RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17994
(268 letters)
>gnl|CDD|237983 cd00016, alkPPc, Alkaline phosphatase homologues; alkaline
phosphatases are non-specific phosphomonoesterases that
catalyze the hydrolysis reaction via a phosphoseryl
intermediate to produce inorganic phosphate and the
corresponding alcohol, optimally at high pH. Alkaline
phosphatase exists as a dimer, each monomer binding 2
zinc atoms and one magnesium atom, which are essential
for enzymatic activity.
Length = 384
Score = 262 bits (671), Expect = 2e-86
Identities = 111/245 (45%), Positives = 148/245 (60%), Gaps = 43/245 (17%)
Query: 1 MFLGDGMSLPTITAARIYKGQLGERGPDEPRGEQDHLSFENFPFTGMAKTYCVDQQTADS 60
+F+GDGM + TITAARIYKGQ E G +E + L F++FP TG++KTY VD Q DS
Sbjct: 11 LFIGDGMGVSTITAARIYKGQ--ENGAEEGK-----LLFDDFPLTGLSKTYSVDSQVTDS 63
Query: 61 ACTATAYLCGVKNNFGTIGVNSKISRKNCEGMKNPEYFTTSILKWAQDFGKSTGVVTTTR 120
A TATAY GVK N G IGV++ ++ P TS+L+WA+ GK+TG+VTTTR
Sbjct: 64 AATATAYATGVKTNNGAIGVSAD-VSRDDTDNGKPV---TSVLEWAKAAGKATGIVTTTR 119
Query: 121 VTHASPAGTYAHTAERDWECDADIKKDPERIGNGCKDIAYQLVKDDPGRRIKVIMGGGRA 180
VTHA+PA YAH +R+WE +DIA QL+++ PGR I V++GGGR
Sbjct: 120 VTHATPAAFYAHVPDRNWE----------------EDIAEQLIEEAPGRGIDVLLGGGRR 163
Query: 181 KFLPVSSKDDEGNVGERSDGQDLIKEWLLDKTNRTKKAKFITTRQQLLELDPNKGTDYLL 240
FLP ++ G R DG+DLI EW + K +++ R +LL ++ TD LL
Sbjct: 164 YFLPSTTG------GGRKDGRDLIAEW------KAKGYQYVWNRTELLAVNVA--TDKLL 209
Query: 241 GMNLF 245
G LF
Sbjct: 210 G--LF 212
>gnl|CDD|214515 smart00098, alkPPc, Alkaline phosphatase homologues.
Length = 419
Score = 251 bits (644), Expect = 6e-82
Identities = 114/245 (46%), Positives = 149/245 (60%), Gaps = 31/245 (12%)
Query: 1 MFLGDGMSLPTITAARIYKGQLGERGPDEPRGEQDHLSFENFPFTGMAKTYCVDQQTADS 60
+F+GDGM + TITAARI KGQ G + GE+ L+F+ FP ++KTY D Q DS
Sbjct: 5 LFIGDGMGVSTITAARILKGQAGGK-----LGEETLLAFDQFPTGALSKTYNPDYQVTDS 59
Query: 61 ACTATAYLCGVKNNFGTIGVNSKISRKNCEGMKNPEYFTTSILKWAQDFGKSTGVVTTTR 120
A TATAYLCGVK G IGV++ ++ S+L+WA+ GKSTG+VTTTR
Sbjct: 60 AATATAYLCGVKTYNGAIGVDAATGKE-----------VPSVLEWAKKAGKSTGLVTTTR 108
Query: 121 VTHASPAGTYAHTAERDWECDADIKKDPERIGNGCKDIAYQLVKDDPGRRIKVIMGGGRA 180
+THA+PA TYAH A R W DADI E + NGC DIA QL+ + RI V++GGGR+
Sbjct: 109 ITHATPAATYAHVASRKWYNDADIP--AEALENGCGDIARQLINN----RIDVLLGGGRS 162
Query: 181 KFLPVSSKDDEGNVGERSDGQDLIKEWLLDKTNRTKKAKFITTRQQLLELDPNKGTDYLL 240
F P + D EG G R DG++LI+EW + +++ R +LL + NK D LL
Sbjct: 163 YFAPTGTADPEGQRGTRRDGRNLIEEW------KAAGYQYVWDRTELLAVGANK-VDPLL 215
Query: 241 GMNLF 245
G LF
Sbjct: 216 G--LF 218
>gnl|CDD|201110 pfam00245, Alk_phosphatase, Alkaline phosphatase.
