RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17994
(268 letters)
>1k7h_A Alkaline phosphatase; hydrolase, transferase, phosphomonoester,
extended beta SHEE triad, metal triad; HET: NAG; 1.92A
{Pandalus borealis} SCOP: c.76.1.1 PDB: 1shq_A* 1shn_A*
Length = 476
Score = 307 bits (788), Expect = e-103
Identities = 126/246 (51%), Positives = 158/246 (64%), Gaps = 11/246 (4%)
Query: 1 MFLGDGMSLPTITAARIYKGQLGERGPDEPRGEQDHLSFENFPFTGMAKTYCVDQQTADS 60
FLGDGMSL T+TAARIYKG L + E++ +S+E F F ++KTY D+Q DS
Sbjct: 33 FFLGDGMSLSTVTAARIYKGGLTGKF------EREKISWEEFDFAALSKTYNTDKQVTDS 86
Query: 61 ACTATAYLCGVKNNFGTIGVNSKISRKNCEGMKNPEYFTTSILKWAQDFGKSTGVVTTTR 120
A +ATAYL GVK N G IG+++ R NC + FT SI W Q+ G+STGVVT+TR
Sbjct: 87 AASATAYLTGVKTNQGVIGLDANTVRTNCSYQLDESLFTYSIAHWFQEAGRSTGVVTSTR 146
Query: 121 VTHASPAGTYAHTAERDWECDADIKKDPERIGNGCKDIAYQLVKDDPGRRIKVIMGGGRA 180
VTHA+PAGTYAH A+RDWE D+D+ D E C DIA QLV +PG+ KVIMGGGR
Sbjct: 147 VTHATPAGTYAHVADRDWENDSDVVHDREDPE-ICDDIAEQLVFREPGKNFKVIMGGGRR 205
Query: 181 KFLPVSSKDDE-GNVGERSDGQDLIKEWLLDKTNRTKKAKFITTRQQLLELDPNKGTDYL 239
F P + D E G GER DG+ LI +WL DK ++ A ++ R LL +D TDYL
Sbjct: 206 GFFPEEALDIEDGIPGEREDGKHLITDWLDDKASQGATASYVWNRDDLLAVDIAN-TDYL 264
Query: 240 LGMNLF 245
+G LF
Sbjct: 265 MG--LF 268
>1zed_A Alkaline phosphatase; phosphoserine, substrate analog, hydro; HET:
NAG PNP; 1.57A {Homo sapiens} SCOP: c.76.1.1 PDB:
1zeb_A* 1zef_A* 2glq_A* 3mk0_A* 3mk1_A* 3mk2_A* 1ew2_A*
Length = 484
Score = 294 bits (755), Expect = 5e-98
Identities = 103/250 (41%), Positives = 143/250 (57%), Gaps = 23/250 (9%)
Query: 1 MFLGDGMSLPTITAARIYKGQLGERGPDEPRGEQDHLSFENFPFTGMAKTYCVDQQTADS 60
+FLGDGM + T+TAARI KGQ ++ G + L+ + FP+ ++KTY VD+ DS
Sbjct: 38 IFLGDGMGVSTVTAARILKGQKKDKL-----GPEIPLAMDRFPYVALSKTYNVDKHVPDS 92
Query: 61 ACTATAYLCGVKNNFGTIGVNSKISRKNCEGMKNPEYFTTSILKWAQDFGKSTGVVTTTR 120
TATAYLCGVK NF TIG+++ C + E S++ A+ GKS GVVTTTR
Sbjct: 93 GATATAYLCGVKGNFQTIGLSAAARFNQCNTTRGNEV--ISVMNRAKKAGKSVGVVTTTR 150
Query: 121 VTHASPAGTYAHTAERDWECDADIKKDPERIGNGCKDIAYQLVKDDPGRRIKVIMGGGRA 180
V HASPAGTYAHT R+W DAD+ GC+DIA QL+ I VI+GGGR
Sbjct: 151 VQHASPAGTYAHTVNRNWYSDADVPASAR--QEGCQDIATQLIS---NMDIDVILGGGRK 205
Query: 181 KFLPVSSKD-----DEGNVGERSDGQDLIKEWLLDKTNRTKKAKFITTRQQLLELDPNKG 235
+ + D D G R DG++L++EWL + A+++ R +L++ +
Sbjct: 206 YMFRMGTPDPEYPDDYSQGGTRLDGKNLVQEWLAKRQG----ARYVWNRTELMQASLDPS 261
Query: 236 TDYLLGMNLF 245
+L+G LF
Sbjct: 262 VTHLMG--LF 269
>3tg0_A Apase, alkaline phosphatase; hydrolase; 1.20A {Escherichia coli}
PDB: 1b8j_A 1ed9_A 1ew8_A 1ew9_A 1ed8_A 1y6v_A 3bdg_B
1elx_A 2g9y_A 2ga3_A* 3bdh_A 3cmr_A 1elz_A 1hjk_A*
1hqa_A 1ely_A 3dyc_A 1ali_A 1alj_A 3bdf_A ...
