BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17995
(120 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1G25|A Chain A, Solution Structure Of The N-Terminal Domain Of The Human
Tfiih Mat1 Subunit
Length = 65
Score = 113 bits (282), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 50/65 (76%), Positives = 56/65 (86%)
Query: 1 MDDQECPRCKTTKYRKPTLKLMVNICGHPLCEGCVDLLFLKGTGNCYECNQPLRRGNFRV 60
MDDQ CPRCKTTKYR P+LKLMVN+CGH LCE CVDLLF++G GNC EC PLR+ NFRV
Sbjct: 1 MDDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFRV 60
Query: 61 QLFDD 65
QLF+D
Sbjct: 61 QLFED 65
>pdb|1BD9|A Chain A, Human Phosphatidylethanolamine Binding Protein
pdb|1BD9|B Chain B, Human Phosphatidylethanolamine Binding Protein
pdb|1BEH|A Chain A, Human Phosphatidylethanolamine Binding Protein In Complex
With Cacodylate
pdb|1BEH|B Chain B, Human Phosphatidylethanolamine Binding Protein In Complex
With Cacodylate
pdb|2QYQ|A Chain A, Human Raf Kinase Inhibitor Protein (Rkip) In Complex With
O- Phosphotyrosine
pdb|2L7W|A Chain A, Solution Structure Of The Human Raf-1 Kinase Inhibitor
Protein
Length = 187
Score = 30.8 bits (68), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 56/129 (43%), Gaps = 39/129 (30%)
Query: 1 MDDQECPRCKTTKYRKPTLKLMVNICGHPLCEGCVDLLFL-----KGTG------NCYEC 49
+ D + P K KYR+ L+VN+ G+ + G V ++ KGTG YE
Sbjct: 68 LTDPDAPSRKDPKYREWHHFLVVNMKGNDISSGTVLSDYVGSGPPKGTGLHRYVWLVYEQ 127
Query: 50 NQPLR-------------RGNFRVQLFDDSSVEKEVEIRKKLLKD-YNKVEEDFNSLAEY 95
++PL+ RG F+V +S K+ E+R + Y AE+
Sbjct: 128 DRPLKCDEPILSNRSGDHRGKFKV-----ASFRKKYELRAPVAGTCYQ---------AEW 173
Query: 96 NDYLEEIEE 104
+DY+ ++ E
Sbjct: 174 DDYVPKLYE 182
>pdb|3ADF|A Chain A, Crystal Structure Of A Monomeric Green Fluorescent
Protein, Azami- Green (Mag)
pdb|3ADF|B Chain B, Crystal Structure Of A Monomeric Green Fluorescent
Protein, Azami- Green (Mag)
Length = 226
Score = 30.8 bits (68), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 5/88 (5%)
Query: 10 KTTKYRKPTLKLMVNICGHPLCEGCVDLLFLKGTGNCYECN-QPLRRGNFRVQLFDDSSV 68
KT K+ T K+ V + +G V++ L G Y C+ + + V+L D +
Sbjct: 136 KTLKWEPSTEKMYVEDG---VLKGDVNMRLLLEGGGHYRCDFKTTYKAKKEVRLPDAHKI 192
Query: 69 EKEVEIRKKLLKDYNKVEEDFNSLAEYN 96
+ +EI K KDYNKV+ N++A Y+
Sbjct: 193 DHRIEILKHD-KDYNKVKLYENAVARYS 219
>pdb|2ECW|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Tripartite Motif Protein 30
Length = 85
Score = 28.9 bits (63), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 20/49 (40%), Gaps = 5/49 (10%)
Query: 26 CGHPLCEGCVDLLF-----LKGTGNCYECNQPLRRGNFRVQLFDDSSVE 69
C H C C+ L + G GNC C P GN + L + VE
Sbjct: 37 CNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNLHVANIVE 85
>pdb|1RZ2|A Chain A, 1.6a Crystal Structure Of The Protein Ba4783Q81L49
(SIMILAR TO Sortase B) From Bacillus Anthracis
Length = 254
Score = 26.6 bits (57), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 81 DYNKVEEDFNSLAEYNDYLEEIEE 104
D+ +E DF+S EY +LE+I+E
Sbjct: 188 DFYYIETDFSSDTEYTSFLEKIQE 211
>pdb|3G4D|A Chain A, Crystal Structure Of (+)-Delta-Cadinene Synthase From
Gossypium Arboreum And Evolutionary Divergence Of Metal
Binding Motifs For Catalysis
pdb|3G4D|B Chain B, Crystal Structure Of (+)-Delta-Cadinene Synthase From
Gossypium Arboreum And Evolutionary Divergence Of Metal
Binding Motifs For Catalysis
