BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17995
(120 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P51949|MAT1_MOUSE CDK-activating kinase assembly factor MAT1 OS=Mus musculus GN=Mnat1
PE=2 SV=2
Length = 309
Score = 191 bits (486), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 89/120 (74%), Positives = 102/120 (85%)
Query: 1 MDDQECPRCKTTKYRKPTLKLMVNICGHPLCEGCVDLLFLKGTGNCYECNQPLRRGNFRV 60
MDDQ CPRCKTTKYR P+LKLMVN+CGH LCE CVDLLF++G GNC EC PLR+ NFRV
Sbjct: 1 MDDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFRV 60
Query: 61 QLFDDSSVEKEVEIRKKLLKDYNKVEEDFNSLAEYNDYLEEIEEIVFNLCNNIDILETNK 120
QLF+D +V+KEVEIRKK+LK YNK EEDF SL EYND+LEE+EEIVFNL NN+D+ T K
Sbjct: 61 QLFEDPTVDKEVEIRKKVLKIYNKREEDFPSLREYNDFLEEVEEIVFNLTNNVDLENTKK 120
>sp|P51948|MAT1_HUMAN CDK-activating kinase assembly factor MAT1 OS=Homo sapiens GN=MNAT1
PE=1 SV=1
Length = 309
Score = 191 bits (485), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 89/120 (74%), Positives = 102/120 (85%)
Query: 1 MDDQECPRCKTTKYRKPTLKLMVNICGHPLCEGCVDLLFLKGTGNCYECNQPLRRGNFRV 60
MDDQ CPRCKTTKYR P+LKLMVN+CGH LCE CVDLLF++G GNC EC PLR+ NFRV
Sbjct: 1 MDDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFRV 60
Query: 61 QLFDDSSVEKEVEIRKKLLKDYNKVEEDFNSLAEYNDYLEEIEEIVFNLCNNIDILETNK 120
QLF+D +V+KEVEIRKK+LK YNK EEDF SL EYND+LEE+EEIVFNL NN+D+ T K
Sbjct: 61 QLFEDPTVDKEVEIRKKVLKIYNKREEDFPSLREYNDFLEEVEEIVFNLTNNVDLDNTKK 120
>sp|P51951|MAT1_XENLA CDK-activating kinase assembly factor MAT1 OS=Xenopus laevis
GN=mnat1 PE=2 SV=1
Length = 309
Score = 186 bits (471), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 84/120 (70%), Positives = 103/120 (85%)
Query: 1 MDDQECPRCKTTKYRKPTLKLMVNICGHPLCEGCVDLLFLKGTGNCYECNQPLRRGNFRV 60
MDDQ CPRCKTTKYR P+LKLMVN+CGH LCE CV+LLF++G+G+C EC+ PLR+ NF+V
Sbjct: 1 MDDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVELLFVRGSGSCQECDTPLRKSNFKV 60
Query: 61 QLFDDSSVEKEVEIRKKLLKDYNKVEEDFNSLAEYNDYLEEIEEIVFNLCNNIDILETNK 120
QLF+D +++KEVEIRKK+LK YNK EEDF SL EYND+LEEIEEIV NL NN+D+ T +
Sbjct: 61 QLFEDPTIDKEVEIRKKILKIYNKREEDFPSLREYNDFLEEIEEIVLNLTNNVDLDNTRR 120
>sp|P51950|MAT1_MARGL CDK-activating kinase assembly factor MAT1 OS=Marthasterias
glacialis PE=1 SV=1
Length = 324
Score = 171 bits (432), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 74/120 (61%), Positives = 99/120 (82%)
Query: 1 MDDQECPRCKTTKYRKPTLKLMVNICGHPLCEGCVDLLFLKGTGNCYECNQPLRRGNFRV 60
M++Q CPRCK+TKYR P+LKL+VN+CGH LCE CV++LF++G+G+C CN PLRR FRV
Sbjct: 2 MEEQACPRCKSTKYRNPSLKLLVNVCGHTLCENCVEILFVRGSGSCPSCNTPLRRNQFRV 61
Query: 61 QLFDDSSVEKEVEIRKKLLKDYNKVEEDFNSLAEYNDYLEEIEEIVFNLCNNIDILETNK 120
Q F+D+ VEKEV+IRK++LKD+NK EE+F +L +YNDYLEEIE I+FNL N ++ T +
Sbjct: 62 QEFEDAYVEKEVDIRKRILKDFNKQEEEFPALKDYNDYLEEIETIIFNLANGTELEATKR 121
>sp|Q6BP96|TFB3_DEBHA RNA polymerase II transcription factor B subunit 3 OS=Debaryomyces
hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC
0083 / IGC 2968) GN=TFB3 PE=3 SV=2
Length = 340
Score = 114 bits (285), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 57/116 (49%), Positives = 76/116 (65%), Gaps = 3/116 (2%)
Query: 6 CPRCKTTKYRKPTLKLMVNI-CGHPLCEGCVDLLFLKGTGNCY--ECNQPLRRGNFRVQL 62
