RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17994
(268 letters)
>d1k7ha_ c.76.1.1 (A:) Alkaline phosphatase {Northern shrimp
(Pandalus borealis) [TaxId: 6703]}
Length = 476
Score = 238 bits (609), Expect = 8e-77
Identities = 119/240 (49%), Positives = 149/240 (62%), Gaps = 8/240 (3%)
Query: 1 MFLGDGMSLPTITAARIYKGQLGERGPDEPRGEQDHLSFENFPFTGMAKTYCVDQQTADS 60
FLGDGMSL T+TAARIYKG L + E +S+E F F ++KTY D+Q DS
Sbjct: 33 FFLGDGMSLSTVTAARIYKGGLTGKFEREK------ISWEEFDFAALSKTYNTDKQVTDS 86
Query: 61 ACTATAYLCGVKNNFGTIGVNSKISRKNCEGMKNPEYFTTSILKWAQDFGKSTGVVTTTR 120
A +ATAYL GVK N G IG+++ R NC + FT SI W Q+ G+STGVVT+TR
Sbjct: 87 AASATAYLTGVKTNQGVIGLDANTVRTNCSYQLDESLFTYSIAHWFQEAGRSTGVVTSTR 146
Query: 121 VTHASPAGTYAHTAERDWECDADIKKDPERIGNGCKDIAYQLVKDDPGRRIKVIMGGGRA 180
VTHA+PAGTYAH A+RDWE D+D+ D E C DIA QLV +PG+ KVIMGGGR
Sbjct: 147 VTHATPAGTYAHVADRDWENDSDVVHDRED-PEICDDIAEQLVFREPGKNFKVIMGGGRR 205
Query: 181 KFLPVSSKDDE-GNVGERSDGQDLIKEWLLDKTNRTKKAKFITTRQQLLELDPNKGTDYL 239
F P + D E G GER DG+ LI +WL DK ++ A ++ R LL +D +
Sbjct: 206 GFFPEEALDIEDGIPGEREDGKHLITDWLDDKASQGATASYVWNRDDLLAVDIANTDYLM 265
>d1zeda1 c.76.1.1 (A:1-479) Alkaline phosphatase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 479
Score = 221 bits (565), Expect = 3e-70
Identities = 101/246 (41%), Positives = 142/246 (57%), Gaps = 21/246 (8%)
Query: 1 MFLGDGMSLPTITAARIYKGQLGERGPDEPRGEQDHLSFENFPFTGMAKTYCVDQQTADS 60
+FLGDGM + T+TAARI KGQ ++ G + L+ + FP+ ++KTY VD+ DS
Sbjct: 38 IFLGDGMGVSTVTAARILKGQKKDKL-----GPEIPLAMDRFPYVALSKTYNVDKHVPDS 92
Query: 61 ACTATAYLCGVKNNFGTIGVNSKISRKNCEGMKNPEYFTTSILKWAQDFGKSTGVVTTTR 120
TATAYLCGVK NF TIG+++ C + E S++ A+ GKS GVVTTTR
Sbjct: 93 GATATAYLCGVKGNFQTIGLSAAARFNQCNTTRGNE--VISVMNRAKKAGKSVGVVTTTR 150
Query: 121 VTHASPAGTYAHTAERDWECDADIKKDPERIGNGCKDIAYQLVKDDPGRRIKVIMGGGRA 180
V HASPAGTYAHT R+W DAD+ + GC+DIA QL+ I VI+GGGR
Sbjct: 151 VQHASPAGTYAHTVNRNWYSDADVPASARQ--EGCQDIATQLI---SNMDIDVILGGGRK 205
Query: 181 KFLPVSSKD-----DEGNVGERSDGQDLIKEWLLDKTNRTKKAKFITTRQQLLELDPNKG 235
+ + D D G R DG++L++EWL + A+++ R +L++ +
Sbjct: 206 YMFRMGTPDPEYPDDYSQGGTRLDGKNLVQEWLAKRQG----ARYVWNRTELMQASLDPS 261
Query: 236 TDYLLG 241
+L+G
Sbjct: 262 VTHLMG 267
>d1y6va1 c.76.1.1 (A:1-449) Alkaline phosphatase {Escherichia coli
[TaxId: 562]}
Length = 449
Score = 170 bits (431), Expect = 8e-51
Identities = 59/251 (23%), Positives = 95/251 (37%), Gaps = 48/251 (19%)
Query: 1 MFLGDGMSLPTITAARIYKGQLGERGPDEPRGEQDHLSFENFPFTGMAKTYCVDQQT--- 57
+ +GDGM ITAAR Y G + P TG Y ++++T
Sbjct: 47 LLIGDGMGDSEITAARNYAEGAGGF----------FKGIDALPLTGQYTHYALNKKTGKP 96
Query: 58 ---ADSACTATAYLCGVKNNFGTIGVNSKISRKNCEGMKNPEYFTTSILKWAQDFGKSTG 114