Length = 449
Score = 251 bits (643), Expect = 1e-81
Identities = 53/245 (21%), Positives = 86/245 (35%), Gaps = 32/245 (13%)
Query: 1 MFLGDGMSLPTITAARIYKGQLGERGPDEPRGEQDHLSFENFPFTGMAKTYCVDQQTADS 60
+ +GDGM ITAAR Y +G + + K DS
Sbjct: 47 LLIGDGMGDSEITAARNYAEGA----GGFFKGIDALPLTGQYTHYALNKKTGKPDYVTDS 102
Query: 61 ACTATAYLCGVKNNFGTIGVNSKISRKNCEGMKNPEYFTTSILKWAQDFGKSTGVVTTTR 120
A +ATA+ GVK G +GV+ + +IL+ A+ G +TG V+T
Sbjct: 103 AASATAWSTGVKTYNGALGVDIH---------EKD---HPTILEMAKAAGLATGNVSTAE 150
Query: 121 VTHASPAGTYAHTAERDWECDADIKKDPERIGNGCKDIAYQLVKDDPGRRIKVIMGGGRA 180
+ A+PA AH R + + K + + R V +GGG
Sbjct: 151 LQDATPAALVAHVTSRKCYGPSATSEKCPG-NALEKGGKGSITEQLLNARADVTLGGGAK 209
Query: 181 KFLPVSSKDDEGNVGERSDGQDLIKEWLLDKTNRTKKAKFITTRQQLLELDPNKGTDYLL 240
F ++ G+ L ++ + + + ++ L + LL
Sbjct: 210 TFAETATAG-------EWQGKTLREQA------QARGYQLVSDAASLNSVTEANQQKPLL 256
Query: 241 GMNLF 245
G LF
Sbjct: 257 G--LF 259
>3e2d_A Alkaline phosphatase; cold-adaptation, metalloenzyme, dimer,
psychrophilic bacteria, crystallography, hydrolase;
1.40A {Vibrio SP}
Length = 502
Score = 249 bits (636), Expect = 4e-80
Identities = 58/259 (22%), Positives = 93/259 (35%), Gaps = 60/259 (23%)
Query: 1 MFLGDGMSLPTITAARIYKGQLGERGPDEPRGEQDHLSFENFPFTGMAKTYCVDQQTADS 60
+ +GDGM + Y Q + G + T+ D DS
Sbjct: 8 LMIGDGMGPQQVGLLETYANQAPNSIYKG--NKTAIYQLAQEGVIGSSLTHPEDAIVVDS 65
Query: 61 ACTATAYLCGVKNNFGTIGVNSKISRKNCEGMKNPEYFTTSILKWAQDFGKSTGVVTTTR 120
AC+AT G+ ++ IG++S+ N ++L+ A+ GK+TG+V+ TR
Sbjct: 66 ACSATMLATGIYSSSEVIGIDSQ---------GNH---VETVLEKAKKAGKATGLVSDTR 113
Query: 121 VTHASPAGTYAHTAERDWECDADIKKDPERIGNGCKDIAYQLVKDDPGRRIKVIMGGGRA 180
+THA+PA AH R E IA ++ V++ GG
Sbjct: 114 LTHATPASFAAHQPHRSLEN----------------QIASDML----ATGADVMLSGGLR 153
Query: 181 KFLPVSSKDDEGNV--------------GERSDGQDLIKEWLLDKTNRTKKAKFITTRQQ 226
++P S+ D +R D ++L+ E + R
Sbjct: 154 HWIPKSTNDKGETYKQLEKLTQGDVYLKSKRKDDRNLLTEA------EKDGYQLAFNRNM 207
Query: 227 LLELDPNKGTDYLLGMNLF 245
L + D LLG LF
Sbjct: 208 LDDAK----GDKLLG--LF 220
>2w0y_A APH, alkaline phosphatase; hydrolase, halophilic; 1.7A
{Halobacterium salinarum R1} PDB: 2x98_A
Length = 473
Score = 241 bits (617), Expect = 2e-77
Identities = 65/249 (26%), Positives = 92/249 (36%), Gaps = 54/249 (21%)
Query: 1 MFLGDGMSLPTITAARIYKGQL--GERGPDEPRGEQDHLSFENFPFTGMAKTYCVD--QQ 56
++ DGM I+AAR ER P + F+ F G T+ D +
Sbjct: 52 AYIVDGMGQTQISAARYLNAYKTAPERFPLNVSPAETPTGFDAFSSRGSMTTFPDDPYET 111
Query: 57 TADSACTATAYLCGVKNNFGTIGVNSKISRKNCEGMKNPEYFTTSILKWAQDFGKSTGVV 116
T DSA ATA+ GVK G IG G ++L+ A G +TG++
Sbjct: 112 TTDSAAAATAFASGVKTYNGAIGGV------QTSGGGFQRV--DTVLERASAQGYATGLI 163