CP CKT KY P + ++N C H +CE CVD +F G C +C + LR+ F+ Q+
Sbjct: 12 CPICKTDKYLSPNMNFLINPECYHKICESCVDRIFSLGPAPCPYPKCGKILRKNKFKKQI 71
Query: 63 FDDSSVEKEVEIRKKLLKDYNKVEEDFNSLAEYNDYLEEIEEIVFNLCNNIDILET 118
FDD +EKE++IRK++ YNK EEDF+ L +YN YLE +E I+FNL N IDI ET
Sbjct: 72 FDDLGIEKEIDIRKRVSGIYNKTEEDFDDLKDYNKYLESVENIIFNLNNGIDIEET 127
>sp|O94684|TFB3_SCHPO RNA polymerase II transcription factor B subunit 3
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=pmh1 PE=1 SV=1
Length = 318
Score = 114 bits (285), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 53/119 (44%), Positives = 81/119 (68%), Gaps = 3/119 (2%)
Query: 3 DQECPRCKTTKYRKPTLKLMVNI-CGHPLCEGCVDLLFLKGTGNCYE--CNQPLRRGNFR 59
D++CP C+ +Y P +KL++N C H +CE CVD +F G C CN+ LR+ FR
Sbjct: 10 DEKCPLCQADRYLNPNMKLLINPECYHKMCESCVDRIFTTGPAQCPTPGCNKILRKAKFR 69
Query: 60 VQLFDDSSVEKEVEIRKKLLKDYNKVEEDFNSLAEYNDYLEEIEEIVFNLCNNIDILET 118
Q F+D+ +E+EV++RK++ + +NK +++F+SL YNDYLEE+E + FNL ID+ ET
Sbjct: 70 EQTFEDAQIEREVDVRKRISRIFNKGQQEFDSLQAYNDYLEEVEILTFNLIYKIDVEET 128
>sp|Q6FMP4|TFB3_CANGA RNA polymerase II transcription factor B subunit 3 OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=TFB3 PE=3 SV=1
Length = 330
Score = 110 bits (274), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 57/117 (48%), Positives = 77/117 (65%), Gaps = 4/117 (3%)
Query: 6 CPRCKTTKYRKPTLKLMVNI-CGHPLCEGCVDLLFLKGTGNC--YECNQPLRRGNFRVQL 62
CP CKT +Y P ++ +VN C H +CE CVD +F G C C++ LR+ F+ Q+
Sbjct: 23 CPICKTDRYLSPDVRFLVNPECYHKICESCVDRIFSLGPAPCPYKSCDKILRKNKFKTQI 82
Query: 63 FDDSSVEKEVEIRKKLLKDYNKVEEDF-NSLAEYNDYLEEIEEIVFNLCNNIDILET 118
FDD VEKEV+IRK++ +NK EDF N L YN YLEE+E+IV+ L N ID++ET
Sbjct: 83 FDDVGVEKEVDIRKRVFNVFNKTLEDFDNDLEAYNKYLEEVEDIVYKLDNKIDVVET 139
>sp|Q6CT73|TFB3_KLULA RNA polymerase II transcription factor B subunit 3 OS=Kluyveromyces
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC
1267 / NRRL Y-1140 / WM37) GN=TFB3 PE=3 SV=1
Length = 318
Score = 107 bits (266), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 56/117 (47%), Positives = 80/117 (68%), Gaps = 4/117 (3%)
Query: 6 CPRCKTTKYRKPTLKLMVNI-CGHPLCEGCVDLLFLKGTGNC-YE-CNQPLRRGNFRVQL 62
CP CKT +Y P +K ++N C H +CE CVD +F G C YE C++ LRR F+ Q+
Sbjct: 10 CPICKTDRYLSPDMKFLINPECYHKICESCVDRIFSLGPAQCPYEGCDKILRRNKFKTQI 69
Query: 63 FDDSSVEKEVEIRKKLLKDYNKVEEDF-NSLAEYNDYLEEIEEIVFNLCNNIDILET 118
FDD VEKEV+IRK++ +NK EDF N+ +Y+ YLEE+E+I++NL + ID+ +T
Sbjct: 70 FDDVGVEKEVDIRKRVFNVFNKTLEDFDNNQDDYDKYLEEVEDIIYNLDHGIDMEKT 126
>sp|Q03290|TFB3_YEAST RNA polymerase II transcription factor B subunit 3 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=TFB3 PE=1
SV=1
Length = 321
Score = 106 bits (265), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 56/117 (47%), Positives = 79/117 (67%), Gaps = 4/117 (3%)
Query: 6 CPRCKTTKYRKPTLKLMVNI-CGHPLCEGCVDLLFLKGTGNC-YE-CNQPLRRGNFRVQL 62
CP CKT +Y P +K +VN C H +CE CVD +F G C Y+ C++ LR+ F+ Q+
Sbjct: 13 CPICKTDRYLSPDVKFLVNPECYHRICESCVDRIFSLGPAQCPYKGCDKILRKNKFKTQI 72
Query: 63 FDDSSVEKEVEIRKKLLKDYNKVEEDFNS-LAEYNDYLEEIEEIVFNLCNNIDILET 118
FDD VEKEV+IRK++ +NK +DFN L EYN YLEE+E+I++ L + ID+ +T
