Query psy17994
Match_columns 268
No_of_seqs 130 out of 1054
Neff 5.7
Searched_HMMs 46136
Date Fri Aug 16 19:35:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17994.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17994hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4126|consensus 100.0 1.2E-74 2.7E-79 558.1 17.5 242 1-254 77-319 (529)
2 smart00098 alkPPc Alkaline pho 100.0 1.2E-68 2.5E-73 515.9 16.6 226 1-255 5-230 (419)
3 PF00245 Alk_phosphatase: Alka 100.0 2.7E-65 5.9E-70 493.6 13.6 227 1-255 6-232 (421)
4 PRK10518 alkaline phosphatase; 100.0 5.7E-63 1.2E-67 481.4 18.0 215 1-255 74-298 (476)
5 cd00016 alkPPc Alkaline phosph 100.0 2.2E-62 4.9E-67 468.6 18.4 214 1-255 11-224 (384)
6 COG1785 PhoA Alkaline phosphat 100.0 6.3E-57 1.4E-61 436.5 13.9 209 1-257 64-275 (482)
7 PF01663 Phosphodiest: Type I 53.0 8.7 0.00019 35.2 1.9 98 1-116 3-108 (365)
8 PRK13759 arylsulfatase; Provis 39.5 41 0.00088 33.4 4.3 93 1-118 11-104 (485)
9 PF14502 HTH_41: Helix-turn-he 34.8 12 0.00025 26.2 -0.2 23 96-118 3-25 (48)
10 PF06506 PrpR_N: Propionate ca 33.8 16 0.00035 31.2 0.4 88 63-179 42-134 (176)
11 COG3119 AslA Arylsulfatase A a 32.0 51 0.0011 32.7 3.7 64 60-128 54-120 (475)
12 PRK06769 hypothetical protein; 26.7 63 0.0014 27.3 2.9 24 97-120 31-54 (173)
13 TIGR01664 DNA-3'-Pase DNA 3'-p 25.9 66 0.0014 27.2 2.9 22 98-119 46-67 (166)
14 TIGR01509 HAD-SF-IA-v3 haloaci 24.8 72 0.0016 26.0 2.9 26 97-122 88-113 (183)
15 TIGR00213 GmhB_yaeD D,D-heptos 24.7 73 0.0016 26.7 2.9 24 97-120 29-52 (176)
16 PRK11587 putative phosphatase; 24.6 68 0.0015 27.7 2.8 24 97-120 86-109 (218)
17 TIGR03417 chol_sulfatase choli 24.0 54 0.0012 32.7 2.2 70 38-118 31-100 (500)
18 PRK08942 D,D-heptose 1,7-bisph 23.5 79 0.0017 26.6 2.9 24 97-120 32-55 (181)
19 TIGR01428 HAD_type_II 2-haloal 22.7 83 0.0018 26.5 2.9 24 97-120 95-118 (198)
20 TIGR02253 CTE7 HAD superfamily 22.4 84 0.0018 26.8 2.9 24 97-120 97-120 (221)
21 TIGR01681 HAD-SF-IIIC HAD-supe 20.5 88 0.0019 25.1 2.5 23 97-119 32-54 (128)
22 smart00854 PGA_cap Bacterial c 20.2 82 0.0018 28.0 2.5 24 156-183 195-218 (239)
No 1
>KOG4126|consensus
Probab=100.00 E-value=1.2e-74 Score=558.09 Aligned_cols=242 Identities=52% Similarity=0.916 Sum_probs=227.9
Q ss_pred CeecCCCChHHHHHHHHHHhccCCCCCCCCCCCCcccccccCCceeeeeeeecCCccCCchhhhhhhhcccccCCCeeee
Q psy17994 1 MFLGDGMSLPTITAARIYKGQLGERGPDEPRGEQDHLSFENFPFTGMAKTYCVDQQTADSACTATAYLCGVKNNFGTIGV 80 (268)
Q Consensus 1 lfIgDGmg~~~vtaaR~~~~~~~~~~~~~~~g~~~~L~~d~~p~~G~~~T~s~d~~vtDSAaaaTA~atG~Kt~n~~igv 80 (268)
||||||||+++|+|||+++++.+ .|++.+|.||+|||+|++||||+|++|||||++||||+||+|+++++|||
T Consensus 77 lFlgDGMg~~TvtAaRi~~g~~~-------~gee~~L~fe~FP~~GlSKTy~~d~qVpDSA~tATAylcGvK~n~gtiGv 149 (529)
T KOG4126|consen 77 LFLGDGMGVSTVTAARILKGQLN-------LGEETQLAFDRFPYTGLSKTYCSDKQVPDSACTATAYLCGVKTNYGTIGV 149 (529)
T ss_pred EEeeCCCChhhhHHhhhhccccc-------cCcCceeeeccCccccccccccccccCCchhHhHHHHhhccccccccccc
Confidence 69999999999999999999853 35788999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCcCCCCCCCCCchhhHHHHHHHcCCcEEEEeecccCCCCcceeeccccCCcccccccCCCCccccCCChhHHHH
Q psy17994 81 NSKISRKNCEGMKNPEYFTTSILKWAQDFGKSTGVVTTTRVTHASPAGTYAHTAERDWECDADIKKDPERIGNGCKDIAY 160 (268)
Q Consensus 81 ~~~~~~~~c~~~~~~~~~v~tIle~Ak~~Gk~tGiVTT~~ithATPAaf~AH~~~R~~e~d~~~~~~~~~~~~g~~dIA~ 160 (268)
++.+.+.+|..+.++++.|.||+||||++||+||||||+||||||||++|||+.+|+||||.+||++.+. .+|.|||+
T Consensus 150 ~a~v~~~~C~~~~~~~~~v~SIl~wAq~AGk~tG~VTTTRvThAsPag~yAH~anR~wE~D~~v~~~~~~--~~c~DiA~ 227 (529)
T KOG4126|consen 150 SAAVRFNDCGASANEGNHVISILEWAQLAGKSTGLVTTTRVTHASPAGAYAHVANRNWECDAEVPASAGG--EGCQDIAR 227 (529)
T ss_pred ccccccCCccccccccccchHHHHHHHHhCcccceEEEeeeccCCchhhhhccccccccccccccccccc--cchHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999988764 68999999
Q ss_pred HHhhcCCCCceEEEEcCCccCcccCCCCC-CCCCccccCCcccHHHHHHhcccCCCCCeEEecCHHHHhccCCCCCCCcE
Q psy17994 161 QLVKDDPGRRIKVIMGGGRAKFLPVSSKD-DEGNVGERSDGQDLIKEWLLDKTNRTKKAKFITTRQQLLELDPNKGTDYL 239 (268)
Q Consensus 161 Qli~~~~g~~~DVilGGG~~~F~p~~~~~-~~~~~g~R~Dg~dL~~~~~~~~~~~~~Gy~~v~~~~eL~~l~~~~~~~~l 239 (268)
||+++++|+.+|||||||+++|+|.+..+ +++..|+|.|||||+++|+.++ .. .|++||+||.||++++... +++|
T Consensus 228 QLi~~~~G~~l~Vi~GGGr~~f~~~~~~d~~~g~~g~R~DGrnLi~ew~~~k-~~-~~~~~V~nrkeL~~ln~s~-~~~L 304 (529)
T KOG4126|consen 228 QLIEQPVGKNLDVILGGGRKYFLPKGTNDSDYGVPGERLDGRNLLDEWRAKK-LH-VGGQYVWNRKELLNLNLSK-TDYL 304 (529)
T ss_pred HHhccCCCCceEEEecCCcccccCCCCCCccCCCcccccccHHHHHHHHhhh-cc-cCceEEechHHHhhccccc-ccee
Confidence 99999999999999999999999999888 5567789999999999999854 22 6999999999999997666 8999
Q ss_pred EEeecCCCCcccccC
Q psy17994 240 LGMNLFFFLSWASHS 254 (268)
Q Consensus 240 LGLf~~~~~~~~~~~ 254 (268)
||||+++||+|++++
T Consensus 305 lGLF~~~hm~y~~~r 319 (529)
T KOG4126|consen 305 LGLFANGHMSYHIDR 319 (529)
T ss_pred eEeccCCCccccccc
Confidence 999999999999995
No 2
>smart00098 alkPPc Alkaline phosphatase homologues.