Query: 117 TTTRVTHASPAGTYAHTAERDWECDADIKKDPERIGNGCKDIAYQLVKDDPGRRIKVIMG 176
TTT THA+PA AH +R + +IA Q + + VI+G
Sbjct: 164 TTTEATHATPAAFAAHVEDRGNQ----------------TEIARQYI---EETQPDVILG 204
Query: 177 GGRAKFLPVSSKDDEGNVGERSDGQDLIKEWLLDKTNRTKKAKFITTRQQLLELDPNKGT 236
G R F + S+G L+ R T +L +D
Sbjct: 205 GQRRDFEA-----------DASNGGTLVDAA------RDNGYTIAETAAELDAVD----D 243
Query: 237 DYLLGMNLF 245
+LG LF
Sbjct: 244 PPVLG--LF 250
>2w5v_A Alkaline phosphatase; psychrophiles, cold adaptation, hydrolase;
HET: SEP; 1.78A {Antarctic bacterium TAB5} PDB: 2w5w_A*
2w5x_A* 2iuc_A 2iuc_B
Length = 375
Score = 237 bits (607), Expect = 4e-77
Identities = 51/246 (20%), Positives = 80/246 (32%), Gaps = 69/246 (28%)
Query: 1 MFLGDGMSLPTITAARIYKGQLGERGPDEPRGEQDHLSFENFPFTGMAKTYCVDQQTADS 60
+ + DG L I++ +K ++ F G+ KT + DS
Sbjct: 39 LLISDGAGLSQISSTFYFKSG--------------TPNYTQFKNIGLIKTSSSREDVTDS 84
Query: 61 ACTATAYLCGVKNNFGTIGVNSKISRKNCEGMKNPEYFTTSILKWAQDFGKSTGVVTTTR 120
A ATA+ CG+K IGV SI++ A TGVV T+
Sbjct: 85 ASGATAFSCGIKTYNAAIGVADD---------STA---VKSIVEIAALNNIKTGVVATSS 132
Query: 121 VTHASPAGTYAHTAERDWECDADIKKDPERIGNGCKDIAYQLVKDDPGRRIKVIMGGGRA 180
+T A+PA YAH R E ++IA + + GGG
Sbjct: 133 ITDATPASFYAHALNRGLE----------------EEIAMDMT----ESDLDFFAGGGLN 172
Query: 181 KFLPVSSKDDEGNVGERSDGQDLIKEWLLDKTNRTKKAKFITTRQQLLELDPNKGTDYLL 240
F +R D +D++ K +F L + ++ +
Sbjct: 173 YF------------TKRKDKKDVLAIL--------KGNQFTINTTALTDFSSIA-SNRKM 211
Query: 241 GMNLFF 246
G
Sbjct: 212 G--FLL 215
>3a52_A Cold-active alkaline phosphatase; hydrolase; 2.20A {Shewanella}
Length = 400
Score = 214 bits (546), Expect = 9e-68
Identities = 61/247 (24%), Positives = 89/247 (36%), Gaps = 71/247 (28%)
Query: 1 MFLGDGMSLPTITAARIYKGQLGERGPDEPRGEQDHLSFENFPFTGMAKTYCVDQQ--TA 58
+ +GDGM +A R ++ E + F+ GMA TY +
Sbjct: 5 IMVGDGMGPAYTSAYRYFQDNPDT-------EEIEQTVFDRLL-VGMASTYPARESGYVT 56
Query: 59 DSACTATAYLCGVKNNFGTIGVNSKISRKNCEGMKNPEYFTTSILKWAQDFGKSTGVVTT 118
DSA +ATA G K+ G I V+ K P T+I++ A+ G STGV T
Sbjct: 57 DSAASATALATGFKSYNGAIAVDIN---------KRP---LTTIMQMAKARGMSTGVAVT 104
Query: 119 TRVTHASPAGTYAHTAERDWECDADIKKDPERIGNGCKDIAYQLVKDDPGRRIKVIMGGG 178
+V HA+PA H R + IA ++ VI+GGG
Sbjct: 105 AQVNHATPAAFLTHNESRKNY----------------EAIAADML----KSDADVILGGG 144
Query: 179 RAKFLPVSSKDDEGNVGERSDGQDLIKEWLLDKTNRTKKAKFITTRQQLLELDPNKGTDY 238
R F + L+ ++ K + IT QL +
Sbjct: 145 RKYF-----------------SEALVSQF------SAKGYQHITELAQLDSIT----QPK 177
Query: 239 LLGMNLF 245
+LG LF
Sbjct: 178 VLG--LF 182
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 39.6 bits (92), Expect = 8e-04
Identities = 36/226 (15%), Positives = 70/226 (30%), Gaps = 70/226 (30%)