Sbjct: 73 FDDVEVEKEVDIRKRVFNVFNKTIDDFNGDLVEYNKYLEEVEDIIYKLDHGIDVAKT 129
>sp|Q75D20|TFB3_ASHGO RNA polymerase II transcription factor B subunit 3 OS=Ashbya
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 /
NRRL Y-1056) GN=TFB3 PE=3 SV=1
Length = 318
Score = 104 bits (260), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 58/123 (47%), Positives = 79/123 (64%), Gaps = 8/123 (6%)
Query: 1 MDDQE----CPRCKTTKYRKPTLKLMVNI-CGHPLCEGCVDLLFLKGTGNC-YE-CNQPL 53
MDD E CP CKT +Y P +K +VN C H +CE CVD +F G C YE C++ L
Sbjct: 1 MDDDEKKDMCPICKTDRYLSPDMKFLVNPECYHKICESCVDRIFSLGPAQCPYEGCDKIL 60
Query: 54 RRGNFRVQLFDDSSVEKEVEIRKKLLKDYNKVEEDFNS-LAEYNDYLEEIEEIVFNLCNN 112
R+ F+ Q+F D VE+EV+IRK++ +NK EDF+ A Y+ YLEE+E+IV+ L N
Sbjct: 61 RKNKFKTQIFADVDVEREVDIRKRVFNVFNKTIEDFDGDTAAYDQYLEEVEDIVYGLDNG 120
Query: 113 IDI 115
ID+
Sbjct: 121 IDV 123
>sp|Q6C7D0|TFB3_YARLI RNA polymerase II transcription factor B subunit 3 OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) GN=TFB3 PE=3 SV=1
Length = 346
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 48/109 (44%), Positives = 74/109 (67%), Gaps = 3/109 (2%)
Query: 6 CPRCKTTKYRKPTLKLMVNI-CGHPLCEGCVDLLFLKGTGNCYE--CNQPLRRGNFRVQL 62
CP CK+++Y P +K +VN C H +CE CVD LF G C C + LR+ F+ Q+
Sbjct: 8 CPICKSSRYLNPDMKFLVNPQCYHKMCESCVDRLFAYGPVTCPHNGCEKILRKNKFKTQI 67
Query: 63 FDDSSVEKEVEIRKKLLKDYNKVEEDFNSLAEYNDYLEEIEEIVFNLCN 111
F+D +VEKEV++R++++ NK E++F++L +YN YLE+IE+ +F L N
Sbjct: 68 FEDVAVEKEVDVRQRVMSVMNKREDEFDTLNDYNAYLEKIEDSIFTLLN 116
>sp|P86448|TR43B_MOUSE Tripartite motif-containing protein 43B OS=Mus musculus
GN=Trim43b PE=2 SV=1
Length = 445
Score = 36.6 bits (83), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 35/66 (53%), Gaps = 10/66 (15%)
Query: 26 CGHPLCEGCVDLLF---LKGTGNCYECNQPLRRGNFRVQLFDDSSVEKEVEI-RKKLLKD 81
CGH CE C+ LLF +K C C QP F + +D S++K+V I RKK L +
Sbjct: 31 CGHKFCEACL-LLFQEDIKFPAYCPMCMQP-----FNQEYINDISLKKQVSIVRKKRLME 84
Query: 82 YNKVEE 87
Y EE
Sbjct: 85 YLNSEE 90
>sp|Q5E9G4|TRI10_BOVIN Tripartite motif-containing protein 10 OS=Bos taurus GN=TRIM10
PE=2 SV=1
Length = 489
Score = 35.0 bits (79), Expect = 0.15, Method: Composition-based stats.
Identities = 29/94 (30%), Positives = 43/94 (45%), Gaps = 15/94 (15%)
Query: 2 DDQECPRCKTTKYRKPTLKLMVNICGHPLCEGCVDLLFLKGTG-------NCYECNQPLR 54
D+ CP C+ T T+ CGH C C+ +L+ T C C +P R
Sbjct: 12 DEVNCPVCQGTLREPVTID-----CGHNFCRVCLTR-YLEITSPDPEEPPTCPLCKEPFR 65
Query: 55 RGNFRVQLFDDSSVEKEVEIRKKLLKDYNKVEED 88
GNFR + ++V + +E R KL+ + EED
Sbjct: 66 PGNFRPN-WQLANVVENIE-RLKLVSQMDLDEED 97
>sp|Q9SKJ5|CESAA_ARATH Probable cellulose synthase A catalytic subunit 10 [UDP-forming]
OS=Arabidopsis thaliana GN=CESA10 PE=2 SV=1
Length = 1065
Score = 33.9 bits (76), Expect = 0.32, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 11/67 (16%)
Query: 24 NICGHPLCEGCVDLLFLKGTGNCYECNQPLRRGNFRVQLFDDSSVEKEVEIRKKLLKDYN 83
N CG PLC+ C + G+ C +C RR N ++ D EKE D N
Sbjct: 53 NECGFPLCQSCYEYERKDGSQCCPQCKARFRRHNGSPRVEVD---EKE--------DDVN 101
Query: 84 KVEEDFN 90
+E +F+
Sbjct: 102 DIENEFD 108
>sp|P0CQ64|CWC24_CRYNJ Pre-mRNA-splicing factor CWC24 OS=Cryptococcus neoformans var.
neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=CWC24 PE=3 SV=1
Length = 329
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 15 RKPTLKLMVNICGHPLCEGCVDLLFLKGTGNCYECNQPLR 54
R+P + +V CGH C GC F K + CY C P +
Sbjct: 241 RQPFTQPVVTKCGHYFCMGCAAKRFQK-SPKCYACGAPTQ 279
>sp|P0CQ65|CWC24_CRYNB Pre-mRNA-splicing factor CWC24 OS=Cryptococcus neoformans var.
neoformans serotype D (strain B-3501A) GN=CWC24 PE=3
SV=1
Length = 329
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 15 RKPTLKLMVNICGHPLCEGCVDLLFLKGTGNCYECNQPLR 54
R+P + +V CGH C GC F K + CY C P +
Sbjct: 241 RQPFTQPVVTKCGHYFCMGCAAKRFQK-SPKCYACGAPTQ 279
>sp|Q7YR32|TRI10_PANTR Tripartite motif-containing protein 10 OS=Pan troglodytes
GN=TRIM10 PE=3 SV=1
Length = 481
Score = 33.1 bits (74), Expect = 0.46, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 11/64 (17%)
Query: 2 DDQECPRCKTTKYRKPTLKLMVNICGHPLCEGCVDLLF------LKGTGNCYECNQPLRR 55
D+ CP C+ T T+ CGH C C+ L+ + C C +P R
Sbjct: 12 DEVNCPICQGTLREPVTID-----CGHNFCRACLTRYCEIPGPDLEESPTCPLCKEPFRP 66
Query: 56 GNFR 59
G+FR
Sbjct: 67 GSFR 70
>sp|Q3TL54|TR43A_MOUSE Tripartite motif-containing protein 43A OS=Mus musculus
GN=Trim43a PE=2 SV=1
Length = 445
Score = 33.1 bits (74), Expect = 0.50, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 9/65 (13%)
Query: 26 CGHPLCEGCVDLLF--LKGTGNCYECNQPLRRGNFRVQLFDDSSVEKEVEI--RKKLLKD 81
CGH CE C+ L +K C C QP F + +D S++K+V I +K+L+K
Sbjct: 31 CGHKFCEACLLLSQEDIKFPAYCPMCMQP-----FNQEYINDISLKKQVSIVRKKRLMKY 85
Query: 82 YNKVE 86
N E
Sbjct: 86 LNSKE 90
>sp|Q9UDY6|TRI10_HUMAN Tripartite motif-containing protein 10 OS=Homo sapiens GN=TRIM10
PE=2 SV=3
Length = 481
Score = 33.1 bits (74), Expect = 0.54, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 11/64 (17%)
Query: 2 DDQECPRCKTTKYRKPTLKLMVNICGHPLCEGCVDLLF------LKGTGNCYECNQPLRR 55
D+ CP C+ T T+ CGH C C+ L+ + C C +P R
Sbjct: 12 DEVNCPICQGTLREPVTID-----CGHNFCRACLTRYCEIPGPDLEESPTCPLCKEPFRP 66
Query: 56 GNFR 59
G+FR
Sbjct: 67 GSFR 70
>sp|P86449|TR43C_MOUSE Tripartite motif-containing protein 43C OS=Mus musculus
GN=Trim43c PE=2 SV=1
Length = 446
Score = 32.7 bits (73), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 10/66 (15%)
Query: 26 CGHPLCEGCVDLLF---LKGTGNCYECNQPLRRGNFRVQLFDDSSVEKEVEI-RKKLLKD 81
CGH CE C+ LLF +K C C QP + + +D S++K+V I RKK L +
Sbjct: 31 CGHKFCETCL-LLFQEDIKFPAYCPTCRQPCNQ-----RYINDISLKKQVFIVRKKRLME 84
Query: 82 YNKVEE 87
Y EE
Sbjct: 85 YLNSEE 90
>sp|Q5UPZ3|YR311_MIMIV Putative RING finger protein R311 OS=Acanthamoeba polyphaga
mimivirus GN=MIMI_R311 PE=4 SV=1
Length = 659
Score = 32.3 bits (72), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
Query: 1 MDDQECPRCKTTKYRKPTLKLMVNICGHPLCEGCVDLLFLKGTGNCYECNQPL 53
+ D +CP C Y K L ICGH +C CV L L + C C +P+
Sbjct: 497 IKDNDCPVCYDDDYIKTKL-----ICGHTVCLTCV-LNILPNSKGCPLCMEPI 543
>sp|P15533|TR30A_MOUSE Tripartite motif-containing protein 30A OS=Mus musculus GN=Trim30a
PE=1 SV=2
Length = 496
Score = 32.3 bits (72), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 32/79 (40%), Gaps = 10/79 (12%)