Probab=100.00 E-value=1.2e-68 Score=515.91 Aligned_cols=226 Identities=49% Similarity=0.790 Sum_probs=208.2
Q ss_pred CeecCCCChHHHHHHHHHHhccCCCCCCCCCCCCcccccccCCceeeeeeeecCCccCCchhhhhhhhcccccCCCeeee
Q psy17994 1 MFLGDGMSLPTITAARIYKGQLGERGPDEPRGEQDHLSFENFPFTGMAKTYCVDQQTADSACTATAYLCGVKNNFGTIGV 80 (268)
Q Consensus 1 lfIgDGmg~~~vtaaR~~~~~~~~~~~~~~~g~~~~L~~d~~p~~G~~~T~s~d~~vtDSAaaaTA~atG~Kt~n~~igv 80 (268)
||||||||+++++|||+|+++..+ ..+++.+|+||+||+.|+++|||.|++|||||++||||+||+||+|++|||
T Consensus 5 l~IgDGMg~~~~taaR~~~~~~~~-----~~~~~~~l~~d~~p~~~l~~T~~~d~~vtDSAa~aTA~atG~KT~ng~Igv 79 (419)
T smart00098 5 LFIGDGMGVSTITAARILKGQAGG-----KLGEETLLAFDQFPTGALSKTYNPDYQVTDSAATATAYLCGVKTYNGAIGV 79 (419)
T ss_pred EEEeCCCCHHHHHHHHHHhcccCC-----CCccccccchhhcceeeeeccCCCCCCCCcchhhheehhhcccccCceeee
Confidence 799999999999999999987555 456778999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCcCCCCCCCCCchhhHHHHHHHcCCcEEEEeecccCCCCcceeeccccCCcccccccCCCCccccCCChhHHHH
Q psy17994 81 NSKISRKNCEGMKNPEYFTTSILKWAQDFGKSTGVVTTTRVTHASPAGTYAHTAERDWECDADIKKDPERIGNGCKDIAY 160 (268)
Q Consensus 81 ~~~~~~~~c~~~~~~~~~v~tIle~Ak~~Gk~tGiVTT~~ithATPAaf~AH~~~R~~e~d~~~~~~~~~~~~g~~dIA~ 160 (268)
+++. +++++||+|+||++||+||||||++||||||||||||+.+|+||++.+++.+.+ .++|.+||+
T Consensus 80 d~~~-----------~~~~~tIle~Ak~~G~~tGiVTT~~ithATPAafyAH~~~R~~e~~~~i~~~~~--~~~~~dIa~ 146 (419)
T smart00098 80 DAAT-----------GKEVPSVLEWAKKAGKSTGLVTTTRITHATPAATYAHVASRKWYNDADIPAEAL--ENGCGDIAR 146 (419)
T ss_pred cCCC-----------CCcchhHHHHHHHcCCcEEEEeCcccCCCcchhheeecccccccchhhhHHHHh--hcCCccHHH
Confidence 9871 578999999999999999999999999999999999999999998877765443 457999999
Q ss_pred HHhhcCCCCceEEEEcCCccCcccCCCCCCCCCccccCCcccHHHHHHhcccCCCCCeEEecCHHHHhccCCCCCCCcEE
Q psy17994 161 QLVKDDPGRRIKVIMGGGRAKFLPVSSKDDEGNVGERSDGQDLIKEWLLDKTNRTKKAKFITTRQQLLELDPNKGTDYLL 240 (268)
Q Consensus 161 Qli~~~~g~~~DVilGGG~~~F~p~~~~~~~~~~g~R~Dg~dL~~~~~~~~~~~~~Gy~~v~~~~eL~~l~~~~~~~~lL 240 (268)
||++. ++|||||||+++|+|+...++++..|+|.|+|||+++|++ +||+||+++++|.++++.. ++|||
T Consensus 147 Ql~~~----~~dVilGGG~~~F~p~~~~~~~~~~g~r~d~~nL~~~~~~------~gy~~v~~~~~l~~~~~~~-~~~ll 215 (419)
T smart00098 147 QLINN----RIDVLLGGGRSYFAPTGTADPEGQRGTRRDGRNLIEEWKA------AGYQYVWDRTELLAVGANK-VDPLL 215 (419)
T ss_pred HHhhc----CCcEEEeCCcccccccCCCccccccccccCCccHHHHHHH------cCCEEECCHHHHhcccccc-cceee
Confidence 99998 8999999999999999988877777889999999999998 8999999999999986555 79999
Q ss_pred EeecCCCCcccccCC
Q psy17994 241 GMNLFFFLSWASHSP 255 (268)
Q Consensus 241 GLf~~~~~~~~~~~~ 255 (268)
|||+.++|||++++.
T Consensus 216 GLF~~~~l~y~~dr~ 230 (419)
T smart00098 216 GLFADGDMPYEIDRD 230 (419)
T ss_pred eccCccCCCcccccC
Confidence 999999999999974
No 3
>PF00245 Alk_phosphatase: Alkaline phosphatase; InterPro: IPR001952 This entry represents alkaline phosphatases (3.1.3.1 from EC) (ALP), which act as non-specific phosphomonoesterases to hydrolyse phosphate esters, optimally at high pH. The reaction mechanism involves the attack of a serine alkoxide on a phosphorus of the substrate to form a transient covalent enzyme-phosphate complex, followed by the hydrolysis of the serine phosphate. Alkaline phosphatases are found in all kingdoms of life, with the exception of some plants. Alkaline phosphatases are metalloenzymes that exist as a dimer, each monomer binding metal ions. The metal ions they carry can differ, although zinc and magnesium are the most common. For example, Escherichia coli alkaline phosphatase (encoded by phoA) requires the presence of two zinc ions bound at the M1 and M2 metal sites, and one magnesium ion bound at the M3 site []. However, alkaline phosphatases from Thermotoga maritima and Bacillus subtilis require cobalt for maximal activity []. In mammals, there are four alkaline phosphatase isozymes: placental, placental-like (germ cell), intestinal and tissue-nonspecific (liver/bone/kidney). All four isozymes are anchored to the outer surface of the plasma membrane by a covalently attached glycosylphosphatidylinositol (GPI) anchor []. Human alkaline phosphatases have four metal binding sites: two for zinc, one for magnesium, and one for calcium ion. Placental alkaline phosphatase (ALPP or PLAP) is highly polymorphic, with at least three common alleles []. Its activity is down-regulated by a number of effectors such as l-phenylalanine, 5'-AMP, and by p-nitrophenyl-phosphonate (PNPPate) []. The placental-like isozyme (ALPPL or PLAP-like) is elevated in germ cell tumours. The intestinal isozyme (ALPI or IAP) has the ability to detoxify lipopolysaccharide and prevent bacterial invasion across the gut mucosal barrier []. The tissue-nonspecific isozyme (ALPL) is, and may play a role in skeletal mineralisation. Defects in ALPL are a cause of hypophosphatasia, including infantile-type (OMIM:241500), childhood-type (OMIM:241510) and adult-type (OMIM:146300). Hhypophosphatasia is an inherited metabolic bone disease characterised by defective skeletal mineralisation []. This entry also contains the related enzyme streptomycin-6-phosphate phosphatase (3.1.3.39 from EC) (encoded by strK) from Streptomyces species. This enzyme is involved in the synthesis of the antibiotic streptomycin, specifically cleaving both streptomycin-6-phosphate and, more slowly, streptomycin-3-phosphate [].; GO: 0016791 phosphatase activity, 0008152 metabolic process; PDB: 1AJD_B 1ALH_B 2ANH_B 3BDF_A 1ELZ_B 1ELX_B 1B8J_B 2GA3_A 1ANJ_B 1Y6V_B ....
