Query psy17995
Match_columns 120
No_of_seqs 145 out of 1065
Neff 7.1
Searched_HMMs 29240
Date Fri Aug 16 19:36:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17995.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17995hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1g25_A CDK-activating kinase a 99.8 3.2E-19 1.1E-23 108.7 5.0 65 1-65 1-65 (65)
2 3knv_A TNF receptor-associated 99.7 9E-18 3.1E-22 117.3 1.0 95 2-105 30-132 (141)
3 1t1h_A Gspef-atpub14, armadill 99.6 1.6E-15 5.4E-20 95.0 4.5 56 2-62 7-62 (78)
4 3hct_A TNF receptor-associated 99.6 2.8E-16 9.5E-21 106.1 0.7 87 2-101 17-105 (118)
5 1rmd_A RAG1; V(D)J recombinati 99.5 3E-15 1E-19 100.4 4.6 87 3-101 23-111 (116)
6 3hcs_A TNF receptor-associated 99.5 4.9E-15 1.7E-19 105.3 3.0 86 2-100 17-104 (170)
7 2ecy_A TNF receptor-associated 99.5 3E-14 1E-18 86.7 4.8 51 2-57 14-64 (66)
8 3fl2_A E3 ubiquitin-protein li 99.5 1.8E-14 6.2E-19 97.7 3.3 48 3-55 52-99 (124)
9 2egp_A Tripartite motif-contai 99.5 9.9E-15 3.4E-19 91.2 1.8 57 2-63 11-73 (79)
10 3lrq_A E3 ubiquitin-protein li 99.5 1.7E-14 5.7E-19 94.8 2.7 56 3-63 22-78 (100)
11 3ztg_A E3 ubiquitin-protein li 99.5 4.9E-14 1.7E-18 90.7 4.8 53 2-59 12-67 (92)
12 2ecw_A Tripartite motif-contai 99.5 6.6E-14 2.2E-18 88.1 4.7 57 2-63 18-79 (85)
13 1jm7_A BRCA1, breast cancer ty 99.4 1.9E-13 6.6E-18 90.4 6.6 64 3-71 21-86 (112)
14 2ecv_A Tripartite motif-contai 99.4 9.3E-14 3.2E-18 87.4 4.8 57 2-63 18-79 (85)
15 1e4u_A Transcriptional repress 99.4 1.8E-13 6E-18 86.8 5.8 56 2-58 10-65 (78)
16 2kr4_A Ubiquitin conjugation f 99.4 9.7E-14 3.3E-18 89.0 4.6 62 2-73 13-74 (85)
17 2ysl_A Tripartite motif-contai 99.4 1.4E-13 4.7E-18 84.8 4.2 51 2-57 19-71 (73)
18 2kre_A Ubiquitin conjugation f 99.4 9.3E-14 3.2E-18 91.8 3.7 62 2-73 28-89 (100)
19 2y43_A E3 ubiquitin-protein li 99.4 9.1E-14 3.1E-18 90.7 2.9 60 3-68 22-82 (99)
20 1z6u_A NP95-like ring finger p 99.4 1.1E-13 3.7E-18 97.4 3.3 49 3-56 78-126 (150)
21 2c2l_A CHIP, carboxy terminus 99.4 1.6E-13 5.3E-18 102.8 3.3 63 2-73 207-269 (281)
22 2yur_A Retinoblastoma-binding 99.4 3.4E-13 1.2E-17 83.9 4.3 50 2-56 14-65 (74)
23 1wgm_A Ubiquitin conjugation f 99.4 2.7E-13 9.2E-18 89.3 3.9 62 2-73 21-83 (98)
24 1jm7_B BARD1, BRCA1-associated 99.4 3E-13 1E-17 91.0 4.1 60 2-69 21-81 (117)
25 3ng2_A RNF4, snurf, ring finge 99.4 2.8E-13 9.5E-18 82.9 3.6 58 2-61 9-69 (71)
26 2djb_A Polycomb group ring fin 99.4 5E-13 1.7E-17 82.6 4.6 53 2-59 14-66 (72)
27 2xeu_A Ring finger protein 4; 99.3 5.3E-13 1.8E-17 79.9 3.1 57 2-60 2-61 (64)
28 2ckl_A Polycomb group ring fin 99.3 1.3E-12 4.4E-17 86.5 5.1 49 2-56 14-63 (108)
29 2csy_A Zinc finger protein 183 99.3 1.2E-12 4E-17 82.5 4.3 47 2-54 14-60 (81)
30 2ckl_B Ubiquitin ligase protei 99.3 6.6E-13 2.3E-17 93.9 3.3 63 3-73 54-117 (165)
31 4ayc_A E3 ubiquitin-protein li 99.3 4.6E-13 1.6E-17 92.5 2.4 47 3-55 53-99 (138)
32 2ysj_A Tripartite motif-contai 99.3 1.3E-12 4.3E-17 78.6 4.0 43 2-49 19-63 (63)
33 2yu4_A E3 SUMO-protein ligase 99.3 5.3E-13 1.8E-17 86.9 2.5 63 2-73 6-77 (94)
34 2ct2_A Tripartite motif protei 99.3 1.6E-12 5.4E-17 82.5 4.5 55 2-57 14-70 (88)
35 3l11_A E3 ubiquitin-protein li 99.3 2E-13 6.9E-18 91.3 -0.2 47 3-54 15-61 (115)
36 2f42_A STIP1 homology and U-bo 99.3 1.2E-12 4E-17 94.9 3.0 55 2-61 105-159 (179)
37 2ecm_A Ring finger and CHY zin 99.3 2.9E-12 1E-16 74.7 4.1 50 2-53 4-53 (55)
38 2ecj_A Tripartite motif-contai 99.3 3.3E-12 1.1E-16 75.1 4.4 43 2-49 14-58 (58)
39 2d8t_A Dactylidin, ring finger 99.3 6.1E-13 2.1E-17 81.9 1.1 48 2-55 14-61 (71)
40 2ea6_A Ring finger protein 4; 99.3 2E-12 6.7E-17 78.5 3.1 52 2-55 14-68 (69)
41 2ect_A Ring finger protein 126 99.2 6.1E-12 2.1E-16 78.5 4.1 57 2-61 14-70 (78)
42 1bor_A Transcription factor PM 99.2 3.6E-12 1.2E-16 75.5 2.7 45 2-55 5-49 (56)
43 4ap4_A E3 ubiquitin ligase RNF 99.2 4.7E-12 1.6E-16 85.3 2.6 60 2-63 6-68 (133)
44 3htk_C E3 SUMO-protein ligase 99.2 8.4E-12 2.9E-16 95.1 3.2 55 2-61 180-238 (267)
45 1iym_A EL5; ring-H2 finger, ub 99.2 2.7E-11 9.1E-16 70.6 4.1 49 2-53 4-53 (55)
46 1chc_A Equine herpes virus-1 r 99.2 2.1E-11 7.1E-16 74.0 3.7 48 2-54 4-51 (68)
47 2kiz_A E3 ubiquitin-protein li 99.1 8E-11 2.7E-15 71.7 4.7 50 3-55 14-63 (69)
48 2ep4_A Ring finger protein 24; 99.1 6.2E-11 2.1E-15 73.1 4.1 51 2-55 14-64 (74)
49 1v87_A Deltex protein 2; ring- 99.1 6E-11 2.1E-15 78.8 4.3 52 3-55 25-94 (114)
50 1x4j_A Ring finger protein 38; 99.1 3.3E-11 1.1E-15 74.7 2.6 51 2-55 22-72 (75)
51 2ecn_A Ring finger protein 141 99.1 2E-11 6.7E-16 74.6 1.2 48 2-56 14-61 (70)
52 2ecg_A Baculoviral IAP repeat- 99.0 9.5E-11 3.3E-15 73.0 2.6 43 3-55 25-68 (75)
53 4ic3_A E3 ubiquitin-protein li 99.0 5.5E-11 1.9E-15 74.0 1.3 43 3-55 24-67 (74)
54 2l0b_A E3 ubiquitin-protein li 99.0 1.3E-10 4.3E-15 74.9 2.6 49 3-54 40-88 (91)
55 4ap4_A E3 ubiquitin ligase RNF 99.0 1.2E-10 4.2E-15 78.3 2.0 56 2-59 71-129 (133)
56 2ecl_A Ring-box protein 2; RNF 98.9 6.2E-10 2.1E-14 70.3 3.4 52 2-55 14-76 (81)
57 2vje_A E3 ubiquitin-protein li 98.9 5.1E-10 1.7E-14 67.9 2.6 47 2-54 7-56 (64)
58 2y1n_A E3 ubiquitin-protein li 98.9 7.5E-10 2.6E-14 88.4 4.2 48 4-56 333-380 (389)
59 2vje_B MDM4 protein; proto-onc 98.9 6E-10 2E-14 67.4 2.6 48 3-54 7-55 (63)
60 1wim_A KIAA0161 protein; ring 98.9 7.9E-10 2.7E-14 71.4 2.1 49 2-52 4-61 (94)
61 2bay_A PRE-mRNA splicing facto 98.8 1.8E-09 6.1E-14 65.2 2.2 54 3-62 3-57 (61)
62 2yho_A E3 ubiquitin-protein li 98.8 9.8E-10 3.3E-14 69.4 0.9 43 3-55 18-61 (79)
63 2ea5_A Cell growth regulator w 98.8 4.4E-09 1.5E-13 64.6 3.7 44 2-55 14-58 (68)
64 3dpl_R Ring-box protein 1; ubi 98.7 1.7E-08 5.7E-13 67.2 4.8 51 2-54 36-100 (106)
65 3t6p_A Baculoviral IAP repeat- 98.6 9.3E-09 3.2E-13 80.9 1.7 44 2-55 294-338 (345)
66 4a0k_B E3 ubiquitin-protein li 98.4 2.9E-08 1E-12 67.2 0.4 51 2-54 47-111 (117)
67 2d8s_A Cellular modulator of i 98.1 2.3E-06 8E-11 54.0 3.7 49 3-54 15-69 (80)
68 3vk6_A E3 ubiquitin-protein li 98.0 3.7E-06 1.3E-10 55.3 2.7 47 5-55 3-49 (101)
69 2ct0_A Non-SMC element 1 homol 97.8 1.8E-05 6E-10 49.4 3.7 47 4-54 16-63 (74)
70 3k1l_B Fancl; UBC, ring, RWD, 97.3 5.8E-05 2E-09 59.7 1.7 50 4-54 309-372 (381)
71 2jun_A Midline-1; B-BOX, TRIM, 97.3 0.00014 4.6E-09 46.8 2.9 36 1-40 1-38 (101)
72 1weo_A Cellulose synthase, cat 97.1 0.001 3.6E-08 42.7 5.5 52 4-55 17-70 (93)
73 1vyx_A ORF K3, K3RING; zinc-bi 97.0 0.00079 2.7E-08 39.9 4.2 46 4-54 7-58 (60)
74 3nw0_A Non-structural maintena 95.7 0.0073 2.5E-07 44.9 3.5 47 4-54 181-228 (238)
75 2jne_A Hypothetical protein YF 95.0 0.0016 5.6E-08 42.4 -2.0 42 1-54 31-72 (101)
76 2jrp_A Putative cytoplasmic pr 94.9 0.0026 9E-08 40.1 -1.1 41 1-53 1-41 (81)
77 2ko5_A Ring finger protein Z; 94.9 0.016 5.6E-07 37.5 2.6 47 2-55 27-73 (99)
78 3m62_A Ubiquitin conjugation f 92.2 0.11 3.7E-06 45.7 3.8 54 2-61 890-944 (968)
79 2ct7_A Ring finger protein 31; 91.6 0.068 2.3E-06 33.4 1.5 31 6-36 28-59 (86)
80 6rxn_A Rubredoxin; electron tr 89.6 0.13 4.6E-06 28.8 1.4 36 1-52 2-39 (46)
81 2jmo_A Parkin; IBR, E3 ligase, 89.2 0.25 8.4E-06 30.5 2.5 34 4-37 26-67 (80)
82 2a20_A Regulating synaptic mem 86.9 0.27 9.2E-06 29.1 1.5 37 2-54 8-44 (62)
83 1vfy_A Phosphatidylinositol-3- 86.1 0.53 1.8E-05 28.4 2.6 35 2-37 10-44 (73)
84 4rxn_A Rubredoxin; electron tr 83.4 0.63 2.2E-05 26.8 2.0 41 1-52 1-45 (54)
85 3i2d_A E3 SUMO-protein ligase 83.2 0.65 2.2E-05 36.7 2.6 51 4-58 250-303 (371)
86 2cs3_A Protein C14ORF4, MY039 81.7 1.9 6.6E-05 27.1 3.8 36 3-41 15-52 (93)
87 4fo9_A E3 SUMO-protein ligase 81.5 0.84 2.9E-05 35.9 2.6 51 4-58 216-269 (360)
88 1joc_A EEA1, early endosomal a 81.3 0.82 2.8E-05 30.5 2.2 33 4-37 70-102 (125)
89 1wil_A KIAA1045 protein; ring 80.0 2.6 8.8E-05 26.6 4.0 33 3-38 15-47 (89)
90 1z60_A TFIIH basal transcripti 79.3 1.3 4.5E-05 25.9 2.4 43 5-50 17-59 (59)
91 2lbm_A Transcriptional regulat 78.2 2 7E-05 29.4 3.4 42 4-51 64-116 (142)
92 1dvp_A HRS, hepatocyte growth 78.1 1.1 3.7E-05 32.4 2.1 35 2-37 160-194 (220)
93 1l8d_A DNA double-strand break 78.0 2.1 7.3E-05 27.3 3.4 12 43-54 47-58 (112)
94 2gmg_A Hypothetical protein PF 77.0 0.77 2.6E-05 30.1 0.9 24 24-53 71-94 (105)
95 2k5c_A Uncharacterized protein 76.6 0.46 1.6E-05 30.0 -0.2 14 44-57 9-22 (95)
96 1z2q_A LM5-1; membrane protein 76.4 1.7 5.7E-05 26.8 2.4 33 4-37 22-54 (84)
97 3zyq_A Hepatocyte growth facto 75.7 1.4 4.8E-05 32.1 2.2 35 2-37 163-197 (226)
98 3t7l_A Zinc finger FYVE domain 75.3 1.7 5.7E-05 27.2 2.2 34 4-38 21-54 (90)
99 1pft_A TFIIB, PFTFIIBN; N-term 75.2 1.3 4.5E-05 24.5 1.5 14 4-17 6-20 (50)
100 1wd2_A Ariadne-1 protein homol 75.0 1.3 4.5E-05 25.8 1.5 13 4-16 7-19 (60)
101 2xqn_T Testin, TESS; metal-bin 74.8 1.7 5.8E-05 28.1 2.2 46 4-56 31-76 (126)
102 2yw8_A RUN and FYVE domain-con 74.6 1.8 6.2E-05 26.5 2.2 33 4-37 20-52 (82)
103 3mpx_A FYVE, rhogef and PH dom 72.7 0.73 2.5E-05 35.9 0.0 50 4-54 376-431 (434)
104 2zet_C Melanophilin; complex, 72.5 1.9 6.6E-05 29.8 2.1 31 3-35 68-100 (153)
105 1x4u_A Zinc finger, FYVE domai 72.1 2.2 7.5E-05 26.2 2.1 33 4-37 15-47 (84)
106 1y02_A CARP2, FYVE-ring finger 71.1 1.7 5.9E-05 28.9 1.6 46 4-51 20-65 (120)
107 2xjy_A Rhombotin-2; oncoprotei 70.3 3 0.0001 27.0 2.6 49 4-55 30-78 (131)
108 2v3b_B Rubredoxin 2, rubredoxi 70.3 0.99 3.4E-05 26.0 0.2 14 1-15 1-14 (55)
109 1wfk_A Zinc finger, FYVE domai 69.7 2.1 7.3E-05 26.7 1.7 33 4-37 10-42 (88)
110 2cup_A Skeletal muscle LIM-pro 69.7 2.1 7.1E-05 26.5 1.6 46 4-56 34-79 (101)
111 1zbd_B Rabphilin-3A; G protein 69.1 2 7E-05 29.0 1.6 32 3-35 55-87 (134)
112 3ql9_A Transcriptional regulat 68.3 4.8 0.00016 27.1 3.3 41 5-51 59-110 (129)
113 2apo_B Ribosome biogenesis pro 64.7 10 0.00035 22.1 3.9 31 44-74 19-49 (60)
114 2jny_A Uncharacterized BCR; st 64.1 2.5 8.7E-05 25.3 1.1 12 2-13 9-20 (67)
115 1dx8_A Rubredoxin; electron tr 63.8 1.8 6E-05 26.2 0.4 14 1-15 5-18 (70)
116 2jr6_A UPF0434 protein NMA0874 63.2 2.8 9.4E-05 25.1 1.2 11 2-12 7-17 (68)
117 1m3v_A FLIN4, fusion of the LI 62.5 5 0.00017 25.9 2.5 51 4-57 33-83 (122)
118 2pk7_A Uncharacterized protein 62.3 2.8 9.6E-05 25.2 1.1 12 2-13 7-18 (69)
119 2rgt_A Fusion of LIM/homeobox 60.6 9.9 0.00034 25.8 3.9 44 4-55 34-77 (169)
120 2js4_A UPF0434 protein BB2007; 59.6 3.2 0.00011 25.0 1.0 11 2-12 7-17 (70)
121 2lcq_A Putative toxin VAPC6; P 58.9 2.3 7.8E-05 29.1 0.3 24 25-55 137-160 (165)
122 2lri_C Autoimmune regulator; Z 57.7 11 0.00037 22.1 3.2 45 3-53 12-60 (66)
123 1iml_A CRIP, cysteine rich int 56.4 8 0.00027 22.5 2.5 43 4-53 28-71 (76)
124 2m0e_A Zinc finger and BTB dom 55.9 6.9 0.00024 17.0 1.7 13 43-55 2-14 (29)
125 2jtn_A LIM domain-binding prot 55.4 11 0.00037 25.9 3.4 45 4-56 88-132 (182)
126 1b8t_A Protein (CRP1); LIM dom 55.4 8.6 0.00029 26.7 2.9 34 4-41 35-68 (192)
127 3h0g_L DNA-directed RNA polyme 54.8 10 0.00035 22.4 2.7 23 25-53 26-48 (63)
128 2kn9_A Rubredoxin; metalloprot 54.3 2.1 7E-05 26.7 -0.5 14 1-15 25-38 (81)
129 1vq8_Z 50S ribosomal protein L 52.1 2.8 9.5E-05 26.1 -0.2 19 44-62 46-64 (83)
130 2kpi_A Uncharacterized protein 51.8 6.3 0.00021 22.6 1.4 11 2-12 9-19 (56)
131 1ard_A Yeast transcription fac 51.5 7.2 0.00025 17.1 1.4 13 43-55 2-14 (29)
132 2hf1_A Tetraacyldisaccharide-1 51.5 2.8 9.5E-05 25.1 -0.2 21 43-63 26-46 (68)
133 1f62_A Transcription factor WS 51.2 12 0.00042 20.2 2.6 44 5-51 2-49 (51)
134 1znf_A 31ST zinc finger from X 49.2 8 0.00028 16.6 1.3 12 44-55 2-13 (27)
135 2ds5_A CLPX, ATP-dependent CLP 49.1 22 0.00076 19.9 3.4 34 3-39 11-44 (51)
136 2lvu_A Zinc finger and BTB dom 54.2 3.7 0.00013 17.9 0.0 12 44-55 3-14 (26)
137 2kdx_A HYPA, hydrogenase/ureas 48.4 7.5 0.00026 25.2 1.5 22 25-53 78-100 (119)
138 1klr_A Zinc finger Y-chromosom 48.3 10 0.00035 16.5 1.6 13 43-55 2-14 (30)
139 2yt5_A Metal-response element- 48.3 2.4 8.1E-05 24.6 -0.9 50 2-52 5-61 (66)
140 1rut_X Flinc4, fusion protein 47.9 6.5 0.00022 27.3 1.2 49 4-55 33-81 (188)
141 2cu8_A Cysteine-rich protein 2 47.7 12 0.0004 21.7 2.2 42 4-58 10-51 (76)
142 1paa_A Yeast transcription fac 47.6 9.6 0.00033 16.8 1.5 13 43-55 2-14 (30)
143 3gox_A Restriction endonucleas 47.3 10 0.00035 27.4 2.1 47 5-54 77-148 (200)
144 3pwf_A Rubrerythrin; non heme 45.3 7.8 0.00027 27.0 1.3 21 24-52 142-162 (170)
145 2aus_D NOP10, ribosome biogene 45.0 24 0.00083 20.5 3.2 33 44-76 18-50 (60)
146 1x61_A Thyroid receptor intera 44.8 24 0.00081 20.0 3.2 44 3-58 5-48 (72)
147 2l43_A N-teminal domain from h 44.4 4.4 0.00015 25.2 -0.1 54 2-56 24-79 (88)
148 2ctu_A Zinc finger protein 483 44.1 5.7 0.00019 21.9 0.3 14 42-55 38-51 (73)
149 2m0f_A Zinc finger and BTB dom 44.0 6.6 0.00023 17.1 0.5 12 43-54 2-13 (29)
150 1p7a_A BF3, BKLF, kruppel-like 43.4 11 0.00037 17.8 1.3 13 43-55 11-23 (37)
151 1s24_A Rubredoxin 2; electron 43.3 4 0.00014 25.7 -0.4 13 1-14 33-45 (87)
152 1lko_A Rubrerythrin all-iron(I 43.2 7.1 0.00024 27.5 0.8 22 24-52 159-180 (191)
153 2co8_A NEDD9 interacting prote 43.0 22 0.00076 21.0 3.0 42 4-58 16-57 (82)
154 4ayb_P DNA-directed RNA polyme 43.0 22 0.00075 19.8 2.6 11 43-53 23-33 (48)
155 3a1b_A DNA (cytosine-5)-methyl 42.9 6.1 0.00021 27.6 0.4 27 25-51 98-133 (159)
156 2d8x_A Protein pinch; LIM doma 42.3 21 0.00072 20.1 2.7 42 4-59 6-47 (70)
157 1rik_A E6APC1 peptide; E6-bind 42.2 7.5 0.00026 17.0 0.6 12 44-55 3-14 (29)
158 3ghg_A Fibrinogen alpha chain; 42.2 42 0.0014 27.7 5.3 40 68-107 150-190 (562)
159 3j20_W 30S ribosomal protein S 42.0 7 0.00024 23.2 0.5 9 45-53 36-44 (63)
160 2kvh_A Zinc finger and BTB dom 41.5 8.3 0.00028 16.8 0.7 13 43-55 3-15 (27)
161 1zfo_A LAsp-1; LIM domain, zin 41.4 20 0.00069 17.6 2.2 26 5-34 5-30 (31)
162 1qxf_A GR2, 30S ribosomal prot 41.2 6.3 0.00022 23.6 0.2 8 4-11 8-15 (66)
163 2jvx_A NF-kappa-B essential mo 41.1 6.5 0.00022 19.5 0.2 9 3-11 3-11 (28)
164 1wyh_A SLIM 2, skeletal muscle 40.8 20 0.0007 20.2 2.5 43 4-58 6-48 (72)
165 2ysm_A Myeloid/lymphoid or mix 40.8 9.7 0.00033 24.2 1.1 45 3-50 7-55 (111)
166 1nyp_A Pinch protein; LIM doma 40.6 18 0.00061 20.2 2.2 42 3-58 5-46 (66)
167 1ovx_A ATP-dependent CLP prote 40.5 28 0.00095 20.7 3.0 35 3-40 18-52 (67)
168 1yuz_A Nigerythrin; rubrythrin 40.4 9.9 0.00034 27.1 1.2 21 24-52 175-195 (202)
169 2pv0_B DNA (cytosine-5)-methyl 39.9 15 0.00053 29.0 2.3 28 25-52 112-148 (386)
170 3u5c_b RP61, YS20, 40S ribosom 39.5 11 0.00036 23.5 1.1 10 44-53 54-63 (82)
171 2kvf_A Zinc finger and BTB dom 39.4 8.7 0.0003 16.7 0.6 13 43-55 3-15 (28)
172 1rim_A E6APC2 peptide; E6-bind 39.3 16 0.00053 17.0 1.5 13 43-55 2-14 (33)
173 2k16_A Transcription initiatio 39.3 6.4 0.00022 23.3 0.0 49 4-55 19-71 (75)
174 2lvt_A Zinc finger and BTB dom 45.2 6.4 0.00022 17.4 0.0 12 44-55 3-14 (29)
175 2ro1_A Transcription intermedi 38.8 12 0.00041 26.3 1.4 45 3-53 2-50 (189)
176 1twf_L ABC10-alpha, DNA-direct 38.7 16 0.00054 21.9 1.7 21 25-51 33-53 (70)
177 2xzm_6 RPS27E; ribosome, trans 38.5 8.5 0.00029 23.9 0.5 9 45-53 53-61 (81)
178 1mm2_A MI2-beta; PHD, zinc fin 38.3 13 0.00046 21.2 1.4 46 3-54 9-58 (61)
179 2elr_A Zinc finger protein 406 38.3 14 0.00049 17.1 1.3 13 43-55 9-21 (36)
180 2e6r_A Jumonji/ARID domain-con 37.2 3.4 0.00012 25.9 -1.5 48 1-51 14-65 (92)
181 2lvr_A Zinc finger and BTB dom 43.2 7.2 0.00025 17.2 0.0 13 43-55 3-15 (30)
182 3iz6_X 40S ribosomal protein S 36.9 13 0.00045 23.3 1.2 10 44-53 56-65 (86)
183 1wff_A Riken cDNA 2810002D23 p 36.6 16 0.00055 22.8 1.6 26 4-33 26-52 (85)
184 2cr8_A MDM4 protein; ZF-ranbp 36.3 15 0.00052 20.8 1.3 23 2-35 10-32 (53)
185 1erd_A Pheromone ER-2; NMR {Eu 36.0 4.8 0.00016 21.0 -0.8 27 24-50 10-38 (40)
186 3mjh_B Early endosome antigen 36.0 7.9 0.00027 20.0 0.1 13 4-17 6-18 (34)
187 1wig_A KIAA1808 protein; LIM d 35.8 51 0.0017 18.8 3.8 37 4-54 6-42 (73)
188 2fiy_A Protein FDHE homolog; F 35.6 4.9 0.00017 30.8 -1.1 45 3-52 182-231 (309)
189 2d8z_A Four and A half LIM dom 35.6 31 0.0011 19.3 2.7 9 5-13 7-15 (70)
190 3epz_A DNA (cytosine-5)-methyl 35.5 31 0.0011 25.9 3.3 50 42-91 17-66 (268)
191 3vhs_A ATPase wrnip1; zinc fin 35.5 10 0.00034 18.6 0.4 11 44-54 7-17 (29)
192 2cor_A Pinch protein; LIM doma 35.0 48 0.0016 19.3 3.6 39 4-56 16-54 (79)
193 3o36_A Transcription intermedi 34.9 12 0.00041 25.9 0.9 45 3-53 4-52 (184)
194 1x4l_A Skeletal muscle LIM-pro 34.8 23 0.00079 20.1 2.1 44 4-59 6-51 (72)
195 2ku3_A Bromodomain-containing 34.7 13 0.00043 22.2 0.9 49 2-51 15-65 (71)
196 2kvg_A Zinc finger and BTB dom 34.6 7.1 0.00024 17.2 -0.3 13 43-55 3-15 (27)
197 2ely_A Zinc finger protein 224 34.5 21 0.00072 17.8 1.7 14 43-56 12-25 (46)
198 2elp_A Zinc finger protein 406 34.4 12 0.0004 17.7 0.6 13 43-55 9-21 (37)
199 1g47_A Pinch protein; LIM doma 34.3 25 0.00084 20.1 2.2 43 4-58 12-54 (77)
200 2kfq_A FP1; protein, de novo p 34.2 15 0.00052 16.9 1.0 12 43-54 2-13 (32)
201 3v43_A Histone acetyltransfera 33.7 16 0.00053 23.4 1.2 45 5-51 63-111 (112)
202 2csz_A Synaptotagmin-like prot 33.7 21 0.00071 21.8 1.7 44 4-51 26-72 (76)
203 1wfh_A Zinc finger (AN1-like) 33.6 21 0.00071 21.1 1.7 26 4-33 16-41 (64)
204 2c6a_A Ubiquitin-protein ligas 32.9 15 0.00052 20.3 0.9 9 3-11 13-21 (46)
205 1x64_A Alpha-actinin-2 associa 32.7 42 0.0014 19.9 3.1 41 4-58 26-66 (89)
206 2ytb_A Zinc finger protein 32; 32.5 20 0.00068 17.3 1.3 13 43-55 11-23 (42)
207 2m0d_A Zinc finger and BTB dom 32.5 13 0.00044 16.1 0.5 12 43-54 3-14 (30)
208 2l5u_A Chromodomain-helicase-D 32.4 23 0.00078 20.1 1.7 43 3-51 11-57 (61)
209 1lv3_A Hypothetical protein YA 32.4 12 0.0004 22.5 0.4 11 44-54 10-20 (68)
210 4g9i_A Hydrogenase maturation 32.3 23 0.00077 30.4 2.3 52 2-54 105-189 (772)
211 2d8y_A Eplin protein; LIM doma 32.1 40 0.0014 20.1 2.9 42 4-58 16-57 (91)
212 2cur_A Skeletal muscle LIM-pro 32.0 39 0.0013 18.9 2.7 41 4-58 6-46 (69)
213 3u5n_A E3 ubiquitin-protein li 32.0 10 0.00034 26.9 0.1 44 4-53 8-55 (207)
214 2en7_A Zinc finger protein 268 31.8 22 0.00074 17.4 1.4 13 43-55 12-24 (44)
215 2dar_A PDZ and LIM domain prot 31.7 40 0.0014 20.1 2.9 13 46-58 54-66 (90)
216 2eos_A B-cell lymphoma 6 prote 31.6 23 0.00078 17.2 1.5 13 43-55 11-23 (42)
217 2yte_A Zinc finger protein 473 31.5 21 0.00072 17.2 1.3 13 43-55 10-22 (42)
218 2elx_A Zinc finger protein 406 31.3 13 0.00044 17.1 0.4 13 43-55 7-19 (35)
219 2cuq_A Four and A half LIM dom 31.2 41 0.0014 19.3 2.8 14 44-57 42-55 (80)
220 3vth_A Hydrogenase maturation 31.1 23 0.00078 30.3 2.1 51 2-53 110-193 (761)
221 2enh_A Zinc finger protein 28 30.7 23 0.00079 17.6 1.4 14 43-56 12-25 (46)
222 1a7i_A QCRP2 (LIM1); LIM domai 30.5 16 0.00053 21.4 0.8 42 4-58 8-49 (81)
223 1v6g_A Actin binding LIM prote 30.5 38 0.0013 19.7 2.6 39 5-57 17-55 (81)
224 2elq_A Zinc finger protein 406 30.3 14 0.00047 17.3 0.4 13 43-55 9-21 (36)
225 1e8j_A Rubredoxin; iron-sulfur 30.3 19 0.00064 20.2 1.0 13 1-14 1-13 (52)
226 2elt_A Zinc finger protein 406 30.3 14 0.00048 17.1 0.5 13 43-55 9-21 (36)
227 2els_A Zinc finger protein 406 30.2 13 0.00046 17.3 0.4 13 43-55 9-21 (36)
228 2eov_A Zinc finger protein 484 29.9 26 0.0009 17.3 1.6 13 43-55 12-24 (46)
229 2enf_A Zinc finger protein 347 29.8 24 0.00084 17.4 1.4 13 43-55 12-24 (46)
230 2yti_A Zinc finger protein 347 29.5 26 0.00089 17.3 1.5 13 43-55 12-24 (46)
231 3lqh_A Histone-lysine N-methyl 29.2 15 0.00052 25.9 0.6 49 4-53 3-64 (183)
232 1x6a_A LIMK-2, LIM domain kina 28.9 42 0.0014 19.4 2.6 37 5-55 17-53 (81)
233 2eq2_A Zinc finger protein 347 28.6 28 0.00095 17.2 1.5 13 43-55 12-24 (46)
234 2eon_A ZFP-95, zinc finger pro 28.4 27 0.00091 17.4 1.4 13 43-55 12-24 (46)
235 1wfp_A Zinc finger (AN1-like) 28.2 28 0.00095 21.2 1.6 26 4-33 26-51 (74)
236 2dlo_A Thyroid receptor-intera 28.1 35 0.0012 19.8 2.1 15 44-58 42-56 (81)
237 2yth_A Zinc finger protein 224 28.0 27 0.00094 17.3 1.4 13 43-55 12-24 (46)
238 2eoh_A Zinc finger protein 28 28.0 28 0.00097 17.2 1.5 13 43-55 12-24 (46)
239 2eoq_A Zinc finger protein 224 27.9 29 0.00098 17.2 1.5 13 43-55 12-24 (46)
240 2elv_A Zinc finger protein 406 27.9 17 0.00057 17.0 0.5 13 43-55 9-21 (36)
241 1wfl_A Zinc finger protein 216 27.9 26 0.0009 21.3 1.5 26 4-33 26-51 (74)
242 2ehe_A Four and A half LIM dom 27.9 61 0.0021 18.7 3.2 14 44-57 44-57 (82)
243 2kwj_A Zinc finger protein DPF 27.8 28 0.00094 22.3 1.7 45 5-49 3-58 (114)
244 2d9k_A FLN29 gene product; zin 27.8 29 0.00098 20.0 1.6 34 25-58 22-58 (75)
245 1dl6_A Transcription factor II 27.7 27 0.00092 19.8 1.4 11 44-54 31-41 (58)
246 1gh9_A 8.3 kDa protein (gene M 27.7 31 0.0011 20.6 1.7 16 43-59 21-36 (71)
247 2ytr_A Zinc finger protein 347 27.7 30 0.001 17.0 1.6 13 43-55 12-24 (46)
248 2elo_A Zinc finger protein 406 27.6 15 0.00052 17.2 0.3 13 43-55 9-21 (37)
249 2eou_A Zinc finger protein 473 27.6 29 0.00098 17.0 1.5 13 43-55 12-24 (44)
250 2ep1_A Zinc finger protein 484 27.6 30 0.001 17.0 1.5 13 43-55 12-24 (46)
251 2em6_A Zinc finger protein 224 27.6 29 0.00099 17.2 1.5 13 43-55 12-24 (46)
252 1we9_A PHD finger family prote 27.6 14 0.00047 21.1 0.1 48 3-52 6-58 (64)
253 1srk_A Zinc finger protein ZFP 27.5 17 0.00058 16.7 0.5 13 43-55 7-19 (35)
254 2epx_A Zinc finger protein 28 27.5 31 0.0011 17.0 1.6 13 43-55 12-24 (47)
255 1x62_A C-terminal LIM domain p 27.4 53 0.0018 19.0 2.8 38 4-55 16-53 (79)
256 2eq1_A Zinc finger protein 347 27.4 29 0.00099 17.1 1.5 13 43-55 12-24 (46)
257 1fv5_A First zinc finger of U- 27.3 17 0.00057 18.4 0.4 13 43-55 8-20 (36)
258 3f2b_A DNA-directed DNA polyme 27.3 22 0.00077 31.6 1.5 15 43-57 527-541 (1041)
259 2emg_A Zinc finger protein 484 27.1 28 0.00094 17.2 1.3 13 43-55 12-24 (46)
260 1x3h_A Leupaxin; paxillin fami 27.1 43 0.0015 19.2 2.4 15 44-58 42-56 (80)
261 2puy_A PHD finger protein 21A; 26.8 5.2 0.00018 22.8 -1.9 46 2-53 4-53 (60)
262 1wg2_A Zinc finger (AN1-like) 26.7 39 0.0013 19.9 2.1 26 4-33 16-41 (64)
263 2emz_A ZFP-95, zinc finger pro 26.7 31 0.0011 17.1 1.5 13 43-55 12-24 (46)
264 1fzc_A Fibrin; blood coagulati 26.6 54 0.0018 20.4 2.7 48 60-107 32-80 (87)
265 2em0_A Zinc finger protein 224 26.6 32 0.0011 16.9 1.5 13 43-55 12-24 (46)
266 2emk_A Zinc finger protein 28 26.5 30 0.001 17.1 1.4 13 43-55 12-24 (46)
267 3f6q_B LIM and senescent cell 26.5 35 0.0012 19.0 1.8 43 4-58 12-54 (72)
268 2en9_A Zinc finger protein 28 25.9 31 0.001 17.1 1.4 13 43-55 12-24 (46)
269 2elz_A Zinc finger protein 224 25.9 31 0.0011 17.0 1.4 13 43-55 12-24 (46)
270 2eop_A Zinc finger protein 268 25.8 30 0.001 17.0 1.3 13 43-55 12-24 (46)
271 2eom_A ZFP-95, zinc finger pro 25.8 33 0.0011 17.0 1.5 13 43-55 12-24 (46)
272 2e72_A POGO transposable eleme 25.8 31 0.0011 19.2 1.4 12 43-54 12-23 (49)
273 1x4k_A Skeletal muscle LIM-pro 25.8 38 0.0013 19.0 1.9 42 5-58 7-48 (72)
274 2yu5_A Zinc finger protein 473 25.8 20 0.00067 17.6 0.6 13 43-55 12-24 (44)
275 3ask_A E3 ubiquitin-protein li 25.7 22 0.00074 26.1 1.0 44 5-51 176-224 (226)
276 2dj7_A Actin-binding LIM prote 25.7 46 0.0016 19.5 2.3 38 4-54 16-53 (80)
277 2ytn_A Zinc finger protein 347 25.3 31 0.0011 17.0 1.3 13 43-55 12-24 (46)
278 2eq4_A Zinc finger protein 224 25.2 31 0.0011 16.9 1.3 13 43-55 12-24 (46)
279 2eoy_A Zinc finger protein 473 25.0 21 0.00072 17.8 0.6 13 43-55 12-24 (46)
280 2o35_A Hypothetical protein DU 24.9 31 0.0011 22.2 1.5 13 29-41 42-54 (105)
281 2el5_A Zinc finger protein 268 24.9 21 0.00073 17.2 0.6 13 43-55 10-22 (42)
282 3fyb_A Protein of unknown func 24.8 32 0.0011 22.2 1.5 13 29-41 41-53 (104)
283 1x68_A FHL5 protein; four-and- 24.5 42 0.0014 19.2 1.9 41 4-56 6-48 (76)
284 2epz_A Zinc finger protein 28 24.5 33 0.0011 16.9 1.3 13 43-55 12-24 (46)
285 1x63_A Skeletal muscle LIM-pro 24.5 50 0.0017 19.0 2.3 44 4-59 16-59 (82)
286 2epc_A Zinc finger protein 32; 24.3 21 0.00072 17.2 0.5 13 43-55 11-23 (42)
287 2iyb_E Testin, TESS, TES; LIM 24.3 27 0.00093 19.5 1.0 42 5-58 4-47 (65)
288 2ytq_A Zinc finger protein 268 24.3 35 0.0012 16.9 1.4 13 43-55 12-24 (46)
289 2ytm_A Zinc finger protein 28 24.3 34 0.0012 17.0 1.4 13 43-55 12-24 (46)
290 2epw_A Zinc finger protein 268 23.9 22 0.00075 17.6 0.5 14 43-56 12-25 (46)
291 2ytt_A Zinc finger protein 473 23.8 38 0.0013 16.7 1.5 13 43-55 12-24 (46)
292 2yrm_A B-cell lymphoma 6 prote 23.6 38 0.0013 16.5 1.5 13 43-55 10-22 (43)
293 2ctd_A Zinc finger protein 512 23.6 86 0.003 18.7 3.4 12 43-54 62-73 (96)
294 2ept_A Zinc finger protein 32; 23.5 22 0.00076 17.1 0.5 13 43-55 10-22 (41)
295 1wev_A Riken cDNA 1110020M19; 23.2 8.5 0.00029 23.8 -1.5 51 3-54 16-74 (88)
296 3ga8_A HTH-type transcriptiona 23.2 15 0.0005 21.9 -0.3 10 43-52 2-11 (78)
297 2k5r_A Uncharacterized protein 23.1 29 0.001 22.1 1.1 12 1-12 6-17 (97)
298 2elm_A Zinc finger protein 406 23.1 15 0.00053 17.4 -0.2 13 43-55 9-21 (37)
299 2akl_A PHNA-like protein PA012 23.0 30 0.001 23.4 1.2 25 4-30 28-54 (138)
300 1njq_A Superman protein; zinc- 22.8 22 0.00074 17.0 0.3 13 43-55 6-18 (39)
301 2en3_A ZFP-95, zinc finger pro 22.6 24 0.00083 17.5 0.5 13 43-55 12-24 (46)
302 3o9x_A Uncharacterized HTH-typ 22.6 28 0.00097 22.1 1.0 10 43-52 2-11 (133)
303 2eoj_A Zinc finger protein 268 22.5 21 0.00072 17.5 0.2 13 43-55 12-24 (44)
304 2eps_A POZ-, at HOOK-, and zin 22.4 45 0.0016 17.3 1.7 12 43-54 41-52 (54)
305 2yu8_A Zinc finger protein 347 22.4 25 0.00084 17.4 0.5 13 43-55 12-24 (46)
306 1vd4_A Transcription initiatio 22.1 46 0.0016 17.9 1.7 14 43-56 39-52 (62)
307 2ytg_A ZFP-95, zinc finger pro 21.9 24 0.00082 17.5 0.4 14 43-56 12-25 (46)
308 2yts_A Zinc finger protein 484 21.9 24 0.00083 17.4 0.4 13 43-55 12-24 (46)
309 1xwh_A Autoimmune regulator; P 21.6 15 0.00051 21.2 -0.5 44 3-52 8-55 (66)
310 2eow_A Zinc finger protein 347 21.5 25 0.00085 17.4 0.4 13 43-55 12-24 (46)
311 2eof_A Zinc finger protein 268 21.4 26 0.00087 17.1 0.5 13 43-55 12-24 (44)
312 2emi_A Zinc finger protein 484 21.4 26 0.00089 17.3 0.5 13 43-55 12-24 (46)
313 2epv_A Zinc finger protein 268 21.3 25 0.00087 17.3 0.4 13 43-55 12-24 (44)
314 1bbo_A Human enhancer-binding 21.2 42 0.0014 17.2 1.4 12 44-55 2-13 (57)
315 2emj_A Zinc finger protein 28 21.2 26 0.00089 17.4 0.5 13 43-55 12-24 (46)
316 2egq_A FHL1 protein; LIM domai 20.8 53 0.0018 18.7 1.9 44 4-59 16-62 (77)
317 1sp2_A SP1F2; zinc finger, tra 20.7 48 0.0017 14.5 1.4 13 43-55 2-16 (31)
318 2em3_A Zinc finger protein 28 20.6 27 0.00091 17.3 0.4 13 43-55 12-24 (46)
319 2yrj_A Zinc finger protein 473 20.5 28 0.00095 17.2 0.5 13 43-55 12-24 (46)
320 2eq3_A Zinc finger protein 347 20.4 25 0.00085 17.4 0.3 13 43-55 12-24 (46)
321 1tfi_A Transcriptional elongat 20.4 56 0.0019 17.9 1.8 11 2-12 8-18 (50)
322 2em4_A Zinc finger protein 28 20.4 27 0.00093 17.3 0.4 13 43-55 12-24 (46)
323 2en2_A B-cell lymphoma 6 prote 20.3 26 0.00089 16.9 0.3 13 43-55 11-23 (42)
324 2emb_A Zinc finger protein 473 20.2 26 0.00088 17.1 0.3 13 43-55 12-24 (44)
325 2ene_A Zinc finger protein 347 20.2 28 0.00094 17.2 0.4 13 43-55 12-24 (46)
326 3n1e_A Vacuolar protein sortin 20.2 31 0.0011 23.4 0.8 23 91-113 13-35 (141)
327 2yto_A Zinc finger protein 484 20.2 28 0.00097 17.2 0.5 13 43-55 12-24 (46)
328 2emy_A Zinc finger protein 268 20.1 29 0.00098 17.2 0.5 13 43-55 12-24 (46)
329 2l4z_A DNA endonuclease RBBP8, 20.1 44 0.0015 21.5 1.5 11 44-54 89-99 (123)
330 2eml_A Zinc finger protein 28 20.0 28 0.00095 17.2 0.4 13 43-55 12-24 (46)
No 1
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.77 E-value=3.2e-19 Score=108.70 Aligned_cols=65 Identities=77% Similarity=1.506 Sum_probs=57.6
Q ss_pred CCCccCcccCCCcccCCCCcccccccCCccchhHHHHHhhcCCCCCCCCCccccCCCCccccccc
Q psy17995 1 MDDQECPRCKTTKYRKPTLKLMVNICGHPLCEGCVDLLFLKGTGNCYECNQPLRRGNFRVQLFDD 65 (120)
Q Consensus 1 ~d~~~CpiC~~~~~~~p~~~~~~~~CGH~fC~~Ci~~~~~~~~~~CP~C~~~~~~~~~~~~~f~d 65 (120)
|+++.||||+++.+.+|..++++++|||+||..||..++..+...||+|++.+.+.++++.+|+|
T Consensus 1 m~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~d 65 (65)
T 1g25_A 1 MDDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFRVQLFED 65 (65)
T ss_dssp CCTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCCEEECCCC
T ss_pred CCCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccccceeecccC
Confidence 89999999994378899766566799999999999999887778899999999999999998886
No 2
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.66 E-value=9e-18 Score=117.35 Aligned_cols=95 Identities=23% Similarity=0.451 Sum_probs=75.9
Q ss_pred CCccCcccCCCcccCCCCcccccccCCccchhHHHHHhhcCCCCCCCCCccccCCC-----CccccccchhHHHHHHHHH
Q psy17995 2 DDQECPRCKTTKYRKPTLKLMVNICGHPLCEGCVDLLFLKGTGNCYECNQPLRRGN-----FRVQLFDDSSVEKEVEIRK 76 (120)
Q Consensus 2 d~~~CpiC~~~~~~~p~~~~~~~~CGH~fC~~Ci~~~~~~~~~~CP~C~~~~~~~~-----~~~~~f~d~~~~~e~~~rk 76 (120)
+++.||||++ ++.+| ++++|||+||..||..++..+...||+|+..+.... ....+|.|..+++++..