Query: 26 CGHPLCEGCVDLLF-----LKGTGNCYECNQPLRRGNFRVQLFDDSSVEKEVEIRKKLLK 80
C H C C+ L + G GNC C P GN R L + VE R K K
Sbjct: 30 CNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLRPNLHVANIVE-----RLKGFK 84
Query: 81 DYNKVEEDFNSLAEYNDYL 99
+ E+ N A++ + L
Sbjct: 85 SIPEEEQKVNICAQHGEKL 103
>sp|Q9WUH5|TRI10_MOUSE Tripartite motif-containing protein 10 OS=Mus musculus GN=Trim10
PE=2 SV=2
Length = 489
Score = 32.3 bits (72), Expect = 0.85, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 13/65 (20%)
Query: 2 DDQECPRCKTTKYRKPTLKLMVNICGHPLCEGCVDLLFLKGTG-------NCYECNQPLR 54
D+ CP C+ T T+ CGH C GC+ + + G +C C +P R
Sbjct: 12 DEVNCPICQGTLREPVTID-----CGHNFCRGCLT-RYCEIPGPESEESLSCPLCKEPFR 65
Query: 55 RGNFR 59
G+FR
Sbjct: 66 PGSFR 70
>sp|Q69P51|CESA9_ORYSJ Cellulose synthase A catalytic subunit 9 [UDP-forming] OS=Oryza
sativa subsp. japonica GN=CESA9 PE=2 SV=1
Length = 1055
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
Query: 1 MDDQECPRCKTTKYRKPTLKLMV--NICGHPLCEGCVDLLFLKGTGNCYECNQPLRR 55
+ Q C C R L V N CG P+C C + +GT NC +C +R
Sbjct: 32 LSGQVCEICGDEVGRTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYKR 88
>sp|A2Z1C8|CESA9_ORYSI Cellulose synthase A catalytic subunit 9 [UDP-forming] OS=Oryza
sativa subsp. indica GN=CESA9 PE=2 SV=1
Length = 1055
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
Query: 1 MDDQECPRCKTTKYRKPTLKLMV--NICGHPLCEGCVDLLFLKGTGNCYECNQPLRR 55
+ Q C C R L V N CG P+C C + +GT NC +C +R
Sbjct: 32 LSGQVCEICGDEVGRTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYKR 88
>sp|Q88J90|RBSA_PSEPK Ribose import ATP-binding protein RbsA OS=Pseudomonas putida
(strain KT2440) GN=rbsA PE=3 SV=1
Length = 512
Score = 31.6 bits (70), Expect = 1.6, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 37/65 (56%), Gaps = 10/65 (15%)
Query: 59 RVQLFDDSS---VEKEVEIRKKLLKDYNKVEEDFNSLAEYNDYLEEIEEIVFNLCNNIDI 115
RV +FD+ S V++EVE +LL+ ++ +D ++ + YL+EIE LC+ + +
Sbjct: 162 RVLVFDEPSVALVQREVE---RLLRIVQRLRDDGLAIVYISHYLQEIEA----LCDRVTV 214
Query: 116 LETNK 120
L +
Sbjct: 215 LRNGR 219
>sp|Q1MTQ0|BRL1_SCHPO E3 ubiquitin-protein ligase brl1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=brl1 PE=1 SV=1
Length = 692
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Query: 6 CPRCKTTKYRKPTLKLMVNICGHPLCEGCVDLLFLKGTGNCYECNQPL 53
C C + ++ KL+ N CGH C C++ + T C +C P
Sbjct: 639 CSVCNFSNWKS---KLIPN-CGHAFCSNCMEPFYEHKTSTCPQCETPF 682
>sp|Q9SWW6|CESA7_ARATH Cellulose synthase A catalytic subunit 7 [UDP-forming]
OS=Arabidopsis thaliana GN=CESA7 PE=1 SV=1
Length = 1026
Score = 30.8 bits (68), Expect = 2.7, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 24 NICGHPLCEGCVDLLFLKGTGNCYECNQPLRR 55
N CG P C C + +GT NC +C +R
Sbjct: 57 NECGFPACRPCYEYERREGTQNCPQCKTRYKR 88
>sp|Q9FNG6|C3H51_ARATH Zinc finger CCCH domain-containing protein 51 OS=Arabidopsis
thaliana GN=At5g06420 PE=2 SV=1
Length = 378
Score = 30.8 bits (68), Expect = 2.9, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 12/73 (16%)
