RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17993
         (191 letters)



>d1jova_ b.30.5.7 (A:) Hypothetical protein HI1317 {Haemophilus
           influenzae [TaxId: 727]}
          Length = 269

 Score =  116 bits (292), Expect = 6e-33
 Identities = 33/166 (19%), Positives = 59/166 (35%), Gaps = 10/166 (6%)

Query: 29  RFRLTYRLILREKELHFNIGVYNP---SNDLAFNFNLLLHTYLKVPDVRRCQVNGLYGCH 85
            F L   L + E ++            ++    +    LHTY  + D+ + +V GL    
Sbjct: 111 EFELFSDLNIIEAKVSMVFTDKCHLTFTHYGEESAQAALHTYFNIGDINQVEVQGLPETC 170

Query: 86  YIDKVLDNQLFRETRETVSVSSLTDRIYQNTCQEHVVTNVVSGRKMRLQKYNFPDTVIWN 145
           +      NQ          +S   D IY     ++ + +    R + L  +N    V+WN
Sbjct: 171 FNS---LNQQQENVPSPRHISENVDCIYSAENMQNQILDKSFNRTIALHHHNASQFVLWN 227

Query: 146 PWDTGRDMKDFGDDEYPNMICVEAGHVTSPVLLHPGTTFEASQILQ 191
           PW   +      +  Y  M+C+E   +     L  G +      L+
Sbjct: 228 PWH--KKTSGMSETGYQKMLCLETARIHHL--LEFGESLSVEISLK 269


>d1pxva_ d.3.1.1 (A:) Staphopain SspB {Staphylococcus aureus [TaxId:
           1280]}
          Length = 183

 Score = 28.7 bits (64), Expect = 0.30
 Identities = 10/22 (45%), Positives = 14/22 (63%), Gaps = 1/22 (4%)

Query: 135 KYNFPDTVI-WNPWDTGRDMKD 155
           K N  + +I WNPWDT   ++D
Sbjct: 139 KINDQEKLIYWNPWDTELSIQD 160


>d1cv8a_ d.3.1.1 (A:) Staphopain StpA {Staphylococcus aureus [TaxId:
           1280]}
          Length = 173

 Score = 28.0 bits (62), Expect = 0.48
 Identities = 8/14 (57%), Positives = 10/14 (71%)

Query: 142 VIWNPWDTGRDMKD 155
           +IWNPWD G   +D
Sbjct: 137 IIWNPWDNGFMTQD 150


>d1a78a_ b.29.1.3 (A:) Galectin-1 {Toad (Bufo arenarum) [TaxId:
          38577]}
          Length = 134

 Score = 24.8 bits (54), Expect = 5.6
 Identities = 5/42 (11%), Positives = 15/42 (35%), Gaps = 1/42 (2%)

Query: 44 HFNIGVYNPSNDLAFNFNLLLHTYLKVPDVRR-CQVNGLYGC 84
           F + +   +++   +FN     +  V  +    +    +G 
Sbjct: 30 GFAVNLGEDASNFLLHFNARFDLHGDVNKIVCNSKEADAWGS 71


>d1w6na_ b.29.1.3 (A:) Galectin-1 {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 134

 Score = 24.5 bits (53), Expect = 7.3
 Identities = 9/42 (21%), Positives = 18/42 (42%), Gaps = 1/42 (2%)

Query: 44 HFNIGVYNPSNDLAFNFNLLLHTYLKVPD-VRRCQVNGLYGC 84
           F + +   SN+L  +FN   + +      V   + +G +G 
Sbjct: 29 SFVLNLGKDSNNLCLHFNPRFNAHGDANTIVCNSKDDGAWGT 70


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.326    0.142    0.451 

Gapped
Lambda     K      H
   0.267   0.0598    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 764,564
Number of extensions: 35177
Number of successful extensions: 71
Number of sequences better than 10.0: 1
Number of HSP's gapped: 69
Number of HSP's successfully gapped: 8
Length of query: 191
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 111
Effective length of database: 1,309,196
Effective search space: 145320756
Effective search space used: 145320756
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.3 bits)