Probab=100.00 E-value=2.7e-65 Score=493.63 Aligned_cols=227 Identities=43% Similarity=0.686 Sum_probs=179.3
Q ss_pred CeecCCCChHHHHHHHHHHhccCCCCCCCCCCCCcccccccCCceeeeeeeecCCccCCchhhhhhhhcccccCCCeeee
Q psy17994 1 MFLGDGMSLPTITAARIYKGQLGERGPDEPRGEQDHLSFENFPFTGMAKTYCVDQQTADSACTATAYLCGVKNNFGTIGV 80 (268)
Q Consensus 1 lfIgDGmg~~~vtaaR~~~~~~~~~~~~~~~g~~~~L~~d~~p~~G~~~T~s~d~~vtDSAaaaTA~atG~Kt~n~~igv 80 (268)
||||||||+++++|||+|+++..+ ..++ ..|+||+||+.|+++|||.|++|||||++||||+||+||+|++|||
T Consensus 6 ~~IgDGmg~~~~taar~~~~~~~~-----~~~~-~~l~~d~~~~~G~~~T~~~d~~vtDSAa~aTA~atG~Kt~n~~igv 79 (421)
T PF00245_consen 6 LFIGDGMGPSQVTAARIYKGGKNG-----RPGE-EFLAMDKFPYVGLVRTYSSDSQVTDSAAAATALATGVKTYNGAIGV 79 (421)
T ss_dssp EEEETT-SHHHHHHHHHHHHHHTT-----SCTT-TSCTGGGSSEEEEEE--ESSSSS--HHHHHHHHHHSS--BTT-BSB
T ss_pred EEEeCCCCHHHHHHHHHHHhhccC-----Cccc-ccchhhhhhccceeecccCCcccCccCCcceEEeeeeeeccCCeeE
Confidence 799999999999999999998765 2222 3399999999999999999999999999999999999999999999
Q ss_pred cCCCCCCcCCCCCCCCCchhhHHHHHHHcCCcEEEEeecccCCCCcceeeccccCCcccccccCCCCccccCCChhHHHH
Q psy17994 81 NSKISRKNCEGMKNPEYFTTSILKWAQDFGKSTGVVTTTRVTHASPAGTYAHTAERDWECDADIKKDPERIGNGCKDIAY 160 (268)
Q Consensus 81 ~~~~~~~~c~~~~~~~~~v~tIle~Ak~~Gk~tGiVTT~~ithATPAaf~AH~~~R~~e~d~~~~~~~~~~~~g~~dIA~ 160 (268)
+.+ +++++||+|+||++||+||||||++||||||||||||+.+|+||++...+.. .+..||.+|++
T Consensus 80 ~~~------------~~~~~ti~e~Ak~~G~~tGvVtT~~ithATPAaf~Ah~~~R~~~~~ia~~~~--~~~~g~~di~~ 145 (421)
T PF00245_consen 80 DPD------------GKPLETILELAKEAGKATGVVTTTRITHATPAAFYAHVPDRNWYNDIAEPDE--QQLAGCPDIAQ 145 (421)
T ss_dssp ETT------------SCB---HHHHHHHTT-EEEEEEEEETTSHHHHTTT--BSSTT-HHHHHHCTC--HHCTTS--HHH
T ss_pred CCC------------CCcchhHHHHHHHhCCeeeeeecccccCCccceEEEecccccccchhhcchh--hhhcCCcchHH
Confidence 976 6899999999999999999999999999999999999999999976443221 13578999999
Q ss_pred HHhhcCCCCceEEEEcCCccCcccCCCCCCCCCccccCCcccHHHHHHhcccCCCCCeEEecCHHHHhccCCCCCCCcEE
Q psy17994 161 QLVKDDPGRRIKVIMGGGRAKFLPVSSKDDEGNVGERSDGQDLIKEWLLDKTNRTKKAKFITTRQQLLELDPNKGTDYLL 240 (268)
Q Consensus 161 Qli~~~~g~~~DVilGGG~~~F~p~~~~~~~~~~g~R~Dg~dL~~~~~~~~~~~~~Gy~~v~~~~eL~~l~~~~~~~~lL 240 (268)
|+++.. +++|||||||+++|+|+...+..+..++|+|++||+++|++ +||+||++++||+++......+|||
T Consensus 146 q~~~~~--~~~Dv~lGGG~~~f~p~~~~~~~~~~~~r~d~~~l~~~~~~------~gy~~v~~~~el~~~~~~~~~~~~l 217 (421)
T PF00245_consen 146 QLLESG--KNVDVILGGGRRYFLPKGEPDEEGQKGKRKDGRNLIEEAKA------KGYTVVETRAELDALDGGKVTDPLL 217 (421)
T ss_dssp HHHHCT--GG-SEEEEE-GGGGSBTTCSCTCGGC-SBTSTSBHHHHHHH------TTEEEECSHHHHHHHHSSTTSSEEE
T ss_pred HhhcCC--cccceEecCchhhccccCCCCccccCcccccCCCchhhhcc------cCcEEECCHHHHhhcccccccceee
Confidence 999982 35999999999999999887766667899999999999998 8999999999999986543368999
Q ss_pred EeecCCCCcccccCC
Q psy17994 241 GMNLFFFLSWASHSP 255 (268)
Q Consensus 241 GLf~~~~~~~~~~~~ 255 (268)
|||+.++|+|++++.