Query: 15 RKPTLKLMVNICGHPLCEGCVDLLFLKGTGNCYECNQPLRRGNFRVQLFDDSSVEKEVEI 74
R+P L +V C H CE C L C+ CNQP + +F+ + EI
Sbjct: 316 REPFLDPVVTKCKHYFCEHCA-LKHHTKNKKCFVCNQP------TMGIFNAAH-----EI 363
Query: 75 RKKLLKDYNKVEE 87
+K++ ++ +K E+
Sbjct: 364 KKRMAEERSKAEQ 376
>sp|Q8BFW4|TRI65_MOUSE Tripartite motif-containing protein 65 OS=Mus musculus GN=Trim65
PE=2 SV=1
Length = 522
Score = 30.4 bits (67), Expect = 3.0, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 6/45 (13%)
Query: 13 KYRKP-TLKLMVNICGHPLCEGCVDLLFLKGTGNCYECNQPLRRG 56
+YR P TL CGH C C+ + +C EC QP G
Sbjct: 19 RYRDPVTLP-----CGHSFCGNCIQDSWRSCEKSCPECRQPFPEG 58
>sp|Q8LPK5|CESA8_ARATH Cellulose synthase A catalytic subunit 8 [UDP-forming]
OS=Arabidopsis thaliana GN=CESA8 PE=1 SV=1
Length = 985
Score = 30.4 bits (67), Expect = 3.3, Method: Composition-based stats.
Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 5/40 (12%)
Query: 26 CGHPLCEGCVDLLFLKGTGNCYECNQPLRRGNFRVQLFDD 65
C P+C+ C++ F +G C C P + +FDD
Sbjct: 31 CSFPICKACLEYEFKEGRRICLRCGNP-----YDENVFDD 65
>sp|Q851L8|CESA5_ORYSJ Probable cellulose synthase A catalytic subunit 5 [UDP-forming]
OS=Oryza sativa subsp. japonica GN=CESA5 PE=2 SV=1
Length = 1092
Score = 30.4 bits (67), Expect = 3.5, Method: Composition-based stats.
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 24 NICGHPLCEGCVDLLFLKGTGNCYECNQPLRR 55
N C P+C C + +GT NC +C +R
Sbjct: 59 NECAFPVCRDCYEYERREGTQNCPQCKTRFKR 90
>sp|A2XNT2|CESA5_ORYSI Probable cellulose synthase A catalytic subunit 5 [UDP-forming]
OS=Oryza sativa subsp. indica GN=CESA5 PE=2 SV=1
Length = 1092
Score = 30.4 bits (67), Expect = 3.5, Method: Composition-based stats.
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 24 NICGHPLCEGCVDLLFLKGTGNCYECNQPLRR 55
N C P+C C + +GT NC +C +R
Sbjct: 59 NECAFPVCRDCYEYERREGTQNCPQCKTRFKR 90
>sp|Q8GX84|C3H1_ARATH Zinc finger CCCH domain-containing protein 1 OS=Arabidopsis
thaliana GN=At1g01350 PE=2 SV=2
Length = 343
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 12/73 (16%)
Query: 15 RKPTLKLMVNICGHPLCEGCVDLLFLKGTGNCYECNQPLRRGNFRVQLFDDSSVEKEVEI 74
R+P + +V C H CE C L C+ CNQP + +F+ + EI
Sbjct: 281 REPFVDPVVTKCKHYFCEHCA-LKHHTKNKKCFVCNQPT------MGIFNAAH-----EI 328
Query: 75 RKKLLKDYNKVEE 87
+K++ ++ +K E+
Sbjct: 329 KKRMAEERSKAEQ 341
>sp|Q58374|Y964_METJA Uncharacterized protein MJ0964 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ0964 PE=3 SV=1
Length = 680
Score = 30.4 bits (67), Expect = 3.8, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 6/74 (8%)
Query: 47 YECNQPLRRGNFRVQLFDDSSVEKEVEIRKKLLKDYNKVEEDFNSLAEYNDYLEE--IEE 104
YE + + + ++ ++K EI KK KDY V F L Y + + E E
Sbjct: 123 YEVEERIDANGNIITPLNEEELQKIAEIIKK--KDYEVVVISF--LHSYKNPIHEKKARE 178
Query: 105 IVFNLCNNIDILET 118
I+ NLC+N+D++ +
Sbjct: 179 IIKNLCSNVDVITS 192
>sp|Q69V23|CESA3_ORYSJ Probable cellulose synthase A catalytic subunit 3 [UDP-forming]
OS=Oryza sativa subsp. japonica GN=CESA3 PE=2 SV=1
Length = 1093
Score = 30.0 bits (66), Expect = 3.9, Method: Composition-based stats.