T Consensus 30 ~~~~C~IC~~-~~~~p----v~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~l~~~~~~~d~~~~~~i~~-- 102 (141)
T 3knv_A 30 AKYLCSACRN-VLRRP----FQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYEEGISILESSSAFPDNAARREVES-- 102 (141)
T ss_dssp GGGBCTTTCS-BCSSE----EECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCCCTTTTEECGGGCEECHHHHHHHHT--
T ss_pred cCcCCCCCCh-hhcCc----EECCCCCccCHHHHHHHHhcCCCCCCCCCCcccccccccccchhhhcccHHHHHHHcc--
Confidence 4579999995 88999 457999999999999999876678999999753221 12367899999999974
Q ss_pred Hhhhhhhccc-CCc-cCHHHHHH-HHHHHHHH
Q psy17995 77 KLLKDYNKVE-EDF-NSLAEYND-YLEEIEEI 105 (120)
Q Consensus 77 ~~~k~~~~~~-~~~-~~l~~y~~-yle~~E~~ 105 (120)
++++|.+. +.| +++.+|++ |+.+-+.+
T Consensus 103 --L~v~Cpn~GC~~~~~l~~l~~~H~~~~~~~ 132 (141)
T 3knv_A 103 --LPAVCPSDGCTWKGTLKEYESCHEGRCPLM 132 (141)
T ss_dssp --SEEECCSTTCCCEEEHHHHHHHTTTCCHHH
T ss_pred --cccccCCCCCCCEeEHHHHHHHHHHHhHHH
Confidence 89998765 677 99999998 88665554
No 3
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.57 E-value=1.6e-15 Score=95.02 Aligned_cols=56 Identities=13% Similarity=0.284 Sum_probs=46.9
Q ss_pred CCccCcccCCCcccCCCCcccccccCCccchhHHHHHhhcCCCCCCCCCccccCCCCcccc
Q psy17995 2 DDQECPRCKTTKYRKPTLKLMVNICGHPLCEGCVDLLFLKGTGNCYECNQPLRRGNFRVQL 62 (120)
Q Consensus 2 d~~~CpiC~~~~~~~p~~~~~~~~CGH~fC~~Ci~~~~~~~~~~CP~C~~~~~~~~~~~~~ 62 (120)
+++.||||++ ++.+| ++++|||+||..||..++..+...||+|+..+...++.++.
T Consensus 7 ~~~~C~IC~~-~~~~P----v~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~n~ 62 (78)
T 1t1h_A 7 EYFRCPISLE-LMKDP----VIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNY 62 (78)
T ss_dssp SSSSCTTTSC-CCSSE----EEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECT
T ss_pred ccCCCCCccc-cccCC----EEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCccCH
Confidence 5689999995 88999 45699999999999999987678999999999876554443
No 4
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.57 E-value=2.8e-16 Score=106.08 Aligned_cols=87 Identities=25% Similarity=0.382 Sum_probs=70.2
Q ss_pred CCccCcccCCCcccCCCCcccccccCCccchhHHHHHhhcCCCCCCCCCccccCCCCccccccchhHHHHHHHHHHhhhh
Q psy17995 2 DDQECPRCKTTKYRKPTLKLMVNICGHPLCEGCVDLLFLKGTGNCYECNQPLRRGNFRVQLFDDSSVEKEVEIRKKLLKD 81 (120)
Q Consensus 2 d~~~CpiC~~~~~~~p~~~~~~~~CGH~fC~~Ci~~~~~~~~~~CP~C~~~~~~~~~~~~~f~d~~~~~e~~~rk~~~k~ 81 (120)
+++.||||++ .+.+| ++++|||.||..||..++..+...||+|+..+... .++.+..+++.+.. +++
T Consensus 17 ~~~~C~IC~~-~~~~p----~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~----~~~~~~~l~~~i~~----l~v 83 (118)
T 3hct_A 17 SKYECPICLM-ALREA----VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN----QLFPDNFAKREILS----LMV 83 (118)
T ss_dssp GGGBCTTTCS-BCSSE----EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG----GCEECHHHHHHHHT----SEE
T ss_pred CCCCCCcCCh-hhcCe----EECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHH----hcccCHHHHHHHcc----cee
Confidence 3579999995 88888 45699999999999998887656999999998753 45678888888864 888
Q ss_pred hhccc-CCc-cCHHHHHHHHHH
Q psy17995 82 YNKVE-EDF-NSLAEYNDYLEE 101 (120)
Q Consensus 82 ~~~~~-~~~-~~l~~y~~yle~ 101 (120)
++.+. +.| +++.++.+|+++
T Consensus 84 ~C~n~gC~~~~~~~~l~~H~~~ 105 (118)
T 3hct_A 84 KCPNEGCLHKMELRHLEDHQAH 105 (118)
T ss_dssp ECSSTTCCCEEEGGGSGGGTSS
T ss_pred ECCCCCCCCEEeeHHHHHHHHH
Confidence 88755 667 889888888753
No 5
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.55 E-value=3e-15 Score=100.39 Aligned_cols=87 Identities=18% Similarity=0.286 Sum_probs=65.5
Q ss_pred CccCcccCCCcccCCCCcccccccCCccchhHHHHHhhcCCCCCCCCCccccCCCCccccccchhHHHHHHHHHHhhhhh
Q psy17995 3 DQECPRCKTTKYRKPTLKLMVNICGHPLCEGCVDLLFLKGTGNCYECNQPLRRGNFRVQLFDDSSVEKEVEIRKKLLKDY 82 (120)
Q Consensus 3 ~~~CpiC~~~~~~~p~~~~~~~~CGH~fC~~Ci~~~~~~~~~~CP~C~~~~~~~~~~~~~f~d~~~~~e~~~rk~~~k~~ 82 (120)
++.||||++ .+.+| ++++|||+||..||..++..+...||+|+..+...++.. .+..+.+.+. -++++
T Consensus 23 ~~~C~IC~~-~~~~p----~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~---~~~~l~~~i~----~l~v~ 90 (116)
T 1rmd_A 23 SISCQICEH-ILADP----VETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLES---PVKSFLNILN----SLMVK 90 (116)
T ss_dssp HTBCTTTCS-BCSSE----EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBC---CCHHHHHHHH----HCEEE
T ss_pred CCCCCCCCc-HhcCc----EEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhccc---cHHHHHHHHH----HhcCC
Confidence 468999995 88888 457999999999999999875678999999987654432 2333443443 36777
Q ss_pred hccc-CCc-cCHHHHHHHHHH
Q psy17995 83 NKVE-EDF-NSLAEYNDYLEE 101 (120)
Q Consensus 83 ~~~~-~~~-~~l~~y~~yle~ 101 (120)
+.+. +.| +++.++.+|+++
T Consensus 91 C~~~gC~~~~~~~~~~~H~~~ 111 (116)
T 1rmd_A 91 CPAQDCNEEVSLEKYNHHVSS 111 (116)
T ss_dssp CCSTTCCCEEEHHHHHHHHHT
T ss_pred CCCCCCcchhhHhHHHHHHHH
Confidence 7764 666 899999999863
No 6
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.51 E-value=4.9e-15 Score=105.34 Aligned_cols=86 Identities=26% Similarity=0.385 Sum_probs=69.7
Q ss_pred CCccCcccCCCcccCCCCcccccccCCccchhHHHHHhhcCCCCCCCCCccccCCCCccccccchhHHHHHHHHHHhhhh
Q psy17995 2 DDQECPRCKTTKYRKPTLKLMVNICGHPLCEGCVDLLFLKGTGNCYECNQPLRRGNFRVQLFDDSSVEKEVEIRKKLLKD 81 (120)
Q Consensus 2 d~~~CpiC~~~~~~~p~~~~~~~~CGH~fC~~Ci~~~~~~~~~~CP~C~~~~~~~~~~~~~f~d~~~~~e~~~rk~~~k~ 81 (120)
+++.||||++ ++.+| ++++|||+||..||..++..+...||.|+..+... .++.+..+++++.. +++
T Consensus 17 ~~~~C~IC~~-~~~~p----v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~----~~~~~~~~~~~i~~----l~v 83 (170)
T 3hcs_A 17 SKYECPICLM-ALREA----VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN----QLFPDNFAKREILS----LMV 83 (170)
T ss_dssp GGGBCTTTCS-BCSSE----EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG----GCEECHHHHHHHHT----SEE
T ss_pred CCCCCCCCCh-hhcCc----EECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchh----hhhhhHHHHHHHhh----ccc
Confidence 4579999995 88999 45799999999999999887556999999998754 35678888888864 888
Q ss_pred hhccc-CCc-cCHHHHHHHHH
Q psy17995 82 YNKVE-EDF-NSLAEYNDYLE 100 (120)
Q Consensus 82 ~~~~~-~~~-~~l~~y~~yle 100 (120)
++.+. +.+ .++.++.+|++
T Consensus 84 ~C~n~GC~~~~~~~~l~~H~~ 104 (170)
T 3hcs_A 84 KCPNEGCLHKMELRHLEDHQA 104 (170)
T ss_dssp ECCSTTCCCEEEGGGHHHHHT
T ss_pred CCCCCCCCceecHhHHHHHHh
Confidence 88765 566 88888888863
No 7
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=3e-14 Score=86.68 Aligned_cols=51 Identities=25% Similarity=0.742 Sum_probs=42.9
Q ss_pred CCccCcccCCCcccCCCCcccccccCCccchhHHHHHhhcCCCCCCCCCccccCCC
Q psy17995 2 DDQECPRCKTTKYRKPTLKLMVNICGHPLCEGCVDLLFLKGTGNCYECNQPLRRGN 57 (120)
Q Consensus 2 d~~~CpiC~~~~~~~p~~~~~~~~CGH~fC~~Ci~~~~~~~~~~CP~C~~~~~~~~ 57 (120)
+++.||||++ .+.+| ++++|||+||..||..++..+...||+|++.+...+
T Consensus 14 ~~~~C~IC~~-~~~~p----~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 64 (66)
T 2ecy_A 14 DKYKCEKCHL-VLCSP----KQTECGHRFCESCMAALLSSSSPKCTACQESIVKDK 64 (66)
T ss_dssp CCEECTTTCC-EESSC----CCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTT
T ss_pred cCCCCCCCCh-HhcCe----eECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhh
Confidence 4678999995 88888 346999999999999998755678999999987643
No 8
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.47 E-value=1.8e-14 Score=97.68 Aligned_cols=48 Identities=27% Similarity=0.675 Sum_probs=41.6
Q ss_pred CccCcccCCCcccCCCCcccccccCCccchhHHHHHhhcCCCCCCCCCccccC
Q psy17995 3 DQECPRCKTTKYRKPTLKLMVNICGHPLCEGCVDLLFLKGTGNCYECNQPLRR 55 (120)
Q Consensus 3 ~~~CpiC~~~~~~~p~~~~~~~~CGH~fC~~Ci~~~~~~~~~~CP~C~~~~~~ 55 (120)
++.||||++ .+.+| ++++|||+||..||..++..+...||.|+..+..
T Consensus 52 ~~~C~IC~~-~~~~p----~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 52 TFQCICCQE-LVFRP----ITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HTBCTTTSS-BCSSE----EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCCCCcCCh-HHcCc----EEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 468999995 88888 4569999999999999998666799999999976
No 9
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.47 E-value=9.9e-15 Score=91.20 Aligned_cols=57 Identities=21% Similarity=0.591 Sum_probs=45.9
Q ss_pred CCccCcccCCCcccCCCCcccccccCCccchhHHHHHhhcC------CCCCCCCCccccCCCCccccc
Q psy17995 2 DDQECPRCKTTKYRKPTLKLMVNICGHPLCEGCVDLLFLKG------TGNCYECNQPLRRGNFRVQLF 63 (120)
Q Consensus 2 d~~~CpiC~~~~~~~p~~~~~~~~CGH~fC~~Ci~~~~~~~------~~~CP~C~~~~~~~~~~~~~f 63 (120)
+++.||||++ .+.+| ++.+|||+||..|+..++... ...||.|+..+...++..+..
T Consensus 11 ~~~~C~IC~~-~~~~p----~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~ 73 (79)
T 2egp_A 11 EEVTCPICLE-LLTEP----LSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQANQH 73 (79)
T ss_dssp CCCEETTTTE-ECSSC----CCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGTCSS
T ss_pred cCCCCcCCCc-ccCCe----eECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCcCHH
Confidence 4678999995 78888 346999999999999988752 578999999998766655543
No 10
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.46 E-value=1.7e-14 Score=94.85 Aligned_cols=56 Identities=20% Similarity=0.441 Sum_probs=46.3
Q ss_pred CccCcccCCCcccCCCCcccc-cccCCccchhHHHHHhhcCCCCCCCCCccccCCCCccccc
Q psy17995 3 DQECPRCKTTKYRKPTLKLMV-NICGHPLCEGCVDLLFLKGTGNCYECNQPLRRGNFRVQLF 63 (120)
Q Consensus 3 ~~~CpiC~~~~~~~p~~~~~~-~~CGH~fC~~Ci~~~~~~~~~~CP~C~~~~~~~~~~~~~f 63 (120)
++.||||++ .+.+| ++ ++|||.||..||..++......||.|+.++...++....+
T Consensus 22 ~~~C~IC~~-~~~~p----~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~~~~~ 78 (100)
T 3lrq_A 22 VFRCFICME-KLRDA----RLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRW 78 (100)
T ss_dssp HTBCTTTCS-BCSSE----EECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECTT
T ss_pred CCCCccCCc-cccCc----cccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhHhhHH
Confidence 578999995 88888 45 7999999999999999876579999999998766554443
No 11
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.46 E-value=4.9e-14 Score=90.67 Aligned_cols=53 Identities=25% Similarity=0.571 Sum_probs=42.6
Q ss_pred CCccCcccCCCcccCCCCcccccc-cCCccchhHHHHHhhc-CCCCCCCCCccc-cCCCCc
Q psy17995 2 DDQECPRCKTTKYRKPTLKLMVNI-CGHPLCEGCVDLLFLK-GTGNCYECNQPL-RRGNFR 59 (120)
Q Consensus 2 d~~~CpiC~~~~~~~p~~~~~~~~-CGH~fC~~Ci~~~~~~-~~~~CP~C~~~~-~~~~~~ 59 (120)
+++.||||++ ++.+| ++++ |||+||..||..++.. +...||.|+..+ ...++.
T Consensus 12 ~~~~C~IC~~-~~~~p----~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~ 67 (92)
T 3ztg_A 12 DELLCLICKD-IMTDA----VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALI 67 (92)
T ss_dssp TTTEETTTTE-ECSSC----EECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCE
T ss_pred cCCCCCCCCh-hhcCc----eECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccC
Confidence 4689999995 88999 4567 9999999999999875 347899999987 343443
No 12
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.45 E-value=6.6e-14 Score=88.06 Aligned_cols=57 Identities=30% Similarity=0.792 Sum_probs=46.7
Q ss_pred CCccCcccCCCcccCCCCcccccccCCccchhHHHHHhhcC-----CCCCCCCCccccCCCCccccc
Q psy17995 2 DDQECPRCKTTKYRKPTLKLMVNICGHPLCEGCVDLLFLKG-----TGNCYECNQPLRRGNFRVQLF 63 (120)
Q Consensus 2 d~~~CpiC~~~~~~~p~~~~~~~~CGH~fC~~Ci~~~~~~~-----~~~CP~C~~~~~~~~~~~~~f 63 (120)
+++.||||++ .+.+| ++++|||.||..|+..++... ...||.|+..+...++.++..
T Consensus 18 ~~~~C~IC~~-~~~~p----~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~ 79 (85)
T 2ecw_A 18 EEVTCPICLE-LLKEP----VSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNLH 79 (85)
T ss_dssp TTTSCTTTCS-CCSSC----EECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECSC
T ss_pred cCCCCcCCCh-hhCcc----eeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCHH
Confidence 4678999995 78888 456999999999999988862 578999999998776665544
No 13
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.44 E-value=1.9e-13 Score=90.45 Aligned_cols=64 Identities=22% Similarity=0.459 Sum_probs=50.5
Q ss_pred CccCcccCCCcccCCCCcccccccCCccchhHHHHHhhcC--CCCCCCCCccccCCCCccccccchhHHHH
Q psy17995 3 DQECPRCKTTKYRKPTLKLMVNICGHPLCEGCVDLLFLKG--TGNCYECNQPLRRGNFRVQLFDDSSVEKE 71 (120)
Q Consensus 3 ~~~CpiC~~~~~~~p~~~~~~~~CGH~fC~~Ci~~~~~~~--~~~CP~C~~~~~~~~~~~~~f~d~~~~~e 71 (120)
.+.||||++ .+.+| ++++|||.||..||..++..+ ...||+|+..+...++..+...+..++.-
T Consensus 21 ~~~C~IC~~-~~~~p----~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~~~~~ 86 (112)
T 1jm7_A 21 ILECPICLE-LIKEP----VSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQLVEEL 86 (112)
T ss_dssp HTSCSSSCC-CCSSC----CBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCCSSSHHHHHH
T ss_pred CCCCcccCh-hhcCe----EECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCccHHHHHHHHHH
Confidence 468999995 78888 356999999999999998853 36899999999887777666555555433
No 14
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=9.3e-14 Score=87.36 Aligned_cols=57 Identities=26% Similarity=0.658 Sum_probs=46.4
Q ss_pred CCccCcccCCCcccCCCCcccccccCCccchhHHHHHhhc-----CCCCCCCCCccccCCCCccccc
Q psy17995 2 DDQECPRCKTTKYRKPTLKLMVNICGHPLCEGCVDLLFLK-----GTGNCYECNQPLRRGNFRVQLF 63 (120)
Q Consensus 2 d~~~CpiC~~~~~~~p~~~~~~~~CGH~fC~~Ci~~~~~~-----~~~~CP~C~~~~~~~~~~~~~f 63 (120)
+.+.||||++ .+.+| ++.+|||.||..|+..++.. +...||.|+..+...++.++..
T Consensus 18 ~~~~C~IC~~-~~~~p----~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~ 79 (85)
T 2ecv_A 18 EEVTCPICLE-LLTQP----LSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNRH 79 (85)
T ss_dssp CCCCCTTTCS-CCSSC----BCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCSCC
T ss_pred CCCCCCCCCc-ccCCc----eeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCccHH
Confidence 4679999995 77888 34699999999999998875 3578999999998776665544
No 15
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.43 E-value=1.8e-13 Score=86.81 Aligned_cols=56 Identities=23% Similarity=0.555 Sum_probs=42.2
Q ss_pred CCccCcccCCCcccCCCCcccccccCCccchhHHHHHhhcCCCCCCCCCccccCCCC
Q psy17995 2 DDQECPRCKTTKYRKPTLKLMVNICGHPLCEGCVDLLFLKGTGNCYECNQPLRRGNF 58 (120)
Q Consensus 2 d~~~CpiC~~~~~~~p~~~~~~~~CGH~fC~~Ci~~~~~~~~~~CP~C~~~~~~~~~ 58 (120)
+++.||||++ .+..+...++..+|||+||..|+..+|..+...||.||+++....+
T Consensus 10 ~~~~CpICle-~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~ 65 (78)
T 1e4u_A 10 DPVECPLCME-PLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPA 65 (78)
T ss_dssp CCCBCTTTCC-BCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSS
T ss_pred cCCcCCccCc-cCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCch
Confidence 5679999996 5433322222235999999999999997767899999999987654
No 16
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.43 E-value=9.7e-14 Score=89.04 Aligned_cols=62 Identities=13% Similarity=0.067 Sum_probs=49.3
Q ss_pred CCccCcccCCCcccCCCCcccccccCCccchhHHHHHhhcCCCCCCCCCccccCCCCccccccchhHHHHHH
Q psy17995 2 DDQECPRCKTTKYRKPTLKLMVNICGHPLCEGCVDLLFLKGTGNCYECNQPLRRGNFRVQLFDDSSVEKEVE 73 (120)
Q Consensus 2 d~~~CpiC~~~~~~~p~~~~~~~~CGH~fC~~Ci~~~~~~~~~~CP~C~~~~~~~~~~~~~f~d~~~~~e~~ 73 (120)
+++.||||++ ++.+| ++++|||+||.+||..+|.. ...||+|+.++...++ +.+..+++.|+
T Consensus 13 ~~~~CpI~~~-~m~dP----V~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~~~l----~pn~~L~~~i~ 74 (85)
T 2kr4_A 13 DEFRDPLMDT-LMTDP----VRLPSGTVMDRSIILRHLLN-SPTDPFNRQMLTESML----EPVPELKEQIQ 74 (85)
T ss_dssp TTTBCTTTCS-BCSSE----EECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCGGGC----EECHHHHHHHH
T ss_pred hheECcccCc-hhcCC----eECCCCCEECHHHHHHHHhc-CCCCCCCcCCCChHhc----chHHHHHHHHH
Confidence 4689999995 99999 56799999999999999986 4789999999976544 44445554443
No 17
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=1.4e-13 Score=84.85 Aligned_cols=51 Identities=27% Similarity=0.659 Sum_probs=42.0
Q ss_pred CCccCcccCCCcccCCCCcccccccCCccchhHHHHHhhc--CCCCCCCCCccccCCC
Q psy17995 2 DDQECPRCKTTKYRKPTLKLMVNICGHPLCEGCVDLLFLK--GTGNCYECNQPLRRGN 57 (120)
Q Consensus 2 d~~~CpiC~~~~~~~p~~~~~~~~CGH~fC~~Ci~~~~~~--~~~~CP~C~~~~~~~~ 57 (120)
+++.||||++ .+.+| ++.+|||.||..|+..++.. +...||+|+..+...+
T Consensus 19 ~~~~C~IC~~-~~~~~----~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 71 (73)
T 2ysl_A 19 EEVICPICLD-ILQKP----VTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNA 71 (73)
T ss_dssp CCCBCTTTCS-BCSSE----EECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCC
T ss_pred cCCEeccCCc-ccCCe----EEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCccc
Confidence 4578999995 77888 34599999999999998863 4578999999987654
No 18
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.41 E-value=9.3e-14 Score=91.84 Aligned_cols=62 Identities=13% Similarity=0.099 Sum_probs=49.6
Q ss_pred CCccCcccCCCcccCCCCcccccccCCccchhHHHHHhhcCCCCCCCCCccccCCCCccccccchhHHHHHH
Q psy17995 2 DDQECPRCKTTKYRKPTLKLMVNICGHPLCEGCVDLLFLKGTGNCYECNQPLRRGNFRVQLFDDSSVEKEVE 73 (120)
Q Consensus 2 d~~~CpiC~~~~~~~p~~~~~~~~CGH~fC~~Ci~~~~~~~~~~CP~C~~~~~~~~~~~~~f~d~~~~~e~~ 73 (120)
+++.||||++ ++.+| ++++|||+||.+||..+|.. ...||+|+.++...++. ++..+.+.|+
T Consensus 28 ~~~~CpI~~~-~m~dP----V~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~~~L~----pn~~Lk~~I~ 89 (100)
T 2kre_A 28 DEFRDPLMDT-LMTDP----VRLPSGTIMDRSIILRHLLN-SPTDPFNRQTLTESMLE----PVPELKEQIQ 89 (100)
T ss_dssp TTTBCTTTCS-BCSSE----EEETTTEEEEHHHHHHHTTS-CSBCSSSCCBCCTTSSE----ECHHHHHHHH
T ss_pred HhhCCcCccC-cccCC----eECCCCCEEchHHHHHHHHc-CCCCCCCCCCCChhhce----ECHHHHHHHH
Confidence 4689999995 99999 56799999999999999985 57899999999875544 4445554444
No 19
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.40 E-value=9.1e-14 Score=90.71 Aligned_cols=60 Identities=18% Similarity=0.412 Sum_probs=45.8
Q ss_pred CccCcccCCCcccCCCCccccc-ccCCccchhHHHHHhhcCCCCCCCCCccccCCCCccccccchhH
Q psy17995 3 DQECPRCKTTKYRKPTLKLMVN-ICGHPLCEGCVDLLFLKGTGNCYECNQPLRRGNFRVQLFDDSSV 68 (120)
Q Consensus 3 ~~~CpiC~~~~~~~p~~~~~~~-~CGH~fC~~Ci~~~~~~~~~~CP~C~~~~~~~~~~~~~f~d~~~ 68 (120)
.+.||||++ .+.+| ++. +|||.||..||..++.. ...||+|+..+...++..+..-+..+
T Consensus 22 ~~~C~IC~~-~~~~p----~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~l~~n~~l~~~i 82 (99)
T 2y43_A 22 LLRCGICFE-YFNIA----MIIPQCSHNYCSLCIRKFLSY-KTQCPTCCVTVTEPDLKNNRILDELV 82 (99)
T ss_dssp HTBCTTTCS-BCSSE----EECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCGGGCEECHHHHHHH
T ss_pred CCCcccCCh-hhCCc----CEECCCCCHhhHHHHHHHHHC-CCCCCCCCCcCChhhCCcCHHHHHHH
Confidence 468999995 78888 344 89999999999998875 47899999998865555444333333
No 20
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.40 E-value=1.1e-13 Score=97.38 Aligned_cols=49 Identities=22% Similarity=0.548 Sum_probs=42.8
Q ss_pred CccCcccCCCcccCCCCcccccccCCccchhHHHHHhhcCCCCCCCCCccccCC
Q psy17995 3 DQECPRCKTTKYRKPTLKLMVNICGHPLCEGCVDLLFLKGTGNCYECNQPLRRG 56 (120)
Q Consensus 3 ~~~CpiC~~~~~~~p~~~~~~~~CGH~fC~~Ci~~~~~~~~~~CP~C~~~~~~~ 56 (120)
.+.||||++ ++.+| ++++|||+||..||..++..+...||+|+..+...
T Consensus 78 ~~~C~IC~~-~~~~p----v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 78 SFMCVCCQE-LVYQP----VTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HTBCTTTSS-BCSSE----EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred CCEeecCCh-hhcCC----EEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 468999995 88999 45799999999999999987667899999999765
No 21
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.38 E-value=1.6e-13 Score=102.83 Aligned_cols=63 Identities=11% Similarity=0.068 Sum_probs=50.0
Q ss_pred CCccCcccCCCcccCCCCcccccccCCccchhHHHHHhhcCCCCCCCCCccccCCCCccccccchhHHHHHH
Q psy17995 2 DDQECPRCKTTKYRKPTLKLMVNICGHPLCEGCVDLLFLKGTGNCYECNQPLRRGNFRVQLFDDSSVEKEVE 73 (120)
Q Consensus 2 d~~~CpiC~~~~~~~p~~~~~~~~CGH~fC~~Ci~~~~~~~~~~CP~C~~~~~~~~~~~~~f~d~~~~~e~~ 73 (120)
+.+.||||++ ++.+| |+++|||+||.+||..+|..+...||+|+.++...+ ++++..+++.|+
T Consensus 207 ~~~~c~i~~~-~~~dP----v~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~----l~~n~~l~~~i~ 269 (281)
T 2c2l_A 207 DYLCGKISFE-LMREP----CITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQ----LIPNLAMKEVID 269 (281)
T ss_dssp STTBCTTTCS-BCSSE----EECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGG----CEECHHHHHHHH
T ss_pred cccCCcCcCC-HhcCC----eECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhc----CcccHHHHHHHH
Confidence 4689999995 99999 567999999999999999876556999999997544 445555555443
No 22
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.38 E-value=3.4e-13 Score=83.91 Aligned_cols=50 Identities=26% Similarity=0.593 Sum_probs=41.1
Q ss_pred CCccCcccCCCcccCCCCcccccc-cCCccchhHHHHHhhcC-CCCCCCCCccccCC
Q psy17995 2 DDQECPRCKTTKYRKPTLKLMVNI-CGHPLCEGCVDLLFLKG-TGNCYECNQPLRRG 56 (120)
Q Consensus 2 d~~~CpiC~~~~~~~p~~~~~~~~-CGH~fC~~Ci~~~~~~~-~~~CP~C~~~~~~~ 56 (120)
+++.||||++ .+.+| ++++ |||.||..||..++... ...||+|++.+...
T Consensus 14 ~~~~C~IC~~-~~~~p----~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~ 65 (74)
T 2yur_A 14 DELLCLICKD-IMTDA----VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSP 65 (74)
T ss_dssp GGGSCSSSCC-CCTTC----EECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCT
T ss_pred CCCCCcCCCh-HHhCC----eEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCc
Confidence 4578999995 88998 4567 99999999999999853 46899999976543
No 23
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.37 E-value=2.7e-13 Score=89.30 Aligned_cols=62 Identities=13% Similarity=0.113 Sum_probs=50.0
Q ss_pred CCccCcccCCCcccCCCCcccccccC-CccchhHHHHHhhcCCCCCCCCCccccCCCCccccccchhHHHHHH
Q psy17995 2 DDQECPRCKTTKYRKPTLKLMVNICG-HPLCEGCVDLLFLKGTGNCYECNQPLRRGNFRVQLFDDSSVEKEVE 73 (120)
Q Consensus 2 d~~~CpiC~~~~~~~p~~~~~~~~CG-H~fC~~Ci~~~~~~~~~~CP~C~~~~~~~~~~~~~f~d~~~~~e~~ 73 (120)
+++.||||++ ++.+| |+++|| |+||..||..+|.. ...||+|+.++...++ +++..+++.|+
T Consensus 21 ~~~~CpI~~~-~m~dP----V~~~cG~htf~r~cI~~~l~~-~~~cP~~~~~l~~~~L----~pn~~Lk~~I~ 83 (98)
T 1wgm_A 21 DEFLDPIMST-LMCDP----VVLPSSRVTVDRSTIARHLLS-DQTDPFNRSPLTMDQI----RPNTELKEKIQ 83 (98)
T ss_dssp TTTBCTTTCS-BCSSE----EECTTTCCEEEHHHHHHHTTT-SCBCTTTCSBCCTTTS----EECHHHHHHHH
T ss_pred HhcCCcCccc-cccCC----eECCCCCeEECHHHHHHHHHh-CCCCCCCCCCCChhhc----eEcHHHHHHHH
Confidence 4689999995 99999 567999 99999999999986 4789999999986554 45555555554
No 24
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.37 E-value=3e-13 Score=90.95 Aligned_cols=60 Identities=25% Similarity=0.521 Sum_probs=47.3
Q ss_pred CCccCcccCCCcccCCCCccccc-ccCCccchhHHHHHhhcCCCCCCCCCccccCCCCccccccchhHH
Q psy17995 2 DDQECPRCKTTKYRKPTLKLMVN-ICGHPLCEGCVDLLFLKGTGNCYECNQPLRRGNFRVQLFDDSSVE 69 (120)
Q Consensus 2 d~~~CpiC~~~~~~~p~~~~~~~-~CGH~fC~~Ci~~~~~~~~~~CP~C~~~~~~~~~~~~~f~d~~~~ 69 (120)
+++.||||++ ++.+| +++ +|||+||..||..++. ..||+|+..+...++..+..-...++
T Consensus 21 ~~~~C~IC~~-~~~~p----v~~~~CgH~fC~~Ci~~~~~---~~CP~Cr~~~~~~~~~~n~~l~~l~~ 81 (117)
T 1jm7_B 21 KLLRCSRCTN-ILREP----VCLGGCEHIFCSNCVSDCIG---TGCPVCYTPAWIQDLKINRQLDSMIQ 81 (117)
T ss_dssp HTTSCSSSCS-CCSSC----BCCCSSSCCBCTTTGGGGTT---TBCSSSCCBCSCSSCCCCHHHHHHHH
T ss_pred hCCCCCCCCh-HhhCc----cEeCCCCCHHHHHHHHHHhc---CCCcCCCCcCccccccccHHHHHHHH
Confidence 3578999995 88999 455 9999999999998876 68999999997766665554444444
No 25
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.37 E-value=2.8e-13 Score=82.91 Aligned_cols=58 Identities=19% Similarity=0.555 Sum_probs=44.8
Q ss_pred CCccCcccCCCcccCC---CCcccccccCCccchhHHHHHhhcCCCCCCCCCccccCCCCccc
Q psy17995 2 DDQECPRCKTTKYRKP---TLKLMVNICGHPLCEGCVDLLFLKGTGNCYECNQPLRRGNFRVQ 61 (120)
Q Consensus 2 d~~~CpiC~~~~~~~p---~~~~~~~~CGH~fC~~Ci~~~~~~~~~~CP~C~~~~~~~~~~~~ 61 (120)
+++.||||++ .+.+| ...+++.+|||.||..||..++... ..||.|+..+...++.+.
T Consensus 9 ~~~~C~IC~~-~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~~~~~~~~ 69 (71)
T 3ng2_A 9 GTVSCPICMD-GYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA-NTCPTCRKKINHKRYHPI 69 (71)
T ss_dssp TCCBCTTTCC-BHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHC-SBCTTTCCBCCCCSCCCC
T ss_pred CCCCCcccCh-hhhccccccCCeEeCCCCChHhHHHHHHHHHcC-CCCCCCCCccChhheeec
Confidence 4678999996 66665 1222356999999999999988764 799999999987766543
No 26
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=5e-13 Score=82.56 Aligned_cols=53 Identities=23% Similarity=0.477 Sum_probs=42.8
Q ss_pred CCccCcccCCCcccCCCCcccccccCCccchhHHHHHhhcCCCCCCCCCccccCCCCc
Q psy17995 2 DDQECPRCKTTKYRKPTLKLMVNICGHPLCEGCVDLLFLKGTGNCYECNQPLRRGNFR 59 (120)
Q Consensus 2 d~~~CpiC~~~~~~~p~~~~~~~~CGH~fC~~Ci~~~~~~~~~~CP~C~~~~~~~~~~ 59 (120)
+++.||||++ .+.+|. .+++|||.||..||..++.. ...||+|++.+...++.