T Consensus 218 Glf~~~~~~~~~~~~ 232 (421)
T PF00245_consen 218 GLFADSHMPYEIDRD 232 (421)
T ss_dssp EEESSSS---HHCCC
T ss_pred ccccccccccccccC
Confidence 999999999999643
No 4
>PRK10518 alkaline phosphatase; Provisional
Probab=100.00 E-value=5.7e-63 Score=481.42 Aligned_cols=215 Identities=27% Similarity=0.376 Sum_probs=188.8
Q ss_pred CeecCCCChHHHHHHHHHHhccCCCCCCCCCCCCcccccccCCceeeeeeeecCCc------cCCchhhhhhhhcccccC
Q psy17994 1 MFLGDGMSLPTITAARIYKGQLGERGPDEPRGEQDHLSFENFPFTGMAKTYCVDQQ------TADSACTATAYLCGVKNN 74 (268)
Q Consensus 1 lfIgDGmg~~~vtaaR~~~~~~~~~~~~~~~g~~~~L~~d~~p~~G~~~T~s~d~~------vtDSAaaaTA~atG~Kt~ 74 (268)
||||||||++++||||+|+++..| . .+.||+||+.|+++|||.|++ |||||++||||+||+||+
T Consensus 74 lfIGDGMg~s~itaaR~~~~g~~G--------~--~~~~d~lp~~g~~~Tys~d~~~~~~~~VtDSAatATA~aTGvKT~ 143 (476)
T PRK10518 74 LLIGDGMGDSEITAARNYAEGAGG--------F--FKGIDALPLTGQYTHYALNKKTGKPDYVTDSAASATAWSTGVKTY 143 (476)
T ss_pred EEEeCCCCHHHHHHHHHHhcCCCC--------c--cccccccccceeeeeccCCccccCcccccCchHhhHHHhhccccc
Confidence 799999999999999999987433 1 236999999999999999976 999999999999999999
Q ss_pred CCeeeecCCCCCCcCCCCCCCCCchhhHHHHHHHcCCcEEEEeecccCCCCcceeeccccCCcccccccCCCCcccc---
Q psy17994 75 FGTIGVNSKISRKNCEGMKNPEYFTTSILKWAQDFGKSTGVVTTTRVTHASPAGTYAHTAERDWECDADIKKDPERI--- 151 (268)
Q Consensus 75 n~~igv~~~~~~~~c~~~~~~~~~v~tIle~Ak~~Gk~tGiVTT~~ithATPAaf~AH~~~R~~e~d~~~~~~~~~~--- 151 (268)
|++|||+++ +++++||+|+||++||+||||||++||||||||||||+.+|+||++.. +.+.|..
T Consensus 144 ng~IgVd~~------------g~~v~TIlE~Ak~~G~aTGiVTT~~ithATPAafyAH~~~R~~~~~~~-~~~~c~~~~~ 210 (476)
T PRK10518 144 NGALGVDIH------------GKDHPTLLELAKAAGKATGNVSTAELQDATPAALVAHVTSRKCYGPEE-TSEKCPGNAL 210 (476)
T ss_pred CCeEeECCC------------CCcchhHHHHHHHcCCcEEEEeccccCCCcchhhhhccchhhccCccc-cccccccccc
Confidence 999999987 679999999999999999999999999999999999999999998655 3344431
Q ss_pred -CCChhHHHHHHhhcCCCCceEEEEcCCccCcccCCCCCCCCCccccCCcccHHHHHHhcccCCCCCeEEecCHHHHhcc
Q psy17994 152 -GNGCKDIAYQLVKDDPGRRIKVIMGGGRAKFLPVSSKDDEGNVGERSDGQDLIKEWLLDKTNRTKKAKFITTRQQLLEL 230 (268)
Q Consensus 152 -~~g~~dIA~Qli~~~~g~~~DVilGGG~~~F~p~~~~~~~~~~g~R~Dg~dL~~~~~~~~~~~~~Gy~~v~~~~eL~~l 230 (268)
..|+.+||+|||+. ++|||||||+++|+|+... .+.||+||+++|++ +||+||+++++|+++
T Consensus 211 ~~gg~~~IA~Ql~~~----~~DVilGGG~~~F~~~~~~-------~~~~g~~L~~~~~~------~Gy~~V~~~~~l~a~ 273 (476)
T PRK10518 211 ENGGRGSITEQLLNT----RADVTLGGGAKTFAETATA-------GEWKGKTLREQAKA------RGYQLVEDADSLNAV 273 (476)
T ss_pred cccchhHHHHHHhcc----CCeEEEeCChhhccccCCC-------CCcCCccHHHHHHh------cCCEEECCHHHHhcc
Confidence 23456999999998 8999999999999996532 24689999999998 799999999999998
Q ss_pred CCCCCCCcEEEeecCCCCcccccCC
Q psy17994 231 DPNKGTDYLLGMNLFFFLSWASHSP 255 (268)
Q Consensus 231 ~~~~~~~~lLGLf~~~~~~~~~~~~ 255 (268)
++....+||||||+.++|||+++++
T Consensus 274 ~~~~~~~~lLGLF~~~~m~y~~d~~ 298 (476)
T PRK10518 274 TEANQDKPLLGLFADGNMPVRWLGP 298 (476)
T ss_pred ccccCCCeEEEecccCCCcchhhcc
Confidence 7543268999999999999999864
No 5
>cd00016 alkPPc Alkaline phosphatase homologues; alkaline phosphatases are non-specific phosphomonoesterases that catalyze the hydrolysis reaction via a phosphoseryl intermediate to produce inorganic phosphate and the corresponding alcohol, optimally at high pH. Alkaline phosphatase exists as a dimer, each monomer binding 2 zinc atoms and one magnesium atom, which are essential for enzymatic activity.