Length = 421
Score = 238 bits (608), Expect = 1e-76
Identities = 100/242 (41%), Positives = 137/242 (56%), Gaps = 28/242 (11%)
Query: 1 MFLGDGMSLPTITAARIYKGQLGERGPDEPRGEQDHLSFENFPFTGMAKTYCVDQQTADS 60
+F+GDGM + TITAARI KGQ + E L+ + FP G++KTY VD+Q DS
Sbjct: 6 LFIGDGMGVSTITAARILKGQAKGKLGPET------LAMDRFPLVGLSKTYNVDKQVTDS 59
Query: 61 ACTATAYLCGVKNNFGTIGVNSKISRKNCEGMKNPEYFTTSILKWAQDFGKSTGVVTTTR 120
A TATAYLCGVK G IGV++ S+L+ A+ GKSTG+VTTTR
Sbjct: 60 AATATAYLCGVKTYNGAIGVDTHGKE------------VPSVLEAAKKAGKSTGLVTTTR 107
Query: 121 VTHASPAGTYAHTAERDWECDADIKKDPERIGNGCKDIAYQLVKDDPGRRIKVIMGGGRA 180
+THA+PA TYAH R W D + + GCKDIA+QL+ + +I V++GGGR
Sbjct: 108 ITHATPAATYAHVTNRKWYGDIAM--PASALDEGCKDIAHQLISNRH--KIDVLLGGGRK 163
Query: 181 KFLPVSSKDDEGNVGERSDGQDLIKEWLLDKTNRTKKAKFITTRQQLLELDPNKGTDYLL 240
F P + D G G R DG++LI+EW + +++ R +LL+ + LL
Sbjct: 164 YFFPTGTPDPYGQRGTRLDGRNLIQEW------KHAGYQYVWDRTELLKAKDSPSVTPLL 217
Query: 241 GM 242
G+
Sbjct: 218 GL 219
>gnl|CDD|224699 COG1785, PhoA, Alkaline phosphatase [Inorganic ion transport and
metabolism].
Length = 482
Score = 146 bits (369), Expect = 1e-40
Identities = 86/248 (34%), Positives = 116/248 (46%), Gaps = 53/248 (21%)
Query: 1 MFLGDGMSLPTITAARIYKGQLGERGPDEPRGEQDHLSFENFPFTGMAKTYCVDQQTADS 60
+ +GDGM T+TAAR YKG GP+ P D L G T+ D DS
Sbjct: 64 LLIGDGMGPSTVTAARSYKG-----GPNGPFKGIDTLPDT--GLIGTYSTHSSDSNVTDS 116
Query: 61 ACTATAYLCGVKNNFGTIGVNSKISRKNCEGMKNPEYFTTSILKWAQDFGKSTGVVTTTR 120
A ATA+ GVK G IGV+ + K +IL+ A++ GK+TG+VTTTR
Sbjct: 117 AAAATAFATGVKTYNGAIGVD--PNGKPL----------KTILELAKEAGKATGLVTTTR 164
Query: 121 VTHASPAGTYAHTAERDWECDADIKKDPERIGNGCKDIAYQLVKDDPG---RRIKVIMGG 177
+THA+PA AH RD E +IA Q + ++ V++GG
Sbjct: 165 ITHATPAAFAAHVTSRDDE----------------DEIATQQICPGNAGRNDKVDVLLGG 208
Query: 178 GRAKFLPVSSKDDEGNVGERSDGQDLIKEWLLDKTNRTKKAKFITTRQQLLELDPNKGTD 237
GR FLP K G G R DG+DLI+E + +++ TR +L + D
Sbjct: 209 GRKYFLP---KATAG--GRRDDGRDLIEEA------KAAGYQYVETRAELNAVS--NQDD 255
Query: 238 YLLGMNLF 245
LLG LF
Sbjct: 256 KLLG--LF 261
>gnl|CDD|236706 PRK10518, PRK10518, alkaline phosphatase; Provisional.