Query: 97 YFTTSILKWAQDFGKSTGVVTTTRVTH---ASPAGTYA----HTAERDWECDADIKKDPE 149
+F S L+ + F K T +PA + + + +
Sbjct: 27 FFIASQLQ--EQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSS---LVEPSKVGQFD 81
Query: 150 RI--------------GNGCKDI---AYQLVKDDPG---RRIKVI-------MGGGRAKF 182
++ GN DI A +L++++ + ++I + R
Sbjct: 82 QVLNLCLTEFENCYLEGN---DIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFD 138
Query: 183 LPVSSK----DDEGNV------GERSDGQDLIKEWL-----LDKTNRTKKAKFITT-RQQ 226
+S EGN G GQ ++ L +T I +
Sbjct: 139 KKSNSALFRAVGEGNAQLVAIFG----GQGNTDDYFEELRDLYQTYHVLVGDLIKFSAET 194
Query: 227 LLEL--DPNKGTD-YLLGMNLFFFLSWASHSPSGSTCQVYVI-VPV 268
L EL + G+N+ +L S++P Y++ +P+
Sbjct: 195 LSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKD----YLLSIPI 236
Score = 29.2 bits (65), Expect = 1.9
Identities = 38/209 (18%), Positives = 54/209 (25%), Gaps = 86/209 (41%)
Query: 46 GMAK----TYCVDQQTADSACTATAYLCG------VKNN-------FGTIGVNSKISRKN 88
GM T Q + A G V NN FG G K R+N
Sbjct: 1630 GMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFG--GEKGKRIREN 1687
Query: 89 -----CEGMKNPEYFTTSILKWAQD------FGKSTGVVTTTRVT--------------- 122
E + + + T I K + F G+++ T+ T
Sbjct: 1688 YSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDL 1747
Query: 123 --------------H--------ASPAG----------------TYAHTAERDWECDAD- 143
H AS A T RD ++
Sbjct: 1748 KSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNY 1807
Query: 144 --IKKDPERIGNGCKDIAYQLVKDDPGRR 170
I +P R+ A Q V + G+R
Sbjct: 1808 GMIAINPGRVAASFSQEALQYVVERVGKR 1836
Score = 27.7 bits (61), Expect = 6.0
Identities = 28/183 (15%), Positives = 55/183 (30%), Gaps = 58/183 (31%)
Query: 40 ENFPFTGMAKTYCVDQQTADSACTATAYLCGVKNNFGTIGVNSKISRKNCEGMKNPEYFT 99
E +P T + + + + + ++ + + + N V +++ N P
Sbjct: 312 EAYPNTSLPPS--ILEDSLENNEGVPSPMLSISN-LTQEQVQDYVNKTNSHL---PAGKQ 365
Query: 100 TSI-LK-WAQDFGKSTGVVTTTRVTHASPAGTYA-HTAERDWECDADIKKDPERIGNGCK 156
I L A++ VV+ P Y + R + + D RI
Sbjct: 366 VEISLVNGAKNL-----VVS------GPPQSLYGLNLTLRKAKAPSG--LDQSRI----- 407
Query: 157 DIAYQLVKDDP--GRRIKVIMGGGRAKFLPVSS--------------KDDEGNVGERSDG 200
P R++K +FLPV+S D +
Sbjct: 408 ----------PFSERKLKFSN-----RFLPVASPFHSHLLVPASDLINKDLVKNNVSFNA 452
Query: 201 QDL 203
+D+
Sbjct: 453 KDI 455
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.5 bits (91), Expect = 0.001
Identities = 18/115 (15%), Positives = 39/115 (33%), Gaps = 17/115 (14%)
Query: 139 ECDADIKKDPERIGNGCKDIAYQLVKDDPGRRIKVIMGGGRAK---FL----PVSSKDDE 191
E D I + + +G + + + ++ + FL +
Sbjct: 50 EID-HIIMSKDAV-SGTLRL-FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPS 106