Probab=100.00 E-value=2.2e-62 Score=468.63 Aligned_cols=214 Identities=51% Similarity=0.840 Sum_probs=196.1
Q ss_pred CeecCCCChHHHHHHHHHHhccCCCCCCCCCCCCcccccccCCceeeeeeeecCCccCCchhhhhhhhcccccCCCeeee
Q psy17994 1 MFLGDGMSLPTITAARIYKGQLGERGPDEPRGEQDHLSFENFPFTGMAKTYCVDQQTADSACTATAYLCGVKNNFGTIGV 80 (268)
Q Consensus 1 lfIgDGmg~~~vtaaR~~~~~~~~~~~~~~~g~~~~L~~d~~p~~G~~~T~s~d~~vtDSAaaaTA~atG~Kt~n~~igv 80 (268)
||||||||++++++||+|+++..+ . +...|.||+||+.|+++|||.|++|||||++||||+||+||+|++|||
T Consensus 11 l~igDGmg~~~~taar~~~~~~~~-----~--~~~~l~~d~~~~~G~~~T~~~~~~vtDSAa~aTA~~tG~Kt~~~~igv 83 (384)
T cd00016 11 LFIGDGMGVSTITAARIYKGQENG-----A--EEGKLLFDDFPLTGLSKTYSVDSQVTDSAATATAYATGVKTNNGAIGV 83 (384)
T ss_pred EEEeCCCCHHHHHHHHHHhcCccc-----c--cccccchhccchhheeecccCCCCccccHHHHhHhhhcccccCceeee
Confidence 699999999999999999988654 1 567899999999999999999999999999999999999999999999
Q ss_pred cCCCCCCcCCCCCCCCCchhhHHHHHHHcCCcEEEEeecccCCCCcceeeccccCCcccccccCCCCccccCCChhHHHH
Q psy17994 81 NSKISRKNCEGMKNPEYFTTSILKWAQDFGKSTGVVTTTRVTHASPAGTYAHTAERDWECDADIKKDPERIGNGCKDIAY 160 (268)
Q Consensus 81 ~~~~~~~~c~~~~~~~~~v~tIle~Ak~~Gk~tGiVTT~~ithATPAaf~AH~~~R~~e~d~~~~~~~~~~~~g~~dIA~ 160 (268)
+++..+.+ .+..+++.||+|+||++||+||||||++||||||||||||+++|+||. +||+
T Consensus 84 ~~~~~~~~----~~~~~~~~ti~e~ak~~G~~tGiVtT~~ithATPAa~~AH~~~R~~~~----------------~Ia~ 143 (384)
T cd00016 84 SADVSRDD----TDNGKPVTSVLEWAKAAGKATGIVTTTRVTHATPAAFYAHVPDRNWEE----------------DIAE 143 (384)
T ss_pred cCCCCccc----ccCCcchhhHHHHHHHcCCCEEEEeeeecCCCcchhhhccccccCCHH----------------HHHH
Confidence 99876432 234689999999999999999999999999999999999999999873 8999
Q ss_pred HHhhcCCCCceEEEEcCCccCcccCCCCCCCCCccccCCcccHHHHHHhcccCCCCCeEEecCHHHHhccCCCCCCCcEE
Q psy17994 161 QLVKDDPGRRIKVIMGGGRAKFLPVSSKDDEGNVGERSDGQDLIKEWLLDKTNRTKKAKFITTRQQLLELDPNKGTDYLL 240 (268)
Q Consensus 161 Qli~~~~g~~~DVilGGG~~~F~p~~~~~~~~~~g~R~Dg~dL~~~~~~~~~~~~~Gy~~v~~~~eL~~l~~~~~~~~lL 240 (268)
|||++.+|+++|||||||+++|+|+.+. |+|.|++||+++|++ +||+||++++||+++++ . .+|||
T Consensus 144 q~~~~~~g~~~dv~~GGG~~~f~~~~~~------g~r~d~~~l~~~~~~------~gy~~v~~~~~l~~~~~-~-~~k~l 209 (384)
T cd00016 144 QLIEEAPGRGIDVLLGGGRRYFLPSTTG------GGRKDGRDLIAEWKA------KGYQYVWNRTELLAVNV-A-TDKLL 209 (384)
T ss_pred HHhhccCCCCCeEEEeCChhhccccCCc------cccccchHHHHHHHH------cCCEEECCHHHHhhccc-c-CCcEE
Confidence 9999988889999999999999997643 679999999999998 89999999999999976 3 78999
Q ss_pred EeecCCCCcccccCC
Q psy17994 241 GMNLFFFLSWASHSP 255 (268)
Q Consensus 241 GLf~~~~~~~~~~~~ 255 (268)
|||+.++|+|.++++
T Consensus 210 glF~~~~l~~~~~r~ 224 (384)
T cd00016 210 GLFADSHLPYELDRD 224 (384)
T ss_pred EEeCCCCCChhhccC
Confidence 999999999999973
No 6
>COG1785 PhoA Alkaline phosphatase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.3e-57 Score=436.50 Aligned_cols=209 Identities=38% Similarity=0.503 Sum_probs=183.2
Q ss_pred CeecCCCChHHHHHHHHHHhccCCCCCCCCCCCCcccccccCCceeeeeeeecCCccCCchhhhhhhhcccccCCCeeee
Q psy17994 1 MFLGDGMSLPTITAARIYKGQLGERGPDEPRGEQDHLSFENFPFTGMAKTYCVDQQTADSACTATAYLCGVKNNFGTIGV 80 (268)
Q Consensus 1 lfIgDGmg~~~vtaaR~~~~~~~~~~~~~~~g~~~~L~~d~~p~~G~~~T~s~d~~vtDSAaaaTA~atG~Kt~n~~igv 80 (268)
||||||||+++++++|+|+++..+. . ....+.++.- +.|.++|++.++.|||||++||||+||+||+||+|||
T Consensus 64 ~~IgDGMG~s~vtaaR~~~~~~~~~-----~-~~~~~~~~~~-~~g~~~t~s~~~~vTDSAAaaTA~atGvKTyNgaigv 136 (482)
T COG1785 64 LLIGDGMGPSTVTAARSYKGGPNGP-----F-KGIDTLPDTG-LIGTYSTHSSDSNVTDSAAAATAFATGVKTYNGAIGV 136 (482)
T ss_pred EEecCCCChHHHHHHHHhccCCCCc-----c-cccccccccc-ccceeeccCCCCcccchhhhhhhhhhceeccCccccc
Confidence 6999999999999999999885441 1 1112445554 7999999999999999999999999999999999999
Q ss_pred cCCCCCCcCCCCCCCCCchhhHHHHHHHcCCcEEEEeecccCCCCcceeeccccCCcccccccCCCCccccCCChhHHHH
Q psy17994 81 NSKISRKNCEGMKNPEYFTTSILKWAQDFGKSTGVVTTTRVTHASPAGTYAHTAERDWECDADIKKDPERIGNGCKDIAY 160 (268)
Q Consensus 81 ~~~~~~~~c~~~~~~~~~v~tIle~Ak~~Gk~tGiVTT~~ithATPAaf~AH~~~R~~e~d~~~~~~~~~~~~g~~dIA~ 160 (268)
++. +++++||||+||++||+||||||+||||||||||+||+.+|+||+ +||+
T Consensus 137 ~~~------------~~~~~TiLE~Ak~~GkaTGlVtTtriThATPAAf~AHv~~R~~~~----------------~ia~ 188 (482)
T COG1785 137 DPN------------GKPLKTILELAKEAGKATGLVTTTRITHATPAAFAAHVTSRDDED----------------EIAT 188 (482)
T ss_pred CCC------------CcccchHHHHHHHhCcccceEEeeeccccChHHHHHhcccccchh----------------HHHH
Confidence 997 789999999999999999999999999999999999999999653 7999
Q ss_pred HHhhcC-CCC--ceEEEEcCCccCcccCCCCCCCCCccccCCcccHHHHHHhcccCCCCCeEEecCHHHHhccCCCCCCC
Q psy17994 161 QLVKDD-PGR--RIKVIMGGGRAKFLPVSSKDDEGNVGERSDGQDLIKEWLLDKTNRTKKAKFITTRQQLLELDPNKGTD 237 (268)
Q Consensus 161 Qli~~~-~g~--~~DVilGGG~~~F~p~~~~~~~~~~g~R~Dg~dL~~~~~~~~~~~~~Gy~~v~~~~eL~~l~~~~~~~ 237 (268)
|++... .++ ++||+||||+++|.|+... +++|.|+++|++++++ .||+||+|++||+++.+. .+
T Consensus 189 ~~~~~~~~~~~~~~DVllGGG~~~F~p~~~~-----g~~r~d~~~l~~~~~~------~GY~~V~~~~el~a~~~~--~~ 255 (482)
T COG1785 189 QQICPGNAGRNDKVDVLLGGGRKYFLPKATA-----GGRRDDGRDLIEEAKA------AGYQYVETRAELNAVSNQ--DD 255 (482)
T ss_pred HhhccccccccCCCCEEecCchhhccccccc-----cccccCcHHHHHHHHh------CCcEEeccHHHHHhhhcc--CC
Confidence 999863 233 5999999999999998633 3679999999999998 799999999999999633 59
Q ss_pred cEEEeecCCCCcccccCCCC
Q psy17994 238 YLLGMNLFFFLSWASHSPSG 257 (268)
Q Consensus 238 ~lLGLf~~~~~~~~~~~~~~ 257 (268)
||||||+.+++++++|++..