DSA +ATA+ GVK G +GV+ K+ +IL+ A+ G +TG
Sbjct: 97 DYVTDSAASATAWSTGVKTYNGALGVDIH--EKDHP----------TILEMAKAAGLATG 144
Query: 115 VVTTTRVTHASPAGTYAHTAERDWECDADIKK---DPERIGNGCKDIAYQLVKDDPGRRI 171
V+T + A+PA AH R + + G I QL+ R
Sbjct: 145 NVSTAELQDATPAALVAHVTSRKCYGPSATSEKCPGNALEKGGKGSITEQLLN----ARA 200
Query: 172 KVIMGGGRAKFLPVSSKDDEGNVGERSDGQDLIKEWLLDKTNRTKKAKFITTRQQLLELD 231
V +GGG F ++ + G+ L ++ + + + ++ L +
Sbjct: 201 DVTLGGGAKTFAETATAGEW-------QGKTLREQA------QARGYQLVSDAASLNSVT 247
Query: 232 PNKGTDYLLGM 242
LLG+
Sbjct: 248 EANQQKPLLGL 258
>d1vlba1 a.56.1.1 (A:81-193) Aldehyde oxidoreductase, domain 2
{Desulfovibrio gigas [TaxId: 879]}
Length = 113
Score = 31.6 bits (71), Expect = 0.029
Identities = 13/94 (13%), Positives = 22/94 (23%), Gaps = 3/94 (3%)
Query: 114 GVVTTTRVTHASPAGTYAHTAERDWECDADIKKDPERIGNGCKDIAYQLVKDDPGRRIKV 173
G + D++ ++ N C+ Y+ + D V
Sbjct: 16 GGAQCGFCSPGFIVSAKGLLDTNADPSREDVRDWFQKHRNACRCTGYKPLVDAVMDAAAV 75
Query: 174 IMGGGRAKFLPVSSKDDEGNVGE---RSDGQDLI 204
I G L D G R +
Sbjct: 76 INGKKPETDLEFKMPADGRIWGSKYPRPTAVAKV 109
>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 263
Score = 26.9 bits (59), Expect = 2.3
Identities = 19/79 (24%), Positives = 32/79 (40%), Gaps = 6/79 (7%)
Query: 95 PEYFTTSILKWAQDFGKSTGVVTTTRVTHASP--AGTYAHTAERDWECDADIKKDPERIG 152
PE + D S GV+ + P A TY T +R + P+ +
Sbjct: 173 PEMIEGRMHDEKVDLW-SLGVLCYEFLVGKPPFEANTYQETYKRISRVEFTF---PDFVT 228
Query: 153 NGCKDIAYQLVKDDPGRRI 171
G +D+ +L+K +P +R
Sbjct: 229 EGARDLISRLLKHNPSQRP 247
>d1vcta1 a.7.12.1 (A:9-107) Hypothetical protein PH0236, N-terminal
domain {Pyrococcus horikoshii [TaxId: 53953]}
Length = 99
Score = 25.7 bits (56), Expect = 3.0
Identities = 6/23 (26%), Positives = 10/23 (43%)
Query: 143 DIKKDPERIGNGCKDIAYQLVKD 165
I E I N D+A +++
Sbjct: 75 QIANAIEDISNAAGDLAKMVLEG 97
>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 316
Score = 26.2 bits (57), Expect = 4.7
Identities = 15/89 (16%), Positives = 30/89 (33%), Gaps = 6/89 (6%)
Query: 85 SRKNCEGMKNPEYFTTSILKWAQDFGKSTGVVTTTRVTHASP--AGTYAHTAERDWECDA 142
+ PE +T + D+ S G++ + +P T E+ +
Sbjct: 160 TLCGTPDYIAPEVVSTKPYNKSIDW-WSFGILIYEMLAGYTPFYDSNTMKTYEKILNAEL 218
Query: 143 DIKKDPERIGNGCKDIAYQLVKDDPGRRI 171
P KD+ +L+ D +R+
Sbjct: 219 RF---PPFFNEDVKDLLSRLITRDLSQRL 244
>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo
sapiens) [TaxId: 9606]}
Length = 263
Score = 25.8 bits (56), Expect = 5.5
Identities = 14/78 (17%), Positives = 20/78 (25%), Gaps = 2/78 (2%)
Query: 95 PEYFTTSILKWAQDFGKSTGVVTTTRVTHASPAGTYAHTAE-RDWECDADIKKDPERIGN 153
PE F+ S D S GV+ + +E + P
Sbjct: 171 PEVFSFSRYSSKSDVW-SFGVLMWEVFSEGKIPYENRSNSEVVEDISTGFRLYKPRLAST 229
Query: 154 GCKDIAYQLVKDDPGRRI 171