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 24 NICGHPLCEGCVDLLFLKGTGNCYECNQPLRR 55
N C P+C C + +GT NC +C +R
Sbjct: 59 NECAFPVCRDCYEYERREGTQNCPQCKTRFKR 90
>sp|O49717|CDPKF_ARATH Calcium-dependent protein kinase 15 OS=Arabidopsis thaliana
GN=CPK15 PE=2 SV=1
Length = 554
Score = 30.0 bits (66), Expect = 4.6, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 43 TGNCYECNQPLRRGNFRVQLFDDSSVEKEVEIRKKLLKDYNKVE 86
TGN Y C L+R R Q DD V++E++I + L N VE
Sbjct: 124 TGNTYACKSILKRKLTRKQDIDD--VKREIQIMQYLSGQENIVE 165
>sp|Q9AV71|CESA7_ORYSJ Cellulose synthase A catalytic subunit 7 [UDP-forming] OS=Oryza
sativa subsp. japonica GN=CESA7 PE=2 SV=1
Length = 1063
Score = 30.0 bits (66), Expect = 5.0, Method: Composition-based stats.
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 26 CGHPLCEGCVDLLFLKGTGNCYECNQPLRR 55
CG P+C+ C + +GT C +CN +R
Sbjct: 40 CGFPVCKPCYEYERSEGTQCCPQCNTRYKR 69
>sp|Q84NC2|MAD31_ORYSJ MADS-box transcription factor 31 OS=Oryza sativa subsp. japonica
GN=MADS31 PE=2 SV=1
Length = 178
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 38/65 (58%), Gaps = 2/65 (3%)
Query: 30 LCEGCVDLLFLKGTGNCYE-CNQPLRRGN-FRVQLFDDSSVEKEVEIRKKLLKDYNKVEE 87
LC+ + ++ GTG YE + P R N F L S+ +E++++++++++ ++++
Sbjct: 38 LCDAQIGVIVFSGTGKMYEYSSPPWRIANIFDRYLKAPSTRFEEMDVQQRIIQEMTRMKD 97
Query: 88 DFNSL 92
+ N L
Sbjct: 98 ENNRL 102
>sp|Q84JA6|CESA4_ARATH Cellulose synthase A catalytic subunit 4 [UDP-forming]
OS=Arabidopsis thaliana GN=CESA4 PE=1 SV=1
Length = 1049
Score = 29.6 bits (65), Expect = 5.9, Method: Composition-based stats.
Identities = 17/79 (21%), Positives = 36/79 (45%), Gaps = 4/79 (5%)
Query: 24 NICGHPLCEGCVDLLFLKGTGNCYECNQPLRRGNFRVQLFDDSSV----EKEVEIRKKLL 79
++C +P+C+ C + G C +CN +R ++ D + + E+ K
Sbjct: 43 HVCVYPVCKPCYEYERSNGNKCCPQCNTLYKRHKGSPKIAGDEENNGPDDSDDELNIKYR 102
Query: 80 KDYNKVEEDFNSLAEYNDY 98
+D + + ++F +E DY
Sbjct: 103 QDGSSIHQNFAYGSENGDY 121
>sp|Q61382|TRAF4_MOUSE TNF receptor-associated factor 4 OS=Mus musculus GN=Traf4 PE=1
SV=2
Length = 470
Score = 29.3 bits (64), Expect = 6.9, Method: Composition-based stats.
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 8/67 (11%)
Query: 6 CPRCKTTKYRKPTLKLMVNICGHPLCEGCVDLLFLKGTGNCYECNQPLRRGNFRVQLFDD 65
CP C R+P + V+ CGH C+ C+ +G C E PL +++ D
Sbjct: 18 CPLCGK-PMREP---VQVSTCGHRFCDTCLQEFLSEGVFKCPEDQLPLDYA----KIYPD 69
Query: 66 SSVEKEV 72
+E +V
Sbjct: 70 PELEVQV 76
>sp|Q58915|Y1520_METJA Uncharacterized protein MJ1520 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ1520 PE=3 SV=1
Length = 387
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 45/106 (42%), Gaps = 23/106 (21%)
Query: 9 CKTTKYRKPTLKLMV---NICGHPL-CEGCVDLLFLKGTGN------------CYECNQP 52
C T +Y K L+V G PL C G + +K GN Y N
Sbjct: 18 CITGEYIKNGRVLIVEEHQSIGVPLQCAGLISKNGVKELGNPKGVVNKVRGAYIYSKNSM 77
Query: 53 LRRGN--FRVQLFDDSSVEKEVEIRKK-----LLKDYNKVEEDFNS 91
++ GN R +F+ ++K++ IR LLK Y K+E+D N
Sbjct: 78 VKIGNEGIRAYIFERKVMDKDIAIRAAKKCDFLLKAYGKIEKDKNG 123
>sp|Q9BUZ4|TRAF4_HUMAN TNF receptor-associated factor 4 OS=Homo sapiens GN=TRAF4 PE=1
SV=1
Length = 470
Score = 29.3 bits (64), Expect = 7.0, Method: Composition-based stats.