T Consensus 256 klLGLFa~~~~~~~~DR~~~ 275 (482)
T COG1785 256 KLLGLFADGHLPPNLDRDRD 275 (482)
T ss_pred ceEEeccCCCCCcccccCcc
Confidence 99999999999999997643
No 7
>PF01663 Phosphodiest: Type I phosphodiesterase / nucleotide pyrophosphatase; InterPro: IPR002591 This family consists of phosphodiesterases, including human plasma-cell membrane glycoprotein PC-1 / alkaline phosphodiesterase I / nucleotide pyrophosphatase (nppase). These enzymes catalyse the cleavage of phosphodiester and phosphosulphate bonds in NAD, deoxynucleotides and nucleotide sugars []. Another member of this family is ATX an autotaxin, tumor cell motility-stimulating protein which exhibits type I phosphodiesterases activity []. The alignment encompasses the active site [, ]. Also present within this family is 60 kDa Ca2+-ATPase from Myroides odoratus []. This signature also hits a number of ethanolamine phosphate transferase involved in glycosylphosphatidylinositol-anchor biosynthesis.; GO: 0003824 catalytic activity; PDB: 2XRG_A 2XR9_A 3T02_A 3T01_A 3SZZ_A 3SZY_A 3T00_A 3NKM_A 3NKN_A 3NKR_A ....
Probab=53.00 E-value=8.7 Score=35.20 Aligned_cols=98 Identities=16% Similarity=0.137 Sum_probs=57.9
Q ss_pred CeecCCCChHHHHHHHHHHhccCCCCCCCCCCCCcccccccCCceeeeeeeecCCccCCchhhhhhhhcccccC-CCeee
Q psy17994 1 MFLGDGMSLPTITAARIYKGQLGERGPDEPRGEQDHLSFENFPFTGMAKTYCVDQQTADSACTATAYLCGVKNN-FGTIG 79 (268)
Q Consensus 1 lfIgDGmg~~~vtaaR~~~~~~~~~~~~~~~g~~~~L~~d~~p~~G~~~T~s~d~~vtDSAaaaTA~atG~Kt~-n~~ig 79 (268)
|++-|||+...+.... +. .-+|.+|-..|...+.....+.+.++++-++++||.... .|.+|
T Consensus 3 ~i~iDGl~~~~l~~~~---~~--------------~p~l~~l~~~G~~~~~~~s~~Ps~T~~~~~si~TG~~P~~HGi~~ 65 (365)
T PF01663_consen 3 VIGIDGLRPDLLDRYI---GN--------------LPNLKRLAEEGVYGPNLRSVFPSTTAPNWASILTGAYPEEHGIIG 65 (365)
T ss_dssp EEEETT-BHHHHHHHH---TS--------------SHHHHHHHHHSEEECEEE-SSSBSHHHHHHHHHHSS-HHHHS--S
T ss_pred EEEEeCCCHHHHHhHh---cc--------------CHHHHHHHHCCCCCCCceecCCCCcccchhhhhcCccccccCCcc
Confidence 4677999999886654 21 114556656777766666778899999999999998764 35555
Q ss_pred e---cCCCCC----CcCCCCCCCCCchhhHHHHHHHcCCcEEEE
Q psy17994 80 V---NSKISR----KNCEGMKNPEYFTTSILKWAQDFGKSTGVV 116 (268)
Q Consensus 80 v---~~~~~~----~~c~~~~~~~~~v~tIle~Ak~~Gk~tGiV 116 (268)
- ++.... ..+.... ..-...+|.+.++++|+++.++
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~g~~~a~~ 108 (365)
T PF01663_consen 66 NYWYDPKTGKESTFWDELGDS-GDVDSPPIWESLAKAGKKVAVF 108 (365)
T ss_dssp SCEEETTTTEEECEESSSSGG-GCCCCHEHHHHHHHTT-EEEEC
T ss_pred ccccCcccccccccccccccc-ccccchhHHHHHHHcCCceeee
Confidence 2 121110 0110000 0012248999999999999887
No 8
>PRK13759 arylsulfatase; Provisional
Probab=39.48 E-value=41 Score=33.41 Aligned_cols=93 Identities=13% Similarity=0.149 Sum_probs=56.8
Q ss_pred CeecCCCChHHHHHHHHHHhccCCCCCCCCCCCCcccccccCCceeeeeeeecCCccCCchhhhhhhhcccccCC-Ceee
Q psy17994 1 MFLGDGMSLPTITAARIYKGQLGERGPDEPRGEQDHLSFENFPFTGMAKTYCVDQQTADSACTATAYLCGVKNNF-GTIG 79 (268)
Q Consensus 1 lfIgDGmg~~~vtaaR~~~~~~~~~~~~~~~g~~~~L~~d~~p~~G~~~T~s~d~~vtDSAaaaTA~atG~Kt~n-~~ig 79 (268)
|++.|-|+...+.+. +.. ....=+||+|--.|+.-+...-. .+=+.++=++|+||.=... +.++
T Consensus 11 ~I~~Ddlr~d~l~~~----G~~----------~~~TPnld~La~~G~~F~nay~~-~p~c~psr~sl~TG~yp~~~g~~~ 75 (485)
T PRK13759 11 LIMVDQMRGDCLGCN----GNK----------AVETPNLDMLASEGYNFENAYSA-VPSCTPARAALLTGLSQWHHGRVG 75 (485)
T ss_pred EEEECCCCHHHHHhc----CCC----------cCCCccHHHHHhcCceeeceecC-CCcchhhHHHHHhcCChhhcCccc
Confidence 467888888777653 210 01122788886677766644311 1233577899999987764 3333
Q ss_pred ecCCCCCCcCCCCCCCCCchhhHHHHHHHcCCcEEEEee
Q psy17994 80 VNSKISRKNCEGMKNPEYFTTSILKWAQDFGKSTGVVTT 118 (268)
Q Consensus 80 v~~~~~~~~c~~~~~~~~~v~tIle~Ak~~Gk~tGiVTT 118 (268)
.... .. .....|+.+.++++||.|+.|.-
T Consensus 76 ~~~~-------~~---~~~~~tl~~~l~~~GY~T~~~GK 104 (485)
T PRK13759 76 YGDV-------VP---WNYKNTLPQEFRDAGYYTQCIGK 104 (485)
T ss_pred cccc-------cc---ccccchHHHHHHHcCCeeEEecc
Confidence 2110 00 11346899999999999999964
No 9
>PF14502 HTH_41: Helix-turn-helix domain
Probab=34.79 E-value=12 Score=26.22 Aligned_cols=23 Identities=22% Similarity=0.419 Sum_probs=20.2
Q ss_pred CCchhhHHHHHHHcCCcEEEEee
Q psy17994 96 EYFTTSILKWAQDFGKSTGVVTT 118 (268)
Q Consensus 96 ~~~v~tIle~Ak~~Gk~tGiVTT 118 (268)
+.++++|-|++++-+-+.|.|.+
T Consensus 3 GdRi~tI~e~~~~~~vs~GtiQ~ 25 (48)