T Consensus 14 ~~~~C~IC~~-~~~~p~---~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~ 66 (72)
T 2djb_A 14 PYILCSICKG-YLIDAT---TITECLHTFCKSCIVRHFYY-SNRCPKCNIVVHQTQPL 66 (72)
T ss_dssp GGGSCTTTSS-CCSSCE---ECSSSCCEECHHHHHHHHHH-CSSCTTTCCCCCSSCSC
T ss_pred CCCCCCCCCh-HHHCcC---EECCCCCHHHHHHHHHHHHc-CCcCCCcCcccCccccc
Confidence 3578999995 778881 23499999999999998876 47899999999876544
No 27
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.33 E-value=5.3e-13 Score=79.90 Aligned_cols=57 Identities=19% Similarity=0.563 Sum_probs=44.2
Q ss_pred CCccCcccCCCcccCCC---CcccccccCCccchhHHHHHhhcCCCCCCCCCccccCCCCcc
Q psy17995 2 DDQECPRCKTTKYRKPT---LKLMVNICGHPLCEGCVDLLFLKGTGNCYECNQPLRRGNFRV 60 (120)
Q Consensus 2 d~~~CpiC~~~~~~~p~---~~~~~~~CGH~fC~~Ci~~~~~~~~~~CP~C~~~~~~~~~~~ 60 (120)
+++.||||++ .+.+|. ...++++|||.||..|+..++.. ...||.|++.+...++.+
T Consensus 2 ~~~~C~IC~~-~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~ 61 (64)
T 2xeu_A 2 AMVSCPICMD-GYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHP 61 (64)
T ss_dssp CCCBCTTTCC-BHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH-CSBCTTTCCBCTTTCEEE
T ss_pred CCCCCCccCh-hhhCccccCCCEEeCCCCCchhHHHHHHHHHc-CCCCCCCCccCCccceee
Confidence 5789999996 666651 12235699999999999998876 479999999998766543
No 28
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.33 E-value=1.3e-12 Score=86.50 Aligned_cols=49 Identities=16% Similarity=0.434 Sum_probs=41.6
Q ss_pred CCccCcccCCCcccCCCCccccc-ccCCccchhHHHHHhhcCCCCCCCCCccccCC
Q psy17995 2 DDQECPRCKTTKYRKPTLKLMVN-ICGHPLCEGCVDLLFLKGTGNCYECNQPLRRG 56 (120)
Q Consensus 2 d~~~CpiC~~~~~~~p~~~~~~~-~CGH~fC~~Ci~~~~~~~~~~CP~C~~~~~~~ 56 (120)
+++.||||++ .+.+| ++. +|||+||..||..++..+ ..||.|+..+...
T Consensus 14 ~~~~C~IC~~-~~~~p----~~~~~CgH~fC~~Ci~~~~~~~-~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 14 PHLMCVLCGG-YFIDA----TTIIECLHSFCKTCIVRYLETS-KYCPICDVQVHKT 63 (108)
T ss_dssp GGTBCTTTSS-BCSSE----EEETTTCCEEEHHHHHHHHTSC-SBCTTTCCBSCSS
T ss_pred CcCCCccCCh-HHhCc----CEeCCCCChhhHHHHHHHHHhC-CcCcCCCcccccc
Confidence 4679999995 88888 444 999999999999988764 7899999998764
No 29
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=1.2e-12 Score=82.50 Aligned_cols=47 Identities=34% Similarity=0.769 Sum_probs=40.2
Q ss_pred CCccCcccCCCcccCCCCcccccccCCccchhHHHHHhhcCCCCCCCCCcccc
Q psy17995 2 DDQECPRCKTTKYRKPTLKLMVNICGHPLCEGCVDLLFLKGTGNCYECNQPLR 54 (120)
Q Consensus 2 d~~~CpiC~~~~~~~p~~~~~~~~CGH~fC~~Ci~~~~~~~~~~CP~C~~~~~ 54 (120)
+.+.||||++ .+.+| ++++|||.||..||..++.. ...||+|+..+.
T Consensus 14 ~~~~C~IC~~-~~~~p----~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~ 60 (81)
T 2csy_A 14 IPFRCFICRQ-AFQNP----VVTKCRHYFCESCALEHFRA-TPRCYICDQPTG 60 (81)
T ss_dssp CCSBCSSSCS-BCCSE----EECTTSCEEEHHHHHHHHHH-CSBCSSSCCBCC
T ss_pred CCCCCcCCCc-hhcCe----eEccCCCHhHHHHHHHHHHC-CCcCCCcCcccc
Confidence 3578999995 78888 45799999999999998875 478999999885
No 30
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.32 E-value=6.6e-13 Score=93.91 Aligned_cols=63 Identities=22% Similarity=0.526 Sum_probs=46.9
Q ss_pred CccCcccCCCcccCCCCccccc-ccCCccchhHHHHHhhcCCCCCCCCCccccCCCCccccccchhHHHHHH
Q psy17995 3 DQECPRCKTTKYRKPTLKLMVN-ICGHPLCEGCVDLLFLKGTGNCYECNQPLRRGNFRVQLFDDSSVEKEVE 73 (120)
Q Consensus 3 ~~~CpiC~~~~~~~p~~~~~~~-~CGH~fC~~Ci~~~~~~~~~~CP~C~~~~~~~~~~~~~f~d~~~~~e~~ 73 (120)
++.||||++ .+.+| ++. +|||.||..||..++..+...||.|+..+... ..+..+..++.-+.
T Consensus 54 ~~~C~IC~~-~~~~p----~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~---~~l~~~~~l~~~i~ 117 (165)
T 2ckl_B 54 ELMCPICLD-MLKNT----MTTKECLHRFCADCIITALRSGNKECPTCRKKLVSK---RSLRPDPNFDALIS 117 (165)
T ss_dssp HHBCTTTSS-BCSSE----EEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSG---GGEEECHHHHHHHH
T ss_pred CCCCcccCh-HhhCc----CEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCc---ccCCcCHHHHHHHH
Confidence 358999995 78888 344 99999999999999987678899999998532 12334445544443
No 31
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.32 E-value=4.6e-13 Score=92.50 Aligned_cols=47 Identities=17% Similarity=0.585 Sum_probs=39.7
Q ss_pred CccCcccCCCcccCCCCcccccccCCccchhHHHHHhhcCCCCCCCCCccccC
Q psy17995 3 DQECPRCKTTKYRKPTLKLMVNICGHPLCEGCVDLLFLKGTGNCYECNQPLRR 55 (120)
Q Consensus 3 ~~~CpiC~~~~~~~p~~~~~~~~CGH~fC~~Ci~~~~~~~~~~CP~C~~~~~~ 55 (120)
++.||||++ .+.+| ++++|||.||..||..++.. ...||+|++++..
T Consensus 53 ~~~C~iC~~-~~~~~----~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 53 ELQCIICSE-YFIEA----VTLNCAHSFCSYCINEWMKR-KIECPICRKDIKS 99 (138)
T ss_dssp HSBCTTTCS-BCSSE----EEETTSCEEEHHHHHHHTTT-CSBCTTTCCBCCC
T ss_pred cCCCcccCc-ccCCc----eECCCCCCccHHHHHHHHHc-CCcCCCCCCcCCC
Confidence 468999995 88888 45699999999999998775 4789999998864
No 32
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=1.3e-12 Score=78.59 Aligned_cols=43 Identities=30% Similarity=0.700 Sum_probs=36.2
Q ss_pred CCccCcccCCCcccCCCCcccccccCCccchhHHHHHhhc--CCCCCCCC
Q psy17995 2 DDQECPRCKTTKYRKPTLKLMVNICGHPLCEGCVDLLFLK--GTGNCYEC 49 (120)
Q Consensus 2 d~~~CpiC~~~~~~~p~~~~~~~~CGH~fC~~Ci~~~~~~--~~~~CP~C 49 (120)
+++.||||++ .+.+| ++++|||+||..||..++.. +...||+|
T Consensus 19 ~~~~C~IC~~-~~~~p----~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 19 EEVICPICLD-ILQKP----VTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCBCTTTCS-BCSSC----EECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred cCCCCCcCCc-hhCCe----EEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 4679999995 78888 45699999999999999974 45689998
No 33
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.31 E-value=5.3e-13 Score=86.93 Aligned_cols=63 Identities=25% Similarity=0.608 Sum_probs=48.8
Q ss_pred CCccCcccCCCcccCCCCcccccc-cCCccchhHHHHHhhcC-----CCCCCC--CCcc-ccCCCCccccccchhHHHHH
Q psy17995 2 DDQECPRCKTTKYRKPTLKLMVNI-CGHPLCEGCVDLLFLKG-----TGNCYE--CNQP-LRRGNFRVQLFDDSSVEKEV 72 (120)
Q Consensus 2 d~~~CpiC~~~~~~~p~~~~~~~~-CGH~fC~~Ci~~~~~~~-----~~~CP~--C~~~-~~~~~~~~~~f~d~~~~~e~ 72 (120)
+++.||||++ ++.+| |+++ |||+||..||..+|..+ ...||+ |+.. +... .++++..+++.|
T Consensus 6 ~~~~CPI~~~-~~~dP----V~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~----~L~pn~~L~~~I 76 (94)
T 2yu4_A 6 SGFTCPITKE-EMKKP----VKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKS----DLIQDEALRRAI 76 (94)
T ss_dssp SCCBCTTTCS-BCSSE----EEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGG----GEEECHHHHHHH
T ss_pred cEeECcCcCc-hhcCC----EEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHh----hCcCCHHHHHHH
Confidence 4689999995 99999 5665 99999999999999853 468999 8866 6543 345666666665
Q ss_pred H
Q psy17995 73 E 73 (120)
Q Consensus 73 ~ 73 (120)
+
T Consensus 77 ~ 77 (94)
T 2yu4_A 77 E 77 (94)
T ss_dssp H
T ss_pred H
Confidence 5
No 34
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=1.6e-12 Score=82.49 Aligned_cols=55 Identities=25% Similarity=0.627 Sum_probs=42.5
Q ss_pred CCccCcccCCCcccCCCCcccccccCCccchhHHHHHhhcC--CCCCCCCCccccCCC
Q psy17995 2 DDQECPRCKTTKYRKPTLKLMVNICGHPLCEGCVDLLFLKG--TGNCYECNQPLRRGN 57 (120)
Q Consensus 2 d~~~CpiC~~~~~~~p~~~~~~~~CGH~fC~~Ci~~~~~~~--~~~CP~C~~~~~~~~ 57 (120)
+.+.||||++ .+.+.....++.+|||.||..|+..++... ...||.|+..+...+
T Consensus 14 ~~~~C~IC~~-~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 70 (88)
T 2ct2_A 14 EVLECPICME-SFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRITS 70 (88)
T ss_dssp SCCBCTTTCC-BCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCSS
T ss_pred CCCCCccCCc-cccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccchh
Confidence 4578999995 777732212456999999999999998864 478999999887653
No 35
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.30 E-value=2e-13 Score=91.27 Aligned_cols=47 Identities=23% Similarity=0.548 Sum_probs=40.5
Q ss_pred CccCcccCCCcccCCCCcccccccCCccchhHHHHHhhcCCCCCCCCCcccc
Q psy17995 3 DQECPRCKTTKYRKPTLKLMVNICGHPLCEGCVDLLFLKGTGNCYECNQPLR 54 (120)
Q Consensus 3 ~~~CpiC~~~~~~~p~~~~~~~~CGH~fC~~Ci~~~~~~~~~~CP~C~~~~~ 54 (120)
++.||||++ .+.+| ++.+|||.||..||..++..+...||.|+..+.
T Consensus 15 ~~~C~iC~~-~~~~p----~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 15 ECQCGICME-ILVEP----VTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVS 61 (115)
T ss_dssp HHBCTTTCS-BCSSC----EECTTSCEECHHHHCCCCCTTTSBCTTTCCBCH
T ss_pred CCCCccCCc-ccCce----eEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccC
Confidence 468999995 78888 446999999999999988776689999999875
No 36
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.28 E-value=1.2e-12 Score=94.93 Aligned_cols=55 Identities=11% Similarity=-0.015 Sum_probs=45.4
Q ss_pred CCccCcccCCCcccCCCCcccccccCCccchhHHHHHhhcCCCCCCCCCccccCCCCccc
Q psy17995 2 DDQECPRCKTTKYRKPTLKLMVNICGHPLCEGCVDLLFLKGTGNCYECNQPLRRGNFRVQ 61 (120)
Q Consensus 2 d~~~CpiC~~~~~~~p~~~~~~~~CGH~fC~~Ci~~~~~~~~~~CP~C~~~~~~~~~~~~ 61 (120)
+.+.||||++ ++.+| |+++|||+||.+||..+|..+...||+|+.++...++.++
T Consensus 105 ~~f~CPI~~e-lm~DP----V~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~pN 159 (179)
T 2f42_A 105 DYLCGKISFE-LMREP----CITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPN 159 (179)
T ss_dssp GGGBCTTTCS-BCSSE----EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEEC
T ss_pred HhhcccCccc-cCCCC----eECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcch
Confidence 4679999995 99999 5679999999999999998754479999999976554433
No 37
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.28 E-value=2.9e-12 Score=74.71 Aligned_cols=50 Identities=26% Similarity=0.570 Sum_probs=39.5
Q ss_pred CCccCcccCCCcccCCCCcccccccCCccchhHHHHHhhcCCCCCCCCCccc
Q psy17995 2 DDQECPRCKTTKYRKPTLKLMVNICGHPLCEGCVDLLFLKGTGNCYECNQPL 53 (120)
Q Consensus 2 d~~~CpiC~~~~~~~p~~~~~~~~CGH~fC~~Ci~~~~~~~~~~CP~C~~~~ 53 (120)
++..|+||++ .+.+.....++.+|||.||..|+..++..+ ..||+|+..+
T Consensus 4 ~~~~C~IC~~-~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~ 53 (55)
T 2ecm_A 4 GSSGCPICLE-DIHTSRVVAHVLPCGHLLHRTCYEEMLKEG-YRCPLCSGPS 53 (55)
T ss_dssp CCCSCTTTCC-CCCTTTSCEEECTTSCEEETTHHHHHHHHT-CCCTTSCCSS
T ss_pred CCCcCcccCh-hhcCCCcCeEecCCCCcccHHHHHHHHHcC-CcCCCCCCcC
Confidence 4678999996 555533333456999999999999988875 8899999876
No 38
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=3.3e-12 Score=75.13 Aligned_cols=43 Identities=23% Similarity=0.697 Sum_probs=35.8
Q ss_pred CCccCcccCCCcccCCCCcccccccCCccchhHHHHHhhc--CCCCCCCC
Q psy17995 2 DDQECPRCKTTKYRKPTLKLMVNICGHPLCEGCVDLLFLK--GTGNCYEC 49 (120)
Q Consensus 2 d~~~CpiC~~~~~~~p~~~~~~~~CGH~fC~~Ci~~~~~~--~~~~CP~C 49 (120)
+.+.||||++ .+.+| ++++|||.||..||..++.. ....||+|
T Consensus 14 ~~~~C~IC~~-~~~~p----~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 14 VEASCSVCLE-YLKEP----VIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCBCSSSCC-BCSSC----CCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cCCCCccCCc-ccCcc----EeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 4679999995 78888 35699999999999998764 45789998
No 39
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=6.1e-13 Score=81.93 Aligned_cols=48 Identities=27% Similarity=0.514 Sum_probs=40.0
Q ss_pred CCccCcccCCCcccCCCCcccccccCCccchhHHHHHhhcCCCCCCCCCccccC
Q psy17995 2 DDQECPRCKTTKYRKPTLKLMVNICGHPLCEGCVDLLFLKGTGNCYECNQPLRR 55 (120)
Q Consensus 2 d~~~CpiC~~~~~~~p~~~~~~~~CGH~fC~~Ci~~~~~~~~~~CP~C~~~~~~ 55 (120)
+++.|+||++ .+.+| ++++|||.||..||..++..+ ..||+|+..+..
T Consensus 14 ~~~~C~IC~~-~~~~~----~~~~CgH~fC~~Ci~~~~~~~-~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 14 TVPECAICLQ-TCVHP----VSLPCKHVFCYLCVKGASWLG-KRCALCRQEIPE 61 (71)
T ss_dssp SCCBCSSSSS-BCSSE----EEETTTEEEEHHHHHHCTTCS-SBCSSSCCBCCH
T ss_pred CCCCCccCCc-ccCCC----EEccCCCHHHHHHHHHHHHCC-CcCcCcCchhCH
Confidence 4678999995 77887 456999999999999877654 789999998864
No 40
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=2e-12 Score=78.45 Aligned_cols=52 Identities=21% Similarity=0.618 Sum_probs=40.4
Q ss_pred CCccCcccCCCcccCCC---CcccccccCCccchhHHHHHhhcCCCCCCCCCccccC
Q psy17995 2 DDQECPRCKTTKYRKPT---LKLMVNICGHPLCEGCVDLLFLKGTGNCYECNQPLRR 55 (120)
Q Consensus 2 d~~~CpiC~~~~~~~p~---~~~~~~~CGH~fC~~Ci~~~~~~~~~~CP~C~~~~~~ 55 (120)
+...|+||++ .+.+|. ..+++.+|||.||..||..++.. ...||+|+..+.+
T Consensus 14 ~~~~C~IC~~-~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 14 GTVSCPICMD-GYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 68 (69)
T ss_dssp CCCCCTTTCC-CHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH-CSSCTTTCCCCCC
T ss_pred CCCCCcccCc-cccccccccCCeEeCCCCChhcHHHHHHHHHc-CCCCCCCCCccCc
Confidence 4578999996 666652 12235699999999999998876 4789999998764
No 41
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.23 E-value=6.1e-12 Score=78.45 Aligned_cols=57 Identities=23% Similarity=0.476 Sum_probs=43.9
Q ss_pred CCccCcccCCCcccCCCCcccccccCCccchhHHHHHhhcCCCCCCCCCccccCCCCccc
Q psy17995 2 DDQECPRCKTTKYRKPTLKLMVNICGHPLCEGCVDLLFLKGTGNCYECNQPLRRGNFRVQ 61 (120)
Q Consensus 2 d~~~CpiC~~~~~~~p~~~~~~~~CGH~fC~~Ci~~~~~~~~~~CP~C~~~~~~~~~~~~ 61 (120)
+...|+||++ .+.++.. +.+.+|||.||..||..++... ..||+|+..+...++..+
T Consensus 14 ~~~~C~IC~~-~~~~~~~-~~~~~C~H~fc~~Ci~~~~~~~-~~CP~Cr~~~~~~~~~~~ 70 (78)
T 2ect_A 14 SGLECPVCKE-DYALGES-VRQLPCNHLFHDSCIVPWLEQH-DSCPVCRKSLTGQNTATN 70 (78)
T ss_dssp SSCCCTTTTS-CCCTTSC-EEECTTSCEEETTTTHHHHTTT-CSCTTTCCCCCCSCSCCC
T ss_pred CCCCCeeCCc-cccCCCC-EEEeCCCCeecHHHHHHHHHcC-CcCcCcCCccCCcccCCC
Confidence 4578999996 6666642 2345899999999999988754 789999999987665443
No 42
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.23 E-value=3.6e-12 Score=75.49 Aligned_cols=45 Identities=27% Similarity=0.676 Sum_probs=37.3
Q ss_pred CCccCcccCCCcccCCCCcccccccCCccchhHHHHHhhcCCCCCCCCCccccC
Q psy17995 2 DDQECPRCKTTKYRKPTLKLMVNICGHPLCEGCVDLLFLKGTGNCYECNQPLRR 55 (120)
Q Consensus 2 d~~~CpiC~~~~~~~p~~~~~~~~CGH~fC~~Ci~~~~~~~~~~CP~C~~~~~~ 55 (120)
+.+.|+||++ .+.+| ++.+|||+||..|+.. ....||+|++.+..
T Consensus 5 ~~~~C~IC~~-~~~~p----~~l~CgH~fC~~Ci~~----~~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 5 QFLRCQQCQA-EAKCP----KLLPCLHTLCSGCLEA----SGMQCPICQAPWPL 49 (56)
T ss_dssp CCSSCSSSCS-SCBCC----SCSTTSCCSBTTTCSS----SSSSCSSCCSSSSC
T ss_pred cCCCceEeCC-ccCCe----EEcCCCCcccHHHHcc----CCCCCCcCCcEeec
Confidence 5679999995 88888 4569999999999876 35789999998753
No 43
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.20 E-value=4.7e-12 Score=85.32 Aligned_cols=60 Identities=18% Similarity=0.542 Sum_probs=46.5
Q ss_pred CCccCcccCCCcccCC---CCcccccccCCccchhHHHHHhhcCCCCCCCCCccccCCCCccccc
Q psy17995 2 DDQECPRCKTTKYRKP---TLKLMVNICGHPLCEGCVDLLFLKGTGNCYECNQPLRRGNFRVQLF 63 (120)
Q Consensus 2 d~~~CpiC~~~~~~~p---~~~~~~~~CGH~fC~~Ci~~~~~~~~~~CP~C~~~~~~~~~~~~~f 63 (120)
+++.||||++ .+.+| ....++++|||.||..||..++..+ ..||+|++.+...++....+
T Consensus 6 ~~~~C~IC~~-~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~~~~l~~l~i 68 (133)
T 4ap4_A 6 GTVSCPICMD-GYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA-NTCPTCRKKINHKRYHPIYI 68 (133)
T ss_dssp CSCBCTTTCC-BHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTC-SBCTTTCCBCTTTCEEECBC
T ss_pred CCCCCcccCh-hhhCccccccCeEecCCCChhhHHHHHHHHHhC-CCCCCCCCcCcccccccccc
Confidence 5689999995 67776 2222456999999999999988764 69999999998776655443
No 44
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=99.18 E-value=8.4e-12 Score=95.12 Aligned_cols=55 Identities=20% Similarity=0.455 Sum_probs=45.4
Q ss_pred CCccCcccCCCcccCCCCccccc-ccCCccchhHHHHHhhc-CCCCCCC--CCccccCCCCccc
Q psy17995 2 DDQECPRCKTTKYRKPTLKLMVN-ICGHPLCEGCVDLLFLK-GTGNCYE--CNQPLRRGNFRVQ 61 (120)
Q Consensus 2 d~~~CpiC~~~~~~~p~~~~~~~-~CGH~fC~~Ci~~~~~~-~~~~CP~--C~~~~~~~~~~~~ 61 (120)
.++.||||+. ++.+| |++ .|||+||+.||..+|.. +...||+ |++.+...+++++
T Consensus 180 ~el~CPIcl~-~f~DP----Vts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN 238 (267)
T 3htk_C 180 IELTCPITCK-PYEAP----LISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRD 238 (267)
T ss_dssp CCSBCTTTSS-BCSSE----EEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEEC
T ss_pred eeeECcCccC-cccCC----eeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcC
Confidence 3579999995 89999 444 99999999999999986 3468999 9999887666543
No 45
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.16 E-value=2.7e-11 Score=70.65 Aligned_cols=49 Identities=24% Similarity=0.525 Sum_probs=36.7
Q ss_pred CCccCcccCCCcccCCCCccccc-ccCCccchhHHHHHhhcCCCCCCCCCccc
Q psy17995 2 DDQECPRCKTTKYRKPTLKLMVN-ICGHPLCEGCVDLLFLKGTGNCYECNQPL 53 (120)
Q Consensus 2 d~~~CpiC~~~~~~~p~~~~~~~-~CGH~fC~~Ci~~~~~~~~~~CP~C~~~~ 53 (120)
++..|+||++ .+.+.... ++. .|||.||..|+..++.. ...||.|++.+
T Consensus 4 ~~~~C~IC~~-~~~~~~~~-~~~~~C~H~f~~~Ci~~w~~~-~~~CP~Cr~~~ 53 (55)
T 1iym_A 4 DGVECAVCLA-ELEDGEEA-RFLPRCGHGFHAECVDMWLGS-HSTCPLCRLTV 53 (55)
T ss_dssp CSCCCTTTCC-CCCTTSCC-EECSSSCCEECTTHHHHTTTT-CCSCSSSCCCS
T ss_pred CCCcCccCCc-cccCCCce-EECCCCCCcccHHHHHHHHHc-CCcCcCCCCEe
Confidence 4578999996 55553221 234 49999999999987765 47899999875
No 46
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.16 E-value=2.1e-11 Score=74.02 Aligned_cols=48 Identities=23% Similarity=0.546 Sum_probs=38.8
Q ss_pred CCccCcccCCCcccCCCCcccccccCCccchhHHHHHhhcCCCCCCCCCcccc
Q psy17995 2 DDQECPRCKTTKYRKPTLKLMVNICGHPLCEGCVDLLFLKGTGNCYECNQPLR 54 (120)
Q Consensus 2 d~~~CpiC~~~~~~~p~~~~~~~~CGH~fC~~Ci~~~~~~~~~~CP~C~~~~~ 54 (120)
++..||||++ .+.+|. ++.+|||.||..|+..++..+ ..||.|+..+.
T Consensus 4 ~~~~C~IC~~-~~~~~~---~~~~C~H~fc~~Ci~~~~~~~-~~CP~Cr~~~~ 51 (68)
T 1chc_A 4 VAERCPICLE-DPSNYS---MALPCLHAFCYVCITRWIRQN-PTCPLCKVPVE 51 (68)
T ss_dssp CCCCCSSCCS-CCCSCE---EETTTTEEESTTHHHHHHHHS-CSTTTTCCCCC
T ss_pred CCCCCeeCCc-cccCCc---EecCCCCeeHHHHHHHHHhCc-CcCcCCChhhH
Confidence 3468999996 666652 356999999999999987754 78999999885
No 47
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.11 E-value=8e-11 Score=71.66 Aligned_cols=50 Identities=18% Similarity=0.451 Sum_probs=38.1
Q ss_pred CccCcccCCCcccCCCCcccccccCCccchhHHHHHhhcCCCCCCCCCccccC
Q psy17995 3 DQECPRCKTTKYRKPTLKLMVNICGHPLCEGCVDLLFLKGTGNCYECNQPLRR 55 (120)
Q Consensus 3 ~~~CpiC~~~~~~~p~~~~~~~~CGH~fC~~Ci~~~~~~~~~~CP~C~~~~~~ 55 (120)
+..|+||++ .+.++. ..++.+|||.||..||..++..+ ..||+|+..+..
T Consensus 14 ~~~C~IC~~-~~~~~~-~~~~~~C~H~fc~~Ci~~~~~~~-~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 14 EEKCTICLS-ILEEGE-DVRRLPCMHLFHQVCVDQWLITN-KKCPICRVDIEA 63 (69)
T ss_dssp CCSBTTTTB-CCCSSS-CEEECTTSCEEEHHHHHHHHHHC-SBCTTTCSBSCS
T ss_pred CCCCeeCCc-cccCCC-cEEEeCCCCHHHHHHHHHHHHcC-CCCcCcCccccC
Confidence 468999996 444322 22356999999999999988764 579999998864
No 48
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.10 E-value=6.2e-11 Score=73.08 Aligned_cols=51 Identities=20% Similarity=0.412 Sum_probs=39.8
Q ss_pred CCccCcccCCCcccCCCCcccccccCCccchhHHHHHhhcCCCCCCCCCccccC
Q psy17995 2 DDQECPRCKTTKYRKPTLKLMVNICGHPLCEGCVDLLFLKGTGNCYECNQPLRR 55 (120)
Q Consensus 2 d~~~CpiC~~~~~~~p~~~~~~~~CGH~fC~~Ci~~~~~~~~~~CP~C~~~~~~ 55 (120)
++..|+||++ .+.++.. +.+.+|||.||..||..++... ..||.|+..+..
T Consensus 14 ~~~~C~IC~~-~~~~~~~-~~~~~C~H~f~~~Ci~~~~~~~-~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 14 LHELCAVCLE-DFKPRDE-LGICPCKHAFHRKCLIKWLEVR-KVCPLCNMPVLQ 64 (74)
T ss_dssp CSCBCSSSCC-BCCSSSC-EEEETTTEEEEHHHHHHHHHHC-SBCTTTCCBCSS
T ss_pred CCCCCcCCCc-ccCCCCc-EEEcCCCCEecHHHHHHHHHcC-CcCCCcCccccc
Confidence 3568999996 6666633 2334899999999999988764 589999998864
No 49
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.10 E-value=6e-11 Score=78.79 Aligned_cols=52 Identities=17% Similarity=0.447 Sum_probs=38.7
Q ss_pred CccCcccCCCcccCCC--------------CcccccccCCccchhHHHHHhhc----CCCCCCCCCccccC
Q psy17995 3 DQECPRCKTTKYRKPT--------------LKLMVNICGHPLCEGCVDLLFLK----GTGNCYECNQPLRR 55 (120)
Q Consensus 3 ~~~CpiC~~~~~~~p~--------------~~~~~~~CGH~fC~~Ci~~~~~~----~~~~CP~C~~~~~~ 55 (120)
+..||||++ .+.+|. ....+.+|||.||..||..++.. ....||+|++.+..
T Consensus 25 ~~~C~ICl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 25 EEDCIICME-KLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp SCEETTTTE-ETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CCcCccCCh-hhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 458999996 555442 22224699999999999998853 34689999998854
No 50
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.09 E-value=3.3e-11 Score=74.73 Aligned_cols=51 Identities=22% Similarity=0.440 Sum_probs=39.6
Q ss_pred CCccCcccCCCcccCCCCcccccccCCccchhHHHHHhhcCCCCCCCCCccccC
Q psy17995 2 DDQECPRCKTTKYRKPTLKLMVNICGHPLCEGCVDLLFLKGTGNCYECNQPLRR 55 (120)
Q Consensus 2 d~~~CpiC~~~~~~~p~~~~~~~~CGH~fC~~Ci~~~~~~~~~~CP~C~~~~~~ 55 (120)
++..|+||++ .+.++. .+...+|||.||..||..++... ..||+|+..+..
T Consensus 22 ~~~~C~IC~~-~~~~~~-~~~~l~C~H~fh~~Ci~~w~~~~-~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 22 EQTLCVVCMC-DFESRQ-LLRVLPCNHEFHAKCVDKWLKAN-RTCPICRADSGP 72 (75)
T ss_dssp SCCEETTTTE-ECCBTC-EEEEETTTEEEETTHHHHHHHHC-SSCTTTCCCCCC
T ss_pred CCCCCeECCc-ccCCCC-eEEEECCCCHhHHHHHHHHHHcC-CcCcCcCCcCCC
Confidence 3568999996 555553 22346899999999999988764 689999998764
No 51
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.08 E-value=2e-11 Score=74.62 Aligned_cols=48 Identities=25% Similarity=0.609 Sum_probs=38.6
Q ss_pred CCccCcccCCCcccCCCCcccccccCCccchhHHHHHhhcCCCCCCCCCccccCC
Q psy17995 2 DDQECPRCKTTKYRKPTLKLMVNICGHPLCEGCVDLLFLKGTGNCYECNQPLRRG 56 (120)
Q Consensus 2 d~~~CpiC~~~~~~~p~~~~~~~~CGH~fC~~Ci~~~~~~~~~~CP~C~~~~~~~ 56 (120)
+...|+||++ .+.+ ++.+|||.||..|+..++. ....||.|+..+...
T Consensus 14 ~~~~C~IC~~-~~~~-----~~~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~~ 61 (70)
T 2ecn_A 14 DEEECCICMD-GRAD-----LILPCAHSFCQKCIDKWSD-RHRNCPICRLQMTGA 61 (70)
T ss_dssp CCCCCSSSCC-SCCS-----EEETTTEEECHHHHHHSSC-CCSSCHHHHHCTTCC
T ss_pred CCCCCeeCCc-CccC-----cccCCCCcccHHHHHHHHH-CcCcCCCcCCcccCC
Confidence 4578999996 5444 3679999999999998766 458999999988754
No 52
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.02 E-value=9.5e-11 Score=72.97 Aligned_cols=43 Identities=21% Similarity=0.567 Sum_probs=35.3
Q ss_pred CccCcccCCCcccCCCCcccccccCCc-cchhHHHHHhhcCCCCCCCCCccccC
Q psy17995 3 DQECPRCKTTKYRKPTLKLMVNICGHP-LCEGCVDLLFLKGTGNCYECNQPLRR 55 (120)
Q Consensus 3 ~~~CpiC~~~~~~~p~~~~~~~~CGH~-fC~~Ci~~~~~~~~~~CP~C~~~~~~ 55 (120)
+..|+||++ .+.+| +..+|||. ||..|+.. ...||.|+..+..
T Consensus 25 ~~~C~IC~~-~~~~~----~~~pCgH~~~C~~C~~~-----~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 25 EKLCKICMD-RNIAI----VFVPCGHLVTCKQCAEA-----VDKCPMCYTVITF 68 (75)
T ss_dssp HHSCSSSCS-SCCCB----CCSSSCCCCBCHHHHHH-----CSBCTTTCCBCCC
T ss_pred CCCCCcCCC-CCCCE----EEecCCCHHHHHHHhhC-----CCCCccCCceecC
Confidence 357999995 67887 35699999 99999964 3689999998864
No 53
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.02 E-value=5.5e-11 Score=74.02 Aligned_cols=43 Identities=21% Similarity=0.581 Sum_probs=35.6
Q ss_pred CccCcccCCCcccCCCCcccccccCCc-cchhHHHHHhhcCCCCCCCCCccccC
Q psy17995 3 DQECPRCKTTKYRKPTLKLMVNICGHP-LCEGCVDLLFLKGTGNCYECNQPLRR 55 (120)
Q Consensus 3 ~~~CpiC~~~~~~~p~~~~~~~~CGH~-fC~~Ci~~~~~~~~~~CP~C~~~~~~ 55 (120)
+..|+||++ .+.+| +..+|||. ||..|+..+ ..||.|++.+..
T Consensus 24 ~~~C~iC~~-~~~~~----~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 24 EKLCKICMD-RNIAI----VFVPCGHLVTCKQCAEAV-----DKCPMCYTVITF 67 (74)
T ss_dssp HTBCTTTSS-SBCCE----EEETTCCBCCCHHHHTTC-----SBCTTTCCBCSE
T ss_pred CCCCCCCCC-CCCCE----EEcCCCChhHHHHhhhcC-----ccCCCcCcCccC
Confidence 468999995 67877 34599999 999999764 689999998864
No 54
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.00 E-value=1.3e-10 Score=74.92 Aligned_cols=49 Identities=27% Similarity=0.550 Sum_probs=37.3
Q ss_pred CccCcccCCCcccCCCCcccccccCCccchhHHHHHhhcCCCCCCCCCcccc
Q psy17995 3 DQECPRCKTTKYRKPTLKLMVNICGHPLCEGCVDLLFLKGTGNCYECNQPLR 54 (120)
Q Consensus 3 ~~~CpiC~~~~~~~p~~~~~~~~CGH~fC~~Ci~~~~~~~~~~CP~C~~~~~ 54 (120)
+..|+||++ .+.+.. ...+.+|||.||..||..++.. ...||.|+..+.
T Consensus 40 ~~~C~IC~~-~~~~~~-~~~~l~C~H~Fh~~Ci~~wl~~-~~~CP~Cr~~~~ 88 (91)
T 2l0b_A 40 EMCCPICCS-EYVKGD-VATELPCHHYFHKPCVSIWLQK-SGTCPVCRCMFP 88 (91)
T ss_dssp CSEETTTTE-ECCTTC-EEEEETTTEEEEHHHHHHHHTT-TCBCTTTCCBSS
T ss_pred CCCCcccCh-hhcCCC-cEEecCCCChHHHHHHHHHHHc-CCcCcCcCccCC
Confidence 467999996 444422 2234689999999999998775 468999998775
No 55
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.98 E-value=1.2e-10 Score=78.29 Aligned_cols=56 Identities=20% Similarity=0.596 Sum_probs=41.9
Q ss_pred CCccCcccCCCcccCC---CCcccccccCCccchhHHHHHhhcCCCCCCCCCccccCCCCc
Q psy17995 2 DDQECPRCKTTKYRKP---TLKLMVNICGHPLCEGCVDLLFLKGTGNCYECNQPLRRGNFR 59 (120)
Q Consensus 2 d~~~CpiC~~~~~~~p---~~~~~~~~CGH~fC~~Ci~~~~~~~~~~CP~C~~~~~~~~~~ 59 (120)
+...|+||++ .+.+| ....+..+|||.||..||..++... ..||+|+..+.++++.
T Consensus 71 ~~~~C~iC~~-~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~~~~~~ 129 (133)
T 4ap4_A 71 GTVSCPICMD-GYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA-NTCPTCRKKINHKRYH 129 (133)
T ss_dssp SSCBCTTTCC-BHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHC-SBCTTTCCBCCGGGEE
T ss_pred CCCCCCCCCC-ccccccccCcceEeCCCCChhhHHHHHHHHHcC-CCCCCCCCcCChhcce
Confidence 3568999995 55554 1111346999999999999988764 7999999999876554
No 56
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.92 E-value=6.2e-10 Score=70.30 Aligned_cols=52 Identities=19% Similarity=0.434 Sum_probs=37.6
Q ss_pred CCccCcccCCCcccCC----------CCccccc-ccCCccchhHHHHHhhcCCCCCCCCCccccC
Q psy17995 2 DDQECPRCKTTKYRKP----------TLKLMVN-ICGHPLCEGCVDLLFLKGTGNCYECNQPLRR 55 (120)
Q Consensus 2 d~~~CpiC~~~~~~~p----------~~~~~~~-~CGH~fC~~Ci~~~~~~~~~~CP~C~~~~~~ 55 (120)
++..|+||++ .+.++ ....++. +|||.|+..||...+... ..||+|++.+..
T Consensus 14 ~~~~C~IC~~-~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~-~~CP~CR~~~~~ 76 (81)
T 2ecl_A 14 ECDTCAICRV-QVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQN-NRCPLCQQDWVV 76 (81)
T ss_dssp CCSCBTTTTB-CTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTC-CBCTTTCCBCCE
T ss_pred CCCCCcccCh-hhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhC-CCCCCcCCCcch
Confidence 4567999996 44442 1112233 699999999999987764 689999998753
No 57
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.91 E-value=5.1e-10 Score=67.92 Aligned_cols=47 Identities=23% Similarity=0.522 Sum_probs=37.3
Q ss_pred CCccCcccCCCcccCCCCccccc--ccCCc-cchhHHHHHhhcCCCCCCCCCcccc
Q psy17995 2 DDQECPRCKTTKYRKPTLKLMVN--ICGHP-LCEGCVDLLFLKGTGNCYECNQPLR 54 (120)
Q Consensus 2 d~~~CpiC~~~~~~~p~~~~~~~--~CGH~-fC~~Ci~~~~~~~~~~CP~C~~~~~ 54 (120)
++..|+||++ ...++ +.. +|||. ||..|+..++.. ...||+|+.++.
T Consensus 7 ~~~~C~IC~~-~~~~~----~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~ 56 (64)
T 2vje_A 7 AIEPCVICQG-RPKNG----CIVHGKTGHLMACFTCAKKLKKR-NKPCPVCRQPIQ 56 (64)
T ss_dssp GGSCCTTTSS-SCSCE----EEEETTEEEEEECHHHHHHHHHT-TCCCTTTCCCCC
T ss_pred CcCCCCcCCC-CCCCE----EEECCCCCChhhHHHHHHHHHHc-CCcCCCcCcchh
Confidence 3568999996 55655 333 99999 899999998875 468999999875
No 58
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.91 E-value=7.5e-10 Score=88.42 Aligned_cols=48 Identities=21% Similarity=0.520 Sum_probs=39.9
Q ss_pred ccCcccCCCcccCCCCcccccccCCccchhHHHHHhhcCCCCCCCCCccccCC
Q psy17995 4 QECPRCKTTKYRKPTLKLMVNICGHPLCEGCVDLLFLKGTGNCYECNQPLRRG 56 (120)
Q Consensus 4 ~~CpiC~~~~~~~p~~~~~~~~CGH~fC~~Ci~~~~~~~~~~CP~C~~~~~~~ 56 (120)
..|+||.+ .+.+| +.++|||.||..|+..++......||.|+..+...
T Consensus 333 ~~C~ICle-~~~~p----v~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 333 QLCKICAE-NDKDV----KIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGT 380 (389)
T ss_dssp SBCTTTSS-SBCCE----EEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEE
T ss_pred CCCCccCc-CCCCe----EEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCc
Confidence 68999995 66777 45799999999999887764568999999988643
No 59
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.90 E-value=6e-10 Score=67.40 Aligned_cols=48 Identities=23% Similarity=0.541 Sum_probs=37.3
Q ss_pred CccCcccCCCcccCCCCcccccccCCc-cchhHHHHHhhcCCCCCCCCCcccc
Q psy17995 3 DQECPRCKTTKYRKPTLKLMVNICGHP-LCEGCVDLLFLKGTGNCYECNQPLR 54 (120)
Q Consensus 3 ~~~CpiC~~~~~~~p~~~~~~~~CGH~-fC~~Ci~~~~~~~~~~CP~C~~~~~ 54 (120)
+..|+||++ ...++. ++..+|||. ||..|+..++..+ ..||+|++++.