pdb|3G4F|A Chain A, Crystal Structure Of (+)- -Cadinene Synthase From
Gossypium Arboreum In Complex With 2-Fluorofarnesyl
Diphosphate
pdb|3G4F|B Chain B, Crystal Structure Of (+)- -Cadinene Synthase From
Gossypium Arboreum In Complex With 2-Fluorofarnesyl
Diphosphate
Length = 554
Score = 26.2 bits (56), Expect = 4.7, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 32/74 (43%), Gaps = 13/74 (17%)
Query: 19 LKLMVNICGHPLCEGCVDLLFLKGTGNCYECNQPLRRGNFRVQLFDDSSVEKEVEIRKKL 78
L L V HPL E L Q +RRG RV+ SV +++E K
Sbjct: 182 LSLAVASLDHPLSEEVSHAL-----------KQSIRRGLPRVEARHYLSVYQDIESHNKA 230
Query: 79 LKDYNKVEEDFNSL 92
L ++ K+ DFN L
Sbjct: 231 LLEFAKI--DFNML 242
>pdb|1WEO|A Chain A, Solution Structure Of Ring-Finger In The Catalytic
Subunit (Irx3) Of Cellulose Synthase
Length = 93
Score = 25.8 bits (55), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 19 LKLMVNICGHPLCEGCVDLLFLKGTGNCYECNQPLR--RGNFRV 60
L + N CG P C C + +GT NC +C + RG+ RV
Sbjct: 34 LFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKRLRGSPRV 77
>pdb|2OQW|A Chain A, The Crystal Structure Of Sortase B From B.Anthracis In
Complex With Aaek1
pdb|2OQZ|A Chain A, The Crystal Structure Of Sortase B From B.Anthracis In
Complex With Aaek2
Length = 223
Score = 25.8 bits (55), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 81 DYNKVEEDFNSLAEYNDYLEEIEE 104
D+ +E DF+S EY +LE+I+E
Sbjct: 157 DFYYIETDFSSDTEYTSFLEKIQE 180
>pdb|2ECY|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger)" Domain Of Tnf Receptor-Associated Factor 3
Length = 66
Score = 25.8 bits (55), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 26 CGHPLCEGCVDLLFLKGTGNCYECNQPLRR 55
CGH CE C+ L + C C + + +
Sbjct: 33 CGHRFCESCMAALLSSSSPKCTACQESIVK 62
>pdb|2X0L|A Chain A, Crystal Structure Of A Neuro-Specific Splicing Variant Of
Human Histone Lysine Demethylase Lsd1
Length = 734
Score = 25.8 bits (55), Expect = 7.1, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Query: 48 ECNQPLRRGNFRVQLFDDSSVEKEVEIRKKLLKDYNKVEEDFNSLAEYNDYLEEIEEIVF 107
+ N L + + L++ + V++ K+ KD VE++FN L E YL ++ F
Sbjct: 226 QVNMELAKIKQKCPLYEANGQADTVKVPKE--KD-EMVEQEFNRLLEATSYLS--HQLDF 280
Query: 108 NLCNN 112
N+ NN
Sbjct: 281 NVLNN 285
>pdb|1HV2|A Chain A, Solution Structure Of Yeast Elongin C In Complex With A
Von Hippel-Lindau Peptide
Length = 99
Score = 25.4 bits (54), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 38/96 (39%), Gaps = 29/96 (30%)
Query: 2 DDQECPRCKTTKYRKPTLKLMVNICGHPLCEGCVDLLFLKGTGNCYECNQPLRRGNFRVQ 61
DD+E ++ PTLK M+ EG P R R++
Sbjct: 12 DDKEYEISRSAAMISPTLKAMI--------EG------------------PFRESKGRIE 45
Query: 62 L--FDDSSVEKEVEIRKKLLKDYNKVEEDFNSLAEY 95
L FD +EK VE LK Y+ V ED + + E+
Sbjct: 46 LKQFDSHILEKAVEYLNYNLK-YSGVSEDDDEIPEF 80
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.140 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,804,665
Number of Sequences: 62578
Number of extensions: 151558
Number of successful extensions: 471
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 437
Number of HSP's gapped (non-prelim): 47
length of query: 120
length of database: 14,973,337
effective HSP length: 82
effective length of query: 38
effective length of database: 9,841,941
effective search space: 373993758
effective search space used: 373993758
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)