Query: 192 GNVGERSDGQDLIKEW----LLDKTNRTKKAKFITTRQQLLELDPNKGTDYLLGM 242
+ +D + + + K N ++ ++ RQ LLEL P K + G+
Sbjct: 107 MMTRMYIEQRD--RLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNV-LIDGV 158
>1cmx_A Protein (ubiquitin YUH1-UBAL); ubiquitin hydrolase,
deubiquitinating enzyme, cysteine protease, enzyme
specificity; 2.25A {Synthetic} SCOP: d.3.1.6
Length = 235
Score = 30.5 bits (68), Expect = 0.43
Identities = 18/137 (13%), Positives = 40/137 (29%), Gaps = 12/137 (8%)
Query: 55 QQTADSACTATAYLCGVKNNFGTIGVNSKISR--KNCEGMKNPE------YFTTSILKWA 106
+Q+ +AC A L + NN + S + K+ + + +L
Sbjct: 83 KQSVKNACGLYAILHSLSNNQSLLEPGSDLDNFLKSQSDTSSSKNRFDDVTTDQFVLNVI 142
Query: 107 QDFGKSTGVVTTTRVTHASPAG----TYAHTAERDWECDADIKKDPERIGNGCKDIAYQL 162
++ ++ + + TY +E D P +G +
Sbjct: 143 KENVQTFSTGQSEAPEATADTNLHYITYVEENGGIFELDGRNLSGPLYLGKSDPTATDLI 202
Query: 163 VKDDPGRRIKVIMGGGR 179
++ R+ M
Sbjct: 203 EQELVRVRVASYMENAN 219
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 27.4 bits (60), Expect = 3.8
Identities = 10/49 (20%), Positives = 15/49 (30%), Gaps = 12/49 (24%)
Query: 188 KDDEGNVGE---RSDGQDLIKEWL------LDKT---NRTKKAKFITTR 224
D V E R + ++EW ++K NR F
Sbjct: 101 LDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQP 149
>2b9v_A Alpha-amino acid ester hydrolase; catalytic triad,
alpha/beta-hydrolase; 2.00A {Acetobacter pasteurianus}
SCOP: b.18.1.13 c.69.1.21 PDB: 2b4k_A 1nx9_A* 1ryy_A
Length = 652
Score = 27.0 bits (59), Expect = 7.9
Identities = 7/33 (21%), Positives = 11/33 (33%), Gaps = 1/33 (3%)
Query: 176 GGGRAKFLPVSSKDDEGNVGERSDGQDLIKEWL 208
G P + E +D D + +WL
Sbjct: 117 QGDYVMTRPPHGPLNPTKTDETTDAWDTV-DWL 148
>1mpx_A Alpha-amino acid ester hydrolase; alpha/beta hydrolase, jellyroll,
selenomethionine; 1.90A {Xanthomonas citri} SCOP:
b.18.1.13 c.69.1.21
Length = 615
Score = 27.0 bits (59), Expect = 8.7
Identities = 8/33 (24%), Positives = 12/33 (36%), Gaps = 1/33 (3%)
Query: 176 GGGRAKFLPVSSKDDEGNVGERSDGQDLIKEWL 208
G P+ + V +D D I +WL
Sbjct: 104 EGDYVMTRPLRGPLNPSEVDHATDAWDTI-DWL 135
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.135 0.413
Gapped
Lambda K H
0.267 0.0643 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,175,285
Number of extensions: 242519
Number of successful extensions: 487
Number of sequences better than 10.0: 1
Number of HSP's gapped: 450
Number of HSP's successfully gapped: 15
Length of query: 268
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 176
Effective length of database: 4,133,061
Effective search space: 727418736
Effective search space used: 727418736
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (25.5 bits)