T Consensus 7 ~~~C~IC~~-~~~~~~--~~~~pCgH~~~C~~C~~~~~~~~-~~CPiCR~~i~ 55 (63)
T 2vje_B 7 LKPCSLCEK-RPRDGN--IIHGRTGHLVTCFHCARRLKKAG-ASCPICKKEIQ 55 (63)
T ss_dssp GSBCTTTSS-SBSCEE--EEETTEEEEEECHHHHHHHHHTT-CBCTTTCCBCC
T ss_pred CCCCcccCC-cCCCeE--EEecCCCCHhHHHHHHHHHHHhC-CcCCCcCchhh
Confidence 458999995 555551 122499999 9999999988764 78999999885
No 60
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.85 E-value=7.9e-10 Score=71.37 Aligned_cols=49 Identities=18% Similarity=0.516 Sum_probs=36.8
Q ss_pred CCccCcccCCCcccCCCCcccccccCCccchhHHHHHhhc----C---CCCCCC--CCcc
Q psy17995 2 DDQECPRCKTTKYRKPTLKLMVNICGHPLCEGCVDLLFLK----G---TGNCYE--CNQP 52 (120)
Q Consensus 2 d~~~CpiC~~~~~~~p~~~~~~~~CGH~fC~~Ci~~~~~~----~---~~~CP~--C~~~ 52 (120)
+.+.||||++ .+..|.+. ...+|||+||..|+..+|.. + +..||. |+..
T Consensus 4 ~~~~C~IC~~-~~~~~~~~-~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLG-EYPVEQMT-TIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCC-CCBGGGEE-EETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCc-ccccccce-EcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 3578999996 56666321 11379999999999999873 2 357999 9987
No 61
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.79 E-value=1.8e-09 Score=65.18 Aligned_cols=54 Identities=15% Similarity=0.160 Sum_probs=45.2
Q ss_pred CccCcccCCCcccCCCCccccc-ccCCccchhHHHHHhhcCCCCCCCCCccccCCCCcccc
Q psy17995 3 DQECPRCKTTKYRKPTLKLMVN-ICGHPLCEGCVDLLFLKGTGNCYECNQPLRRGNFRVQL 62 (120)
Q Consensus 3 ~~~CpiC~~~~~~~p~~~~~~~-~CGH~fC~~Ci~~~~~~~~~~CP~C~~~~~~~~~~~~~ 62 (120)
.+.|||+++ ++.|| +++ ++||.|++.||.+++..+ ..||+.+.++...++.+..
T Consensus 3 ~~~CpIs~~-~m~dP----V~~~~sG~~yer~~I~~~l~~~-~~cP~t~~~L~~~~Lip~~ 57 (61)
T 2bay_A 3 HMLCAISGK-VPRRP----VLSPKSRTIFEKSLLEQYVKDT-GNDPITNEPLSIEEIVEIV 57 (61)
T ss_dssp -CCCTTTCS-CCSSE----EEETTTTEEEEHHHHHHHHHHH-SBCTTTCCBCCGGGCEECC
T ss_pred eEEecCCCC-CCCCC----EEeCCCCcEEcHHHHHHHHHhC-CCCcCCcCCCChhhcEECc
Confidence 478999995 88999 667 899999999999999864 4699999999877766543
No 62
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.79 E-value=9.8e-10 Score=69.36 Aligned_cols=43 Identities=26% Similarity=0.591 Sum_probs=34.8
Q ss_pred CccCcccCCCcccCCCCcccccccCCc-cchhHHHHHhhcCCCCCCCCCccccC
Q psy17995 3 DQECPRCKTTKYRKPTLKLMVNICGHP-LCEGCVDLLFLKGTGNCYECNQPLRR 55 (120)
Q Consensus 3 ~~~CpiC~~~~~~~p~~~~~~~~CGH~-fC~~Ci~~~~~~~~~~CP~C~~~~~~ 55 (120)
+..|+||++ ...+| +..+|||. ||..|+..+ ..||.|+..+..
T Consensus 18 ~~~C~IC~~-~~~~~----v~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~ 61 (79)
T 2yho_A 18 AMLCMVCCE-EEINS----TFCPCGHTVCCESCAAQL-----QSCPVCRSRVEH 61 (79)
T ss_dssp HTBCTTTSS-SBCCE----EEETTCBCCBCHHHHTTC-----SBCTTTCCBCCE
T ss_pred CCEeEEeCc-ccCcE----EEECCCCHHHHHHHHHhc-----CcCCCCCchhhC
Confidence 357999995 66776 44699999 999999764 489999998864
No 63
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.78 E-value=4.4e-09 Score=64.56 Aligned_cols=44 Identities=27% Similarity=0.696 Sum_probs=35.1
Q ss_pred CCccCcccCCCcccCCCCcccccccCCc-cchhHHHHHhhcCCCCCCCCCccccC
Q psy17995 2 DDQECPRCKTTKYRKPTLKLMVNICGHP-LCEGCVDLLFLKGTGNCYECNQPLRR 55 (120)
Q Consensus 2 d~~~CpiC~~~~~~~p~~~~~~~~CGH~-fC~~Ci~~~~~~~~~~CP~C~~~~~~ 55 (120)
++..|+||++ ...++ +..||||. ||..|+.. ...||+|+..+..
T Consensus 14 ~~~~C~IC~~-~~~~~----v~~pCgH~~~C~~C~~~-----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 14 NSKDCVVCQN-GTVNW----VLLPCRHTCLCDGCVKY-----FQQCPMCRQFVQE 58 (68)
T ss_dssp CSSCCSSSSS-SCCCC----EETTTTBCCSCTTHHHH-----CSSCTTTCCCCCC
T ss_pred CCCCCCCcCc-CCCCE----EEECCCChhhhHHHHhc-----CCCCCCCCcchhc
Confidence 4568999995 55655 45699999 99999984 3689999998864
No 64
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.70 E-value=1.7e-08 Score=67.19 Aligned_cols=51 Identities=14% Similarity=0.329 Sum_probs=38.3
Q ss_pred CCccCcccCCCcccCCCC--------------cccccccCCccchhHHHHHhhcCCCCCCCCCcccc
Q psy17995 2 DDQECPRCKTTKYRKPTL--------------KLMVNICGHPLCEGCVDLLFLKGTGNCYECNQPLR 54 (120)
Q Consensus 2 d~~~CpiC~~~~~~~p~~--------------~~~~~~CGH~fC~~Ci~~~~~~~~~~CP~C~~~~~ 54 (120)
++..|+||++ .|.++-. .++..+|||.|+..||...+.. ...||+|+..+.
T Consensus 36 ~~d~CaIC~~-~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRN-HIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCS-CTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT-CSBCSSSCSBCC
T ss_pred CCCCCccCCh-hHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc-CCcCcCCCCcce
Confidence 4568999996 5554411 1234699999999999998776 478999999764
No 65
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.61 E-value=9.3e-09 Score=80.94 Aligned_cols=44 Identities=25% Similarity=0.651 Sum_probs=36.4
Q ss_pred CCccCcccCCCcccCCCCcccccccCCc-cchhHHHHHhhcCCCCCCCCCccccC
Q psy17995 2 DDQECPRCKTTKYRKPTLKLMVNICGHP-LCEGCVDLLFLKGTGNCYECNQPLRR 55 (120)
Q Consensus 2 d~~~CpiC~~~~~~~p~~~~~~~~CGH~-fC~~Ci~~~~~~~~~~CP~C~~~~~~ 55 (120)
++..|+||++ .+.+| +..+|||. ||..|+..+ ..||.|+.++..
T Consensus 294 ~~~~C~IC~~-~~~~~----v~lpCgH~~fC~~C~~~~-----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 294 EERTCKVCMD-KEVSV----VFIPCGHLVVCQECAPSL-----RKCPICRGIIKG 338 (345)
T ss_dssp TTCBCTTTSS-SBCCE----EEETTCCEEECTTTGGGC-----SBCTTTCCBCCE
T ss_pred CCCCCCccCC-cCCce----EEcCCCChhHhHHHHhcC-----CcCCCCCCCccC
Confidence 3578999995 77888 34599999 999999864 689999998864
No 66
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.44 E-value=2.9e-08 Score=67.22 Aligned_cols=51 Identities=14% Similarity=0.329 Sum_probs=1.0
Q ss_pred CCccCcccCCCcccCCCC--------------cccccccCCccchhHHHHHhhcCCCCCCCCCcccc
Q psy17995 2 DDQECPRCKTTKYRKPTL--------------KLMVNICGHPLCEGCVDLLFLKGTGNCYECNQPLR 54 (120)
Q Consensus 2 d~~~CpiC~~~~~~~p~~--------------~~~~~~CGH~fC~~Ci~~~~~~~~~~CP~C~~~~~ 54 (120)
++..|+||++ .|.++.. .++..+|||.|+..||...+.. ...||.|+..+.
T Consensus 47 ~~d~CaICl~-~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~-~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 47 VVDNCAICRN-HIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE 111 (117)
T ss_dssp CC-----------------------------------------------------------------
T ss_pred CCCcCeECCh-hhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc-CCcCCCCCCeee
Confidence 4568999996 5554311 1223489999999999998776 478999998764
No 67
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.10 E-value=2.3e-06 Score=53.97 Aligned_cols=49 Identities=16% Similarity=0.398 Sum_probs=37.1
Q ss_pred CccCcccCCCcccCCCCcccccccC-----CccchhHHHHHhhc-CCCCCCCCCcccc
Q psy17995 3 DQECPRCKTTKYRKPTLKLMVNICG-----HPLCEGCVDLLFLK-GTGNCYECNQPLR 54 (120)
Q Consensus 3 ~~~CpiC~~~~~~~p~~~~~~~~CG-----H~fC~~Ci~~~~~~-~~~~CP~C~~~~~ 54 (120)
...|+||++ -+.+. -. ++.+|+ |.|...||.+++.. +...||+|+..+.
T Consensus 15 ~~~C~IC~~-~~~~~-~~-l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~ 69 (80)
T 2d8s_A 15 QDICRICHC-EGDDE-SP-LITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFI 69 (80)
T ss_dssp SCCCSSSCC-CCCSS-SC-EECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCC
T ss_pred CCCCeEcCc-cccCC-Ce-eEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeee
Confidence 468999996 34322 22 357996 99999999998876 3468999999885
No 68
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.96 E-value=3.7e-06 Score=55.32 Aligned_cols=47 Identities=28% Similarity=0.552 Sum_probs=35.2
Q ss_pred cCcccCCCcccCCCCcccccccCCccchhHHHHHhhcCCCCCCCCCccccC
Q psy17995 5 ECPRCKTTKYRKPTLKLMVNICGHPLCEGCVDLLFLKGTGNCYECNQPLRR 55 (120)
Q Consensus 5 ~CpiC~~~~~~~p~~~~~~~~CGH~fC~~Ci~~~~~~~~~~CP~C~~~~~~ 55 (120)
.|++|.- .+.-- ....||+|+||-+|+..+..++...||.|+.++.+
T Consensus 3 fC~~C~~-Pi~iy---gRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGL-PIKVY---GRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQR 49 (101)
T ss_dssp BCTTTCS-BCSEE---EEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred ecCccCC-CeEEE---eeeccccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence 4888873 32211 11459999999999998887777899999998854
No 69
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.80 E-value=1.8e-05 Score=49.37 Aligned_cols=47 Identities=21% Similarity=0.448 Sum_probs=35.9
Q ss_pred ccCcccCCCcccCCCCcccccccCCccchhHHHHHhhcC-CCCCCCCCcccc
Q psy17995 4 QECPRCKTTKYRKPTLKLMVNICGHPLCEGCVDLLFLKG-TGNCYECNQPLR 54 (120)
Q Consensus 4 ~~CpiC~~~~~~~p~~~~~~~~CGH~fC~~Ci~~~~~~~-~~~CP~C~~~~~ 54 (120)
..|+||++ ++. |..+ -..|||.|-..||.++|+.. ...||.|+..+.
T Consensus 16 ~~C~IC~~-~i~-~g~~--C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 16 KICNICHS-LLI-QGQS--CETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 63 (74)
T ss_dssp CBCSSSCC-BCS-SSEE--CSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred CcCcchhh-Hcc-cCCc--cCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence 47999996 544 4321 23899999999999999753 378999998764
No 70
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=97.35 E-value=5.8e-05 Score=59.69 Aligned_cols=50 Identities=20% Similarity=0.338 Sum_probs=36.0
Q ss_pred ccCcccCCCcccC-CCCccc---ccccCCccchhHHHHHhhcC-C---------CCCCCCCcccc
Q psy17995 4 QECPRCKTTKYRK-PTLKLM---VNICGHPLCEGCVDLLFLKG-T---------GNCYECNQPLR 54 (120)
Q Consensus 4 ~~CpiC~~~~~~~-p~~~~~---~~~CGH~fC~~Ci~~~~~~~-~---------~~CP~C~~~~~ 54 (120)
..|+||.+ .+.+ ..++-. -..|||.|-..|+.+++... . ..||-|+.++.
T Consensus 309 ~ECaICys-~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 309 LRCNICFA-YRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CSCSSSCC-SSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred ccCcccce-eecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 46999996 5554 322212 13799999999999988741 1 57999999875
No 71
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=97.31 E-value=0.00014 Score=46.84 Aligned_cols=36 Identities=14% Similarity=0.430 Sum_probs=27.2
Q ss_pred CCCccCcccCCCcccCCCCcccc--cccCCccchhHHHHHhh
Q psy17995 1 MDDQECPRCKTTKYRKPTLKLMV--NICGHPLCEGCVDLLFL 40 (120)
Q Consensus 1 ~d~~~CpiC~~~~~~~p~~~~~~--~~CGH~fC~~Ci~~~~~ 40 (120)
.+++.|++|.++.+.+| +. .+|||+||..|+...+.
T Consensus 1 ~ee~~C~~C~~~~~~~a----v~~C~~C~~~~C~~Cl~~~h~ 38 (101)
T 2jun_A 1 AEKVLCQFCDQDPAQDA----VKTCVTCEVSYCDECLKATHP 38 (101)
T ss_dssp CCCCBCTTCCSSSCCBC----CEEETTTTEEECHHHHHHHSC
T ss_pred CCCCCCcCCCCCCCCCc----eEECCcCChHHhHHHCHHHhc
Confidence 36789999996444555 23 48999999999998443
No 72
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=97.12 E-value=0.001 Score=42.71 Aligned_cols=52 Identities=33% Similarity=0.613 Sum_probs=43.6
Q ss_pred ccCcccCCCcccCCCCcccc--cccCCccchhHHHHHhhcCCCCCCCCCccccC
Q psy17995 4 QECPRCKTTKYRKPTLKLMV--NICGHPLCEGCVDLLFLKGTGNCYECNQPLRR 55 (120)
Q Consensus 4 ~~CpiC~~~~~~~p~~~~~~--~~CGH~fC~~Ci~~~~~~~~~~CP~C~~~~~~ 55 (120)
..|.||.+++-.+.+-.+++ ..|+-.+|+.|...-.+.+...||.|++.+++
T Consensus 17 qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr 70 (93)
T 1weo_A 17 QFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKR 70 (93)
T ss_dssp CBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCC
T ss_pred CccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCcccc
Confidence 47999998877776665555 48999999999998888888999999999874
No 73
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=97.05 E-value=0.00079 Score=39.91 Aligned_cols=46 Identities=15% Similarity=0.385 Sum_probs=34.5
Q ss_pred ccCcccCCCcccCCCCcccccccC--C---ccchhHHHHHhhc-CCCCCCCCCcccc
Q psy17995 4 QECPRCKTTKYRKPTLKLMVNICG--H---PLCEGCVDLLFLK-GTGNCYECNQPLR 54 (120)
Q Consensus 4 ~~CpiC~~~~~~~p~~~~~~~~CG--H---~fC~~Ci~~~~~~-~~~~CP~C~~~~~ 54 (120)
..|.||++. ..+| +++||. | .|-.+|+.+.+.. +...||+|+..+.
T Consensus 7 ~~CrIC~~~-~~~~----l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 7 PVCWICNEE-LGNE----RFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CEETTTTEE-CSCC----CCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CEeEEeecC-CCCc----eecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 479999963 3333 357754 4 8999999998874 5689999998774
No 74
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=95.74 E-value=0.0073 Score=44.95 Aligned_cols=47 Identities=21% Similarity=0.439 Sum_probs=34.5
Q ss_pred ccCcccCCCcccCCCCcccccccCCccchhHHHHHhhcC-CCCCCCCCcccc
Q psy17995 4 QECPRCKTTKYRKPTLKLMVNICGHPLCEGCVDLLFLKG-TGNCYECNQPLR 54 (120)
Q Consensus 4 ~~CpiC~~~~~~~p~~~~~~~~CGH~fC~~Ci~~~~~~~-~~~CP~C~~~~~ 54 (120)
..|.+|++.+ . +..+ -..|||+|-..|+..+++.. ...||.|+....
T Consensus 181 ~~C~iC~~iv-~-~g~~--C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~ 228 (238)
T 3nw0_A 181 KICNICHSLL-I-QGQS--CETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 228 (238)
T ss_dssp CBCTTTCSBC-S-SCEE--CSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCC
T ss_pred CcCcchhhHH-h-CCcc--cCccChHHHHHHHHHHHHhCCCCCCCCCCCCCC
Confidence 4699999643 3 3211 12499999999999998763 478999998754
No 75
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=94.96 E-value=0.0016 Score=42.42 Aligned_cols=42 Identities=31% Similarity=0.873 Sum_probs=27.9
Q ss_pred CCCccCcccCCCcccCCCCcccccccCCccchhHHHHHhhcCCCCCCCCCcccc
Q psy17995 1 MDDQECPRCKTTKYRKPTLKLMVNICGHPLCEGCVDLLFLKGTGNCYECNQPLR 54 (120)
Q Consensus 1 ~d~~~CpiC~~~~~~~p~~~~~~~~CGH~fC~~Ci~~~~~~~~~~CP~C~~~~~ 54 (120)
|+ ..||+|...+..+. |+.+|..|-..+.. .+.||.|+.++.
T Consensus 31 M~-~~CP~Cq~eL~~~g---------~~~hC~~C~~~f~~--~a~CPdC~q~Le 72 (101)
T 2jne_A 31 ME-LHCPQCQHVLDQDN---------GHARCRSCGEFIEM--KALCPDCHQPLQ 72 (101)
T ss_dssp CC-CBCSSSCSBEEEET---------TEEEETTTCCEEEE--EEECTTTCSBCE
T ss_pred cc-ccCccCCCcceecC---------CEEECccccchhhc--cccCcchhhHHH
Confidence 66 78999995332211 45569999654332 368999999874
No 76
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=94.92 E-value=0.0026 Score=40.14 Aligned_cols=41 Identities=34% Similarity=0.758 Sum_probs=25.1
Q ss_pred CCCccCcccCCCcccCCCCcccccccCCccchhHHHHHhhcCCCCCCCCCccc
Q psy17995 1 MDDQECPRCKTTKYRKPTLKLMVNICGHPLCEGCVDLLFLKGTGNCYECNQPL 53 (120)
Q Consensus 1 ~d~~~CpiC~~~~~~~p~~~~~~~~CGH~fC~~Ci~~~~~~~~~~CP~C~~~~ 53 (120)
|+ ..||.|...+..+. |+..|..|-..+-.. ..||.|+.++
T Consensus 1 M~-~~CP~C~~~l~~~~---------~~~~C~~C~~~~~~~--afCPeCgq~L 41 (81)
T 2jrp_A 1 ME-ITCPVCHHALERNG---------DTAHCETCAKDFSLQ--ALCPDCRQPL 41 (81)
T ss_dssp CC-CCCSSSCSCCEECS---------SEEECTTTCCEEEEE--EECSSSCSCC
T ss_pred CC-CCCCCCCCccccCC---------CceECccccccCCCc--ccCcchhhHH
Confidence 67 78999996443332 244477775433222 3788888776
No 77
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=94.91 E-value=0.016 Score=37.53 Aligned_cols=47 Identities=30% Similarity=0.596 Sum_probs=35.4
Q ss_pred CCccCcccCCCcccCCCCcccccccCCccchhHHHHHhhcCCCCCCCCCccccC
Q psy17995 2 DDQECPRCKTTKYRKPTLKLMVNICGHPLCEGCVDLLFLKGTGNCYECNQPLRR 55 (120)
Q Consensus 2 d~~~CpiC~~~~~~~p~~~~~~~~CGH~fC~~Ci~~~~~~~~~~CP~C~~~~~~ 55 (120)
..+.|-.|.- .+-+ +|.-.-|-+|..|+..+++. +..||+|+.++-.
T Consensus 27 G~~nCKsCWf---~~k~---LV~C~dHYLCl~CLtlmL~~-SdrCpIC~~pLPt 73 (99)
T 2ko5_A 27 GPQFCKSCWF---ENKG---LVECNNHYLCLNCLTLLLSV-SNRCPICKMPLPT 73 (99)
T ss_dssp CCCCCCSSCS---CCSS---EEECSSCEEEHHHHHHTCSS-SSEETTTTEECCC
T ss_pred CcccChhhcc---ccCC---eeeecchhhHHHHHHHHHhh-ccCCcccCCcCCc
Confidence 3578888982 2222 36667799999999998876 4789999998853
No 78
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=92.18 E-value=0.11 Score=45.70 Aligned_cols=54 Identities=13% Similarity=0.108 Sum_probs=44.1
Q ss_pred CCccCcccCCCcccCCCCcccccccC-CccchhHHHHHhhcCCCCCCCCCccccCCCCccc
Q psy17995 2 DDQECPRCKTTKYRKPTLKLMVNICG-HPLCEGCVDLLFLKGTGNCYECNQPLRRGNFRVQ 61 (120)
Q Consensus 2 d~~~CpiC~~~~~~~p~~~~~~~~CG-H~fC~~Ci~~~~~~~~~~CP~C~~~~~~~~~~~~ 61 (120)
+++.|||-.+ ++.|| |+.+-| +.+=++.|.+++..+ ..||.-+.++...++.++
T Consensus 890 ~~F~cPIs~~-lM~DP----VilpsG~~TydR~~I~~wl~~~-~tdP~Tr~~L~~~~liPN 944 (968)
T 3m62_A 890 DEFLDPLMYT-IMKDP----VILPASKMNIDRSTIKAHLLSD-STDPFNRMPLKLEDVTPN 944 (968)
T ss_dssp GGGBCTTTCS-BCSSE----EECTTTCCEEEHHHHHHHHTTC-CBCTTTCCBCCGGGCEEC
T ss_pred HHhCCcchhh-HHhCC----eEcCCCCEEECHHHHHHHHhcC-CCCCCCCCCCCccccccc
Confidence 4678999995 99999 567888 589999999988764 689999999986555444
No 79
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=91.63 E-value=0.068 Score=33.44 Aligned_cols=31 Identities=16% Similarity=0.395 Sum_probs=19.8
Q ss_pred CcccCCCcccCCCCccccc-ccCCccchhHHH
Q psy17995 6 CPRCKTTKYRKPTLKLMVN-ICGHPLCEGCVD 36 (120)
Q Consensus 6 CpiC~~~~~~~p~~~~~~~-~CGH~fC~~Ci~ 36 (120)
||-|...+..++....++- .|||.||-.|-.
T Consensus 28 CP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~ 59 (86)
T 2ct7_A 28 CAQCSFGFIYEREQLEATCPQCHQTFCVRCKR 59 (86)
T ss_dssp CSSSCCCEECCCSCSCEECTTTCCEECSSSCS
T ss_pred CcCCCchheecCCCCceEeCCCCCccccccCC
Confidence 9988854444444332333 499999888854
No 80
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=89.63 E-value=0.13 Score=28.79 Aligned_cols=36 Identities=22% Similarity=0.396 Sum_probs=22.4
Q ss_pred CCCccCcccCCCcccCCCCcccccccCCccchhHHHHHhhcCC--CCCCCCCcc
Q psy17995 1 MDDQECPRCKTTKYRKPTLKLMVNICGHPLCEGCVDLLFLKGT--GNCYECNQP 52 (120)
Q Consensus 1 ~d~~~CpiC~~~~~~~p~~~~~~~~CGH~fC~~Ci~~~~~~~~--~~CP~C~~~ 52 (120)
|..+.|++|. .+| +|.. -.+ ..|..-+ ..||+|+..
T Consensus 2 m~~y~C~vCG-yvy-d~~~---Gd~-----------t~f~~lP~dw~CP~Cg~~ 39 (46)
T 6rxn_A 2 MQKYVCNVCG-YEY-DPAE---HDN-----------VPFDQLPDDWCCPVCGVS 39 (46)
T ss_dssp CCCEEETTTC-CEE-CGGG---GTT-----------CCGGGSCTTCBCTTTCCB
T ss_pred CCEEECCCCC-eEE-eCCc---CCC-----------cchhhCCCCCcCcCCCCc
Confidence 7889999999 464 4411 012 3344433 489999974
No 81
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=89.19 E-value=0.25 Score=30.48 Aligned_cols=34 Identities=26% Similarity=0.708 Sum_probs=22.8
Q ss_pred ccCcc--cCCCcccCCCCccccc------ccCCccchhHHHH
Q psy17995 4 QECPR--CKTTKYRKPTLKLMVN------ICGHPLCEGCVDL 37 (120)
Q Consensus 4 ~~Cpi--C~~~~~~~p~~~~~~~------~CGH~fC~~Ci~~ 37 (120)
..||. |...+..++....++= .|||.||-.|...
T Consensus 26 ~~CP~p~C~~~v~~~~~~~~v~C~~~~~~~C~~~FC~~C~~~ 67 (80)
T 2jmo_A 26 VLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEA 67 (80)
T ss_dssp CCCCSSSCCCCCCCCSCTTSBCTTSSSTTCCSCCEETTTTEE
T ss_pred EECCCCCCCcccEECCCCCcCCCCCCCCCCCCCeeccccCcc
Confidence 46887 8865555554333432 5999999999654
No 82
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=86.85 E-value=0.27 Score=29.11 Aligned_cols=37 Identities=35% Similarity=0.835 Sum_probs=24.8
Q ss_pred CCccCcccCCCcccCCCCcccccccCCccchhHHHHHhhcCCCCCCCCCcccc
Q psy17995 2 DDQECPRCKTTKYRKPTLKLMVNICGHPLCEGCVDLLFLKGTGNCYECNQPLR 54 (120)
Q Consensus 2 d~~~CpiC~~~~~~~p~~~~~~~~CGH~fC~~Ci~~~~~~~~~~CP~C~~~~~ 54 (120)
|...|+||+.+.|- ..+||. |..| ....|..|+..+.
T Consensus 8 d~~~C~iC~KTKFA--------DG~Gh~-C~yC-------k~r~CaRCGg~v~ 44 (62)
T 2a20_A 8 DAPTCGICHKTKFA--------DGCGHN-CSYC-------QTKFCARCGGRVS 44 (62)
T ss_dssp CCCCCSSSSCSCCC--------SSCCEE-BTTT-------CCEECTTSEEEEE
T ss_pred Ccchhhhhccceec--------cCCCcc-cccc-------CCeeecccCCEee
Confidence 45689999975433 368886 7777 2456777876543
No 83
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=86.11 E-value=0.53 Score=28.37 Aligned_cols=35 Identities=23% Similarity=0.472 Sum_probs=22.2
Q ss_pred CCccCcccCCCcccCCCCcccccccCCccchhHHHH
Q psy17995 2 DDQECPRCKTTKYRKPTLKLMVNICGHPLCEGCVDL 37 (120)
Q Consensus 2 d~~~CpiC~~~~~~~p~~~~~~~~CGH~fC~~Ci~~ 37 (120)
++..|.+|.. .|.--..+-.-..||+.||..|...
T Consensus 10 ~~~~C~~C~~-~F~~~~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 10 DSDACMICSK-KFSLLNRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp CCSBCTTTCC-BCBTTBCCEECTTTCCEECGGGSCE
T ss_pred cCCcccCCCC-ccCCccccccCCCCCEEEcccccCC
Confidence 4568999995 4432211111237999999999653
No 84
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=83.40 E-value=0.63 Score=26.84 Aligned_cols=41 Identities=20% Similarity=0.222 Sum_probs=24.0
Q ss_pred CCCccCcccCCCcccCCCCcccc--cccCCccchhHHHHHhhc--CCCCCCCCCcc
Q psy17995 1 MDDQECPRCKTTKYRKPTLKLMV--NICGHPLCEGCVDLLFLK--GTGNCYECNQP 52 (120)
Q Consensus 1 ~d~~~CpiC~~~~~~~p~~~~~~--~~CGH~fC~~Ci~~~~~~--~~~~CP~C~~~ 52 (120)
|..+.|++|. .+| +|..---- -+=|..| .. ....||+|+..
T Consensus 1 m~~y~C~vCG-yvY-d~~~Gdp~~gi~pGt~f---------e~lP~dw~CP~Cg~~ 45 (54)
T 4rxn_A 1 MKKYTCTVCG-YIY-DPEDGDPDDGVNPGTDF---------KDIPDDWVCPLCGVG 45 (54)
T ss_dssp CCCEEETTTC-CEE-CTTTCBGGGTBCTTCCG---------GGSCTTCBCTTTCCB
T ss_pred CCceECCCCC-eEE-CCCcCCcccCcCCCCCh---------hHCCCCCcCcCCCCc
Confidence 8899999999 465 33210000 1225554 22 23589999985
No 85
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=83.21 E-value=0.65 Score=36.72 Aligned_cols=51 Identities=24% Similarity=0.405 Sum_probs=33.1
Q ss_pred ccCcccCCCcccCCCCcccccccCCccchhHHHHH---hhcCCCCCCCCCccccCCCC
Q psy17995 4 QECPRCKTTKYRKPTLKLMVNICGHPLCEGCVDLL---FLKGTGNCYECNQPLRRGNF 58 (120)
Q Consensus 4 ~~CpiC~~~~~~~p~~~~~~~~CGH~fC~~Ci~~~---~~~~~~~CP~C~~~~~~~~~ 58 (120)
+.||+-.. .+..|. --..|.|.-|-.-..-+ ...+...||+|++.+...++
T Consensus 250 L~CPlS~~-ri~~Pv---Rg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~dL 303 (371)
T 3i2d_A 250 LQCPISYT-RMKYPS---KSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENL 303 (371)
T ss_dssp SBCTTTSS-BCSSEE---EETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGGE
T ss_pred ecCCCccc-cccccC---cCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHHe
Confidence 68999984 667771 12389999554442222 12356899999998875543
No 86
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=81.68 E-value=1.9 Score=27.07 Aligned_cols=36 Identities=14% Similarity=0.371 Sum_probs=25.5
Q ss_pred CccCcccCCCcccCCCCcccc--cccCCccchhHHHHHhhc
Q psy17995 3 DQECPRCKTTKYRKPTLKLMV--NICGHPLCEGCVDLLFLK 41 (120)
Q Consensus 3 ~~~CpiC~~~~~~~p~~~~~~--~~CGH~fC~~Ci~~~~~~ 41 (120)
.+.|.+|++ .+.+-. +++ +.=+|+||-.|-...++.
T Consensus 15 ~l~CtlC~e-rLEdtH--FVQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 15 PLCCTICHE-RLEDTH--FVQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp SCCCSSSCS-CCSSTT--SEECSSCSSCEECHHHHHHHHHH
T ss_pred eeEeecchh-hhccCc--eeeCCCccCCeeeccccHHHHHh
Confidence 368999996 445543 233 245899999999888764
No 87
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=81.49 E-value=0.84 Score=35.94 Aligned_cols=51 Identities=24% Similarity=0.325 Sum_probs=33.0
Q ss_pred ccCcccCCCcccCCCCcccccccCCccchhHHHHH--h-hcCCCCCCCCCccccCCCC
Q psy17995 4 QECPRCKTTKYRKPTLKLMVNICGHPLCEGCVDLL--F-LKGTGNCYECNQPLRRGNF 58 (120)
Q Consensus 4 ~~CpiC~~~~~~~p~~~~~~~~CGH~fC~~Ci~~~--~-~~~~~~CP~C~~~~~~~~~ 58 (120)
+.||+-.. .+..|- .-..|.|.-|-.-..-+ . ..+...||+|++.+...++
T Consensus 216 L~CPlS~~-ri~~P~---Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL 269 (360)
T 4fo9_A 216 LMCPLGKM-RLTIPC---RAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYESL 269 (360)
T ss_dssp SBCTTTCS-BCSSEE---EETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGGE
T ss_pred eeCCCccc-eeccCC---cCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHHe
Confidence 57999884 667771 12389999554443222 1 2356899999998875443
No 88
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=81.25 E-value=0.82 Score=30.48 Aligned_cols=33 Identities=21% Similarity=0.586 Sum_probs=21.4
Q ss_pred ccCcccCCCcccCCCCcccccccCCccchhHHHH
Q psy17995 4 QECPRCKTTKYRKPTLKLMVNICGHPLCEGCVDL 37 (120)
Q Consensus 4 ~~CpiC~~~~~~~p~~~~~~~~CGH~fC~~Ci~~ 37 (120)
..|.+|.. .|.--..+..-..||+.||..|...
T Consensus 70 ~~C~~C~~-~Fs~~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 70 QNCMACGK-GFSVTVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp CBCTTTCC-BCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCCcCcCC-ccccccccccCCCCCeEEChHHhCC
Confidence 36999995 5542222222247999999999754
No 89
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=79.97 E-value=2.6 Score=26.64 Aligned_cols=33 Identities=21% Similarity=0.692 Sum_probs=22.9
Q ss_pred CccCcccCCCcccCCCCcccccccCCccchhHHHHH
Q psy17995 3 DQECPRCKTTKYRKPTLKLMVNICGHPLCEGCVDLL 38 (120)
Q Consensus 3 ~~~CpiC~~~~~~~p~~~~~~~~CGH~fC~~Ci~~~ 38 (120)
+.+|+||. .+.+..+ +--..||.+|-..|+.+.
T Consensus 15 D~~C~VC~--~~t~~~l-~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 15 DEMCDVCE--VWTAESL-FPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp SCCCTTTC--CCCSSCC-SSCSSSSSCCCHHHHHHH
T ss_pred CcccCccc--cccccce-eccccccccccHhhcccc
Confidence 56899999 3333211 112479999999999996
No 90
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=79.27 E-value=1.3 Score=25.94 Aligned_cols=43 Identities=19% Similarity=0.599 Sum_probs=27.0
Q ss_pred cCcccCCCcccCCCCcccccccCCccchhHHHHHhhcCCCCCCCCC
Q psy17995 5 ECPRCKTTKYRKPTLKLMVNICGHPLCEGCVDLLFLKGTGNCYECN 50 (120)
Q Consensus 5 ~CpiC~~~~~~~p~~~~~~~~CGH~fC~~Ci~~~~~~~~~~CP~C~ 50 (120)
.|-.|.. .+.++. ...-..|++.||..| +.+....--.||.|.
T Consensus 17 ~C~~C~~-~~~~~~-~y~C~~C~~~FC~dC-D~fiHe~Lh~CPgC~ 59 (59)
T 1z60_A 17 FCYGCQG-ELKDQH-VYVCAVCQNVFCVDC-DVFVHDSLHSCPGCI 59 (59)
T ss_dssp EETTTTE-ECTTSE-EECCTTTTCCBCHHH-HHTTTTTSCSSSTTC
T ss_pred cccccCc-ccCCCc-cEECCccCcCcccch-hHHHHhhccCCcCCC
Confidence 4888885 444331 111247999999999 333344446899883
No 91
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=78.24 E-value=2 Score=29.40 Aligned_cols=42 Identities=21% Similarity=0.673 Sum_probs=29.6
Q ss_pred ccCcccCCCcccCCCCcccc-cccCCccchhHHHHHhh----------cCCCCCCCCCc
Q psy17995 4 QECPRCKTTKYRKPTLKLMV-NICGHPLCEGCVDLLFL----------KGTGNCYECNQ 51 (120)
Q Consensus 4 ~~CpiC~~~~~~~p~~~~~~-~~CGH~fC~~Ci~~~~~----------~~~~~CP~C~~ 51 (120)
..|.+|.+.- .++. ..|...||..||...+. .+...||.|..
T Consensus 64 d~C~vC~~GG------~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 64 EQCRWCAEGG------NLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp CSCSSSCCCS------SEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CeecccCCCC------cEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 4688888521 1222 38999999999997652 34578999974
No 92
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=78.07 E-value=1.1 Score=32.35 Aligned_cols=35 Identities=26% Similarity=0.673 Sum_probs=22.3
Q ss_pred CCccCcccCCCcccCCCCcccccccCCccchhHHHH
Q psy17995 2 DDQECPRCKTTKYRKPTLKLMVNICGHPLCEGCVDL 37 (120)
Q Consensus 2 d~~~CpiC~~~~~~~p~~~~~~~~CGH~fC~~Ci~~ 37 (120)
++..|++|.. .|.--..+..-..||+.||..|...
T Consensus 160 ~~~~C~~C~~-~F~~~~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 160 DGRVCHRCRV-EFTFTNRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp CCSBCTTTCC-BCCSSSCCEECTTTCCEECSTTSCE
T ss_pred CCCccCCCCC-ccCCcccccccCCcCCEEChHHhCC
Confidence 3458999985 5532212222247999999999654
No 93
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=78.04 E-value=2.1 Score=27.35 Aligned_cols=12 Identities=33% Similarity=0.852 Sum_probs=10.0
Q ss_pred CCCCCCCCcccc
Q psy17995 43 TGNCYECNQPLR 54 (120)
Q Consensus 43 ~~~CP~C~~~~~ 54 (120)
..+||+||.++.
T Consensus 47 g~~CPvCgs~l~ 58 (112)
T 1l8d_A 47 KGKCPVCGRELT 58 (112)
T ss_dssp SEECTTTCCEEC
T ss_pred CCCCCCCCCcCC
Confidence 468999999875
No 94
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=76.96 E-value=0.77 Score=30.08 Aligned_cols=24 Identities=17% Similarity=0.411 Sum_probs=15.7
Q ss_pred cccCCccchhHHHHHhhcCCCCCCCCCccc
Q psy17995 24 NICGHPLCEGCVDLLFLKGTGNCYECNQPL 53 (120)
Q Consensus 24 ~~CGH~fC~~Ci~~~~~~~~~~CP~C~~~~ 53 (120)
..||+.|. +. + ..+..||.|+..-
T Consensus 71 ~~CG~~F~----~~-~-~kPsrCP~CkSe~ 94 (105)
T 2gmg_A 71 RKCGFVFK----AE-I-NIPSRCPKCKSEW 94 (105)
T ss_dssp TTTCCBCC----CC-S-SCCSSCSSSCCCC
T ss_pred hhCcCeec----cc-C-CCCCCCcCCCCCc
Confidence 37999991 11 1 1357899998743
No 95
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=76.57 E-value=0.46 Score=29.97 Aligned_cols=14 Identities=29% Similarity=0.760 Sum_probs=10.9
Q ss_pred CCCCCCCccccCCC
Q psy17995 44 GNCYECNQPLRRGN 57 (120)
Q Consensus 44 ~~CP~C~~~~~~~~ 57 (120)
..||+||+++.=..
T Consensus 9 ~~~PlCG~~L~W~e 22 (95)
T 2k5c_A 9 AKCPICGSPLKWEE 22 (95)
T ss_dssp EECSSSCCEECHHH
T ss_pred ccCCcCCCccCHHH
Confidence 57999999986433
No 96
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=76.45 E-value=1.7 Score=26.81 Aligned_cols=33 Identities=21% Similarity=0.553 Sum_probs=21.3
Q ss_pred ccCcccCCCcccCCCCcccccccCCccchhHHHH
Q psy17995 4 QECPRCKTTKYRKPTLKLMVNICGHPLCEGCVDL 37 (120)
Q Consensus 4 ~~CpiC~~~~~~~p~~~~~~~~CGH~fC~~Ci~~ 37 (120)
..|.+|.. .|.--..+-.-..||+.||..|...
