%), Positives = 53/171 (30%), Gaps = 45/171 (26%)
Query: 17 YLDIFCIF-PYFAR-FRLTY-----RLILREKELHFNIGVYNPSNDLAFNFNLLL----- 64
Y DI +F F F + IL ++E+ I + + F LL
Sbjct: 18 YKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEE 77
Query: 65 -------------HTYLKVPDVRRCQVNGLYGCHYIDKVL----DNQLFRE---TRETVS 104
+ +L P + + YI++ DNQ+F + +R
Sbjct: 78 MVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQ-P 136
Query: 105 VSSLTDRIYQNTCQEHVVTNVVSG-----------RKMRLQKYNFPDTVIW 144
L + + ++V+ + V G ++Q + W
Sbjct: 137 YLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQC-KMDFKIFW 186
>2xci_A KDO-transferase, 3-deoxy-D-manno-2-octulosonic acid transferase;
KDTA, GSEA, glycosyltransferase superfamily B,; HET:
PG4; 2.00A {Aquifex aeolicus} PDB: 2xcu_A*
Length = 374
Score = 30.7 bits (70), Expect = 0.25
Identities = 10/57 (17%), Positives = 20/57 (35%), Gaps = 3/57 (5%)
Query: 101 ETVSVSSLTDRIYQNTCQEHVVTNV-VSGRKMRLQKYNFPDTVIWNPWDTGRDMKDF 156
E + + + + ++T R+ K +F D + P D +K F
Sbjct: 52 EFNTFLPILKELKRE--HRILLTYFSPRAREYLKTKSDFYDCLHPLPLDNPFSVKRF 106
>3mwx_A Aldose 1-epimerase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2, isomerase; HET: MSE; 1.45A {Bacillus subtilis}
Length = 326
Score = 30.5 bits (69), Expect = 0.27
Identities = 11/48 (22%), Positives = 18/48 (37%), Gaps = 3/48 (6%)
Query: 24 FPYFARFRLTYRLILREKELHFNIGVYNPSNDLAFNFNLLLHTYLKVP 71
FP+ + ++E L + V N AF + + HT P
Sbjct: 140 FPH--HAVVRMTYTIKENTLFKHATVMNKG-KEAFPWGIGYHTTFIFP 184
>1pxv_A Cysteine protease; hydrolase; 1.80A {Staphylococcus aureus} SCOP:
d.3.1.1 PDB: 1y4h_A
Length = 183
Score = 30.2 bits (67), Expect = 0.30
Identities = 16/74 (21%), Positives = 28/74 (37%), Gaps = 10/74 (13%)
Query: 93 NQLFRETRETVSVSSLTDRIYQNTCQEHVVTNVVSGRKMRLQKYNFPD----TVIWNPWD 148
NQ+ + T++ V + L + QN H G + + + + WNPWD
Sbjct: 100 NQVDQLTKDNVGIMILAQSVSQNPNDPH------LGHALAVVGNAKINDQEKLIYWNPWD 153
Query: 149 TGRDMKDFGDDEYP 162
T ++D
Sbjct: 154 TELSIQDADSSLLH 167
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.8 bits (58), Expect = 2.9
Identities = 6/23 (26%), Positives = 10/23 (43%), Gaps = 6/23 (26%)
Query: 41 KELHFNIGVYNPSND----LAFN 59
K+L ++ +Y D LA
Sbjct: 23 KKLQASLKLYAD--DSAPALAIK 43
>1x9y_A Cysteine proteinase; half-barrel, barrel-sandwich-hybrid,
hydrolase; 2.50A {Staphylococcus aureus} SCOP: d.3.1.1
d.17.1.4
Length = 367
Score = 26.5 bits (57), Expect = 6.2
Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 11/71 (15%)
Query: 85 HYIDKVLD-NQLFRETRETVSVSSLTDRIYQNTCQEHVVTNVVSGRKMRLQKYNFPDT-- 141
HY + V NQ+ + T++ V + L + QN H G + + +
Sbjct: 267 HYQEGVPSYNQVDQLTKDNVGIMILAQSVSQNPNDPH------LGHALAVVGNAKINDQE 320
Query: 142 --VIWNPWDTG 150
+ WNPWDT
Sbjct: 321 KLIYWNPWDTE 331
>1ea0_A Glutamate synthase [NADPH] large chain; oxidoreductase, iron sulphur
flavoprotein; HET: OMT FMN AKG; 3.0A {Azospirillum
brasilense} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 2vdc_A*
Length = 1479
Score = 26.3 bits (59), Expect = 7.9
Identities = 8/45 (17%), Positives = 16/45 (35%), Gaps = 3/45 (6%)
Query: 59 NFNLLLHTYLKVPDVRRCQVNGLYGCHYIDKVLDNQLFRETRETV 103
+ N L + R C + G + + LD ++ + R
Sbjct: 1182 DLNPRLAQVDPGENARYCTLQGR---NEVPDTLDARIVADARPLF 1223
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.326 0.142 0.451
Gapped
Lambda K H
0.267 0.0621 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,049,535
Number of extensions: 172445
Number of successful extensions: 460
Number of sequences better than 10.0: 1
Number of HSP's gapped: 442
Number of HSP's successfully gapped: 24
Length of query: 191
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 103
Effective length of database: 4,244,745
Effective search space: 437208735
Effective search space used: 437208735
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (24.8 bits)