Length = 476
Score = 68.2 bits (167), Expect = 4e-13
Identities = 58/200 (29%), Positives = 80/200 (40%), Gaps = 53/200 (26%)
Query: 1 MFLGDGMSLPTITAARIY-KGQLGE-RGPDEPRGEQDHLSFENFPFTGMAKTYCVDQQT- 57
+ +GDGM ITAAR Y +G G +G D P TG Y ++++T
Sbjct: 74 LLIGDGMGDSEITAARNYAEGAGGFFKGIDA------------LPLTGQYTHYALNKKTG 121
Query: 58 -----ADSACTATAYLCGVKNNFGTIGVNSKISRKNCEGMKNPEYFTTSILKWAQDFGKS 112
DSA +ATA+ GVK G +GV+ ++L+ A+ GK+
Sbjct: 122 KPDYVTDSAASATAWSTGVKTYNGALGVDIH---------GKDH---PTLLELAKAAGKA 169
Query: 113 TGVVTTTRVTHASPAGTYAHTAERDWECDADIKKDPERIGNGCKD----------IAYQL 162
TG V+T + A+PA AH R C PE C I QL
Sbjct: 170 TGNVSTAELQDATPAALVAHVTSRK--C-----YGPEETSEKCPGNALENGGRGSITEQL 222
Query: 163 VKDDPGRRIKVIMGGGRAKF 182
+ R V +GGG F
Sbjct: 223 LN----TRADVTLGGGAKTF 238
>gnl|CDD|235252 PRK04199, rpl10e, 50S ribosomal protein L10e; Reviewed.
Length = 172
Score = 29.8 bits (68), Expect = 0.99
Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 4/23 (17%)
Query: 3 LGDGMSL----PTITAARIYKGQ 21
+ DGM L P TAAR+ KGQ
Sbjct: 108 VSDGMRLAFGKPVGTAARVEKGQ 130
>gnl|CDD|233776 TIGR02198, rfaE_dom_I, rfaE bifunctional protein, domain I. RfaE
is a protein involved in the biosynthesis of
ADP-L-glycero-D-manno-heptose, a precursor for LPS inner
core biosynthesis. RfaE is a bifunctional protein in E.
coli, and separate proteins in some other genome. The
longer, N-terminal domain I (this family) is suggested
to act in D-glycero-D-manno-heptose 1-phosphate
biosynthesis, while domain II (TIGR02199) adds ADP to
yield ADP-D-glycero-D-manno-heptose [Cell envelope,
Biosynthesis and degradation of surface polysaccharides
and lipopolysaccharides].
Length = 315
Score = 29.9 bits (68), Expect = 1.3
Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 3/58 (5%)
Query: 177 GGRAKFLPVSSKDDEGNVGERSDGQDLIKEWLL--DKTNRT-KKAKFITTRQQLLELD 231
G R + V D+ G E ++ I L DK T K + + QQLL +D
Sbjct: 61 GARVFLVGVVGDDEAGKRLEALLAEEGIDTSGLIRDKDRPTTTKTRVLARNQQLLRVD 118
>gnl|CDD|173705 cd05614, STKc_MSK2_N, N-terminal catalytic domain of the Protein
Serine/Threonine Kinase, Mitogen and stress-activated
kinase 2. Serine/Threonine Kinases (STKs), Mitogen and
stress-activated kinase (MSK) subfamily, MSK2,
N-terminal catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The MSK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MSKs contain an N-terminal kinase domain (NTD)
from the AGC family and a C-terminal kinase domain (CTD)
from the CAMK family, similar to 90 kDa ribosomal
protein S6 kinases (RSKs). MSKs are activated by two
major signaling cascades, the Ras-MAPK and p38 stress
kinase pathways, which trigger phosphorylation in the
activation loop (A-loop) of the CTD of MSK. The active
CTD phosphorylates the hydrophobic motif (HM) of NTD,
which facilitates the phosphorylation of the A-loop and
activates the NTD, which in turn phosphorylates
downstream targets. MSK2 and MSK1 play nonredundant
roles in activating histone H3 kinases, which play
pivotal roles in compaction of the chromatin fiber. MSK2
is the required H3 kinase in response to stress stimuli
and activation of the p38 MAPK pathway. MSK2 also plays
a role in the pathogenesis of psoriasis.