T Consensus 22 ~~C~~C~~-~Fs~~~RrHHCR~CG~v~C~~Cs~~ 54 (84)
T 1z2q_A 22 PACNGCGC-VFTTTVRRHHCRNCGYVLCGDCSRH 54 (84)
T ss_dssp CBCTTTCC-BCCTTSCCEECTTTCCEECTGGGCC
T ss_pred CCCcCcCC-ccccchhcccccCCCcEEChHHhCC
Confidence 47999985 4432222212247999999999764
No 97
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=75.74 E-value=1.4 Score=32.05 Aligned_cols=35 Identities=31% Similarity=0.738 Sum_probs=22.4
Q ss_pred CCccCcccCCCcccCCCCcccccccCCccchhHHHH
Q psy17995 2 DDQECPRCKTTKYRKPTLKLMVNICGHPLCEGCVDL 37 (120)
Q Consensus 2 d~~~CpiC~~~~~~~p~~~~~~~~CGH~fC~~Ci~~ 37 (120)
+...|.+|.. .|.--..+..-..||+.||..|...
T Consensus 163 ~~~~C~~C~~-~F~~~~RrhHCR~CG~v~C~~Cs~~ 197 (226)
T 3zyq_A 163 DAEECHRCRV-QFGVMTRKHHCRACGQIFCGKCSSK 197 (226)
T ss_dssp CCSBCTTTCC-BCBTTBCCEECTTTCCEECTTTCCE
T ss_pred cCCCCcCcCC-CCCccccccccCCCcCEeChhhcCC
Confidence 3458999985 4442111222247999999999764
No 98
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=75.30 E-value=1.7 Score=27.24 Aligned_cols=34 Identities=21% Similarity=0.594 Sum_probs=21.4
Q ss_pred ccCcccCCCcccCCCCcccccccCCccchhHHHHH
Q psy17995 4 QECPRCKTTKYRKPTLKLMVNICGHPLCEGCVDLL 38 (120)
Q Consensus 4 ~~CpiC~~~~~~~p~~~~~~~~CGH~fC~~Ci~~~ 38 (120)
..|.+|.. .|.--..+..-..||+.||..|....
T Consensus 21 ~~C~~C~~-~F~~~~RrhhCr~CG~v~C~~Cs~~~ 54 (90)
T 3t7l_A 21 PNCMNCQV-KFTFTKRRHHCRACGKVFCGVCCNRK 54 (90)
T ss_dssp CBCTTTCC-BCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CcCcCCCC-cccchhhCccccCCCCEECCcccCCe
Confidence 36999985 44321112222479999999997653
No 99
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=75.24 E-value=1.3 Score=24.48 Aligned_cols=14 Identities=29% Similarity=0.849 Sum_probs=8.9
Q ss_pred ccCcccCC-CcccCC
Q psy17995 4 QECPRCKT-TKYRKP 17 (120)
Q Consensus 4 ~~CpiC~~-~~~~~p 17 (120)
+.||.|.. .+..++
T Consensus 6 ~~CP~C~~~~l~~d~ 20 (50)
T 1pft_A 6 KVCPACESAELIYDP 20 (50)
T ss_dssp CSCTTTSCCCEEEET
T ss_pred EeCcCCCCcceEEcC
Confidence 57999975 343444
No 100
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=74.99 E-value=1.3 Score=25.81 Aligned_cols=13 Identities=38% Similarity=1.022 Sum_probs=8.8
Q ss_pred ccCcccCCCcccC
Q psy17995 4 QECPRCKTTKYRK 16 (120)
Q Consensus 4 ~~CpiC~~~~~~~ 16 (120)
-.||.|+..+-++
T Consensus 7 k~CP~C~~~Iek~ 19 (60)
T 1wd2_A 7 KECPKCHVTIEKD 19 (60)
T ss_dssp CCCTTTCCCCSSC
T ss_pred eECcCCCCeeEeC
Confidence 3699999654443
No 101
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=74.76 E-value=1.7 Score=28.11 Aligned_cols=46 Identities=17% Similarity=0.374 Sum_probs=29.8
Q ss_pred ccCcccCCCcccCCCCcccccccCCccchhHHHHHhhcCCCCCCCCCccccCC
Q psy17995 4 QECPRCKTTKYRKPTLKLMVNICGHPLCEGCVDLLFLKGTGNCYECNQPLRRG 56 (120)
Q Consensus 4 ~~CpiC~~~~~~~p~~~~~~~~CGH~fC~~Ci~~~~~~~~~~CP~C~~~~~~~ 56 (120)
+.|..|.. .+... . +...=|..+|..|..+.+. +.|+.|++++...
T Consensus 31 F~C~~C~~-~L~~~--~-f~~~~g~~yC~~cy~~~~~---~~C~~C~~~I~~~ 76 (126)
T 2xqn_T 31 FCCFDCDS-ILAGE--I-YVMVNDKPVCKPCYVKNHA---VVCQGCHNAIDPE 76 (126)
T ss_dssp SBCTTTCC-BCTTS--E-EEEETTEEEEHHHHHHHSC---CBCTTTCSBCCTT
T ss_pred CCcCCCCC-CCCcC--E-EEeECCEEechHHhCcCcC---ccCcccCCcCCcC
Confidence 46777774 32221 1 2234578899999877653 6799999988753
No 102
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=74.59 E-value=1.8 Score=26.51 Aligned_cols=33 Identities=24% Similarity=0.683 Sum_probs=21.0
Q ss_pred ccCcccCCCcccCCCCcccccccCCccchhHHHH
Q psy17995 4 QECPRCKTTKYRKPTLKLMVNICGHPLCEGCVDL 37 (120)
Q Consensus 4 ~~CpiC~~~~~~~p~~~~~~~~CGH~fC~~Ci~~ 37 (120)
..|.+|.. .|.--..+..-..||+.||..|...
T Consensus 20 ~~C~~C~~-~Fs~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 20 THCRQCEK-EFSISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp CBCTTTCC-BCBTTBCCEECTTTCCEECSGGGCE
T ss_pred CcccCcCC-cccCccccccCCCCCCEEChHHhCC
Confidence 36999985 4432111111237999999999764
No 103
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=72.75 E-value=0.73 Score=35.93 Aligned_cols=50 Identities=18% Similarity=0.450 Sum_probs=0.0
Q ss_pred ccCcccCCCcccCCCCcccccccCCccchhHHHHHhhc------CCCCCCCCCcccc
Q psy17995 4 QECPRCKTTKYRKPTLKLMVNICGHPLCEGCVDLLFLK------GTGNCYECNQPLR 54 (120)
Q Consensus 4 ~~CpiC~~~~~~~p~~~~~~~~CGH~fC~~Ci~~~~~~------~~~~CP~C~~~~~ 54 (120)
..|+.|.. .|.--..+..-..||+.||..|....... ....|-.|-..+.
T Consensus 376 ~~c~~c~~-~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l~ 431 (434)
T 3mpx_A 376 MMCMNCGC-DFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGELK 431 (434)
T ss_dssp ---------------------------------------------------------
T ss_pred CcCCCcCC-CCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHHH
Confidence 46999985 44311111122479999999998654321 1234666655443
No 104
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=72.45 E-value=1.9 Score=29.79 Aligned_cols=31 Identities=19% Similarity=0.553 Sum_probs=20.0
Q ss_pred CccCcccCCCc--ccCCCCcccccccCCccchhHH
Q psy17995 3 DQECPRCKTTK--YRKPTLKLMVNICGHPLCEGCV 35 (120)
Q Consensus 3 ~~~CpiC~~~~--~~~p~~~~~~~~CGH~fC~~Ci 35 (120)
+-.|.+|...+ +.++ ..+-..|.|++|..|-
T Consensus 68 ~~~C~~C~~~fg~l~~~--g~~C~~C~~~VC~~C~ 100 (153)
T 2zet_C 68 ETHCARCLQPYRLLLNS--RRQCLECSLFVCKSCS 100 (153)
T ss_dssp GTBCTTTCCBGGGCSSC--CEECTTTCCEECGGGE
T ss_pred CccchhhcCccccccCC--CCcCCCCCchhhcccc
Confidence 45799999642 1222 2123489999999995
No 105
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=72.12 E-value=2.2 Score=26.22 Aligned_cols=33 Identities=18% Similarity=0.660 Sum_probs=20.9
Q ss_pred ccCcccCCCcccCCCCcccccccCCccchhHHHH
Q psy17995 4 QECPRCKTTKYRKPTLKLMVNICGHPLCEGCVDL 37 (120)
Q Consensus 4 ~~CpiC~~~~~~~p~~~~~~~~CGH~fC~~Ci~~ 37 (120)
..|.+|.. .|.--..+-.-..||++||..|...
T Consensus 15 ~~C~~C~~-~F~~~~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 15 GNCTGCSA-TFSVLKKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp SSCSSSCC-CCCSSSCCEECSSSCCEECTTTSCE
T ss_pred CcCcCcCC-ccccchhhhhhcCCCcEEChhhcCC
Confidence 36999985 4532222212247999999999654
No 106
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=71.12 E-value=1.7 Score=28.89 Aligned_cols=46 Identities=20% Similarity=0.500 Sum_probs=25.9
Q ss_pred ccCcccCCCcccCCCCcccccccCCccchhHHHHHhhcCCCCCCCCCc
Q psy17995 4 QECPRCKTTKYRKPTLKLMVNICGHPLCEGCVDLLFLKGTGNCYECNQ 51 (120)
Q Consensus 4 ~~CpiC~~~~~~~p~~~~~~~~CGH~fC~~Ci~~~~~~~~~~CP~C~~ 51 (120)
..|..|.. .|.--..+-.-..||..||..|...... ....|-.|-.
T Consensus 20 ~~C~~C~~-~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~-~vRVC~~C~~ 65 (120)
T 1y02_A 20 PSCKSCGA-HFANTARKQTCLDCKKNFCMTCSSQVGN-GPRLCLLCQR 65 (120)
T ss_dssp CCCTTTCC-CCSSGGGCEECTTTCCEECGGGEEC-----CCEEHHHHH
T ss_pred CcccCcCC-ccccccccccCCCCCCeeCHHHhCCCCC-CceECHHHHH
Confidence 36889985 4542222222247999999999654322 1345666644
No 107
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=70.29 E-value=3 Score=27.03 Aligned_cols=49 Identities=24% Similarity=0.470 Sum_probs=31.4
Q ss_pred ccCcccCCCcccCCCCcccccccCCccchhHHHHHhhcCCCCCCCCCccccC
Q psy17995 4 QECPRCKTTKYRKPTLKLMVNICGHPLCEGCVDLLFLKGTGNCYECNQPLRR 55 (120)
Q Consensus 4 ~~CpiC~~~~~~~p~~~~~~~~CGH~fC~~Ci~~~~~~~~~~CP~C~~~~~~ 55 (120)
+.|..|.. .+......+ ...=|..+|..|..+.+.. ...|+.|++++..
T Consensus 30 F~C~~C~~-~L~~~~~~~-~~~~g~~yC~~~y~~~~~~-~~~C~~C~~~I~~ 78 (131)
T 2xjy_A 30 LSCDLCGC-RLGEVGRRL-YYKLGRKLCRRDYLRLFGQ-DGLCASCDKRIRA 78 (131)
T ss_dssp CBCTTTCC-BCSSTTCCE-EEETTEEECHHHHHHHHCC-CEECTTTCCEECT
T ss_pred cccCcCCC-ccccCCCeE-EEECCEEeecCchhhhCCC-ccChhhcCCccCc
Confidence 57888875 332111222 2345888999999887653 1379999998864
No 108
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=70.27 E-value=0.99 Score=26.01 Aligned_cols=14 Identities=29% Similarity=0.591 Sum_probs=11.4
Q ss_pred CCCccCcccCCCccc
Q psy17995 1 MDDQECPRCKTTKYR 15 (120)
Q Consensus 1 ~d~~~CpiC~~~~~~ 15 (120)
|..+.|++|. .+|.
T Consensus 1 m~~y~C~~CG-yvYd 14 (55)
T 2v3b_B 1 MRKWQCVVCG-FIYD 14 (55)
T ss_dssp CCEEEETTTC-CEEE
T ss_pred CCcEEeCCCC-eEEC
Confidence 7889999999 4763
No 109
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=69.70 E-value=2.1 Score=26.69 Aligned_cols=33 Identities=24% Similarity=0.715 Sum_probs=21.1
Q ss_pred ccCcccCCCcccCCCCcccccccCCccchhHHHH
Q psy17995 4 QECPRCKTTKYRKPTLKLMVNICGHPLCEGCVDL 37 (120)
Q Consensus 4 ~~CpiC~~~~~~~p~~~~~~~~CGH~fC~~Ci~~ 37 (120)
..|.+|.. .|.--..+-.-..||+.||..|...
T Consensus 10 ~~C~~C~~-~F~~~~RrHHCR~CG~vfC~~Cs~~ 42 (88)
T 1wfk_A 10 SRCYGCAV-KFTLFKKEYGCKNCGRAFCNGCLSF 42 (88)
T ss_dssp SBCTTTCC-BCCSSSCEEECSSSCCEEETTTSCE
T ss_pred CCCcCcCC-cccCccccccCCCCCCEEChhHcCC
Confidence 47999995 4432211211247999999999764
No 110
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=69.67 E-value=2.1 Score=26.50 Aligned_cols=46 Identities=20% Similarity=0.450 Sum_probs=28.9
Q ss_pred ccCcccCCCcccCCCCcccccccCCccchhHHHHHhhcCCCCCCCCCccccCC
Q psy17995 4 QECPRCKTTKYRKPTLKLMVNICGHPLCEGCVDLLFLKGTGNCYECNQPLRRG 56 (120)
Q Consensus 4 ~~CpiC~~~~~~~p~~~~~~~~CGH~fC~~Ci~~~~~~~~~~CP~C~~~~~~~ 56 (120)
+.|..|.. .+.+. . +...=|..+|..|..+.+ .+.|..|++++...
T Consensus 34 F~C~~C~~-~L~~~--~-~~~~~g~~yC~~cy~~~~---~~~C~~C~~~I~~~ 79 (101)
T 2cup_A 34 FRCAKCLH-PLANE--T-FVAKDNKILCNKCTTRED---SPKCKGCFKAIVAG 79 (101)
T ss_dssp CCCSSSCC-CTTSS--C-CEEETTEEECHHHHTTCC---CCBCSSSCCBCCSS
T ss_pred CcccccCC-CCCcC--e-eECcCCEEEChhHhhhhc---CCccccCCCccccC
Confidence 46777774 32221 1 123447888999876543 36899999988743
No 111
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=69.09 E-value=2 Score=29.00 Aligned_cols=32 Identities=16% Similarity=0.416 Sum_probs=19.2
Q ss_pred CccCcccCCCc-ccCCCCcccccccCCccchhHH
Q psy17995 3 DQECPRCKTTK-YRKPTLKLMVNICGHPLCEGCV 35 (120)
Q Consensus 3 ~~~CpiC~~~~-~~~p~~~~~~~~CGH~fC~~Ci 35 (120)
.-.|.+|.... |... ...+-..|.|++|..|-
T Consensus 55 ~~~C~~C~~~~g~l~~-~g~~C~~C~~~VC~~C~ 87 (134)
T 1zbd_B 55 VNRCILCGEQLGMLGS-ASVVCEDCKKNVCTKCG 87 (134)
T ss_dssp SSBCSSSCCBCSTTSC-CEEECTTTCCEEETTSE
T ss_pred CccccccCCCcccccC-CCCCCCCCCcccccccC
Confidence 45799999654 2222 11112378888888884
No 112
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=68.26 E-value=4.8 Score=27.07 Aligned_cols=41 Identities=22% Similarity=0.662 Sum_probs=28.4
Q ss_pred cCcccCCCcccCCCCcccc-cccCCccchhHHHHHh----------hcCCCCCCCCCc
Q psy17995 5 ECPRCKTTKYRKPTLKLMV-NICGHPLCEGCVDLLF----------LKGTGNCYECNQ 51 (120)
Q Consensus 5 ~CpiC~~~~~~~p~~~~~~-~~CGH~fC~~Ci~~~~----------~~~~~~CP~C~~ 51 (120)
.|.+|.+. -.++. ..|...||..||.+.+ ..++..|+.|.-
T Consensus 59 ~C~vC~dG------G~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 59 QCRWCAEG------GNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp SCTTTCCC------SEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred cCeecCCC------CeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 48888842 11222 3799999999999763 234588999965
No 113
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=64.74 E-value=10 Score=22.14 Aligned_cols=31 Identities=10% Similarity=0.027 Sum_probs=18.3
Q ss_pred CCCCCCCccccCCCCccccccchhHHHHHHH
Q psy17995 44 GNCYECNQPLRRGNFRVQLFDDSSVEKEVEI 74 (120)
Q Consensus 44 ~~CP~C~~~~~~~~~~~~~f~d~~~~~e~~~ 74 (120)
..||.||++........-.-+|..-+--+.+
T Consensus 19 ~~CP~CG~~T~~~hParfSp~Dky~~yR~~~ 49 (60)
T 2apo_B 19 EICPKCGEKTVIPKPPKFSLEDRWGKYRRML 49 (60)
T ss_dssp SBCSSSCSBCBCCCCCCCCTTCTTHHHHHHH
T ss_pred ccCcCCCCcCCCCCCCCCCCCcchHHHHHHH
Confidence 5799999988765533333355544433443
No 114
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=64.14 E-value=2.5 Score=25.26 Aligned_cols=12 Identities=25% Similarity=0.470 Sum_probs=8.8
Q ss_pred CCccCcccCCCc
Q psy17995 2 DDQECPRCKTTK 13 (120)
Q Consensus 2 d~~~CpiC~~~~ 13 (120)
+-+.||+|+..+
T Consensus 9 eiL~CP~ck~~L 20 (67)
T 2jny_A 9 EVLACPKDKGPL 20 (67)
T ss_dssp CCCBCTTTCCBC
T ss_pred HHhCCCCCCCcC
Confidence 457899999643
No 115
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=63.75 E-value=1.8 Score=26.19 Aligned_cols=14 Identities=29% Similarity=0.608 Sum_probs=10.8
Q ss_pred CCCccCcccCCCccc
Q psy17995 1 MDDQECPRCKTTKYR 15 (120)
Q Consensus 1 ~d~~~CpiC~~~~~~ 15 (120)
|..+.|++|. .+|.
T Consensus 5 m~~y~C~vCG-yiYd 18 (70)
T 1dx8_A 5 EGKYECEACG-YIYE 18 (70)
T ss_dssp SSCEEETTTC-CEEC
T ss_pred CceEEeCCCC-EEEc
Confidence 6788999999 4653
No 116
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=63.15 E-value=2.8 Score=25.14 Aligned_cols=11 Identities=36% Similarity=0.483 Sum_probs=8.3
Q ss_pred CCccCcccCCC
Q psy17995 2 DDQECPRCKTT 12 (120)
Q Consensus 2 d~~~CpiC~~~ 12 (120)
+-+.||+|+..
T Consensus 7 ~iL~CP~ck~~ 17 (68)
T 2jr6_A 7 DILVCPVTKGR 17 (68)
T ss_dssp CCCBCSSSCCB
T ss_pred hheECCCCCCc
Confidence 45789999963
No 117
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=62.45 E-value=5 Score=25.87 Aligned_cols=51 Identities=18% Similarity=0.234 Sum_probs=32.0
Q ss_pred ccCcccCCCcccCCCCcccccccCCccchhHHHHHhhcCCCCCCCCCccccCCC
Q psy17995 4 QECPRCKTTKYRKPTLKLMVNICGHPLCEGCVDLLFLKGTGNCYECNQPLRRGN 57 (120)
Q Consensus 4 ~~CpiC~~~~~~~p~~~~~~~~CGH~fC~~Ci~~~~~~~~~~CP~C~~~~~~~~ 57 (120)
+.|..|.. .+.+.... +...=|..+|..|..+.+.. ...|..|+.++....
T Consensus 33 F~C~~C~~-~L~~~~~~-~~~~~g~~yC~~cy~~~f~~-~~~C~~C~~~I~~~~ 83 (122)
T 1m3v_A 33 LKCSSCQA-QLGDIGTS-SYTKSGMILCRNDYIRLFGN-SGAGGSGGHMGSGGD 83 (122)
T ss_dssp HCCSSSCC-CTTTSEEC-CEEETTEEECHHHHHHHHCC-CCSSSCSSCCSCCEE
T ss_pred CCcCCCCC-cccccCCe-EEEECCeeecHHHHHHHcCC-CCccccCCCCcCchh
Confidence 46777774 33211111 22345788999999887753 237999999887543
No 118
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=62.28 E-value=2.8 Score=25.16 Aligned_cols=12 Identities=42% Similarity=0.767 Sum_probs=8.5
Q ss_pred CCccCcccCCCc
Q psy17995 2 DDQECPRCKTTK 13 (120)
Q Consensus 2 d~~~CpiC~~~~ 13 (120)
+-+.||+|+..+
T Consensus 7 eiL~CP~ck~~L 18 (69)
T 2pk7_A 7 DILACPICKGPL 18 (69)
T ss_dssp GTCCCTTTCCCC
T ss_pred hheeCCCCCCcC
Confidence 346899999643
No 119
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=60.62 E-value=9.9 Score=25.77 Aligned_cols=44 Identities=14% Similarity=0.302 Sum_probs=26.9
Q ss_pred ccCcccCCCcccCCCCcccccccCCccchhHHHHHhhcCCCCCCCCCccccC
Q psy17995 4 QECPRCKTTKYRKPTLKLMVNICGHPLCEGCVDLLFLKGTGNCYECNQPLRR 55 (120)
Q Consensus 4 ~~CpiC~~~~~~~p~~~~~~~~CGH~fC~~Ci~~~~~~~~~~CP~C~~~~~~ 55 (120)
+.|..|.. .+.... + ..=|..+|..|..+.+. ..|..|+.++..
T Consensus 34 F~C~~C~~-~L~~~~---f-~~~g~~yC~~~y~~~f~---~~C~~C~~~I~~ 77 (169)
T 2rgt_A 34 LKCSDCHV-PLAERC---F-SRGESVYCKDDFFKRFG---TKCAACQLGIPP 77 (169)
T ss_dssp SBCTTTCC-BCCSCC---E-ESSSCEECHHHHHHHHS---CBCTTTCCBCCT
T ss_pred CccCCCCC-cCCCCC---c-ccCCeeeeccccccccc---ccccccccccCC
Confidence 46777774 322211 1 23478899999887664 457777776643
No 120
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=59.62 E-value=3.2 Score=25.01 Aligned_cols=11 Identities=45% Similarity=0.845 Sum_probs=8.3
Q ss_pred CCccCcccCCC
Q psy17995 2 DDQECPRCKTT 12 (120)
Q Consensus 2 d~~~CpiC~~~ 12 (120)
+-+.||+|+..
T Consensus 7 ~iL~CP~ck~~ 17 (70)
T 2js4_A 7 DILVCPVCKGR 17 (70)
T ss_dssp CCCBCTTTCCB
T ss_pred hheECCCCCCc
Confidence 45689999963
No 121
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=58.88 E-value=2.3 Score=29.11 Aligned_cols=24 Identities=21% Similarity=0.517 Sum_probs=16.0
Q ss_pred ccCCccchhHHHHHhhcCCCCCCCCCccccC
Q psy17995 25 ICGHPLCEGCVDLLFLKGTGNCYECNQPLRR 55 (120)
Q Consensus 25 ~CGH~fC~~Ci~~~~~~~~~~CP~C~~~~~~ 55 (120)
.|||.|=.. .....||.||.++++
T Consensus 137 ~Cg~~~~~~-------~~~~~Cp~CG~~~~~ 160 (165)
T 2lcq_A 137 GCGRKFSTL-------PPGGVCPDCGSKVKL 160 (165)
T ss_dssp SSCCEESSC-------CGGGBCTTTCCBEEE
T ss_pred CCCCcccCC-------CCCCcCCCCCCccee
Confidence 799988211 112479999998754
No 122
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=57.72 E-value=11 Score=22.13 Aligned_cols=45 Identities=13% Similarity=0.276 Sum_probs=31.2
Q ss_pred CccCcccCCCcccCCCCcccc-cccCCccchhHHHHHhhc---CCCCCCCCCccc
Q psy17995 3 DQECPRCKTTKYRKPTLKLMV-NICGHPLCEGCVDLLFLK---GTGNCYECNQPL 53 (120)
Q Consensus 3 ~~~CpiC~~~~~~~p~~~~~~-~~CGH~fC~~Ci~~~~~~---~~~~CP~C~~~~ 53 (120)
...|.+|... . .++. ..|...|-..|+...+.. +...||.|....
T Consensus 12 ~~~C~vC~~~---~---~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 12 GARCGVCGDG---T---DVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp TCCCTTTSCC---T---TCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred CCCcCCCCCC---C---eEEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 3479999842 1 1233 389999999999866553 346899997643
No 123
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=56.36 E-value=8 Score=22.49 Aligned_cols=43 Identities=16% Similarity=0.408 Sum_probs=24.6
Q ss_pred ccCcccCCCcccCCCCcccccccCCccch-hHHHHHhhcCCCCCCCCCccc
Q psy17995 4 QECPRCKTTKYRKPTLKLMVNICGHPLCE-GCVDLLFLKGTGNCYECNQPL 53 (120)
Q Consensus 4 ~~CpiC~~~~~~~p~~~~~~~~CGH~fC~-~Ci~~~~~~~~~~CP~C~~~~ 53 (120)
+.|..|.. .+... . +...=|..+|. .|..+.+. +.|..|+..+
T Consensus 28 F~C~~C~~-~L~~~--~-~~~~~g~~yC~~~cy~~~f~---~~C~~C~~~~ 71 (76)
T 1iml_A 28 LKCEKCGK-TLTSG--G-HAEHEGKPYCNHPCYSAMFG---PKGFGRGGAE 71 (76)
T ss_dssp CBCTTTCC-BCCTT--T-EEEETTEEEETTTHHHHHSS---CCCSSCCCSS
T ss_pred CCccccCc-cCCCC--c-eECcCCeEeeCHHHHHHHhC---ccCCCcCCce
Confidence 46777774 32221 1 12234777888 58776553 4677787544
No 124
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=55.87 E-value=6.9 Score=16.99 Aligned_cols=13 Identities=15% Similarity=0.680 Sum_probs=9.8
Q ss_pred CCCCCCCCccccC
Q psy17995 43 TGNCYECNQPLRR 55 (120)
Q Consensus 43 ~~~CP~C~~~~~~ 55 (120)
+..|+.|++.+..
T Consensus 2 ~~~C~~C~~~f~~ 14 (29)
T 2m0e_A 2 EHKCPHCDKKFNQ 14 (29)
T ss_dssp CCCCSSCCCCCCT
T ss_pred CCcCCCCCcccCC
Confidence 3579999988764
No 125
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=55.38 E-value=11 Score=25.91 Aligned_cols=45 Identities=13% Similarity=0.287 Sum_probs=28.2
Q ss_pred ccCcccCCCcccCCCCcccccccCCccchhHHHHHhhcCCCCCCCCCccccCC
Q psy17995 4 QECPRCKTTKYRKPTLKLMVNICGHPLCEGCVDLLFLKGTGNCYECNQPLRRG 56 (120)
Q Consensus 4 ~~CpiC~~~~~~~p~~~~~~~~CGH~fC~~Ci~~~~~~~~~~CP~C~~~~~~~ 56 (120)
+.|..|.. .+.... + ..=|..+|..|..+.+. +.|..|+.++...
T Consensus 88 F~C~~C~~-~L~~~~---f-~~~g~~yC~~~y~~~f~---~kC~~C~~~I~~~ 132 (182)
T 2jtn_A 88 LKCSDCHV-PLAERC---F-SRGESVYCKDDFFKRFG---TKCAACQLGIPPT 132 (182)
T ss_dssp TSCTTTCC-CCSSCC---E-EETTEEECHHHHHHTTS---CCCTTTCCCCCSS
T ss_pred CccCCCCC-ccCCCc---e-eECCEeeecCccccccc---cccccCCCccCCC
Confidence 46777774 322211 1 23477889999877653 5788898877643
No 126
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=55.36 E-value=8.6 Score=26.67 Aligned_cols=34 Identities=15% Similarity=0.296 Sum_probs=21.4
Q ss_pred ccCcccCCCcccCCCCcccccccCCccchhHHHHHhhc
Q psy17995 4 QECPRCKTTKYRKPTLKLMVNICGHPLCEGCVDLLFLK 41 (120)
Q Consensus 4 ~~CpiC~~~~~~~p~~~~~~~~CGH~fC~~Ci~~~~~~ 41 (120)
+.|..|.. .+.+. . +...=|..+|..|..+.+..
T Consensus 35 F~C~~C~~-~L~~~--~-~~~~~g~~yC~~cy~~~f~~ 68 (192)
T 1b8t_A 35 FLCMVCKK-NLDST--T-VAVHGDEIYCKSCYGKKYGP 68 (192)
T ss_dssp CBCTTTCC-BCCSS--S-EEEETTEEEEHHHHHHHHSC
T ss_pred CcCcccCC-cCCCC--e-eEecCCEeeChhhhHhhcCc
Confidence 56777874 33222 1 22234788999999988753
No 127
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=54.77 E-value=10 Score=22.37 Aligned_cols=23 Identities=26% Similarity=0.432 Sum_probs=13.8
Q ss_pred ccCCccchhHHHHHhhcCCCCCCCCCccc
Q psy17995 25 ICGHPLCEGCVDLLFLKGTGNCYECNQPL 53 (120)
Q Consensus 25 ~CGH~fC~~Ci~~~~~~~~~~CP~C~~~~ 53 (120)
.||+.+--. ...+..||.|+--+
T Consensus 26 ~Cg~~~~l~------~~~~iRC~~CG~RI 48 (63)
T 3h0g_L 26 DCGARNTIQ------AKEVIRCRECGHRV 48 (63)
T ss_dssp SSCCBCCCC------SSSCCCCSSSCCCC
T ss_pred CCCCeeecC------CCCceECCCCCcEE
Confidence 677766311 22457899997754
No 128
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=54.27 E-value=2.1 Score=26.71 Aligned_cols=14 Identities=21% Similarity=0.510 Sum_probs=9.6
Q ss_pred CCCccCcccCCCccc
Q psy17995 1 MDDQECPRCKTTKYR 15 (120)
Q Consensus 1 ~d~~~CpiC~~~~~~ 15 (120)
|..+.|++|. .+|.
T Consensus 25 m~~y~C~vCG-yvYD 38 (81)
T 2kn9_A 25 YKLFRCIQCG-FEYD 38 (81)
T ss_dssp CCEEEETTTC-CEEE
T ss_pred cceEEeCCCC-EEEc
Confidence 4567888888 4653
No 129
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=52.11 E-value=2.8 Score=26.13 Aligned_cols=19 Identities=16% Similarity=0.522 Sum_probs=11.5
Q ss_pred CCCCCCCccccCCCCcccc
Q psy17995 44 GNCYECNQPLRRGNFRVQL 62 (120)
Q Consensus 44 ~~CP~C~~~~~~~~~~~~~ 62 (120)
..|+.|+..+.-..+.+++
T Consensus 46 W~C~~Cg~~~aggay~~~t 64 (83)
T 1vq8_Z 46 WQCSYCDYKFTGGSYKPET 64 (83)
T ss_dssp EEETTTCCEEECCSSSSSC
T ss_pred EECCCCCCEecCCEecccc
Confidence 5677777766555455444
No 130
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=51.77 E-value=6.3 Score=22.55 Aligned_cols=11 Identities=27% Similarity=0.866 Sum_probs=8.1
Q ss_pred CCccCcccCCC
Q psy17995 2 DDQECPRCKTT 12 (120)
Q Consensus 2 d~~~CpiC~~~ 12 (120)
+-+.||+|+..
T Consensus 9 ~iL~CP~c~~~ 19 (56)
T 2kpi_A 9 EILACPACHAP 19 (56)
T ss_dssp TSCCCSSSCSC
T ss_pred hheeCCCCCCc
Confidence 44689999964
No 131
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=51.55 E-value=7.2 Score=17.05 Aligned_cols=13 Identities=23% Similarity=0.536 Sum_probs=9.7
Q ss_pred CCCCCCCCccccC
Q psy17995 43 TGNCYECNQPLRR 55 (120)
Q Consensus 43 ~~~CP~C~~~~~~ 55 (120)
+..|+.|++.+..
T Consensus 2 ~~~C~~C~~~f~~ 14 (29)
T 1ard_A 2 SFVCEVCTRAFAR 14 (29)
T ss_dssp CCBCTTTCCBCSS
T ss_pred CeECCCCCcccCC
Confidence 3579999987753
No 132
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=51.53 E-value=2.8 Score=25.12 Aligned_cols=21 Identities=5% Similarity=-0.135 Sum_probs=11.8
Q ss_pred CCCCCCCCccccCCCCccccc
Q psy17995 43 TGNCYECNQPLRRGNFRVQLF 63 (120)
Q Consensus 43 ~~~CP~C~~~~~~~~~~~~~f 63 (120)
...||.|+..+.-.+-.+...
T Consensus 26 ~LiC~~cg~~YPI~dGIPvmL 46 (68)
T 2hf1_A 26 ELICKGDRLAFPIKDGIPMML 46 (68)
T ss_dssp EEEETTTTEEEEEETTEECCC
T ss_pred EEEcCCCCcEecCCCCeeeeC
Confidence 356777877665444334433
No 133
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=51.17 E-value=12 Score=20.25 Aligned_cols=44 Identities=20% Similarity=0.576 Sum_probs=28.6
Q ss_pred cCcccCCCcccCCCCcccc-cccCCccchhHHHHHhhc---CCCCCCCCCc
Q psy17995 5 ECPRCKTTKYRKPTLKLMV-NICGHPLCEGCVDLLFLK---GTGNCYECNQ 51 (120)
Q Consensus 5 ~CpiC~~~~~~~p~~~~~~-~~CGH~fC~~Ci~~~~~~---~~~~CP~C~~ 51 (120)
.|.+|... .+++ .|+. ..|...|-..|+..-+.. +...||.|..
T Consensus 2 ~C~vC~~~--~~~~-~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKK--GEDD-KLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCS--SCCS-CCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCC--CCCC-CEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 58899852 2222 2333 379999999999754443 3467999965
No 134
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=49.23 E-value=8 Score=16.65 Aligned_cols=12 Identities=17% Similarity=0.451 Sum_probs=9.0
Q ss_pred CCCCCCCccccC
Q psy17995 44 GNCYECNQPLRR 55 (120)
Q Consensus 44 ~~CP~C~~~~~~ 55 (120)
..|+.|++.+..
T Consensus 2 ~~C~~C~k~f~~ 13 (27)
T 1znf_A 2 YKCGLCERSFVE 13 (27)
T ss_dssp CBCSSSCCBCSS
T ss_pred ccCCCCCCcCCC
Confidence 468999887753
No 135
>2ds5_A CLPX, ATP-dependent CLP protease ATP-binding subunit CLPX; treble cleft zinc finger, metal binding protein, protein binding; HET: PG4; 1.50A {Escherichia coli} SCOP: g.39.1.11 PDB: 2ds6_A 2ds8_A 2ds7_A
Probab=49.08 E-value=22 Score=19.90 Aligned_cols=34 Identities=26% Similarity=0.490 Sum_probs=21.0
Q ss_pred CccCcccCCCcccCCCCcccccccCCccchhHHHHHh
Q psy17995 3 DQECPRCKTTKYRKPTLKLMVNICGHPLCEGCVDLLF 39 (120)
Q Consensus 3 ~~~CpiC~~~~~~~p~~~~~~~~CGH~fC~~Ci~~~~ 39 (120)
.+.|+-|... .+...+|+..+ |=.+|..|+....
T Consensus 11 ~~~CSFCGk~--~~ev~~LIaGp-gv~IC~eCi~~~~ 44 (51)
T 2ds5_A 11 LLYCSFCGKS--QHEVRKLIAGP-SVYICDECVDLCN 44 (51)
T ss_dssp CCBCTTTCCB--TTTSSCEEECS-SCEEEHHHHHHHH
T ss_pred CcEecCCCCC--HHHhcccCCCC-CCEehHHHHHHHH
Confidence 4689999852 22222333335 6569999998753
No 136
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=54.25 E-value=3.7 Score=17.91 Aligned_cols=12 Identities=17% Similarity=0.473 Sum_probs=9.2
Q ss_pred CCCCCCCccccC
Q psy17995 44 GNCYECNQPLRR 55 (120)
Q Consensus 44 ~~CP~C~~~~~~ 55 (120)
..|+.|++.+..
T Consensus 3 ~~C~~C~k~f~~ 14 (26)
T 2lvu_A 3 YVCERCGKRFVQ 14 (26)
Confidence 568899887764
No 137
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=48.38 E-value=7.5 Score=25.21 Aligned_cols=22 Identities=18% Similarity=0.249 Sum_probs=15.0
Q ss_pred ccCCccchhHHHHHhhcCCC-CCCCCCccc
Q psy17995 25 ICGHPLCEGCVDLLFLKGTG-NCYECNQPL 53 (120)
Q Consensus 25 ~CGH~fC~~Ci~~~~~~~~~-~CP~C~~~~ 53 (120)
.|||.|=. ..... .||.|+.+.
T Consensus 78 ~CG~~~e~-------~~~~~~~CP~Cgs~~ 100 (119)
T 2kdx_A 78 DCSHVFKP-------NALDYGVCEKCHSKN 100 (119)
T ss_dssp SSSCEECS-------CCSTTCCCSSSSSCC
T ss_pred CCCCEEeC-------CCCCCCcCccccCCC
Confidence 68888732 12346 899999864
No 138
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=48.35 E-value=10 Score=16.53 Aligned_cols=13 Identities=23% Similarity=0.314 Sum_probs=9.8
Q ss_pred CCCCCCCCccccC
Q psy17995 43 TGNCYECNQPLRR 55 (120)
Q Consensus 43 ~~~CP~C~~~~~~ 55 (120)
+..|+.|+..+..
T Consensus 2 ~~~C~~C~k~f~~ 14 (30)
T 1klr_A 2 TYQCQYCEFRSAD 14 (30)
T ss_dssp CCCCSSSSCCCSC
T ss_pred CccCCCCCCccCC
Confidence 3579999988764
No 139
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=48.27 E-value=2.4 Score=24.61 Aligned_cols=50 Identities=16% Similarity=0.415 Sum_probs=31.2
Q ss_pred CCccCcccCCCcccCCCCcccc-cccCCccchhHHHHHh------hcCCCCCCCCCcc
Q psy17995 2 DDQECPRCKTTKYRKPTLKLMV-NICGHPLCEGCVDLLF------LKGTGNCYECNQP 52 (120)
Q Consensus 2 d~~~CpiC~~~~~~~p~~~~~~-~~CGH~fC~~Ci~~~~------~~~~~~CP~C~~~ 52 (120)
++..|.+|...--.+.+ .|+. ..|+..|-..|+...+ ..+...||.|...
T Consensus 5 ~~~~C~vC~~~~~~~~~-~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~ 61 (66)
T 2yt5_A 5 SSGVCTICQEEYSEAPN-EMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFA 61 (66)
T ss_dssp CCCCBSSSCCCCCBTTB-CEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHT
T ss_pred CCCCCCCCCCCCCCCCC-CEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCc
Confidence 35689999952112222 2333 4899888889987643 2245789988653
No 140
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=47.86 E-value=6.5 Score=27.27 Aligned_cols=49 Identities=22% Similarity=0.448 Sum_probs=28.1
Q ss_pred ccCcccCCCcccCCCCcccccccCCccchhHHHHHhhcCCCCCCCCCccccC
Q psy17995 4 QECPRCKTTKYRKPTLKLMVNICGHPLCEGCVDLLFLKGTGNCYECNQPLRR 55 (120)
Q Consensus 4 ~~CpiC~~~~~~~p~~~~~~~~CGH~fC~~Ci~~~~~~~~~~CP~C~~~~~~ 55 (120)
+.|..|.. .+.+.... +...=|..+|..|..+.+... ..|+.|++++..