T PF14502_consen 3 GDRIPTISEYSEKFGVSRGTIQN 25 (48)
T ss_pred CcccCCHHHHHHHhCcchhHHHH
Confidence 77999999999999999887754
No 10
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=33.82 E-value=16 Score=31.19 Aligned_cols=88 Identities=16% Similarity=0.195 Sum_probs=42.8
Q ss_pred hhhhhhcccccCCCeeeecCCCCCCcCCCCCCCCCchhhHHHHHHHcCCcEEEEeecccCCCCcceeec-----cccCCc
Q psy17994 63 TATAYLCGVKNNFGTIGVNSKISRKNCEGMKNPEYFTTSILKWAQDFGKSTGVVTTTRVTHASPAGTYA-----HTAERD 137 (268)
Q Consensus 63 aaTA~atG~Kt~n~~igv~~~~~~~~c~~~~~~~~~v~tIle~Ak~~Gk~tGiVTT~~ithATPAaf~A-----H~~~R~ 137 (268)
++||..-=..+.--.|-+... +.-+-.-+..|+..+.++|+|.--.+..- ...+. +...+-
T Consensus 42 G~ta~~lr~~~~iPVV~I~~s------------~~Dil~al~~a~~~~~~Iavv~~~~~~~~--~~~~~~ll~~~i~~~~ 107 (176)
T PF06506_consen 42 GGTAELLRKHVSIPVVEIPIS------------GFDILRALAKAKKYGPKIAVVGYPNIIPG--LESIEELLGVDIKIYP 107 (176)
T ss_dssp HHHHHHHHCC-SS-EEEE---------------HHHHHHHHHHCCCCTSEEEEEEESS-SCC--HHHHHHHHT-EEEEEE
T ss_pred CHHHHHHHHhCCCCEEEECCC------------HhHHHHHHHHHHhcCCcEEEEecccccHH--HHHHHHHhCCceEEEE
Confidence 355555544445555555554 23344555567778999999988766643 11111 111111
Q ss_pred ccccccCCCCccccCCChhHHHHHHhhcCCCCceEEEEcCCc
Q psy17994 138 WECDADIKKDPERIGNGCKDIAYQLVKDDPGRRIKVIMGGGR 179 (268)
Q Consensus 138 ~e~d~~~~~~~~~~~~g~~dIA~Qli~~~~g~~~DVilGGG~ 179 (268)
+.+.. ....+-+|+... ++|||+||+.
T Consensus 108 ~~~~~-----------e~~~~i~~~~~~----G~~viVGg~~ 134 (176)
T PF06506_consen 108 YDSEE-----------EIEAAIKQAKAE----GVDVIVGGGV 134 (176)
T ss_dssp ESSHH-----------HHHHHHHHHHHT----T--EEEESHH
T ss_pred ECCHH-----------HHHHHHHHHHHc----CCcEEECCHH
Confidence 11111 134555566566 8999999964
No 11
>COG3119 AslA Arylsulfatase A and related enzymes [Inorganic ion transport and metabolism]
Probab=32.04 E-value=51 Score=32.68 Aligned_cols=64 Identities=17% Similarity=0.129 Sum_probs=44.4
Q ss_pred chhhhhhhhcccccCC-CeeeecCCCCCCcCCCCCCCCCchhhHHHHHHHcCCcEEEEeecccCCC--Ccce
Q psy17994 60 SACTATAYLCGVKNNF-GTIGVNSKISRKNCEGMKNPEYFTTSILKWAQDFGKSTGVVTTTRVTHA--SPAG 128 (268)
Q Consensus 60 SAaaaTA~atG~Kt~n-~~igv~~~~~~~~c~~~~~~~~~v~tIle~Ak~~Gk~tGiVTT~~ithA--TPAa 128 (268)
|+++=++++||..... |..++... ..|.... .....|+.|++|++||.|+.+----++.. +|+.
T Consensus 54 c~PsRa~l~TGr~~~~~G~~~~~~~---~g~~~~l--~~~~~Tla~~Lk~~GY~Ta~~GKwHl~~~~~~p~~ 120 (475)
T COG3119 54 CGPSRAALLTGRYPFRTGVGGNAEP---PGYPGGL--PDEVPTLAELLKEAGYYTALFGKWHLGEKDEDPAG 120 (475)
T ss_pred CchhhhHHhhCCCccccccccccCC---CCccccc--CcccchHHHHHHHcCChhhhcccccCCCCccCccc
Confidence 4456789999988764 44433321 1122111 24678999999999999999998888877 7765
No 12
>PRK06769 hypothetical protein; Validated
Probab=26.66 E-value=63 Score=27.30 Aligned_cols=24 Identities=17% Similarity=-0.043 Sum_probs=20.9
Q ss_pred CchhhHHHHHHHcCCcEEEEeecc
Q psy17994 97 YFTTSILKWAQDFGKSTGVVTTTR 120 (268)
Q Consensus 97 ~~v~tIle~Ak~~Gk~tGiVTT~~ 120 (268)
+.+..+|++++++|+.++|||+..
T Consensus 31 pgv~e~L~~Lk~~G~~l~I~Tn~~ 54 (173)
T PRK06769 31 PFTKASLQKLKANHIKIFSFTNQP 54 (173)
T ss_pred CCHHHHHHHHHHCCCEEEEEECCc
Confidence 467889999999999999999864
No 13
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=25.86 E-value=66 Score=27.20 Aligned_cols=22 Identities=18% Similarity=0.051 Sum_probs=19.5
Q ss_pred chhhHHHHHHHcCCcEEEEeec
Q psy17994 98 FTTSILKWAQDFGKSTGVVTTT 119 (268)
Q Consensus 98 ~v~tIle~Ak~~Gk~tGiVTT~ 119 (268)
.+..+|+.++++|+.++|||+.
T Consensus 46 gv~e~L~~Lk~~G~~l~I~TN~ 67 (166)
T TIGR01664 46 EIPAKLQELDDEGYKIVIFTNQ 67 (166)
T ss_pred CHHHHHHHHHHCCCEEEEEeCC
Confidence 4778899999999999999984
No 14
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=24.80 E-value=72 Score=25.99 Aligned_cols=26 Identities=15% Similarity=0.098 Sum_probs=21.6
Q ss_pred CchhhHHHHHHHcCCcEEEEeecccC
Q psy17994 97 YFTTSILKWAQDFGKSTGVVTTTRVT 122 (268)
Q Consensus 97 ~~v~tIle~Ak~~Gk~tGiVTT~~it 122 (268)
+.+..+++.++++|++++|||++...
T Consensus 88 ~g~~~~l~~l~~~g~~~~i~Tn~~~~ 113 (183)
T TIGR01509 88 PGVEPLLEALRARGKKLALLTNSPRD 113 (183)
T ss_pred cCHHHHHHHHHHCCCeEEEEeCCchH
Confidence 45778899999999999999987643
No 15
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=24.68 E-value=73 Score=26.73 Aligned_cols=24 Identities=17% Similarity=0.070 Sum_probs=21.1
Q ss_pred CchhhHHHHHHHcCCcEEEEeecc
Q psy17994 97 YFTTSILKWAQDFGKSTGVVTTTR 120 (268)
Q Consensus 97 ~~v~tIle~Ak~~Gk~tGiVTT~~ 120 (268)
+.+..++++.+++|++++|||+..