Length = 332
Score = 29.9 bits (67), Expect = 1.4
Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 14/87 (16%)
Query: 96 EYFTTSILKWAQDFGK-----STGVVTTTRVTHASP------AGTYAHTAERDWECDADI 144
EY I++ GK S G++ +T ASP T + + R +CD
Sbjct: 171 EYMAPEIIRGKGGHGKAVDWWSLGILIFELLTGASPFTLEGERNTQSEVSRRILKCDPPF 230
Query: 145 KKDPERIGNGCKDIAYQLVKDDPGRRI 171
P IG +D+ ++L++ DP +R+
Sbjct: 231 ---PSFIGPEAQDLLHKLLRKDPKKRL 254
>gnl|CDD|225425 COG2870, RfaE, ADP-heptose synthase, bifunctional sugar
kinase/adenylyltransferase [Cell envelope biogenesis,
outer membrane].
Length = 467
Score = 29.6 bits (67), Expect = 1.6
Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
Query: 177 GGRAKFLPVSSKDDEGNVGERS-DGQDLIKEWLLDKTNRT-KKAKFITTRQQLLELD 231
G A + V KD+ G + + L DK T K + ++ QQLL LD
Sbjct: 64 GANAYLVGVVGKDEAGKALIELLKANGIDSDLLRDKNRPTIVKLRVLSRNQQLLRLD 120
>gnl|CDD|214538 smart00146, PI3Kc, Phosphoinositide 3-kinase, catalytic domain.
Phosphoinositide 3-kinase isoforms participate in a
variety of processes, including cell motility, the Ras
pathway, vesicle trafficking and secretion, and
apoptosis. These homologues may be either lipid kinases
and/or protein kinases: the former phosphorylate the
3-position in the inositol ring of inositol
phospholipids. The ataxia telangiectesia-mutated gene
produced, the targets of rapamycin (TOR) and the
DNA-dependent kinase have not been found to possess
lipid kinase activity. Some of this family possess PI-4
kinase activities.
Length = 240
Score = 27.6 bits (62), Expect = 5.8
Identities = 14/61 (22%), Positives = 21/61 (34%), Gaps = 3/61 (4%)
Query: 61 ACTATAYLCG---VKNNFGTIGVNSKISRKNCEGMKNPEYFTTSILKWAQDFGKSTGVVT 117
T G V N T+ K RK + + T + LK + F ++TG
Sbjct: 43 KVIPTGPKSGLIEVVPNSTTLHEILKEYRKQKGKVLDLRSQTATRLKKLELFLEATGKFP 102
Query: 118 T 118
Sbjct: 103 D 103
>gnl|CDD|235206 PRK04031, PRK04031, DNA primase; Provisional.
Length = 408
Score = 27.9 bits (63), Expect = 6.6
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 13/76 (17%)
Query: 170 RIKVIMGGGRAKFLPVSSKDDEGNVGERSDGQDLIKEWLLDKTNRTKKAKFI----TTRQ 225
IK + G A+ L D+ NV + +DL+ + L++ K I Q
Sbjct: 320 HIKELKGTLEARLL-----DENWNVIKEVPVRDLVDK--LEEAE--DKVYAIVFDGIITQ 370
Query: 226 QLLELDPNKGTDYLLG 241
+LL+L KG YL+G
Sbjct: 371 RLLDLASEKGVKYLIG 386
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.135 0.413
Gapped
Lambda K H
0.267 0.0735 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 13,645,810
Number of extensions: 1252008
Number of successful extensions: 833
Number of sequences better than 10.0: 1
Number of HSP's gapped: 813
Number of HSP's successfully gapped: 14
Length of query: 268
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 173
Effective length of database: 6,723,972
Effective search space: 1163247156
Effective search space used: 1163247156
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.1 bits)