T Consensus 33 F~C~~C~~-~L~~~g~~-~~~~~g~~yC~~cy~~~~~~~-~~C~~C~~~I~~ 81 (188)
T 1rut_X 33 LKCSSCQA-QLGDIGTS-SYTKSGMILCRNDYIRLFGNS-GACSACGQSIPA 81 (188)
T ss_dssp CBCTTTCC-BHHHHCSE-EEEETTEEECHHHHHHHHSCC-EECTTTCCEECT
T ss_pred cccCCCCc-ccccCCce-EEEeCCccccccccccccccC-CccccCCCcccc
Confidence 45666764 32210011 122347788999988766421 268888887754
No 141
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=47.70 E-value=12 Score=21.74 Aligned_cols=42 Identities=29% Similarity=0.642 Sum_probs=24.7
Q ss_pred ccCcccCCCcccCCCCcccccccCCccchhHHHHHhhcCCCCCCCCCccccCCCC
Q psy17995 4 QECPRCKTTKYRKPTLKLMVNICGHPLCEGCVDLLFLKGTGNCYECNQPLRRGNF 58 (120)
Q Consensus 4 ~~CpiC~~~~~~~p~~~~~~~~CGH~fC~~Ci~~~~~~~~~~CP~C~~~~~~~~~ 58 (120)
..|+.|...++... .+..-|..+-..| ..|..|+.+|....|
T Consensus 10 ~~C~~C~~~I~~~~----~v~a~~~~~H~~C---------F~C~~C~~~L~~~~~ 51 (76)
T 2cu8_A 10 SKCPKCDKTVYFAE----KVSSLGKDWHKFC---------LKCERCSKTLTPGGH 51 (76)
T ss_dssp CBCTTTCCBCCTTT----EEEETTEEEETTT---------CBCSSSCCBCCTTSC
T ss_pred CCCcCCCCEeECCe----EEEECCeEeeCCC---------CCCCCCCCccCCCce
Confidence 36889986554232 1333344443344 678899998875443
No 142
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=47.64 E-value=9.6 Score=16.80 Aligned_cols=13 Identities=31% Similarity=0.631 Sum_probs=9.8
Q ss_pred CCCCCCCCccccC
Q psy17995 43 TGNCYECNQPLRR 55 (120)
Q Consensus 43 ~~~CP~C~~~~~~ 55 (120)
+..|+.|+..+..
T Consensus 2 ~~~C~~C~k~f~~ 14 (30)
T 1paa_A 2 AYACGLCNRAFTR 14 (30)
T ss_dssp CSBCTTTCCBCSS
T ss_pred CcCCcccCcccCC
Confidence 3579999988754
No 143
>3gox_A Restriction endonuclease HPY99I; endonuclease-DNA complex, restriction enzyme, HPY99I, pseudopalindrome; HET: 1PE; 1.50A {Helicobacter pylori} PDB: 3fc3_A*
Probab=47.33 E-value=10 Score=27.37 Aligned_cols=47 Identities=21% Similarity=0.359 Sum_probs=29.1
Q ss_pred cCcccCCCcccCCCCcccc---cccC----CccchhHHHHH-------------hhcCC-----CCCCCCCcccc
Q psy17995 5 ECPRCKTTKYRKPTLKLMV---NICG----HPLCEGCVDLL-------------FLKGT-----GNCYECNQPLR 54 (120)
Q Consensus 5 ~CpiC~~~~~~~p~~~~~~---~~CG----H~fC~~Ci~~~-------------~~~~~-----~~CP~C~~~~~ 54 (120)
.|+.|.. ..|...+.. .+=| +..|.+|-..+ +.... ..||+|+.+..
T Consensus 77 ~C~~Cg~---~Kp~seF~rnkt~~DG~~~l~s~CkeC~~~lr~YGIT~eey~~L~e~Qg~~~~~G~C~ICg~~~~ 148 (200)
T 3gox_A 77 ICNICHI---LKNTDGFEINQTDAKGRKTTRPSCRECRKNIDGVKLSSTEKKKMDEIAPPKGSVFTCPICEKRSI 148 (200)
T ss_dssp ECTTTCB---EEEGGGSCEEEECTTSCEEECSSCHHHHHHHHCSCCCHHHHHHHHTTCCCTTCEEECTTTCCEEE
T ss_pred ECCCCCC---CcchhhhcccccCCCCCcccCccChhhhhccCCcCCCHHHHHHHHHHcccCCCCCcCcCCCCCCC
Confidence 6999985 233222222 2356 88999996532 22223 57999999775
No 144
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=45.34 E-value=7.8 Score=26.95 Aligned_cols=21 Identities=29% Similarity=0.624 Sum_probs=15.0
Q ss_pred cccCCccchhHHHHHhhcCCCCCCCCCcc
Q psy17995 24 NICGHPLCEGCVDLLFLKGTGNCYECNQP 52 (120)
Q Consensus 24 ~~CGH~fC~~Ci~~~~~~~~~~CP~C~~~ 52 (120)
..|||++= ...|..||+|+.+
T Consensus 142 ~~CG~i~~--------~~~p~~CP~Cg~~ 162 (170)
T 3pwf_A 142 PICGYTAV--------DEAPEYCPVCGAP 162 (170)
T ss_dssp TTTCCEEE--------SCCCSBCTTTCCB
T ss_pred CCCCCeeC--------CCCCCCCCCCCCC
Confidence 47999862 2235689999975
No 145
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=45.03 E-value=24 Score=20.52 Aligned_cols=33 Identities=12% Similarity=0.166 Sum_probs=18.3
Q ss_pred CCCCCCCccccCCCCccccccchhHHHHHHHHH
Q psy17995 44 GNCYECNQPLRRGNFRVQLFDDSSVEKEVEIRK 76 (120)
Q Consensus 44 ~~CP~C~~~~~~~~~~~~~f~d~~~~~e~~~rk 76 (120)
..||.||..........-.-+|..-+--+.+++
T Consensus 18 ~~CP~CG~~t~~ahParfSP~Dky~~yR~~lKk 50 (60)
T 2aus_D 18 ETCPVCGEKTKVAHPPRFSPEDPYGEYRRRLKR 50 (60)
T ss_dssp SBCTTTCSBCEESSCCCCCSCCTTHHHHHHHHH
T ss_pred ccCcCCCCccCCCCCCCCCCCCchHHHHHHHHH
Confidence 569999988765543323335554443344433
No 146
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=44.76 E-value=24 Score=20.00 Aligned_cols=44 Identities=23% Similarity=0.400 Sum_probs=24.8
Q ss_pred CccCcccCCCcccCCCCcccccccCCccchhHHHHHhhcCCCCCCCCCccccCCCC
Q psy17995 3 DQECPRCKTTKYRKPTLKLMVNICGHPLCEGCVDLLFLKGTGNCYECNQPLRRGNF 58 (120)
Q Consensus 3 ~~~CpiC~~~~~~~p~~~~~~~~CGH~fC~~Ci~~~~~~~~~~CP~C~~~~~~~~~ 58 (120)
...|+.|...++.+. . ++..=|..+-..| ..|..|+.+|....|
T Consensus 5 ~~~C~~C~~~I~~~~-~--~~~a~~~~~H~~C---------F~C~~C~~~L~~~~~ 48 (72)
T 1x61_A 5 SSGCGGCGEDVVGDG-A--GVVALDRVFHVGC---------FVCSTCRAQLRGQHF 48 (72)
T ss_dssp CCCCSSSCSCCCSSS-C--CEECSSSEECTTT---------CBCSSSCCBCTTSCE
T ss_pred CCCCccCCCccCCCc-e--EEEECCCeEcccC---------CcccccCCcCCcCcC
Confidence 346888886554321 1 2333355544444 567788887766654
No 147
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=44.38 E-value=4.4 Score=25.21 Aligned_cols=54 Identities=19% Similarity=0.540 Sum_probs=33.3
Q ss_pred CCccCcccCCCcccCCCCcccc-cccCCccchhHHHHHhh-cCCCCCCCCCccccCC
Q psy17995 2 DDQECPRCKTTKYRKPTLKLMV-NICGHPLCEGCVDLLFL-KGTGNCYECNQPLRRG 56 (120)
Q Consensus 2 d~~~CpiC~~~~~~~p~~~~~~-~~CGH~fC~~Ci~~~~~-~~~~~CP~C~~~~~~~ 56 (120)
++..|.||...-..+++ .|+. ..|.-.|-..|+..... .+...||.|.......
T Consensus 24 ~~~~C~vC~~~~s~~~~-~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~~~ 79 (88)
T 2l43_A 24 EDAVCSICMDGESQNSN-VILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRARP 79 (88)
T ss_dssp CCCCCSSCCSSSSCSEE-EEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTTSC
T ss_pred CCCcCCcCCCCCCCCCC-CEEECCCCCchhhcccCCCCccCCCceECccccCccchh
Confidence 35689999952111222 2333 37888899999875432 2457899997655443
No 148
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=44.11 E-value=5.7 Score=21.94 Aligned_cols=14 Identities=21% Similarity=0.415 Sum_probs=9.6
Q ss_pred CCCCCCCCCccccC
Q psy17995 42 GTGNCYECNQPLRR 55 (120)
Q Consensus 42 ~~~~CP~C~~~~~~ 55 (120)
.+..|+.|+..+..
T Consensus 38 ~~~~C~~C~~~f~~ 51 (73)
T 2ctu_A 38 KTPMCEKCRKDSCQ 51 (73)
T ss_dssp SSCCCHHHHHTCSC
T ss_pred CCCCCCCCChhhcC
Confidence 34678888877754
No 149
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=44.02 E-value=6.6 Score=17.13 Aligned_cols=12 Identities=25% Similarity=0.689 Sum_probs=8.8
Q ss_pred CCCCCCCCcccc
Q psy17995 43 TGNCYECNQPLR 54 (120)
Q Consensus 43 ~~~CP~C~~~~~ 54 (120)
+..|+.|++.+.
T Consensus 2 ~~~C~~C~k~f~ 13 (29)
T 2m0f_A 2 PLKCRECGKQFT 13 (29)
T ss_dssp CEECTTTSCEES
T ss_pred CccCCCCCCccC
Confidence 356899988765
No 150
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=43.39 E-value=11 Score=17.79 Aligned_cols=13 Identities=23% Similarity=0.738 Sum_probs=10.3
Q ss_pred CCCCCCCCccccC
Q psy17995 43 TGNCYECNQPLRR 55 (120)
Q Consensus 43 ~~~CP~C~~~~~~ 55 (120)
+..|+.|++.|..
T Consensus 11 ~~~C~~C~k~f~~ 23 (37)
T 1p7a_A 11 PFQCPDCDRSFSR 23 (37)
T ss_dssp SBCCTTTCCCBSS
T ss_pred CccCCCCCcccCc
Confidence 4689999988754
No 151
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=43.33 E-value=4 Score=25.69 Aligned_cols=13 Identities=23% Similarity=0.396 Sum_probs=9.6
Q ss_pred CCCccCcccCCCcc
Q psy17995 1 MDDQECPRCKTTKY 14 (120)
Q Consensus 1 ~d~~~CpiC~~~~~ 14 (120)
|..+.|.+|. .+|
T Consensus 33 m~~y~C~vCG-yvY 45 (87)
T 1s24_A 33 YLKWICITCG-HIY 45 (87)
T ss_dssp CCEEEETTTT-EEE
T ss_pred CceEECCCCC-eEe
Confidence 5678888888 465
No 152
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=43.21 E-value=7.1 Score=27.51 Aligned_cols=22 Identities=23% Similarity=0.439 Sum_probs=14.9
Q ss_pred cccCCccchhHHHHHhhcCCCCCCCCCcc
Q psy17995 24 NICGHPLCEGCVDLLFLKGTGNCYECNQP 52 (120)
Q Consensus 24 ~~CGH~fC~~Ci~~~~~~~~~~CP~C~~~ 52 (120)
..|||.+=.. ..|-.||+|+.+
T Consensus 159 ~~CG~~~~g~-------~~p~~CP~C~~~ 180 (191)
T 1lko_A 159 RNCGYVHEGT-------GAPELCPACAHP 180 (191)
T ss_dssp TTTCCEEEEE-------ECCSBCTTTCCB
T ss_pred CCCCCEeeCC-------CCCCCCCCCcCC
Confidence 4799986311 234589999985
No 153
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=42.98 E-value=22 Score=21.00 Aligned_cols=42 Identities=24% Similarity=0.555 Sum_probs=24.0
Q ss_pred ccCcccCCCcccCCCCcccccccCCccchhHHHHHhhcCCCCCCCCCccccCCCC
Q psy17995 4 QECPRCKTTKYRKPTLKLMVNICGHPLCEGCVDLLFLKGTGNCYECNQPLRRGNF 58 (120)
Q Consensus 4 ~~CpiC~~~~~~~p~~~~~~~~CGH~fC~~Ci~~~~~~~~~~CP~C~~~~~~~~~ 58 (120)
..|+.|...++... . +..=|..+-..| ..|-.|+.+|....|
T Consensus 16 ~~C~~C~~~I~~~e-~---v~a~~~~wH~~C---------F~C~~C~~~L~~~~~ 57 (82)
T 2co8_A 16 DLCALCGEHLYVLE-R---LCVNGHFFHRSC---------FRCHTCEATLWPGGY 57 (82)
T ss_dssp CBCSSSCCBCCTTT-B---CCBTTBCCBTTT---------CBCSSSCCBCCTTSE
T ss_pred CCCcccCCCcccce-E---EEECCCeeCCCc---------CEEcCCCCCcCCCce
Confidence 46888986554322 1 222243333334 578889988876543
No 154
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=42.96 E-value=22 Score=19.81 Aligned_cols=11 Identities=18% Similarity=0.425 Sum_probs=7.7
Q ss_pred CCCCCCCCccc
Q psy17995 43 TGNCYECNQPL 53 (120)
Q Consensus 43 ~~~CP~C~~~~ 53 (120)
.-.||.||--+
T Consensus 23 ~IrCpyCGyri 33 (48)
T 4ayb_P 23 GVRCPYCGYKI 33 (48)
T ss_dssp SSCCTTTCCSC
T ss_pred CcccCccCcEE
Confidence 36799998643
No 155
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=42.90 E-value=6.1 Score=27.58 Aligned_cols=27 Identities=41% Similarity=0.840 Sum_probs=21.5
Q ss_pred ccCCccchhHHHHHhhc---------CCCCCCCCCc
Q psy17995 25 ICGHPLCEGCVDLLFLK---------GTGNCYECNQ 51 (120)
Q Consensus 25 ~CGH~fC~~Ci~~~~~~---------~~~~CP~C~~ 51 (120)
.|...||..||.+++.. .+..|-.|.-
T Consensus 98 ~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P 133 (159)
T 3a1b_A 98 NCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGH 133 (159)
T ss_dssp TTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCS
T ss_pred CCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecCC
Confidence 69999999999998754 2356888864
No 156
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=42.35 E-value=21 Score=20.14 Aligned_cols=42 Identities=17% Similarity=0.364 Sum_probs=25.1
Q ss_pred ccCcccCCCcccCCCCcccccccCCccchhHHHHHhhcCCCCCCCCCccccCCCCc
Q psy17995 4 QECPRCKTTKYRKPTLKLMVNICGHPLCEGCVDLLFLKGTGNCYECNQPLRRGNFR 59 (120)
Q Consensus 4 ~~CpiC~~~~~~~p~~~~~~~~CGH~fC~~Ci~~~~~~~~~~CP~C~~~~~~~~~~ 59 (120)
..|+.|...++ .. ++..-|..+...| ..|-.|+.+|....|.
T Consensus 6 ~~C~~C~~~I~-~~----~~~a~~~~~H~~C---------F~C~~C~~~L~~~~f~ 47 (70)
T 2d8x_A 6 SGCHQCGEFII-GR----VIKAMNNSWHPEC---------FRCDLCQEVLADIGFV 47 (70)
T ss_dssp SBCSSSCCBCC-SC----CEEETTEEECTTT---------SBCSSSCCBCSSSCCE
T ss_pred CcCccCCCEec-ce----EEEECcccccccC---------CEeCCCCCcCCCCccE
Confidence 46888886443 22 2333344444444 5688888888776664
No 157
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=42.22 E-value=7.5 Score=17.04 Aligned_cols=12 Identities=33% Similarity=0.631 Sum_probs=9.1
Q ss_pred CCCCCCCccccC
Q psy17995 44 GNCYECNQPLRR 55 (120)
Q Consensus 44 ~~CP~C~~~~~~ 55 (120)
..|+.|+..+..
T Consensus 3 ~~C~~C~k~f~~ 14 (29)
T 1rik_A 3 FACPECPKRFMR 14 (29)
T ss_dssp EECSSSSCEESC
T ss_pred ccCCCCCchhCC
Confidence 569999887754
No 158
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=42.20 E-value=42 Score=27.73 Aligned_cols=40 Identities=15% Similarity=0.305 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhhhhhhcccCCc-cCHHHHHHHHHHHHHHHH
Q psy17995 68 VEKEVEIRKKLLKDYNKVEEDF-NSLAEYNDYLEEIEEIVF 107 (120)
Q Consensus 68 ~~~e~~~rk~~~k~~~~~~~~~-~~l~~y~~yle~~E~~i~ 107 (120)
+|..|+|..+.++.=|...-++ .++..|+++..++|.++.
T Consensus 150 LEvDIdiqirsCKgsCsr~~~~~vd~~sY~~~QKQLeQv~a 190 (562)
T 3ghg_A 150 LEVDIDIKIRSCRGSCSRALAREVDLKDYEDQQKQLEQVIA 190 (562)
T ss_dssp HHHHHHHHHHHGGGTBSCCCCCCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhccccccchheeecchHHHHHHHHHHHHHhh
Confidence 3444444444444444444566 899999999999998875
No 159
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=42.02 E-value=7 Score=23.16 Aligned_cols=9 Identities=33% Similarity=0.921 Sum_probs=5.0
Q ss_pred CCCCCCccc
Q psy17995 45 NCYECNQPL 53 (120)
Q Consensus 45 ~CP~C~~~~ 53 (120)
.|..|++.|
T Consensus 36 ~C~~Cgt~L 44 (63)
T 3j20_W 36 RCLICGATL 44 (63)
T ss_dssp ECSSSCCEE
T ss_pred EccCcCCEE
Confidence 466665544
No 160
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=41.45 E-value=8.3 Score=16.78 Aligned_cols=13 Identities=31% Similarity=0.444 Sum_probs=9.5
Q ss_pred CCCCCCCCccccC
Q psy17995 43 TGNCYECNQPLRR 55 (120)
Q Consensus 43 ~~~CP~C~~~~~~ 55 (120)
+..|+.|++.|..
T Consensus 3 ~~~C~~C~k~f~~ 15 (27)
T 2kvh_A 3 PFSCSLCPQRSRD 15 (27)
T ss_dssp CEECSSSSCEESS
T ss_pred CccCCCcChhhCC
Confidence 3579999887753
No 161
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=41.44 E-value=20 Score=17.58 Aligned_cols=26 Identities=27% Similarity=0.576 Sum_probs=15.2
Q ss_pred cCcccCCCcccCCCCcccccccCCccchhH
Q psy17995 5 ECPRCKTTKYRKPTLKLMVNICGHPLCEGC 34 (120)
Q Consensus 5 ~CpiC~~~~~~~p~~~~~~~~CGH~fC~~C 34 (120)
.||.|...+|..-. +..=|..|-.+|
T Consensus 5 ~C~~C~k~Vy~~Ek----~~~~g~~~Hk~C 30 (31)
T 1zfo_A 5 NCARCGKIVYPTEK----VNCLDKFWHKAC 30 (31)
T ss_dssp BCSSSCSBCCGGGC----CCSSSSCCCGGG
T ss_pred cCCccCCEEeccee----EEECCeEecccC
Confidence 69999877765421 223355555555
No 162
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=41.22 E-value=6.3 Score=23.55 Aligned_cols=8 Identities=38% Similarity=1.286 Sum_probs=5.5
Q ss_pred ccCcccCC
Q psy17995 4 QECPRCKT 11 (120)
Q Consensus 4 ~~CpiC~~ 11 (120)
.+||-|..
T Consensus 8 VKCp~C~n 15 (66)
T 1qxf_A 8 VKCPDCEH 15 (66)
T ss_dssp EECTTTCC
T ss_pred EECCCCCC
Confidence 47888874
No 163
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=41.09 E-value=6.5 Score=19.50 Aligned_cols=9 Identities=44% Similarity=1.184 Sum_probs=7.0
Q ss_pred CccCcccCC
Q psy17995 3 DQECPRCKT 11 (120)
Q Consensus 3 ~~~CpiC~~ 11 (120)
.+.||+|+.
T Consensus 3 k~~CpvCk~ 11 (28)
T 2jvx_A 3 DFCCPKCQY 11 (28)
T ss_dssp CEECTTSSC
T ss_pred cccCccccc
Confidence 568999985
No 164
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=40.85 E-value=20 Score=20.23 Aligned_cols=43 Identities=28% Similarity=0.536 Sum_probs=25.9
Q ss_pred ccCcccCCCcccCCCCcccccccCCccchhHHHHHhhcCCCCCCCCCccccCCCC
Q psy17995 4 QECPRCKTTKYRKPTLKLMVNICGHPLCEGCVDLLFLKGTGNCYECNQPLRRGNF 58 (120)
Q Consensus 4 ~~CpiC~~~~~~~p~~~~~~~~CGH~fC~~Ci~~~~~~~~~~CP~C~~~~~~~~~ 58 (120)
..|+.|...++... . ++..-|..+-..| ..|..|+.+|....|
T Consensus 6 ~~C~~C~~~I~~~~-~--~~~a~~~~~H~~C---------F~C~~C~~~L~~~~~ 48 (72)
T 1wyh_A 6 SGCSACGETVMPGS-R--KLEYGGQTWHEHC---------FLCSGCEQPLGSRSF 48 (72)
T ss_dssp CBCSSSCCBCCSSS-C--EECSTTCCEETTT---------CBCTTTCCBTTTSCE
T ss_pred CCCccCCCccccCc-c--EEEECccccCccc---------CeECCCCCcCCCCcc
Confidence 47999986554321 1 2344466554444 578889988875443
No 165
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=40.80 E-value=9.7 Score=24.18 Aligned_cols=45 Identities=20% Similarity=0.490 Sum_probs=27.7
Q ss_pred CccCcccCCCcccCCCCcccc-cccCCccchhHHHHHhhc---CCCCCCCCC
Q psy17995 3 DQECPRCKTTKYRKPTLKLMV-NICGHPLCEGCVDLLFLK---GTGNCYECN 50 (120)
Q Consensus 3 ~~~CpiC~~~~~~~p~~~~~~-~~CGH~fC~~Ci~~~~~~---~~~~CP~C~ 50 (120)
+..|.+|...--.++ |+. ..|+..|-..|+...... +...||.|.
T Consensus 7 ~~~C~~C~~~g~~~~---ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 7 GANCAVCDSPGDLLD---QFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CSCBTTTCCCCCTTT---SEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCcCCCCCCCCcC---CeECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 568999985311111 222 489999999999765432 345566553
No 166
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=40.61 E-value=18 Score=20.19 Aligned_cols=42 Identities=19% Similarity=0.328 Sum_probs=25.0
Q ss_pred CccCcccCCCcccCCCCcccccccCCccchhHHHHHhhcCCCCCCCCCccccCCCC
Q psy17995 3 DQECPRCKTTKYRKPTLKLMVNICGHPLCEGCVDLLFLKGTGNCYECNQPLRRGNF 58 (120)
Q Consensus 3 ~~~CpiC~~~~~~~p~~~~~~~~CGH~fC~~Ci~~~~~~~~~~CP~C~~~~~~~~~ 58 (120)
...|+.|...++ .. ++..=|..+-..| ..|..|+.+|....|
T Consensus 5 ~~~C~~C~~~I~-~~----~~~a~~~~~H~~C---------F~C~~C~~~L~~~~~ 46 (66)
T 1nyp_A 5 VPICGACRRPIE-GR----VVNAMGKQWHVEH---------FVCAKCEKPFLGHRH 46 (66)
T ss_dssp CCEETTTTEECC-SC----EECCTTSBEETTT---------CBCTTTCCBCSSSCC
T ss_pred CCCCcccCCEec-ce----EEEECccccccCc---------CEECCCCCCCCCCce
Confidence 347888986554 32 2333355444444 578889988865433
No 167
>1ovx_A ATP-dependent CLP protease ATP-binding subunit CL; treble CLEF zinc finger, homodimer, metal binding protein; NMR {Escherichia coli} SCOP: g.39.1.11
Probab=40.46 E-value=28 Score=20.73 Aligned_cols=35 Identities=26% Similarity=0.438 Sum_probs=21.7
Q ss_pred CccCcccCCCcccCCCCcccccccCCccchhHHHHHhh
Q psy17995 3 DQECPRCKTTKYRKPTLKLMVNICGHPLCEGCVDLLFL 40 (120)
Q Consensus 3 ~~~CpiC~~~~~~~p~~~~~~~~CGH~fC~~Ci~~~~~ 40 (120)
.+.|+-|... .+...+|+..+ |=.+|..|+.....
T Consensus 18 ~~~CSFCGK~--e~eV~~LIaGp-gvyICdeCI~~c~~ 52 (67)
T 1ovx_A 18 LLYCSFCGKS--QHEVRKLIAGP-SVYICDECVDLCND 52 (67)
T ss_dssp CCCCTTTCCC--TTTSSSEEECS-SCEEEHHHHHHHHH
T ss_pred CcEecCCCCC--HHHHcccCCCC-CCChhHHHHHHHHH
Confidence 4679999852 22222333335 65699999987543
No 168
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=40.42 E-value=9.9 Score=27.10 Aligned_cols=21 Identities=33% Similarity=0.645 Sum_probs=15.1
Q ss_pred cccCCccchhHHHHHhhcCCCCCCCCCcc
Q psy17995 24 NICGHPLCEGCVDLLFLKGTGNCYECNQP 52 (120)
Q Consensus 24 ~~CGH~fC~~Ci~~~~~~~~~~CP~C~~~ 52 (120)
..|||.+= . ..+..||+|+.+
T Consensus 175 ~~CG~i~~-g-------~~p~~CP~C~~~ 195 (202)
T 1yuz_A 175 PICGYIHK-G-------EDFEKCPICFRP 195 (202)
T ss_dssp SSSCCEEE-S-------SCCSBCTTTCCB
T ss_pred CCCCCEEc-C-------cCCCCCCCCCCC
Confidence 47999862 1 235689999975
No 169
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=39.92 E-value=15 Score=28.98 Aligned_cols=28 Identities=32% Similarity=0.565 Sum_probs=22.4
Q ss_pred ccCCccchhHHHHHhhc---------CCCCCCCCCcc
Q psy17995 25 ICGHPLCEGCVDLLFLK---------GTGNCYECNQP 52 (120)
Q Consensus 25 ~CGH~fC~~Ci~~~~~~---------~~~~CP~C~~~ 52 (120)
.|...||..||.+.+.. .+..|-.|.-.
T Consensus 112 ~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~ 148 (386)
T 2pv0_B 112 DCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPS 148 (386)
T ss_dssp TCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSC
T ss_pred CCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCc
Confidence 79999999999998742 34679998753
No 170
>3u5c_b RP61, YS20, 40S ribosomal protein S27-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_X 3u5g_b
Probab=39.47 E-value=11 Score=23.51 Aligned_cols=10 Identities=30% Similarity=0.667 Sum_probs=6.1
Q ss_pred CCCCCCCccc
Q psy17995 44 GNCYECNQPL 53 (120)
Q Consensus 44 ~~CP~C~~~~ 53 (120)
-.|..|+..|
T Consensus 54 V~C~~Cg~~L 63 (82)
T 3u5c_b 54 VTCESCSTIL 63 (82)
T ss_dssp CCCSSSCCCC
T ss_pred EEccccCCEE
Confidence 4566666655
No 171
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=39.42 E-value=8.7 Score=16.74 Aligned_cols=13 Identities=15% Similarity=0.432 Sum_probs=9.4
Q ss_pred CCCCCCCCccccC
Q psy17995 43 TGNCYECNQPLRR 55 (120)
Q Consensus 43 ~~~CP~C~~~~~~ 55 (120)
+..|+.|++.|..
T Consensus 3 ~~~C~~C~k~f~~ 15 (28)
T 2kvf_A 3 PYSCSVCGKRFSL 15 (28)
T ss_dssp SEECSSSCCEESC
T ss_pred CccCCCCCcccCC
Confidence 3569999887753
No 172
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1
Probab=39.27 E-value=16 Score=17.01 Aligned_cols=13 Identities=31% Similarity=0.585 Sum_probs=9.8
Q ss_pred CCCCCCCCccccC
Q psy17995 43 TGNCYECNQPLRR 55 (120)
Q Consensus 43 ~~~CP~C~~~~~~ 55 (120)
+..|+.|++.|..
T Consensus 2 p~~C~~C~k~F~~ 14 (33)
T 1rim_A 2 KFACPECPKRFMR 14 (33)
T ss_dssp CCCCSSSCCCCSS
T ss_pred cccCCCCCchhCC
Confidence 3579999987753
No 173
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=39.27 E-value=6.4 Score=23.29 Aligned_cols=49 Identities=16% Similarity=0.387 Sum_probs=31.5
Q ss_pred ccCcccCCCcccCCCCcccc-cccCCccchhHHHHHhhc---CCCCCCCCCccccC
Q psy17995 4 QECPRCKTTKYRKPTLKLMV-NICGHPLCEGCVDLLFLK---GTGNCYECNQPLRR 55 (120)
Q Consensus 4 ~~CpiC~~~~~~~p~~~~~~-~~CGH~fC~~Ci~~~~~~---~~~~CP~C~~~~~~ 55 (120)
..|++|.. .. +.. .|+. ..|..-|-..|+...... +...||.|...+.+
T Consensus 19 ~~C~~C~~-~~-~~~-~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~k 71 (75)
T 2k16_A 19 WICPGCNK-PD-DGS-PMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIKK 71 (75)
T ss_dssp ECBTTTTB-CC-SSC-CEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHCS
T ss_pred cCCCCCCC-CC-CCC-CEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchhh
Confidence 46999985 32 221 2232 378888888998754432 34679999876654
No 174
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=45.16 E-value=6.4 Score=17.43 Aligned_cols=12 Identities=17% Similarity=0.670 Sum_probs=9.1
Q ss_pred CCCCCCCccccC
Q psy17995 44 GNCYECNQPLRR 55 (120)
Q Consensus 44 ~~CP~C~~~~~~ 55 (120)
..|+.|++.|..
T Consensus 3 ~~C~~C~k~f~~ 14 (29)
T 2lvt_A 3 CQCVMCGKAFTQ 14 (29)
Confidence 578999887754
No 175
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=38.77 E-value=12 Score=26.28 Aligned_cols=45 Identities=18% Similarity=0.332 Sum_probs=30.4
Q ss_pred CccCcccCCCcccCCCCcccc-cccCCccchhHHHHHhhc---CCCCCCCCCccc
Q psy17995 3 DQECPRCKTTKYRKPTLKLMV-NICGHPLCEGCVDLLFLK---GTGNCYECNQPL 53 (120)
Q Consensus 3 ~~~CpiC~~~~~~~p~~~~~~-~~CGH~fC~~Ci~~~~~~---~~~~CP~C~~~~ 53 (120)
+..|.+|... . + ++. ..|...|...|+...+.. +...||.|...-
T Consensus 2 ~~~C~~C~~~---g-~--ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~~ 50 (189)
T 2ro1_A 2 ATICRVCQKP---G-D--LVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP 50 (189)
T ss_dssp CCCBTTTCCC---S-S--CCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCSC
T ss_pred CCcCccCCCC---C-c--eeECCCCCchhccccCCCCcccCCCCCCCCcCccCCC
Confidence 4579999952 1 1 233 379899999998765442 457899997643
No 176
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=38.72 E-value=16 Score=21.88 Aligned_cols=21 Identities=19% Similarity=0.491 Sum_probs=14.0
Q ss_pred ccCCccchhHHHHHhhcCCCCCCCCCc
Q psy17995 25 ICGHPLCEGCVDLLFLKGTGNCYECNQ 51 (120)
Q Consensus 25 ~CGH~fC~~Ci~~~~~~~~~~CP~C~~ 51 (120)
.||+.|=.. ......||.|+.
T Consensus 33 ~CG~~~e~~------~~d~irCp~CG~ 53 (70)
T 1twf_L 33 ECSSKLSLS------RTDAVRCKDCGH 53 (70)
T ss_dssp SSCCEECCC------TTSTTCCSSSCC
T ss_pred CCCCcceeC------CCCCccCCCCCc
Confidence 688876322 234578999998
No 177
>2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_6
Probab=38.54 E-value=8.5 Score=23.90 Aligned_cols=9 Identities=33% Similarity=0.770 Sum_probs=4.4
Q ss_pred CCCCCCccc
Q psy17995 45 NCYECNQPL 53 (120)
Q Consensus 45 ~CP~C~~~~ 53 (120)
.|..|+..|
T Consensus 53 ~C~~Cg~~L 61 (81)
T 2xzm_6 53 ICEKCSAIL 61 (81)
T ss_dssp ECSSSCCEE
T ss_pred EccCCCCEE
Confidence 355555544
No 178
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=38.32 E-value=13 Score=21.16 Aligned_cols=46 Identities=22% Similarity=0.465 Sum_probs=30.1
Q ss_pred CccCcccCCCcccCCCCcccc-cccCCccchhHHHHHhhc---CCCCCCCCCcccc
Q psy17995 3 DQECPRCKTTKYRKPTLKLMV-NICGHPLCEGCVDLLFLK---GTGNCYECNQPLR 54 (120)
Q Consensus 3 ~~~CpiC~~~~~~~p~~~~~~-~~CGH~fC~~Ci~~~~~~---~~~~CP~C~~~~~ 54 (120)
+..|.+|... . .|+. ..|...|-..|+...+.. +...||.|.....
T Consensus 9 ~~~C~vC~~~---g---~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~ 58 (61)
T 1mm2_A 9 MEFCRVCKDG---G---ELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPAL 58 (61)
T ss_dssp CSSCTTTCCC---S---SCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTCC
T ss_pred CCcCCCCCCC---C---CEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCchh
Confidence 4579999841 1 1233 378888888998764442 3467999976543
No 179
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=38.31 E-value=14 Score=17.10 Aligned_cols=13 Identities=23% Similarity=0.567 Sum_probs=10.2
Q ss_pred CCCCCCCCccccC
Q psy17995 43 TGNCYECNQPLRR 55 (120)
Q Consensus 43 ~~~CP~C~~~~~~ 55 (120)
+..|+.|++.|..
T Consensus 9 ~~~C~~C~k~f~~ 21 (36)
T 2elr_A 9 THLCDMCGKKFKS 21 (36)
T ss_dssp SCBCTTTCCBCSS
T ss_pred CeecCcCCCCcCc
Confidence 4689999988753
No 180
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=37.20 E-value=3.4 Score=25.90 Aligned_cols=48 Identities=21% Similarity=0.400 Sum_probs=28.9
Q ss_pred CCCccCcccCCCcccCCCCcccc-cccCCccchhHHHHHhhc---CCCCCCCCCc
Q psy17995 1 MDDQECPRCKTTKYRKPTLKLMV-NICGHPLCEGCVDLLFLK---GTGNCYECNQ 51 (120)
Q Consensus 1 ~d~~~CpiC~~~~~~~p~~~~~~-~~CGH~fC~~Ci~~~~~~---~~~~CP~C~~ 51 (120)
+++..|.||... .++. .|+. ..|...|-..|+...+.. +...||.|..
T Consensus 14 ~~~~~C~vC~~~--~~~~-~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~ 65 (92)
T 2e6r_A 14 IDSYICQVCSRG--DEDD-KLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCIL 65 (92)
T ss_dssp CCCCCCSSSCCS--GGGG-GCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHH
T ss_pred cCCCCCccCCCc--CCCC-CEEEcCCCCchhccccCCCCcccCCCCCcCCccCcC
Confidence 355689999952 2222 1222 378877777888754432 3457998855
No 181
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=43.24 E-value=7.2 Score=17.22 Aligned_cols=13 Identities=15% Similarity=0.506 Sum_probs=9.6
Q ss_pred CCCCCCCCccccC
Q psy17995 43 TGNCYECNQPLRR 55 (120)
Q Consensus 43 ~~~CP~C~~~~~~ 55 (120)
+..|+.|++.|..
T Consensus 3 ~~~C~~C~k~f~~ 15 (30)
T 2lvr_A 3 PYVCIHCQRQFAD 15 (30)
Confidence 3578999887754
No 182
>3iz6_X 40S ribosomal protein S27 (S27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=36.89 E-value=13 Score=23.30 Aligned_cols=10 Identities=30% Similarity=0.551 Sum_probs=5.4
Q ss_pred CCCCCCCccc
Q psy17995 44 GNCYECNQPL 53 (120)
Q Consensus 44 ~~CP~C~~~~ 53 (120)
-.|..|++.|
T Consensus 56 V~C~~CgtvL 65 (86)
T 3iz6_X 56 VVCPGCQTVL 65 (86)
T ss_dssp CCCSSSCCCC
T ss_pred EEccCCCCEe
Confidence 3466665554
No 183
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=36.58 E-value=16 Score=22.82 Aligned_cols=26 Identities=19% Similarity=0.516 Sum_probs=16.8
Q ss_pred ccCcccCCCccc-CCCCcccccccCCccchh
Q psy17995 4 QECPRCKTTKYR-KPTLKLMVNICGHPLCEG 33 (120)
Q Consensus 4 ~~CpiC~~~~~~-~p~~~~~~~~CGH~fC~~ 33 (120)
..|..|...+.. .| +.-.||..||..
T Consensus 26 ~rC~~C~kkvgl~~~----f~CrCg~~FC~~ 52 (85)
T 1wff_A 26 KHCFLCGKKTGLATS----FECRCGNNFCAS 52 (85)
T ss_dssp CBCSSSCCBCSSSSC----EECTTCCEECTT
T ss_pred ccchhhCCeecccCC----eEcCCCCEeccc
Confidence 468899864333 23 222699999875
No 184
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=36.32 E-value=15 Score=20.83 Aligned_cols=23 Identities=30% Similarity=0.897 Sum_probs=15.7
Q ss_pred CCccCcccCCCcccCCCCcccccccCCccchhHH
Q psy17995 2 DDQECPRCKTTKYRKPTLKLMVNICGHPLCEGCV 35 (120)
Q Consensus 2 d~~~CpiC~~~~~~~p~~~~~~~~CGH~fC~~Ci 35 (120)
|..+|+-|.+ +-.| -+++|..|.
T Consensus 10 D~WkC~~C~k--~N~P---------l~ryC~rCw 32 (53)
T 2cr8_A 10 DEWQCTECKK--FNSP---------SKRYCFRCW 32 (53)
T ss_dssp CCEECSSSCC--EECS---------SCCBCTTTC
T ss_pred ceeecccccc--cCCC---------ccchhHHHH
Confidence 4458999984 3444 478888884
No 185
>1erd_A Pheromone ER-2; NMR {Euplotes raikovi} SCOP: a.10.1.1
Probab=35.98 E-value=4.8 Score=21.04 Aligned_cols=27 Identities=30% Similarity=0.723 Sum_probs=18.7
Q ss_pred cccCCccchhHHHHHhhc--CCCCCCCCC
Q psy17995 24 NICGHPLCEGCVDLLFLK--GTGNCYECN 50 (120)
Q Consensus 24 ~~CGH~fC~~Ci~~~~~~--~~~~CP~C~ 50 (120)
..|-|.+|..|-..++.. +...=|.|+
T Consensus 10 ascehtmcgycqgplymtcigittdpecg 38 (40)
T 1erd_A 10 ASCEHTMCGYCQGPLYMTCIGITTDPECG 38 (40)
T ss_dssp HHTCGGGGGGSCHHHHHHHHHHHTCTTTT
T ss_pred HhccccccccccCCeeEEEEeeccCCCCC
Confidence 479999999998776653 223456665
No 186
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=35.97 E-value=7.9 Score=20.04 Aligned_cols=13 Identities=23% Similarity=0.641 Sum_probs=8.0
Q ss_pred ccCcccCCCcccCC
Q psy17995 4 QECPRCKTTKYRKP 17 (120)
Q Consensus 4 ~~CpiC~~~~~~~p 17 (120)
+.||+|+. .+.++
T Consensus 6 FiCP~C~~-~l~s~ 18 (34)
T 3mjh_B 6 FICPQCMK-SLGSA 18 (34)
T ss_dssp EECTTTCC-EESSH
T ss_pred cCCcHHHH-HcCCH
Confidence 57888875 34444
No 187
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.78 E-value=51 Score=18.84 Aligned_cols=37 Identities=16% Similarity=0.426 Sum_probs=22.9
Q ss_pred ccCcccCCCcccCCCCcccccccCCccchhHHHHHhhcCCCCCCCCCcccc
Q psy17995 4 QECPRCKTTKYRKPTLKLMVNICGHPLCEGCVDLLFLKGTGNCYECNQPLR 54 (120)
Q Consensus 4 ~~CpiC~~~~~~~p~~~~~~~~CGH~fC~~Ci~~~~~~~~~~CP~C~~~~~ 54 (120)
..|+.|...++- . ++..-|..+-..| ..|-.|+.+|.