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 8/67 (11%)
Query: 6 CPRCKTTKYRKPTLKLMVNICGHPLCEGCVDLLFLKGTGNCYECNQPLRRGNFRVQLFDD 65
CP C R+P + V+ CGH C+ C+ +G C E PL +++ D
Sbjct: 18 CPLCGK-PMREP---VQVSTCGHRFCDTCLQEFLSEGVFKCPEDQLPLDYA----KIYPD 69
Query: 66 SSVEKEV 72
+E +V
Sbjct: 70 PELEVQV 76
>sp|Q8IYM9|TRI22_HUMAN E3 ubiquitin-protein ligase TRIM22 OS=Homo sapiens GN=TRIM22 PE=1
SV=1
Length = 498
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 6/56 (10%)
Query: 26 CGHPLCEGCV------DLLFLKGTGNCYECNQPLRRGNFRVQLFDDSSVEKEVEIR 75
CGH C+ C+ ++ +G +C C + GN R + VE+ E++
Sbjct: 30 CGHSFCQACITAKIKESVIISRGESSCPVCQTRFQPGNLRPNRHLANIVERVKEVK 85
>sp|Q6K4V3|C3H15_ORYSJ Zinc finger CCCH domain-containing protein 15 OS=Oryza sativa
subsp. japonica GN=Os02g0301000 PE=2 SV=1
Length = 326
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 12/67 (17%)
Query: 15 RKPTLKLMVNICGHPLCEGCVDLLFLKGTGNCYECNQPLRRGNFRVQLFDDSSVEKEVEI 74
R+P + +V C H CE C L C+ CN+P + +F+ + EI
Sbjct: 269 REPFVDPVVTKCKHYFCEHCA-LKHHSKNKKCFVCNKPT------LGIFNAAQ-----EI 316
Query: 75 RKKLLKD 81
RKK+ +D
Sbjct: 317 RKKMAQD 323
>sp|Q8E0C9|PEPB_STRA5 Group B oligopeptidase PepB OS=Streptococcus agalactiae serotype V
(strain ATCC BAA-611 / 2603 V/R) GN=pepB PE=3 SV=1
Length = 601
Score = 29.3 bits (64), Expect = 8.3, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 50 NQPLRRGNFRVQLFDDSSVEKEVEIRKKLLKDYNKVEEDFNSLAEYNDYLEEIEEIVF 107
NQP G++ + L + +S E + + LLK+ V++D N A N YL+ + +F
Sbjct: 400 NQPYVYGDYSIFLAEIASTTNENILTETLLKE---VKDDKNRFAILNHYLDGFKGTIF 454
>sp|Q53778|PEPB_STRA3 Group B oligopeptidase PepB OS=Streptococcus agalactiae serotype
III (strain NEM316) GN=pepB PE=3 SV=2
Length = 601
Score = 28.9 bits (63), Expect = 8.5, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 50 NQPLRRGNFRVQLFDDSSVEKEVEIRKKLLKDYNKVEEDFNSLAEYNDYLEEIEEIVF 107
NQP G++ + L + +S E + + LLK+ V++D N A N YL+ + +F
Sbjct: 400 NQPYVYGDYSIFLAEIASTTNENILTETLLKE---VKDDKNRFAILNHYLDGFKGTIF 454
>sp|Q9SRW9|CSLD5_ARATH Cellulose synthase-like protein D5 OS=Arabidopsis thaliana GN=CSLD5
PE=2 SV=1
Length = 1181
Score = 28.9 bits (63), Expect = 9.0, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 14/32 (43%)
Query: 26 CGHPLCEGCVDLLFLKGTGNCYECNQPLRRGN 57
CG +C C G GNC C +P R N
Sbjct: 178 CGFRICRDCYFDCITSGGGNCPGCKEPYRDIN 209
>sp|P84550|SKOR1_HUMAN SKI family transcriptional corepressor 1 OS=Homo sapiens GN=SKOR1
PE=1 SV=1
Length = 965
Score = 28.9 bits (63), Expect = 9.5, Method: Composition-based stats.
Identities = 12/50 (24%), Positives = 31/50 (62%), Gaps = 5/50 (10%)
Query: 70 KEVEIRKKLLKDYNKVEEDFN-----SLAEYNDYLEEIEEIVFNLCNNID 114
+++E+RKKL +++ ++++F LA + +++++ + LCN +D
Sbjct: 871 EQMELRKKLEREFQSLKDNFQDQMKRELAYREEMVQQLQIVRDTLCNELD 920
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.140 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,147,112
Number of Sequences: 539616
Number of extensions: 1978327
Number of successful extensions: 7744
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 98
Number of HSP's that attempted gapping in prelim test: 7635
Number of HSP's gapped (non-prelim): 182
length of query: 120
length of database: 191,569,459
effective HSP length: 87
effective length of query: 33
effective length of database: 144,622,867
effective search space: 4772554611
effective search space used: 4772554611
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)