T Consensus 29 pgv~e~L~~Lk~~G~~l~i~TN~~ 52 (176)
T TIGR00213 29 DGVIDALRELKKMGYALVLVTNQS 52 (176)
T ss_pred CCHHHHHHHHHHCCCEEEEEeCCc
Confidence 457889999999999999999876
No 16
>PRK11587 putative phosphatase; Provisional
Probab=24.58 E-value=68 Score=27.72 Aligned_cols=24 Identities=17% Similarity=0.178 Sum_probs=20.6
Q ss_pred CchhhHHHHHHHcCCcEEEEeecc
Q psy17994 97 YFTTSILKWAQDFGKSTGVVTTTR 120 (268)
Q Consensus 97 ~~v~tIle~Ak~~Gk~tGiVTT~~ 120 (268)
+.+..+|+..+++|++++|||+..
T Consensus 86 pg~~e~L~~L~~~g~~~~ivTn~~ 109 (218)
T PRK11587 86 PGAIALLNHLNKLGIPWAIVTSGS 109 (218)
T ss_pred cCHHHHHHHHHHcCCcEEEEcCCC
Confidence 457889999999999999999853
No 17
>TIGR03417 chol_sulfatase choline-sulfatase.
Probab=23.99 E-value=54 Score=32.68 Aligned_cols=70 Identities=7% Similarity=0.040 Sum_probs=43.1
Q ss_pred ccccCCceeeeeeeecCCccCCchhhhhhhhcccccCCCeeeecCCCCCCcCCCCCCCCCchhhHHHHHHHcCCcEEEEe
Q psy17994 38 SFENFPFTGMAKTYCVDQQTADSACTATAYLCGVKNNFGTIGVNSKISRKNCEGMKNPEYFTTSILKWAQDFGKSTGVVT 117 (268)
Q Consensus 38 ~~d~~p~~G~~~T~s~d~~vtDSAaaaTA~atG~Kt~n~~igv~~~~~~~~c~~~~~~~~~v~tIle~Ak~~Gk~tGiVT 117 (268)
+||+|--.|+.-+.+.- ..+=..++=++|+||.=... .|+..... .+ .....||.|++|++||.|+.|-
T Consensus 31 nLD~LA~eGv~F~nay~-~~p~C~PSRaSllTG~yp~~--~G~~~~~~------~l--~~~~~tl~~~L~~aGY~T~~~G 99 (500)
T TIGR03417 31 NLKRLAARSVVFDNAYC-ASPLCAPSRASFMSGQLPSR--TGAYDNAA------EF--PSDIPTYAHYLRRAGYRTALSG 99 (500)
T ss_pred cHHHHHHhCceeccccc-CCCccHHHHHHHHHCCCHHh--cCcccchh------hc--CcCCCCHHHHHHHCCCeEEEec
Confidence 67777666666554431 12234566899999964432 23321111 01 2346789999999999999985
Q ss_pred e
Q psy17994 118 T 118 (268)
Q Consensus 118 T 118 (268)
-
T Consensus 100 K 100 (500)
T TIGR03417 100 K 100 (500)
T ss_pred c
Confidence 4
No 18
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=23.48 E-value=79 Score=26.55 Aligned_cols=24 Identities=13% Similarity=-0.011 Sum_probs=20.5
Q ss_pred CchhhHHHHHHHcCCcEEEEeecc
Q psy17994 97 YFTTSILKWAQDFGKSTGVVTTTR 120 (268)
Q Consensus 97 ~~v~tIle~Ak~~Gk~tGiVTT~~ 120 (268)
+.+..++++++++|+.++|||+..
T Consensus 32 pgv~e~L~~Lk~~g~~l~I~Tn~~ 55 (181)
T PRK08942 32 PGSIEAIARLKQAGYRVVVATNQS 55 (181)
T ss_pred CCHHHHHHHHHHCCCEEEEEeCCc
Confidence 456788999999999999999865
No 19
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=22.69 E-value=83 Score=26.48 Aligned_cols=24 Identities=8% Similarity=0.018 Sum_probs=20.4
Q ss_pred CchhhHHHHHHHcCCcEEEEeecc
Q psy17994 97 YFTTSILKWAQDFGKSTGVVTTTR 120 (268)
Q Consensus 97 ~~v~tIle~Ak~~Gk~tGiVTT~~ 120 (268)
+.+..+++.++++|+.++|+|++.
T Consensus 95 ~~~~~~L~~L~~~g~~~~i~Sn~~ 118 (198)
T TIGR01428 95 PDVPAGLRALKERGYRLAILSNGS 118 (198)
T ss_pred CCHHHHHHHHHHCCCeEEEEeCCC
Confidence 456788999999999999999865
No 20
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=22.36 E-value=84 Score=26.79 Aligned_cols=24 Identities=17% Similarity=0.070 Sum_probs=20.8
Q ss_pred CchhhHHHHHHHcCCcEEEEeecc
Q psy17994 97 YFTTSILKWAQDFGKSTGVVTTTR 120 (268)
Q Consensus 97 ~~v~tIle~Ak~~Gk~tGiVTT~~ 120 (268)
+.+..+|+..+++|+.++|||+..
T Consensus 97 ~g~~~~L~~L~~~g~~~~i~Tn~~ 120 (221)
T TIGR02253 97 PGVRDTLMELRESGYRLGIITDGL 120 (221)
T ss_pred CCHHHHHHHHHHCCCEEEEEeCCc
Confidence 457889999999999999999865
No 21
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=20.55 E-value=88 Score=25.07 Aligned_cols=23 Identities=9% Similarity=-0.088 Sum_probs=20.1
Q ss_pred CchhhHHHHHHHcCCcEEEEeec
Q psy17994 97 YFTTSILKWAQDFGKSTGVVTTT 119 (268)
Q Consensus 97 ~~v~tIle~Ak~~Gk~tGiVTT~ 119 (268)
..+..+++++|++|+.++|+|+.
T Consensus 32 ~gv~e~L~~Lk~~g~~l~i~Sn~ 54 (128)
T TIGR01681 32 KEIRDKLQTLKKNGFLLALASYN 54 (128)
T ss_pred HHHHHHHHHHHHCCeEEEEEeCC
Confidence 46788999999999999999875
No 22
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=20.16 E-value=82 Score=27.96 Aligned_cols=24 Identities=17% Similarity=0.335 Sum_probs=18.7
Q ss_pred hHHHHHHhhcCCCCceEEEEcCCccCcc
Q psy17994 156 KDIAYQLVKDDPGRRIKVIMGGGRAKFL 183 (268)
Q Consensus 156 ~dIA~Qli~~~~g~~~DVilGGG~~~F~ 183 (268)
.++|+++++. ++|+|+||....+.
T Consensus 195 ~~~A~~l~~~----G~DvIiG~H~H~~~ 218 (239)
T smart00854 195 RELAHALIDA----GADVVIGHHPHVLQ 218 (239)
T ss_pred HHHHHHHHHc----CCCEEEcCCCCcCC
Confidence 5899999997 89999986544333
Done!