T Consensus 6 ~~C~~C~~~I~~-~----~v~a~~~~wH~~C---------F~C~~C~~~L~ 42 (73)
T 1wig_A 6 SGCDSCEKYITG-R----VLEAGEKHYHPSC---------ALCVRCGQMFA 42 (73)
T ss_dssp CSCSSSCCCCSS-C----CBCCSSCCBCTTT---------SCCSSSCCCCC
T ss_pred CCcccCCCEecC-e----eEEeCCCCCCCCc---------CEeCCCCCCCC
Confidence 478999865532 2 2344455554444 57888888886
No 188
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=35.63 E-value=4.9 Score=30.78 Aligned_cols=45 Identities=20% Similarity=0.473 Sum_probs=27.0
Q ss_pred CccCcccCCCcccCCCCcccc---cccCCc--cchhHHHHHhhcCCCCCCCCCcc
Q psy17995 3 DQECPRCKTTKYRKPTLKLMV---NICGHP--LCEGCVDLLFLKGTGNCYECNQP 52 (120)
Q Consensus 3 ~~~CpiC~~~~~~~p~~~~~~---~~CGH~--fC~~Ci~~~~~~~~~~CP~C~~~ 52 (120)
.-.||+|.+ .|.+.++. ..=|++ +|.-|-.. |.-.-..||.|+..
T Consensus 182 ~~~CPvCGs----~P~~s~l~~~g~~~G~R~l~Cs~C~t~-W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 182 RTLCPACGS----PPMAGMIRQGGKETGLRYLSCSLCACE-WHYVRIKCSHCEES 231 (309)
T ss_dssp CSSCTTTCC----CEEEEEEEC----CCEEEEEETTTCCE-EECCTTSCSSSCCC
T ss_pred CCCCCCCCC----cCceeEEeecCCCCCcEEEEeCCCCCE-EeecCcCCcCCCCC
Confidence 357999995 34333222 134644 57888433 55444789999986
No 189
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.61 E-value=31 Score=19.33 Aligned_cols=9 Identities=33% Similarity=0.859 Sum_probs=4.9
Q ss_pred cCcccCCCc
Q psy17995 5 ECPRCKTTK 13 (120)
Q Consensus 5 ~CpiC~~~~ 13 (120)
.|+.|...+
T Consensus 7 ~C~~C~~~I 15 (70)
T 2d8z_A 7 GCVQCKKPI 15 (70)
T ss_dssp BCSSSCCBC
T ss_pred CCcccCCee
Confidence 466666433
No 190
>3epz_A DNA (cytosine-5)-methyltransferase 1; winged helix domain, SH3-like barrel, cell cycle, metal BIND binding,DNA replication; HET: DNA BGC; 2.31A {Homo sapiens}
Probab=35.55 E-value=31 Score=25.93 Aligned_cols=50 Identities=18% Similarity=0.341 Sum_probs=29.3
Q ss_pred CCCCCCCCCccccCCCCccccccchhHHHHHHHHHHhhhhhhcccCCccC
Q psy17995 42 GTGNCYECNQPLRRGNFRVQLFDDSSVEKEVEIRKKLLKDYNKVEEDFNS 91 (120)
Q Consensus 42 ~~~~CP~C~~~~~~~~~~~~~f~d~~~~~e~~~rk~~~k~~~~~~~~~~~ 91 (120)
.+..|+.|+..+...+++=+-.++..++..+.+-.--+.+|..+++.|.+
T Consensus 17 ~~~~c~~c~q~ld~p~l~y~~~p~da~Ee~~~lt~~~l~l~~~~e~~~~~ 66 (268)
T 3epz_A 17 QGPKCIQCGQYLDDPDLKYGQHPPDAVDEPQMLTNEKLSIFDANESGFES 66 (268)
T ss_dssp -CCBCTTTCCBTTCTTCCBCCCCTTCBCHHHHHHHHHHHHHCC-------
T ss_pred CCchhHHHHhhccCccccccCCCCchhhhhhhhcCCceEEecCCcccccc
Confidence 35789999998876555433345666677766655567777766655543
No 191
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=35.49 E-value=10 Score=18.56 Aligned_cols=11 Identities=27% Similarity=0.555 Sum_probs=8.1
Q ss_pred CCCCCCCcccc
Q psy17995 44 GNCYECNQPLR 54 (120)
Q Consensus 44 ~~CP~C~~~~~ 54 (120)
.+||+|+....
T Consensus 7 vqcpvcqq~mp 17 (29)
T 3vhs_A 7 VQCPVCQQMMP 17 (29)
T ss_dssp EECTTTCCEEE
T ss_pred eeChHHHHhCc
Confidence 46999987553
No 192
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.03 E-value=48 Score=19.26 Aligned_cols=39 Identities=18% Similarity=0.369 Sum_probs=23.4
Q ss_pred ccCcccCCCcccCCCCcccccccCCccchhHHHHHhhcCCCCCCCCCccccCC
Q psy17995 4 QECPRCKTTKYRKPTLKLMVNICGHPLCEGCVDLLFLKGTGNCYECNQPLRRG 56 (120)
Q Consensus 4 ~~CpiC~~~~~~~p~~~~~~~~CGH~fC~~Ci~~~~~~~~~~CP~C~~~~~~~ 56 (120)
..|+.|...++ .. ++..-|..+-..| ..|..|+.+|...
T Consensus 16 ~~C~~C~~~I~-~~----~v~a~~~~~H~~C---------F~C~~C~~~L~~~ 54 (79)
T 2cor_A 16 YICQKCHAIID-EQ----PLIFKNDPYHPDH---------FNCANCGKELTAD 54 (79)
T ss_dssp CBCTTTCCBCC-SC----CCCCSSSCCCTTT---------SBCSSSCCBCCTT
T ss_pred CCCccCCCEec-ce----EEEECcceeCCCC---------CEeCCCCCccCCC
Confidence 46888886554 32 1233344443344 5788899988754
No 193
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=34.88 E-value=12 Score=25.87 Aligned_cols=45 Identities=18% Similarity=0.376 Sum_probs=30.2
Q ss_pred CccCcccCCCcccCCCCcccc-cccCCccchhHHHHHhhc---CCCCCCCCCccc
Q psy17995 3 DQECPRCKTTKYRKPTLKLMV-NICGHPLCEGCVDLLFLK---GTGNCYECNQPL 53 (120)
Q Consensus 3 ~~~CpiC~~~~~~~p~~~~~~-~~CGH~fC~~Ci~~~~~~---~~~~CP~C~~~~ 53 (120)
+..|.+|... .+ ++. ..|...|...|+...+.. +...||.|+..-
T Consensus 4 ~~~C~~C~~~----g~--ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 4 EDWCAVCQNG----GE--LLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp CSSCTTTCCC----SS--CEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCccccCCCC----Ce--eeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 3469999842 11 222 379988999998665443 347899998744
No 194
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.76 E-value=23 Score=20.09 Aligned_cols=44 Identities=18% Similarity=0.410 Sum_probs=25.8
Q ss_pred ccCcccCCCccc--CCCCcccccccCCccchhHHHHHhhcCCCCCCCCCccccCCCCc
Q psy17995 4 QECPRCKTTKYR--KPTLKLMVNICGHPLCEGCVDLLFLKGTGNCYECNQPLRRGNFR 59 (120)
Q Consensus 4 ~~CpiC~~~~~~--~p~~~~~~~~CGH~fC~~Ci~~~~~~~~~~CP~C~~~~~~~~~~ 59 (120)
..|+.|...++. +.. ++..-|..+-..| ..|..|+.+|....|.
T Consensus 6 ~~C~~C~~~I~~~~~~~---~~~a~~~~wH~~C---------F~C~~C~~~L~~~~f~ 51 (72)
T 1x4l_A 6 SGCAGCTNPISGLGGTK---YISFEERQWHNDC---------FNCKKCSLSLVGRGFL 51 (72)
T ss_dssp CSBTTTTBCCCCSSSCS---CEECSSCEECTTT---------CBCSSSCCBCTTSCCE
T ss_pred CCCcCCCccccCCCCcc---eEEECCcccCccc---------CEeccCCCcCCCCccE
Confidence 468888865542 111 2334455554444 5678888887766654
No 195
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=34.70 E-value=13 Score=22.15 Aligned_cols=49 Identities=18% Similarity=0.590 Sum_probs=30.1
Q ss_pred CCccCcccCCCcccCCCCcccc-cccCCccchhHHHHHhh-cCCCCCCCCCc
Q psy17995 2 DDQECPRCKTTKYRKPTLKLMV-NICGHPLCEGCVDLLFL-KGTGNCYECNQ 51 (120)
Q Consensus 2 d~~~CpiC~~~~~~~p~~~~~~-~~CGH~fC~~Ci~~~~~-~~~~~CP~C~~ 51 (120)
++..|.||...-..+++ .++. ..|.-.|-..|+..... .+...||.|..
T Consensus 15 ~~~~C~vC~~~~s~~~~-~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 15 EDAVCSICMDGESQNSN-VILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp SSCSCSSSCCCCCCSSS-CEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCC-CEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 35689999852112232 2333 48998999999875322 24467888854
No 196
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=34.59 E-value=7.1 Score=17.21 Aligned_cols=13 Identities=15% Similarity=0.243 Sum_probs=9.4
Q ss_pred CCCCCCCCccccC
Q psy17995 43 TGNCYECNQPLRR 55 (120)
Q Consensus 43 ~~~CP~C~~~~~~ 55 (120)
+..|+.|++.+..
T Consensus 3 ~~~C~~C~k~f~~ 15 (27)
T 2kvg_A 3 PYRCPLCRAGCPS 15 (27)
T ss_dssp TEEETTTTEEESC
T ss_pred CcCCCCCCcccCC
Confidence 3578999887753
No 197
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A
Probab=34.54 E-value=21 Score=17.78 Aligned_cols=14 Identities=29% Similarity=0.643 Sum_probs=11.0
Q ss_pred CCCCCCCCccccCC
Q psy17995 43 TGNCYECNQPLRRG 56 (120)
Q Consensus 43 ~~~CP~C~~~~~~~ 56 (120)
+..|+.|++.|...
T Consensus 12 ~~~C~~C~k~f~~~ 25 (46)
T 2ely_A 12 PFKCVECGKGFSRR 25 (46)
T ss_dssp SBCCSSSCCCBSST
T ss_pred CcccCccCcccCCH
Confidence 46899999988643
No 198
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=34.44 E-value=12 Score=17.69 Aligned_cols=13 Identities=15% Similarity=0.375 Sum_probs=10.2
Q ss_pred CCCCCCCCccccC
Q psy17995 43 TGNCYECNQPLRR 55 (120)
Q Consensus 43 ~~~CP~C~~~~~~ 55 (120)
+..|+.|++.|..
T Consensus 9 ~~~C~~C~k~f~~ 21 (37)
T 2elp_A 9 AMKCPYCDFYFMK 21 (37)
T ss_dssp CEECSSSSCEECS
T ss_pred CeECCCCChhhcc
Confidence 4679999988764
No 199
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.30 E-value=25 Score=20.15 Aligned_cols=43 Identities=33% Similarity=0.550 Sum_probs=24.5
Q ss_pred ccCcccCCCcccCCCCcccccccCCccchhHHHHHhhcCCCCCCCCCccccCCCC
Q psy17995 4 QECPRCKTTKYRKPTLKLMVNICGHPLCEGCVDLLFLKGTGNCYECNQPLRRGNF 58 (120)
Q Consensus 4 ~~CpiC~~~~~~~p~~~~~~~~CGH~fC~~Ci~~~~~~~~~~CP~C~~~~~~~~~ 58 (120)
..|+.|...++.... ++..-|..+-..| ..|-.|+.+|....|
T Consensus 12 ~~C~~C~~~I~~~~~---~~~a~~~~~H~~C---------F~C~~C~~~L~~~~~ 54 (77)
T 1g47_A 12 ATCERCKGGFAPAEK---IVNSNGELYHEQC---------FVCAQCFQQFPEGLF 54 (77)
T ss_dssp CBCSSSCCBCCSTTT---CEEETTEEECTTT---------CCCTTTCCCCGGGCS
T ss_pred CCchhcCCccCCCce---EEEeCccEecccc---------CeECCCCCCCCCCCe
Confidence 478899865542221 2233354443344 578889988875443
No 200
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Probab=34.16 E-value=15 Score=16.86 Aligned_cols=12 Identities=17% Similarity=0.418 Sum_probs=9.3
Q ss_pred CCCCCCCCcccc
Q psy17995 43 TGNCYECNQPLR 54 (120)
Q Consensus 43 ~~~CP~C~~~~~ 54 (120)
+..|+.|++.+.
T Consensus 2 p~~C~~C~k~f~ 13 (32)
T 2kfq_A 2 AFACPACPKRFM 13 (32)
T ss_dssp CSSSSSSCTTHH
T ss_pred CCCCCCCCcccC
Confidence 357999998774
No 201
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=33.74 E-value=16 Score=23.40 Aligned_cols=45 Identities=18% Similarity=0.559 Sum_probs=27.1
Q ss_pred cCcccCCCcccCCCCcccc-cccCCccchhHHHHHhhc---CCCCCCCCCc
Q psy17995 5 ECPRCKTTKYRKPTLKLMV-NICGHPLCEGCVDLLFLK---GTGNCYECNQ 51 (120)
Q Consensus 5 ~CpiC~~~~~~~p~~~~~~-~~CGH~fC~~Ci~~~~~~---~~~~CP~C~~ 51 (120)
.|.+|.. .-.++. .++. ..|...|-..|+...+.. +...||.|+.
T Consensus 63 ~C~vC~~-~~~~~~-~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 63 TCSSCRD-QGKNAD-NMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CBTTTCC-CCCTTC-CCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred ccccccC-cCCCcc-ceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 4667763 212222 2333 479888889998765443 3467999874
No 202
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.71 E-value=21 Score=21.83 Aligned_cols=44 Identities=25% Similarity=0.590 Sum_probs=22.5
Q ss_pred ccCcccCCCcc--cCCCCcccccccCCccchhHHHHHhhc-CCCCCCCCCc
Q psy17995 4 QECPRCKTTKY--RKPTLKLMVNICGHPLCEGCVDLLFLK-GTGNCYECNQ 51 (120)
Q Consensus 4 ~~CpiC~~~~~--~~p~~~~~~~~CGH~fC~~Ci~~~~~~-~~~~CP~C~~ 51 (120)
-.|..|...+- .+. ..+-..|-|++|..|= .+.. +...|-+|.+
T Consensus 26 r~CarC~~~LG~l~~~--g~~C~~Ck~rVC~~Cr--v~~~~~~W~C~VC~k 72 (76)
T 2csz_A 26 RTCARCQESLGRLSPK--TNTCRGCNHLVCRDCR--IQESNGTWRCKVCSG 72 (76)
T ss_dssp CBCSSSCCBCSSSCTT--TSEETTTTEECCTTSE--EECSTTCEEEHHHHS
T ss_pred cchhhhCccccccccC--CCcCcccChhhccccc--ccCCCCCEEEeeCch
Confidence 36888875321 111 1112368888888883 2221 2345666644
No 203
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=33.63 E-value=21 Score=21.12 Aligned_cols=26 Identities=19% Similarity=0.583 Sum_probs=15.8
Q ss_pred ccCcccCCCcccCCCCcccccccCCccchh
Q psy17995 4 QECPRCKTTKYRKPTLKLMVNICGHPLCEG 33 (120)
Q Consensus 4 ~~CpiC~~~~~~~p~~~~~~~~CGH~fC~~ 33 (120)
..|..|...+-+-+ +.-.||..||..
T Consensus 16 ~rC~~C~kkvgl~~----f~CrCg~~FC~~ 41 (64)
T 1wfh_A 16 NRCTVCRKRVGLTG----FMCRCGTTFCGS 41 (64)
T ss_dssp CCCTTTCCCCCTTC----EECSSSCEECTT
T ss_pred CcChhhCCccCccC----EEeecCCEeccc
Confidence 46888885332222 122699999865
No 204
>2c6a_A Ubiquitin-protein ligase E3 MDM2; zinc finger, human MDM2, phosphorylation, alternative splicing, metal-binding, nuclear protein, proto- oncogene; NMR {Homo sapiens} SCOP: g.41.11.1 PDB: 2c6b_A
Probab=32.90 E-value=15 Score=20.32 Aligned_cols=9 Identities=22% Similarity=0.715 Sum_probs=5.4
Q ss_pred CccCcccCC
Q psy17995 3 DQECPRCKT 11 (120)
Q Consensus 3 ~~~CpiC~~ 11 (120)
..+|+-|.+
T Consensus 13 ~WkC~~C~~ 21 (46)
T 2c6a_A 13 YWKCTSCNE 21 (46)
T ss_dssp CEECTTTCC
T ss_pred eEecccccc
Confidence 346777773
No 205
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=32.68 E-value=42 Score=19.89 Aligned_cols=41 Identities=20% Similarity=0.443 Sum_probs=23.5
Q ss_pred ccCcccCCCcccCCCCcccccccCCccchhHHHHHhhcCCCCCCCCCccccCCCC
Q psy17995 4 QECPRCKTTKYRKPTLKLMVNICGHPLCEGCVDLLFLKGTGNCYECNQPLRRGNF 58 (120)
Q Consensus 4 ~~CpiC~~~~~~~p~~~~~~~~CGH~fC~~Ci~~~~~~~~~~CP~C~~~~~~~~~ 58 (120)
..|+.|...++ .. ++..-|..|-..| ..|-.|+..|....|
T Consensus 26 ~~C~~C~~~I~-~~----~~~a~~~~~H~~C---------F~C~~C~~~L~~~~~ 66 (89)
T 1x64_A 26 PLCDKCGSGIV-GA----VVKARDKYRHPEC---------FVCADCNLNLKQKGY 66 (89)
T ss_dssp CBCTTTCCBCC-SC----CEESSSCEECTTT---------CCCSSSCCCTTTSCC
T ss_pred CCcccCCCEec-cc----EEEECCceECccC---------CEecCCCCCCCCCCe
Confidence 35778876443 21 1333444444444 578899998875443
No 206
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=32.53 E-value=20 Score=17.29 Aligned_cols=13 Identities=15% Similarity=0.611 Sum_probs=10.4
Q ss_pred CCCCCCCCccccC
Q psy17995 43 TGNCYECNQPLRR 55 (120)
Q Consensus 43 ~~~CP~C~~~~~~ 55 (120)
+..|+.|++.|..
T Consensus 11 ~~~C~~C~k~f~~ 23 (42)
T 2ytb_A 11 PYRCDQCGKAFSQ 23 (42)
T ss_dssp SBCCTTTTCCBSS
T ss_pred CeeCCCccchhCC
Confidence 4689999998764
No 207
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=32.45 E-value=13 Score=16.14 Aligned_cols=12 Identities=17% Similarity=0.512 Sum_probs=8.9
Q ss_pred CCCCCCCCcccc
Q psy17995 43 TGNCYECNQPLR 54 (120)
Q Consensus 43 ~~~CP~C~~~~~ 54 (120)
+..|+.|+..|.
T Consensus 3 ~~~C~~C~~~f~ 14 (30)
T 2m0d_A 3 PYQCDYCGRSFS 14 (30)
T ss_dssp CEECTTTCCEES
T ss_pred CccCCCCCcccC
Confidence 356899988765
No 208
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=32.41 E-value=23 Score=20.14 Aligned_cols=43 Identities=21% Similarity=0.566 Sum_probs=29.6
Q ss_pred CccCcccCCCcccCCCCcccc-cccCCccchhHHHHHhhc---CCCCCCCCCc
Q psy17995 3 DQECPRCKTTKYRKPTLKLMV-NICGHPLCEGCVDLLFLK---GTGNCYECNQ 51 (120)
Q Consensus 3 ~~~CpiC~~~~~~~p~~~~~~-~~CGH~fC~~Ci~~~~~~---~~~~CP~C~~ 51 (120)
+..|.+|... . .|+. ..|...|-..|+...+.. +...||.|..
T Consensus 11 ~~~C~vC~~~---g---~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 11 QDYCEVCQQG---G---EIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp CSSCTTTSCC---S---SEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCccCCCC---C---cEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 4579999842 1 2233 379999999999875442 3468999964
No 209
>1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4 tetrahedral Zn+2, antiparallel beta strand and alpha helix, NESG project; NMR {Escherichia coli} SCOP: g.39.1.9
Probab=32.37 E-value=12 Score=22.46 Aligned_cols=11 Identities=27% Similarity=0.670 Sum_probs=9.4
Q ss_pred CCCCCCCcccc
Q psy17995 44 GNCYECNQPLR 54 (120)
Q Consensus 44 ~~CP~C~~~~~ 54 (120)
..||+|++++.
T Consensus 10 ~~CP~Cgkp~~ 20 (68)
T 1lv3_A 10 VNCPTCGKTVV 20 (68)
T ss_dssp EECTTTCCEEE
T ss_pred CcCCCCCCccc
Confidence 57999999885
No 210
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=32.28 E-value=23 Score=30.36 Aligned_cols=52 Identities=25% Similarity=0.465 Sum_probs=33.3
Q ss_pred CCccCcccCCCcccCCCCcc----cc--cccCCcc--------------------chhHHHHHhhc-------CCCCCCC
Q psy17995 2 DDQECPRCKTTKYRKPTLKL----MV--NICGHPL--------------------CEGCVDLLFLK-------GTGNCYE 48 (120)
Q Consensus 2 d~~~CpiC~~~~~~~p~~~~----~~--~~CGH~f--------------------C~~Ci~~~~~~-------~~~~CP~ 48 (120)
|--.|+-|+.. +.||.-+- ++ |.||=+| |..|-..+-.. .+..||.
T Consensus 105 D~a~C~~Cl~e-~~dp~~rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfhAqp~aC~~ 183 (772)
T 4g9i_A 105 DIAICDDCLRE-LFDPTNKRYMYPFIVCTNCGPRFTIIEDLPYDRENTTMKEFPMCDFCRSEYEDPLNRRYHAEPTACPV 183 (772)
T ss_dssp CCCCCHHHHHH-HSSTTSTTTTCTTCCCTTSSCCGGGCCSSSCCGGGSGGGGSCCCHHHHHHHHCSSSTTTTCTTCCCTT
T ss_pred chhhhHHHHHH-hcCCCCCccCCccccCCCCCchhhhhhcCCCCCCCCcCCCCCCChhHHHHhCCCCCCCCcCCCCCCcc
Confidence 33578888864 35554332 13 3677654 99999887542 2457999
Q ss_pred CCcccc
Q psy17995 49 CNQPLR 54 (120)
Q Consensus 49 C~~~~~ 54 (120)
||=.+.
T Consensus 184 CGP~l~ 189 (772)
T 4g9i_A 184 CGPSYR 189 (772)
T ss_dssp TSCCEE
T ss_pred CCceEE
Confidence 997663
No 211
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.06 E-value=40 Score=20.10 Aligned_cols=42 Identities=24% Similarity=0.513 Sum_probs=22.7
Q ss_pred ccCcccCCCcccCCCCcccccccCCccchhHHHHHhhcCCCCCCCCCccccCCCC
Q psy17995 4 QECPRCKTTKYRKPTLKLMVNICGHPLCEGCVDLLFLKGTGNCYECNQPLRRGNF 58 (120)
Q Consensus 4 ~~CpiC~~~~~~~p~~~~~~~~CGH~fC~~Ci~~~~~~~~~~CP~C~~~~~~~~~ 58 (120)
..|+.|...++... .+..-|..+-..| ..|-.|+.+|....|
T Consensus 16 ~~C~~C~~~I~~~~----~v~a~~~~~H~~C---------F~C~~C~~~L~~~~~ 57 (91)
T 2d8y_A 16 ETCVECQKTVYPME----RLLANQQVFHISC---------FRCSYCNNKLSLGTY 57 (91)
T ss_dssp CBCTTTCCBCCTTS----EEECSSSEEETTT---------CBCTTTCCBCCTTTC
T ss_pred CcCccCCCccCCce----eEEECCCEECCCC---------CeeCCCCCCCCCCCc
Confidence 36777876443211 1233444444444 567788887765443
No 212
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.02 E-value=39 Score=18.88 Aligned_cols=41 Identities=20% Similarity=0.529 Sum_probs=20.2
Q ss_pred ccCcccCCCcccCCCCcccccccCCccchhHHHHHhhcCCCCCCCCCccccCCCC
Q psy17995 4 QECPRCKTTKYRKPTLKLMVNICGHPLCEGCVDLLFLKGTGNCYECNQPLRRGNF 58 (120)
Q Consensus 4 ~~CpiC~~~~~~~p~~~~~~~~CGH~fC~~Ci~~~~~~~~~~CP~C~~~~~~~~~ 58 (120)
..|+.|...++ .. .+..=|..+...|+ .|..|+.+|....|
T Consensus 6 ~~C~~C~~~I~-~~----~~~a~~~~~H~~CF---------~C~~C~~~L~~~~~ 46 (69)
T 2cur_A 6 SGCVKCNKAIT-SG----GITYQDQPWHADCF---------VCVTCSKKLAGQRF 46 (69)
T ss_dssp CCCSSSCCCCC-TT----CEEETTEEECTTTT---------BCTTTCCBCTTSCE
T ss_pred CCCcccCCEeC-cc----eEEECccccccCcC---------EECCCCCCCCCCcc
Confidence 36777776443 21 12333444444553 25556666654444
No 213
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=31.96 E-value=10 Score=26.87 Aligned_cols=44 Identities=20% Similarity=0.378 Sum_probs=29.8
Q ss_pred ccCcccCCCcccCCCCcccc-cccCCccchhHHHHHhhc---CCCCCCCCCccc
Q psy17995 4 QECPRCKTTKYRKPTLKLMV-NICGHPLCEGCVDLLFLK---GTGNCYECNQPL 53 (120)
Q Consensus 4 ~~CpiC~~~~~~~p~~~~~~-~~CGH~fC~~Ci~~~~~~---~~~~CP~C~~~~ 53 (120)
..|.+|... - .++. ..|...|...|+...+.. +...||.|...-
T Consensus 8 ~~C~~C~~~--g----~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 8 DWCAVCQNG--G----DLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp SSBTTTCCC--E----EEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCC--C----ceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 469999842 1 1233 379999999998765443 347899998744
No 214
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=31.78 E-value=22 Score=17.35 Aligned_cols=13 Identities=31% Similarity=0.713 Sum_probs=10.4
Q ss_pred CCCCCCCCccccC
Q psy17995 43 TGNCYECNQPLRR 55 (120)
Q Consensus 43 ~~~CP~C~~~~~~ 55 (120)
+..|+.|++.|..
T Consensus 12 ~~~C~~C~k~f~~ 24 (44)
T 2en7_A 12 PYVCNECGKAFRS 24 (44)
T ss_dssp SSCCTTTCCCCSS
T ss_pred CeECCCCCCccCC
Confidence 4689999998764
No 215
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.68 E-value=40 Score=20.07 Aligned_cols=13 Identities=23% Similarity=0.669 Sum_probs=6.3
Q ss_pred CCCCCccccCCCC
Q psy17995 46 CYECNQPLRRGNF 58 (120)
Q Consensus 46 CP~C~~~~~~~~~ 58 (120)
|..|+.+|....|
T Consensus 54 C~~C~~~L~~~~f 66 (90)
T 2dar_A 54 CAHCKNTMAYIGF 66 (90)
T ss_dssp CSSSCCBCSSSCB
T ss_pred cCCCCCCCCCCEe
Confidence 4455555544443
No 216
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.58 E-value=23 Score=17.16 Aligned_cols=13 Identities=23% Similarity=0.503 Sum_probs=10.4
Q ss_pred CCCCCCCCccccC
Q psy17995 43 TGNCYECNQPLRR 55 (120)
Q Consensus 43 ~~~CP~C~~~~~~ 55 (120)
+..|+.|++.|..
T Consensus 11 ~~~C~~C~k~f~~ 23 (42)
T 2eos_A 11 PYPCEICGTRFRH 23 (42)
T ss_dssp CBCCSSSCCCBSS
T ss_pred CEECCCCCCccCC
Confidence 4689999998764
No 217
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=31.53 E-value=21 Score=17.19 Aligned_cols=13 Identities=23% Similarity=0.654 Sum_probs=10.3
Q ss_pred CCCCCCCCccccC
Q psy17995 43 TGNCYECNQPLRR 55 (120)
Q Consensus 43 ~~~CP~C~~~~~~ 55 (120)
+..|+.|++.|..
T Consensus 10 ~~~C~~C~k~f~~ 22 (42)
T 2yte_A 10 PYSCAECKETFSD 22 (42)
T ss_dssp SCBCTTTCCBCSS
T ss_pred CeECCCCCCccCC
Confidence 4689999988764
No 218
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=31.26 E-value=13 Score=17.08 Aligned_cols=13 Identities=15% Similarity=0.217 Sum_probs=10.0
Q ss_pred CCCCCCCCccccC
Q psy17995 43 TGNCYECNQPLRR 55 (120)
Q Consensus 43 ~~~CP~C~~~~~~ 55 (120)
+..|+.|++.|..
T Consensus 7 ~~~C~~C~k~f~~ 19 (35)
T 2elx_A 7 GYVCALCLKKFVS 19 (35)
T ss_dssp SEECSSSCCEESS
T ss_pred CeECCCCcchhCC
Confidence 4679999988754
No 219
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.23 E-value=41 Score=19.31 Aligned_cols=14 Identities=29% Similarity=0.574 Sum_probs=10.1
Q ss_pred CCCCCCCccccCCC
Q psy17995 44 GNCYECNQPLRRGN 57 (120)
Q Consensus 44 ~~CP~C~~~~~~~~ 57 (120)
..|..|+.+|....
T Consensus 42 F~C~~C~~~L~~~~ 55 (80)
T 2cuq_A 42 LVCTGCQTPLAGQQ 55 (80)
T ss_dssp CBCSSSCCBCTTCC
T ss_pred CCcccCCCcCCCCe
Confidence 57888998886443
No 220
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=31.10 E-value=23 Score=30.34 Aligned_cols=51 Identities=24% Similarity=0.621 Sum_probs=33.5
Q ss_pred CCccCcccCCCcccCCCCcc----cc--cccCCc--------------------cchhHHHHHhhc-------CCCCCCC
Q psy17995 2 DDQECPRCKTTKYRKPTLKL----MV--NICGHP--------------------LCEGCVDLLFLK-------GTGNCYE 48 (120)
Q Consensus 2 d~~~CpiC~~~~~~~p~~~~----~~--~~CGH~--------------------fC~~Ci~~~~~~-------~~~~CP~ 48 (120)
|--.|+-|+.. +.||.-+- ++ |.||=+ +|..|...+-.. .+..||.
T Consensus 110 D~a~C~~Cl~e-~~dp~~Rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~~RRfhAqp~aC~~ 188 (761)
T 3vth_A 110 DMGVCEDCLRE-LKDPKDRRYRYPFINCTNCGPRFSIIEDIPYDRAKTSMKVFPMCEKCSREYHDPHDRRFHAQPVACFD 188 (761)
T ss_dssp CBCCCHHHHHH-HTCTTSTTTTCTTCCBTTBBCSGGGBCSSSCCGGGBGGGGSCCCHHHHHHHTCTTSTTTTCTTCCCTT
T ss_pred CccccHHHHHH-hcCCCccccCCCcccCCCCCcchhhhccCCCCCCCCccccCCCCHHHHHHhcCcccccccCCCCcCCc
Confidence 34579999864 45554432 23 368844 599999887542 2457999
Q ss_pred CCccc
Q psy17995 49 CNQPL 53 (120)
Q Consensus 49 C~~~~ 53 (120)
||=.+
T Consensus 189 CGP~l 193 (761)
T 3vth_A 189 CGPSL 193 (761)
T ss_dssp TSCCE
T ss_pred cCCee
Confidence 98766
No 221
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=30.70 E-value=23 Score=17.60 Aligned_cols=14 Identities=14% Similarity=0.439 Sum_probs=10.9
Q ss_pred CCCCCCCCccccCC
Q psy17995 43 TGNCYECNQPLRRG 56 (120)
Q Consensus 43 ~~~CP~C~~~~~~~ 56 (120)
+..|+.|++.|...
T Consensus 12 ~~~C~~C~k~F~~~ 25 (46)
T 2enh_A 12 PYECDVCRKAFSHH 25 (46)
T ss_dssp SCBCTTTCCBCSSS
T ss_pred CcCCCCcCchhCCH
Confidence 46899999988643
No 222
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=30.54 E-value=16 Score=21.43 Aligned_cols=42 Identities=24% Similarity=0.495 Sum_probs=21.9
Q ss_pred ccCcccCCCcccCCCCcccccccCCccchhHHHHHhhcCCCCCCCCCccccCCCC
Q psy17995 4 QECPRCKTTKYRKPTLKLMVNICGHPLCEGCVDLLFLKGTGNCYECNQPLRRGNF 58 (120)
Q Consensus 4 ~~CpiC~~~~~~~p~~~~~~~~CGH~fC~~Ci~~~~~~~~~~CP~C~~~~~~~~~ 58 (120)
..|+.|...++... .+..-|..+-..| ..|..|+.+|....|
T Consensus 8 ~~C~~C~~~I~~~~----~~~a~~~~~H~~C---------F~C~~C~~~L~~~~~ 49 (81)
T 1a7i_A 8 NKCGACGRTVYHAE----EVQCDGRSFHRCC---------FLCMVCRKNLDSTTV 49 (81)
T ss_dssp CBCSSSCCBCSSTT----EEEETTEEEESSS---------EECSSSCCEECSSCC
T ss_pred CcCcCcCccccCce----eEEeCCccccccc---------CccCCCCCCCCCCCe
Confidence 36888886443222 1233344333333 467778877765443
No 223
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.48 E-value=38 Score=19.66 Aligned_cols=39 Identities=23% Similarity=0.503 Sum_probs=22.3
Q ss_pred cCcccCCCcccCCCCcccccccCCccchhHHHHHhhcCCCCCCCCCccccCCC
Q psy17995 5 ECPRCKTTKYRKPTLKLMVNICGHPLCEGCVDLLFLKGTGNCYECNQPLRRGN 57 (120)
Q Consensus 5 ~CpiC~~~~~~~p~~~~~~~~CGH~fC~~Ci~~~~~~~~~~CP~C~~~~~~~~ 57 (120)
.|+.|...++ .. ++..-|..+-..| ..|-.|+++|....
T Consensus 17 ~C~~C~~~I~-~~----~v~a~~~~wH~~C---------F~C~~C~~~L~~~~ 55 (81)
T 1v6g_A 17 RCFSCDQFIE-GE----VVSALGKTYHPDC---------FVCAVCRLPFPPGD 55 (81)
T ss_dssp BCTTTCCBCC-SC----CEEETTEEECTTT---------SSCSSSCCCCCSSS
T ss_pred cCccccCEec-cc----eEEECCceeCccC---------CccccCCCCCCCCC
Confidence 6777775443 21 2333344444444 57888998886543
No 224
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.34 E-value=14 Score=17.29 Aligned_cols=13 Identities=23% Similarity=0.429 Sum_probs=10.1
Q ss_pred CCCCCCCCccccC
Q psy17995 43 TGNCYECNQPLRR 55 (120)
Q Consensus 43 ~~~CP~C~~~~~~ 55 (120)
+..|+.|++.|..
T Consensus 9 ~~~C~~C~k~f~~ 21 (36)
T 2elq_A 9 PFKCSLCEYATRS 21 (36)
T ss_dssp SEECSSSSCEESC
T ss_pred CccCCCCCchhCC
Confidence 4679999988753
No 225
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=30.27 E-value=19 Score=20.20 Aligned_cols=13 Identities=38% Similarity=0.736 Sum_probs=11.1
Q ss_pred CCCccCcccCCCcc
Q psy17995 1 MDDQECPRCKTTKY 14 (120)
Q Consensus 1 ~d~~~CpiC~~~~~ 14 (120)
|..+.|++|. .+|
T Consensus 1 m~~y~C~~CG-yvY 13 (52)
T 1e8j_A 1 MDIYVCTVCG-YEY 13 (52)
T ss_dssp CCCEECSSSC-CCC
T ss_pred CCcEEeCCCC-eEE
Confidence 8899999999 465
No 226
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.25 E-value=14 Score=17.14 Aligned_cols=13 Identities=15% Similarity=0.332 Sum_probs=10.0
Q ss_pred CCCCCCCCccccC
Q psy17995 43 TGNCYECNQPLRR 55 (120)
Q Consensus 43 ~~~CP~C~~~~~~ 55 (120)
+..|+.|++.|..
T Consensus 9 ~~~C~~C~k~f~~ 21 (36)
T 2elt_A 9 PYKCPQCSYASAI 21 (36)
T ss_dssp SEECSSSSCEESS
T ss_pred CCCCCCCCcccCC
Confidence 4679999987753
No 227
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.24 E-value=13 Score=17.32 Aligned_cols=13 Identities=23% Similarity=0.444 Sum_probs=10.0
Q ss_pred CCCCCCCCccccC
Q psy17995 43 TGNCYECNQPLRR 55 (120)
Q Consensus 43 ~~~CP~C~~~~~~ 55 (120)
+..|+.|++.|..
T Consensus 9 ~~~C~~C~k~f~~ 21 (36)
T 2els_A 9 IFTCEYCNKVFKF 21 (36)
T ss_dssp CEECTTTCCEESS
T ss_pred CEECCCCCceeCC
Confidence 4679999988753
No 228
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=29.94 E-value=26 Score=17.25 Aligned_cols=13 Identities=15% Similarity=0.595 Sum_probs=10.4
Q ss_pred CCCCCCCCccccC
Q psy17995 43 TGNCYECNQPLRR 55 (120)
Q Consensus 43 ~~~CP~C~~~~~~ 55 (120)
+..|+.|++.|..
T Consensus 12 ~~~C~~C~k~f~~ 24 (46)
T 2eov_A 12 PYKCSDCGKSFTW 24 (46)
T ss_dssp SCBCSSSCCBCSS
T ss_pred CccCCccChhhCC
Confidence 4789999998764
No 229
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=29.78 E-value=24 Score=17.44 Aligned_cols=13 Identities=23% Similarity=0.654 Sum_probs=10.4
Q ss_pred CCCCCCCCccccC
Q psy17995 43 TGNCYECNQPLRR 55 (120)
Q Consensus 43 ~~~CP~C~~~~~~ 55 (120)
+..|+.|++.|..
T Consensus 12 ~~~C~~C~k~F~~ 24 (46)
T 2enf_A 12 PYKCNECGKVFTQ 24 (46)
T ss_dssp SCBCSSSCCBCSS
T ss_pred CeECCCCCcccCC
Confidence 4689999998764
No 230
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=29.50 E-value=26 Score=17.33 Aligned_cols=13 Identities=23% Similarity=0.654 Sum_probs=10.5
Q ss_pred CCCCCCCCccccC
Q psy17995 43 TGNCYECNQPLRR 55 (120)
Q Consensus 43 ~~~CP~C~~~~~~ 55 (120)
+..|+.|++.|..