I K+ P R
Sbjct: 230 HVYQIMNHCWKERPEDRP 247
>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal
recognition particle receptor FtsY {Escherichia coli
[TaxId: 562]}
Length = 211
Score = 25.8 bits (56), Expect = 5.9
Identities = 14/81 (17%), Positives = 26/81 (32%), Gaps = 9/81 (11%)
Query: 99 TTSILK---WAQDFGKSTGVVTTTRVTHASPAGTYAHTAERDWECDADIKKDPERIGNGC 155
TT+I K + GKS + A+ W +I + G
Sbjct: 23 TTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQ------VWGQRNNIPVIAQHTGADS 76
Query: 156 KDIAYQLVKDDPGRRIKVIMG 176
+ + ++ R I V++
Sbjct: 77 ASVIFDAIQAAKARNIDVLIA 97
>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase
kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId:
9986]}
Length = 277
Score = 25.4 bits (55), Expect = 6.8
Identities = 15/91 (16%), Positives = 28/91 (30%), Gaps = 8/91 (8%)
Query: 89 CEGMKNPEYFTTSILKWAQDFGK-----STGVVTTTRVTHASP--AGTYAHTAERDWECD 141
PE S+ +GK STGV+ T + + P +
Sbjct: 172 TPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHRKQMLMLRMIMSGN 231
Query: 142 ADIK-KDPERIGNGCKDIAYQLVKDDPGRRI 171
+ + + KD+ + + P +R
Sbjct: 232 YQFGSPEWDDYSDTVKDLVSRFLVVQPQKRY 262
>d2gl5a1 c.1.11.2 (A:123-400) Putative dehydratase protein STM2273
{Salmonella typhimurium [TaxId: 90371]}
Length = 278
Score = 25.4 bits (54), Expect = 7.9
Identities = 11/43 (25%), Positives = 14/43 (32%), Gaps = 3/43 (6%)
Query: 129 TYAHTAERDWECDADIKKDPERIGNGCKDIA---YQLVKDDPG 168
TYA + W I PE + Y +K DP
Sbjct: 8 TYASQLQFGWGDKNHILVTPEEYAEAARAALDDGYDAIKVDPL 50
>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein
kinase, SLK {Human (Homo sapiens) [TaxId: 9606]}
Length = 288
Score = 25.3 bits (55), Expect = 8.7
Identities = 12/108 (11%), Positives = 30/108 (27%), Gaps = 11/108 (10%)
Query: 75 FGTIGVNSKISRKNCEGMKNPEYFTTSILKWAQDFGK---------STGVVTTTRVTHAS 125
FG N++ ++ + P + ++ + S G+
Sbjct: 154 FGVSAKNTRTIQRRDSFIGTPYWMAPEVVMCETSKDRPYDYKADVWSLGITLIEMAEIEP 213
Query: 126 P--AGTYAHTAERDWECDADIKKDPERIGNGCKDIAYQLVKDDPGRRI 171
P + + + P R + KD + ++ + R
Sbjct: 214 PHHELNPMRVLLKIAKSEPPTLAQPSRWSSNFKDFLKKCLEKNVDARW 261
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.135 0.413
Gapped
Lambda K H
0.267 0.0537 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,028,034
Number of extensions: 47310
Number of successful extensions: 110
Number of sequences better than 10.0: 1
Number of HSP's gapped: 98
Number of HSP's successfully gapped: 13
Length of query: 268
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 184
Effective length of database: 1,254,276
Effective search space: 230786784
Effective search space used: 230786784
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.2 bits)