T Consensus 12 ~~~C~~C~k~F~~ 24 (46)
T 2yti_A 12 PYKCNECGKVFTQ 24 (46)
T ss_dssp TTCCSSSCCCCSS
T ss_pred CeECCCCCcccCC
Confidence 4689999998764
No 231
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=29.21 E-value=15 Score=25.88 Aligned_cols=49 Identities=22% Similarity=0.508 Sum_probs=30.2
Q ss_pred ccCcccCCCcccCCCC--cccc-cccCCccchhHHHHH------hhc----CCCCCCCCCccc
Q psy17995 4 QECPRCKTTKYRKPTL--KLMV-NICGHPLCEGCVDLL------FLK----GTGNCYECNQPL 53 (120)
Q Consensus 4 ~~CpiC~~~~~~~p~~--~~~~-~~CGH~fC~~Ci~~~------~~~----~~~~CP~C~~~~ 53 (120)
..||+|.. .|.+... .|+. ..|..-|-..|+... +.. ....||.|+..-
T Consensus 3 ~~CpiC~k-~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~ 64 (183)
T 3lqh_A 3 NFCPLCDK-CYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH 64 (183)
T ss_dssp CBCTTTCC-BCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSS
T ss_pred CcCCCCcC-ccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCC
Confidence 35999995 7665532 2333 378877777776432 111 147899998743
No 232
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.94 E-value=42 Score=19.37 Aligned_cols=37 Identities=16% Similarity=0.365 Sum_probs=21.2
Q ss_pred cCcccCCCcccCCCCcccccccCCccchhHHHHHhhcCCCCCCCCCccccC
Q psy17995 5 ECPRCKTTKYRKPTLKLMVNICGHPLCEGCVDLLFLKGTGNCYECNQPLRR 55 (120)
Q Consensus 5 ~CpiC~~~~~~~p~~~~~~~~CGH~fC~~Ci~~~~~~~~~~CP~C~~~~~~ 55 (120)
.|+.|...++ .. ++..-|..+-..| ..|..|+.+|..
T Consensus 17 ~C~~C~~~I~-~~----~~~a~~~~~H~~C---------F~C~~C~~~L~~ 53 (81)
T 1x6a_A 17 FCHGCSLLMT-GP----FMVAGEFKYHPEC---------FACMSCKVIIED 53 (81)
T ss_dssp BCTTTCCBCC-SC----CBCCTTCCBCTTS---------CBCTTTCCBCCT
T ss_pred cCccCCCCcC-ce----EEEECCceecccc---------CCccCCCCccCC
Confidence 5777775443 22 1233344443333 578889998864
No 233
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=28.61 E-value=28 Score=17.21 Aligned_cols=13 Identities=23% Similarity=0.705 Sum_probs=10.5
Q ss_pred CCCCCCCCccccC
Q psy17995 43 TGNCYECNQPLRR 55 (120)
Q Consensus 43 ~~~CP~C~~~~~~ 55 (120)
+..|+.|++.|..
T Consensus 12 ~~~C~~C~k~f~~ 24 (46)
T 2eq2_A 12 PYQCNECGKAFSQ 24 (46)
T ss_dssp SSSCCSSCCCCSS
T ss_pred CeECCCCCcccCC
Confidence 4789999998764
No 234
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=28.37 E-value=27 Score=17.39 Aligned_cols=13 Identities=23% Similarity=0.595 Sum_probs=10.4
Q ss_pred CCCCCCCCccccC
Q psy17995 43 TGNCYECNQPLRR 55 (120)
Q Consensus 43 ~~~CP~C~~~~~~ 55 (120)
+..|+.|++.|..
T Consensus 12 ~~~C~~C~k~f~~ 24 (46)
T 2eon_A 12 PYKCQVCGKAFRV 24 (46)
T ss_dssp SCBCSSSCCBCSS
T ss_pred ccCCCCCCcccCc
Confidence 4689999998764
No 235
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=28.25 E-value=28 Score=21.15 Aligned_cols=26 Identities=19% Similarity=0.488 Sum_probs=14.7
Q ss_pred ccCcccCCCcccCCCCcccccccCCccchh
Q psy17995 4 QECPRCKTTKYRKPTLKLMVNICGHPLCEG 33 (120)
Q Consensus 4 ~~CpiC~~~~~~~p~~~~~~~~CGH~fC~~ 33 (120)
..|..|...+-.-+ +.-.||..||..
T Consensus 26 ~RC~~C~kkvgL~~----f~CrCg~~FCs~ 51 (74)
T 1wfp_A 26 TRCLSCNKKVGVTG----FKCRCGSTFCGT 51 (74)
T ss_dssp CBCSSSCCBCTTTC----EECTTSCEECTT
T ss_pred ccchhhcCcccccc----eEeccCCEeccc
Confidence 46778875332222 122688888764
No 236
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.11 E-value=35 Score=19.81 Aligned_cols=15 Identities=27% Similarity=0.461 Sum_probs=10.8
Q ss_pred CCCCCCCccccCCCC
Q psy17995 44 GNCYECNQPLRRGNF 58 (120)
Q Consensus 44 ~~CP~C~~~~~~~~~ 58 (120)
..|..|+.+|....|
T Consensus 42 F~C~~C~~~L~~~~f 56 (81)
T 2dlo_A 42 FTCVVCHRGLDGIPF 56 (81)
T ss_dssp CBCSSSCCBCTTSCE
T ss_pred cCcccCCCccCCCee
Confidence 578889988864433
No 237
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=28.01 E-value=27 Score=17.29 Aligned_cols=13 Identities=23% Similarity=0.611 Sum_probs=10.4
Q ss_pred CCCCCCCCccccC
Q psy17995 43 TGNCYECNQPLRR 55 (120)
Q Consensus 43 ~~~CP~C~~~~~~ 55 (120)
+..|+.|++.|..
T Consensus 12 ~~~C~~C~k~f~~ 24 (46)
T 2yth_A 12 PFQCEECGKRFTQ 24 (46)
T ss_dssp SBCCSSSCCCBSS
T ss_pred CCCCCCCCcccCC
Confidence 4689999998764
No 238
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=27.96 E-value=28 Score=17.22 Aligned_cols=13 Identities=23% Similarity=0.628 Sum_probs=10.4
Q ss_pred CCCCCCCCccccC
Q psy17995 43 TGNCYECNQPLRR 55 (120)
Q Consensus 43 ~~~CP~C~~~~~~ 55 (120)
+..|+.|++.|..
T Consensus 12 ~~~C~~C~k~f~~ 24 (46)
T 2eoh_A 12 PYECKECRKTFIQ 24 (46)
T ss_dssp SCCCSSSCCCCSS
T ss_pred CcCCCCcCchhCC
Confidence 4689999998764
No 239
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=27.92 E-value=29 Score=17.16 Aligned_cols=13 Identities=15% Similarity=0.368 Sum_probs=10.4
Q ss_pred CCCCCCCCccccC
Q psy17995 43 TGNCYECNQPLRR 55 (120)
Q Consensus 43 ~~~CP~C~~~~~~ 55 (120)
+..|+.|++.|..
T Consensus 12 ~~~C~~C~k~f~~ 24 (46)
T 2eoq_A 12 PFKCDICGKSFCG 24 (46)
T ss_dssp SCCCSSSCCCCSS
T ss_pred CcCCCcCCchhCC
Confidence 4789999998764
No 240
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.91 E-value=17 Score=16.97 Aligned_cols=13 Identities=15% Similarity=0.559 Sum_probs=10.0
Q ss_pred CCCCCCCCccccC
Q psy17995 43 TGNCYECNQPLRR 55 (120)
Q Consensus 43 ~~~CP~C~~~~~~ 55 (120)
+..|+.|++.|..
T Consensus 9 ~~~C~~C~k~f~~ 21 (36)
T 2elv_A 9 LYDCHICERKFKN 21 (36)
T ss_dssp CEECSSSCCEESS
T ss_pred CeECCCCCCccCC
Confidence 4679999987753
No 241
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=27.88 E-value=26 Score=21.27 Aligned_cols=26 Identities=19% Similarity=0.410 Sum_probs=14.4
Q ss_pred ccCcccCCCcccCCCCcccccccCCccchh
Q psy17995 4 QECPRCKTTKYRKPTLKLMVNICGHPLCEG 33 (120)
Q Consensus 4 ~~CpiC~~~~~~~p~~~~~~~~CGH~fC~~ 33 (120)
..|..|...+-+-+ +.-.||..||..
T Consensus 26 nRC~~CrKkvgL~g----f~CrCg~~FCs~ 51 (74)
T 1wfl_A 26 NRCFMCRKKVGLTG----FDCRCGNLFCGL 51 (74)
T ss_dssp TBCSSSCCBCGGGC----EECTTSCEECSS
T ss_pred CcChhhCCcccccC----eecCCCCEechh
Confidence 35788875322222 122588888754
No 242
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.87 E-value=61 Score=18.69 Aligned_cols=14 Identities=21% Similarity=0.524 Sum_probs=10.1
Q ss_pred CCCCCCCccccCCC
Q psy17995 44 GNCYECNQPLRRGN 57 (120)
Q Consensus 44 ~~CP~C~~~~~~~~ 57 (120)
..|..|+.+|....
T Consensus 44 F~C~~C~~~L~~~~ 57 (82)
T 2ehe_A 44 FRCCRCQRSLADEP 57 (82)
T ss_dssp SBCTTTCCBCSSCC
T ss_pred CeecCCCCccCCCc
Confidence 56888888886443
No 243
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=27.78 E-value=28 Score=22.28 Aligned_cols=45 Identities=20% Similarity=0.383 Sum_probs=25.7
Q ss_pred cCcccCCCcccCC---C-Ccccc-cccCCccchhHHHHH------hhcCCCCCCCC
Q psy17995 5 ECPRCKTTKYRKP---T-LKLMV-NICGHPLCEGCVDLL------FLKGTGNCYEC 49 (120)
Q Consensus 5 ~CpiC~~~~~~~p---~-~~~~~-~~CGH~fC~~Ci~~~------~~~~~~~CP~C 49 (120)
.|.+|+..-..|. . -.|+. ..||..|-.+|+... ...+...||.|
T Consensus 3 ~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C 58 (114)
T 2kwj_A 3 YCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIEC 58 (114)
T ss_dssp CCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCHHHHHHHHHTTCCCGGG
T ss_pred cCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCChhhhhhccCCCccCcccc
Confidence 6999985432221 0 12222 479999988998642 22345566655
No 244
>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.76 E-value=29 Score=20.01 Aligned_cols=34 Identities=15% Similarity=0.082 Sum_probs=21.3
Q ss_pred ccCCccchhHHHHHhhc---CCCCCCCCCccccCCCC
Q psy17995 25 ICGHPLCEGCVDLLFLK---GTGNCYECNQPLRRGNF 58 (120)
Q Consensus 25 ~CGH~fC~~Ci~~~~~~---~~~~CP~C~~~~~~~~~ 58 (120)
.||-.|-.+=+...... .+..||.|++.+.+.++
T Consensus 22 ~C~~~~~~~~L~~H~~~c~~~~~~C~~C~~~~~~~~l 58 (75)
T 2d9k_A 22 HCDLELSILKLKEHEDYCGARTELCGNCGRNVLVKDL 58 (75)
T ss_dssp SSCCEECHHHHHHHHHHHHHCEEECSSSCCEEETTGG
T ss_pred ccChHhhHHHHHHHHhHcCCCceEcccCCCcCcHHHH
Confidence 46666755555554421 34679999987765543
No 245
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=27.74 E-value=27 Score=19.83 Aligned_cols=11 Identities=27% Similarity=0.455 Sum_probs=5.9
Q ss_pred CCCCCCCcccc
Q psy17995 44 GNCYECNQPLR 54 (120)
Q Consensus 44 ~~CP~C~~~~~ 54 (120)
..|..||..+.
T Consensus 31 ~vC~~CGlVl~ 41 (58)
T 1dl6_A 31 MICPECGLVVG 41 (58)
T ss_dssp EECTTTCCEEC
T ss_pred EEeCCCCCEEe
Confidence 45666665543
No 246
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=27.70 E-value=31 Score=20.64 Aligned_cols=16 Identities=25% Similarity=0.603 Sum_probs=11.6
Q ss_pred CCCCCCCCccccCCCCc
Q psy17995 43 TGNCYECNQPLRRGNFR 59 (120)
Q Consensus 43 ~~~CP~C~~~~~~~~~~ 59 (120)
+..|| ||+.+.-+..+
T Consensus 21 T~~C~-CG~~~~~~k~r 36 (71)
T 1gh9_A 21 TRKCV-CGRTVNVKDRR 36 (71)
T ss_dssp EEEET-TTEEEECCSSS
T ss_pred EEECC-CCCeeeeceEE
Confidence 36799 99988765544
No 247
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=27.66 E-value=30 Score=17.00 Aligned_cols=13 Identities=23% Similarity=0.708 Sum_probs=10.4
Q ss_pred CCCCCCCCccccC
Q psy17995 43 TGNCYECNQPLRR 55 (120)
Q Consensus 43 ~~~CP~C~~~~~~ 55 (120)
+..|+.|++.|..
T Consensus 12 ~~~C~~C~k~f~~ 24 (46)
T 2ytr_A 12 PYKCNECGKAFSQ 24 (46)
T ss_dssp TTCCTTTCCCCSS
T ss_pred CcCCCCCCCccCC
Confidence 4689999998764
No 248
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.64 E-value=15 Score=17.19 Aligned_cols=13 Identities=15% Similarity=0.549 Sum_probs=10.1
Q ss_pred CCCCCCCCccccC
Q psy17995 43 TGNCYECNQPLRR 55 (120)
Q Consensus 43 ~~~CP~C~~~~~~ 55 (120)
+..|+.|++.|..
T Consensus 9 ~~~C~~C~k~f~~ 21 (37)
T 2elo_A 9 SYSCPVCEKSFSE 21 (37)
T ss_dssp CCEETTTTEECSS
T ss_pred CcCCCCCCCccCC
Confidence 4679999988754
No 249
>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.58 E-value=29 Score=17.01 Aligned_cols=13 Identities=38% Similarity=0.905 Sum_probs=10.4
Q ss_pred CCCCCCCCccccC
Q psy17995 43 TGNCYECNQPLRR 55 (120)
Q Consensus 43 ~~~CP~C~~~~~~ 55 (120)
+..|+.|++.|..
T Consensus 12 ~~~C~~C~k~f~~ 24 (44)
T 2eou_A 12 TSECQECGKIFRH 24 (44)
T ss_dssp CCCCTTTCCCCSS
T ss_pred CeECCCCCcccCC
Confidence 4689999998764
No 250
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=27.58 E-value=30 Score=17.04 Aligned_cols=13 Identities=15% Similarity=0.651 Sum_probs=10.5
Q ss_pred CCCCCCCCccccC
Q psy17995 43 TGNCYECNQPLRR 55 (120)
Q Consensus 43 ~~~CP~C~~~~~~ 55 (120)
+..|+.|++.|..
T Consensus 12 ~~~C~~C~k~f~~ 24 (46)
T 2ep1_A 12 PYECSDCGKSFIK 24 (46)
T ss_dssp SSCCSSSCCCCSS
T ss_pred CcCCCCCCchhCC
Confidence 4789999998764
No 251
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=27.57 E-value=29 Score=17.19 Aligned_cols=13 Identities=15% Similarity=0.496 Sum_probs=10.4
Q ss_pred CCCCCCCCccccC
Q psy17995 43 TGNCYECNQPLRR 55 (120)
Q Consensus 43 ~~~CP~C~~~~~~ 55 (120)
+..|+.|++.|..
T Consensus 12 ~~~C~~C~k~f~~ 24 (46)
T 2em6_A 12 CYKCDVCGKEFSQ 24 (46)
T ss_dssp CCBCSSSCCBCSS
T ss_pred CeECCCCCcccCC
Confidence 4689999998764
No 252
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=27.55 E-value=14 Score=21.06 Aligned_cols=48 Identities=17% Similarity=0.411 Sum_probs=28.7
Q ss_pred CccCcccCCCcccCCCCcccc-cccCCccchhHHHHHhh----cCCCCCCCCCcc
Q psy17995 3 DQECPRCKTTKYRKPTLKLMV-NICGHPLCEGCVDLLFL----KGTGNCYECNQP 52 (120)
Q Consensus 3 ~~~CpiC~~~~~~~p~~~~~~-~~CGH~fC~~Ci~~~~~----~~~~~CP~C~~~ 52 (120)
...||+|.. .+ ++...|++ ..|..=|-..|+..... .....||.|...
T Consensus 6 ~~~C~~C~~-~~-~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 6 SGQCGACGE-SY-AADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp CCCCSSSCC-CC-CSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCC-cc-CCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 457999995 54 33333333 26777777778754322 134679999653
No 253
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=27.50 E-value=17 Score=16.73 Aligned_cols=13 Identities=15% Similarity=0.265 Sum_probs=10.1
Q ss_pred CCCCCCCCccccC
Q psy17995 43 TGNCYECNQPLRR 55 (120)
Q Consensus 43 ~~~CP~C~~~~~~ 55 (120)
+..|+.|++.|..
T Consensus 7 ~~~C~~C~k~f~~ 19 (35)
T 1srk_A 7 PFVCRICLSAFTT 19 (35)
T ss_dssp CEECSSSCCEESS
T ss_pred CeeCCCCCcccCC
Confidence 4679999988764
No 254
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=27.46 E-value=31 Score=17.00 Aligned_cols=13 Identities=23% Similarity=0.672 Sum_probs=10.5
Q ss_pred CCCCCCCCccccC
Q psy17995 43 TGNCYECNQPLRR 55 (120)
Q Consensus 43 ~~~CP~C~~~~~~ 55 (120)
+..|+.|++.|..
T Consensus 12 ~~~C~~C~k~F~~ 24 (47)
T 2epx_A 12 PYECIECGKAFIQ 24 (47)
T ss_dssp SBCCSSSCCCBSS
T ss_pred CEECCccCchhCC
Confidence 4789999998764
No 255
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.42 E-value=53 Score=18.96 Aligned_cols=38 Identities=21% Similarity=0.483 Sum_probs=23.3
Q ss_pred ccCcccCCCcccCCCCcccccccCCccchhHHHHHhhcCCCCCCCCCccccC
Q psy17995 4 QECPRCKTTKYRKPTLKLMVNICGHPLCEGCVDLLFLKGTGNCYECNQPLRR 55 (120)
Q Consensus 4 ~~CpiC~~~~~~~p~~~~~~~~CGH~fC~~Ci~~~~~~~~~~CP~C~~~~~~ 55 (120)
..|+.|...++ .. ++..-|..|-..| ..|-.|+.+|..
T Consensus 16 ~~C~~C~~~I~-~~----~~~a~~~~~H~~C---------F~C~~C~~~L~~ 53 (79)
T 1x62_A 16 PMCDKCGTGIV-GV----FVKLRDRHRHPEC---------YVCTDCGTNLKQ 53 (79)
T ss_dssp CCCSSSCCCCC-SS----CEECSSCEECTTT---------TSCSSSCCCHHH
T ss_pred CccccCCCCcc-Cc----EEEECcceeCcCc---------CeeCCCCCCCCC
Confidence 47899986554 22 2344455554444 568889888753
No 256
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=27.36 E-value=29 Score=17.13 Aligned_cols=13 Identities=31% Similarity=0.779 Sum_probs=10.4
Q ss_pred CCCCCCCCccccC
Q psy17995 43 TGNCYECNQPLRR 55 (120)
Q Consensus 43 ~~~CP~C~~~~~~ 55 (120)
+..|+.|++.|..
T Consensus 12 ~~~C~~C~k~f~~ 24 (46)
T 2eq1_A 12 PYKCNECGKAFRA 24 (46)
T ss_dssp CCCCTTTTCCCSS
T ss_pred CeECCcCChhhCC
Confidence 5789999988754
No 257
>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B
Probab=27.35 E-value=17 Score=18.40 Aligned_cols=13 Identities=15% Similarity=0.393 Sum_probs=10.6
Q ss_pred CCCCCCCCccccC
Q psy17995 43 TGNCYECNQPLRR 55 (120)
Q Consensus 43 ~~~CP~C~~~~~~ 55 (120)
+..|+.|++.|..
T Consensus 8 p~~C~~CgK~F~~ 20 (36)
T 1fv5_A 8 RFMCLPCGIAFSS 20 (36)
T ss_dssp CCEETTTTEECSC
T ss_pred CeECCCCCCccCC
Confidence 5789999998864
No 258
>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C, DNA polymerase III; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A*
Probab=27.34 E-value=22 Score=31.58 Aligned_cols=15 Identities=20% Similarity=0.638 Sum_probs=11.7
Q ss_pred CCCCCCCCccccCCC
Q psy17995 43 TGNCYECNQPLRRGN 57 (120)
Q Consensus 43 ~~~CP~C~~~~~~~~ 57 (120)
...||.|++.+.+..
T Consensus 527 ~k~cp~cg~~~~~dg 541 (1041)
T 3f2b_A 527 DKNCPRCGTKYKKDG 541 (1041)
T ss_dssp CCBCTTTCCBCEEEC
T ss_pred cccCccccccccccC
Confidence 468999999886653
No 259
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=27.13 E-value=28 Score=17.23 Aligned_cols=13 Identities=23% Similarity=0.496 Sum_probs=10.4
Q ss_pred CCCCCCCCccccC
Q psy17995 43 TGNCYECNQPLRR 55 (120)
Q Consensus 43 ~~~CP~C~~~~~~ 55 (120)
+..|+.|++.|..
T Consensus 12 ~~~C~~C~k~f~~ 24 (46)
T 2emg_A 12 PFICSECGKVFTH 24 (46)
T ss_dssp SCBCTTTCCBCSS
T ss_pred CEECCccCcccCC
Confidence 4689999998764
No 260
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.07 E-value=43 Score=19.24 Aligned_cols=15 Identities=27% Similarity=0.616 Sum_probs=11.0
Q ss_pred CCCCCCCccccCCCC
Q psy17995 44 GNCYECNQPLRRGNF 58 (120)
Q Consensus 44 ~~CP~C~~~~~~~~~ 58 (120)
..|..|+.+|....+
T Consensus 42 F~C~~C~~~L~~~~~ 56 (80)
T 1x3h_A 42 FVCGDCFTSFSTGSF 56 (80)
T ss_dssp CBCSSSCCBSCSSCC
T ss_pred CChhhCCCCCCCCcE
Confidence 678889988875443
No 261
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=26.82 E-value=5.2 Score=22.80 Aligned_cols=46 Identities=20% Similarity=0.580 Sum_probs=29.8
Q ss_pred CCccCcccCCCcccCCCCcccc-cccCCccchhHHHHHhhc---CCCCCCCCCccc
Q psy17995 2 DDQECPRCKTTKYRKPTLKLMV-NICGHPLCEGCVDLLFLK---GTGNCYECNQPL 53 (120)
Q Consensus 2 d~~~CpiC~~~~~~~p~~~~~~-~~CGH~fC~~Ci~~~~~~---~~~~CP~C~~~~ 53 (120)
.+..|.+|... . .|+. ..|...|-..|+...+.. +...||.|....
T Consensus 4 ~~~~C~vC~~~---g---~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 53 (60)
T 2puy_A 4 HEDFCSVCRKS---G---QLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQM 53 (60)
T ss_dssp CCSSCTTTCCC---S---SCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHH
T ss_pred CCCCCcCCCCC---C---cEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChh
Confidence 45679999952 2 1232 379988999998854432 345788886543
No 262
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=26.74 E-value=39 Score=19.87 Aligned_cols=26 Identities=19% Similarity=0.482 Sum_probs=15.2
Q ss_pred ccCcccCCCcccCCCCcccccccCCccchh
Q psy17995 4 QECPRCKTTKYRKPTLKLMVNICGHPLCEG 33 (120)
Q Consensus 4 ~~CpiC~~~~~~~p~~~~~~~~CGH~fC~~ 33 (120)
..|..|...+-+-+ +.--||..||..
T Consensus 16 ~rC~~C~kkvgl~~----f~CrCg~~FC~~ 41 (64)
T 1wg2_A 16 NRCFSCNKKVGVMG----FKCKCGSTFCGS 41 (64)
T ss_dssp CSCTTTCCCCTTSC----EECTTSCEECSS
T ss_pred CcChhhCCcccccC----eEeecCCEeccc
Confidence 46888885322222 122788888864
No 263
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=26.73 E-value=31 Score=17.07 Aligned_cols=13 Identities=31% Similarity=0.690 Sum_probs=10.4
Q ss_pred CCCCCCCCccccC
Q psy17995 43 TGNCYECNQPLRR 55 (120)
Q Consensus 43 ~~~CP~C~~~~~~ 55 (120)
+..|+.|++.|..
T Consensus 12 ~~~C~~C~k~f~~ 24 (46)
T 2emz_A 12 PFKCNECGKGFGR 24 (46)
T ss_dssp SCCCSSSCCCCSS
T ss_pred CeECCCCCcccCC
Confidence 4689999998764
No 264
>1fzc_A Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: h.1.8.1 PDB: 1fzb_A* 1fza_A* 1fze_A* 1fzf_A* 1fzg_A* 1n86_A* 2h43_A* 2hlo_A* 2hod_A* 2hpc_A* 2q9i_A* 2xnx_A 2xny_A 2z4e_A* 3e1i_A* 1n8e_A 2oyh_A* 1ltj_A* 1lt9_A* 1re4_A* ...
Probab=26.63 E-value=54 Score=20.41 Aligned_cols=48 Identities=19% Similarity=0.313 Sum_probs=33.7
Q ss_pred cccccchhHHHHHHHHHHhhhhhhcccCCc-cCHHHHHHHHHHHHHHHH
Q psy17995 60 VQLFDDSSVEKEVEIRKKLLKDYNKVEEDF-NSLAEYNDYLEEIEEIVF 107 (120)
Q Consensus 60 ~~~f~d~~~~~e~~~rk~~~k~~~~~~~~~-~~l~~y~~yle~~E~~i~ 107 (120)
.++.+-.-+|-+|+|.-|.+|.=|...-.+ -++..|++.-.+.|.++.
T Consensus 32 ~Q~vemkRLEVDIDIKiRsCKGSCar~~~~~vd~~~Y~~~qKql~q~~a 80 (87)
T 1fzc_A 32 AQLVDMKRLEVDIDIKIRSCRGSCSRALAREVDLKDYEDQQKQLEQVIA 80 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTTBSCCCCCCCCTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhhhhhccchHHHHHHHHhcHHhHHHHHHHHHHHhh
Confidence 344444556667777667888877666667 789999988888776653
No 265
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}
Probab=26.55 E-value=32 Score=16.94 Aligned_cols=13 Identities=31% Similarity=0.654 Sum_probs=10.4
Q ss_pred CCCCCCCCccccC
Q psy17995 43 TGNCYECNQPLRR 55 (120)
Q Consensus 43 ~~~CP~C~~~~~~ 55 (120)
+..|+.|++.|..
T Consensus 12 ~~~C~~C~k~F~~ 24 (46)
T 2em0_A 12 TWKCRECDMCFSQ 24 (46)
T ss_dssp CCCCSSSCCCCSS
T ss_pred CeECCCCCcccCC
Confidence 4689999998764
No 266
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A
Probab=26.52 E-value=30 Score=17.14 Aligned_cols=13 Identities=23% Similarity=0.692 Sum_probs=10.5
Q ss_pred CCCCCCCCccccC
Q psy17995 43 TGNCYECNQPLRR 55 (120)
Q Consensus 43 ~~~CP~C~~~~~~ 55 (120)
+..|+.|++.|..
T Consensus 12 ~~~C~~C~k~F~~ 24 (46)
T 2emk_A 12 PYECKECGKAFSQ 24 (46)
T ss_dssp SCBCSSSCCBCSC
T ss_pred ceECCCCCchhCC
Confidence 4789999998864
No 267
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=26.51 E-value=35 Score=18.98 Aligned_cols=43 Identities=33% Similarity=0.574 Sum_probs=22.1
Q ss_pred ccCcccCCCcccCCCCcccccccCCccchhHHHHHhhcCCCCCCCCCccccCCCC
Q psy17995 4 QECPRCKTTKYRKPTLKLMVNICGHPLCEGCVDLLFLKGTGNCYECNQPLRRGNF 58 (120)
Q Consensus 4 ~~CpiC~~~~~~~p~~~~~~~~CGH~fC~~Ci~~~~~~~~~~CP~C~~~~~~~~~ 58 (120)
..|+.|...++... . ++..=|..+-..|. .|-.|+.+|....+
T Consensus 12 ~~C~~C~~~i~~~e-~--~~~~~~~~~H~~CF---------~C~~C~~~L~~~~~ 54 (72)
T 3f6q_B 12 ATCERCKGGFAPAE-K--IVNSNGELYHEQCF---------VCAQCFQQFPEGLF 54 (72)
T ss_dssp CBCTTTCCBCCTTC-E--EEEETTEEEETTTS---------SCTTTCCCCGGGCC
T ss_pred ccchhcCccccCCc-e--EEEeCcCeeCcCCC---------cccCCCCCCCCCCe
Confidence 46888986543221 1 12233444444554 35567777655444
No 268
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=25.94 E-value=31 Score=17.09 Aligned_cols=13 Identities=23% Similarity=0.646 Sum_probs=10.4
Q ss_pred CCCCCCCCccccC
Q psy17995 43 TGNCYECNQPLRR 55 (120)
Q Consensus 43 ~~~CP~C~~~~~~ 55 (120)
+..|+.|++.|..
T Consensus 12 ~~~C~~C~k~F~~ 24 (46)
T 2en9_A 12 LFKCNECKKTFTQ 24 (46)
T ss_dssp CCBCTTTCCBCSS
T ss_pred CEECCccCcccCC
Confidence 4689999998764
No 269
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=25.94 E-value=31 Score=17.04 Aligned_cols=13 Identities=23% Similarity=0.646 Sum_probs=10.4
Q ss_pred CCCCCCCCccccC
Q psy17995 43 TGNCYECNQPLRR 55 (120)
Q Consensus 43 ~~~CP~C~~~~~~ 55 (120)
+..|+.|++.|..
T Consensus 12 ~~~C~~C~k~F~~ 24 (46)
T 2elz_A 12 PYKCEDCGKGYNR 24 (46)
T ss_dssp SCBCSSSCCBCSS
T ss_pred CeeCcccCchhCC
Confidence 4689999998764
No 270
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=25.84 E-value=30 Score=17.02 Aligned_cols=13 Identities=23% Similarity=0.649 Sum_probs=10.4
Q ss_pred CCCCCCCCccccC
Q psy17995 43 TGNCYECNQPLRR 55 (120)
Q Consensus 43 ~~~CP~C~~~~~~ 55 (120)
+..|+.|++.|..
T Consensus 12 ~~~C~~C~k~f~~ 24 (46)
T 2eop_A 12 PHECRECGKSFSF 24 (46)
T ss_dssp SCBCTTTCCBCSS
T ss_pred CeeCCCCCchhCC
Confidence 4689999998764
No 271
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.82 E-value=33 Score=17.01 Aligned_cols=13 Identities=15% Similarity=0.539 Sum_probs=10.4
Q ss_pred CCCCCCCCccccC
Q psy17995 43 TGNCYECNQPLRR 55 (120)
Q Consensus 43 ~~~CP~C~~~~~~ 55 (120)
+..|+.|++.|..
T Consensus 12 ~~~C~~C~k~F~~ 24 (46)
T 2eom_A 12 GHRCSDCGKFFLQ 24 (46)
T ss_dssp SCCCSSSCCCCSS
T ss_pred CcCCCCCCCeeCC
Confidence 4689999998764
No 272
>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.81 E-value=31 Score=19.24 Aligned_cols=12 Identities=33% Similarity=0.730 Sum_probs=10.0
Q ss_pred CCCCCCCCcccc
Q psy17995 43 TGNCYECNQPLR 54 (120)
Q Consensus 43 ~~~CP~C~~~~~ 54 (120)
...||.|+..++
T Consensus 12 ~~~CPrCn~~f~ 23 (49)
T 2e72_A 12 RKICPRCNAQFR 23 (49)
T ss_dssp CCCCTTTCCCCS
T ss_pred ceeCCccccccc
Confidence 468999999886
No 273
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.81 E-value=38 Score=19.01 Aligned_cols=42 Identities=29% Similarity=0.604 Sum_probs=20.3
Q ss_pred cCcccCCCcccCCCCcccccccCCccchhHHHHHhhcCCCCCCCCCccccCCCC
Q psy17995 5 ECPRCKTTKYRKPTLKLMVNICGHPLCEGCVDLLFLKGTGNCYECNQPLRRGNF 58 (120)
Q Consensus 5 ~CpiC~~~~~~~p~~~~~~~~CGH~fC~~Ci~~~~~~~~~~CP~C~~~~~~~~~ 58 (120)
.|+.|...++... . ++..=|..+-..|+ .|-.|+.+|....|
T Consensus 7 ~C~~C~~~I~~~~-~--~~~a~~~~~H~~CF---------~C~~C~~~L~~~~~ 48 (72)
T 1x4k_A 7 GCQECKKTIMPGT-R--KMEYKGSSWHETCF---------ICHRCQQPIGTKSF 48 (72)
T ss_dssp CBSSSCCCCCSSS-C--EEEETTEEEETTTT---------CCSSSCCCCCSSSE
T ss_pred CCccCCCcccCCc-e--EEEECcCeecccCC---------cccccCCccCCCcc
Confidence 5777775443211 1 12333444444553 25556666655544
No 274
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.80 E-value=20 Score=17.64 Aligned_cols=13 Identities=15% Similarity=0.595 Sum_probs=10.4
Q ss_pred CCCCCCCCccccC
Q psy17995 43 TGNCYECNQPLRR 55 (120)
Q Consensus 43 ~~~CP~C~~~~~~ 55 (120)
+..|+.|++.|..
T Consensus 12 ~~~C~~C~k~f~~ 24 (44)
T 2yu5_A 12 PFKCSKCDRVFTQ 24 (44)
T ss_dssp SEECSSSSCEESS
T ss_pred CeECCCCCchhCC
Confidence 4679999998864
No 275
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=25.74 E-value=22 Score=26.06 Aligned_cols=44 Identities=23% Similarity=0.520 Sum_probs=24.8
Q ss_pred cCcccCCCcccCCCCcccc-cccCCccchhHHHHHhhc---C-CCCCCCCCc
Q psy17995 5 ECPRCKTTKYRKPTLKLMV-NICGHPLCEGCVDLLFLK---G-TGNCYECNQ 51 (120)
Q Consensus 5 ~CpiC~~~~~~~p~~~~~~-~~CGH~fC~~Ci~~~~~~---~-~~~CP~C~~ 51 (120)
.|.+|... .++. .|+. ..|...|-..|+...+.. + ...||.|..
T Consensus 176 ~C~vC~~~--~~~~-~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 176 ACHLCGGR--QDPD-KQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp SCSSSCCC--CC---CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCcCCCCC--CCCC-CeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 57888742 2232 2232 378888888898865553 3 457999964
No 276
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.68 E-value=46 Score=19.49 Aligned_cols=38 Identities=18% Similarity=0.370 Sum_probs=21.5
Q ss_pred ccCcccCCCcccCCCCcccccccCCccchhHHHHHhhcCCCCCCCCCcccc
Q psy17995 4 QECPRCKTTKYRKPTLKLMVNICGHPLCEGCVDLLFLKGTGNCYECNQPLR 54 (120)
Q Consensus 4 ~~CpiC~~~~~~~p~~~~~~~~CGH~fC~~Ci~~~~~~~~~~CP~C~~~~~ 54 (120)
..|+.|...++... .+..=|..+-..| ..|..|+.+|.
T Consensus 16 ~~C~~C~~~I~~~~----~v~a~~~~wH~~C---------F~C~~C~~~L~ 53 (80)
T 2dj7_A 16 SHCAGCKEEIKHGQ----SLLALDKQWHVSC---------FKCQTCSVILT 53 (80)
T ss_dssp SCCTTTCCCCSSSC----CEEETTEEECTTT---------CBCSSSCCBCS
T ss_pred CCCcCcCCeeCCCe----EEEECCccccccc---------CCcCcCCCCcC
Confidence 46888886554222 1222243333333 67888998886
No 277
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=25.31 E-value=31 Score=17.00 Aligned_cols=13 Identities=23% Similarity=0.654 Sum_probs=10.4
Q ss_pred CCCCCCCCccccC
Q psy17995 43 TGNCYECNQPLRR 55 (120)
Q Consensus 43 ~~~CP~C~~~~~~ 55 (120)
+..|+.|++.|..
T Consensus 12 ~~~C~~C~k~F~~ 24 (46)
T 2ytn_A 12 PYKCNECGKVFTQ 24 (46)
T ss_dssp SCBCTTTCCBCSS
T ss_pred CeECCCCCCeeCC
Confidence 4689999998764
No 278
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=25.19 E-value=31 Score=16.93 Aligned_cols=13 Identities=38% Similarity=0.815 Sum_probs=10.4
Q ss_pred CCCCCCCCccccC
Q psy17995 43 TGNCYECNQPLRR 55 (120)
Q Consensus 43 ~~~CP~C~~~~~~ 55 (120)
+..|+.|++.|..
T Consensus 12 ~~~C~~C~k~f~~ 24 (46)
T 2eq4_A 12 LYNCKECGKSFSR 24 (46)
T ss_dssp CCCBTTTTBCCSC
T ss_pred CeECCCCCCccCc
Confidence 4689999998764
No 279
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.97 E-value=21 Score=17.77 Aligned_cols=13 Identities=15% Similarity=0.513 Sum_probs=10.4
Q ss_pred CCCCCCCCccccC
Q psy17995 43 TGNCYECNQPLRR 55 (120)
Q Consensus 43 ~~~CP~C~~~~~~ 55 (120)
+..|+.|++.|..
T Consensus 12 ~~~C~~C~k~f~~ 24 (46)
T 2eoy_A 12 CFKCNKCEKTFSC 24 (46)
T ss_dssp CEECSSSCCEESS
T ss_pred CEECcCCCCcCCC
Confidence 4679999998764
No 280
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=24.89 E-value=31 Score=22.24 Aligned_cols=13 Identities=15% Similarity=0.690 Sum_probs=10.9
Q ss_pred ccchhHHHHHhhc
Q psy17995 29 PLCEGCVDLLFLK 41 (120)
Q Consensus 29 ~fC~~Ci~~~~~~ 41 (120)
-||+.|+.+.+..
T Consensus 42 GFCRNCLskWy~~ 54 (105)
T 2o35_A 42 GFCRNCLSNWYRE 54 (105)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4999999998764
No 281
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Probab=24.88 E-value=21 Score=17.23 Aligned_cols=13 Identities=31% Similarity=0.792 Sum_probs=10.2
Q ss_pred CCCCCCCCccccC
Q psy17995 43 TGNCYECNQPLRR 55 (120)
Q Consensus 43 ~~~CP~C~~~~~~ 55 (120)
+..|+.|++.|..
T Consensus 10 ~~~C~~C~k~f~~ 22 (42)
T 2el5_A 10 PYECSECGKAFNR 22 (42)
T ss_dssp SEECSSSCCEESS
T ss_pred CccCCCcChhhCC
Confidence 4679999988764
No 282
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=24.81 E-value=32 Score=22.19 Aligned_cols=13 Identities=15% Similarity=0.764 Sum_probs=10.8
Q ss_pred ccchhHHHHHhhc
Q psy17995 29 PLCEGCVDLLFLK 41 (120)
Q Consensus 29 ~fC~~Ci~~~~~~ 41 (120)
-||..|+.+.+..
T Consensus 41 GFCRNCLskWy~~ 53 (104)
T 3fyb_A 41 DFCRNCLAKWLME 53 (104)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4999999998763
No 283
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.52 E-value=42 Score=19.23 Aligned_cols=41 Identities=17% Similarity=0.353 Sum_probs=24.1
Q ss_pred ccCcccCCCccc--CCCCcccccccCCccchhHHHHHhhcCCCCCCCCCccccCC
Q psy17995 4 QECPRCKTTKYR--KPTLKLMVNICGHPLCEGCVDLLFLKGTGNCYECNQPLRRG 56 (120)
Q Consensus 4 ~~CpiC~~~~~~--~p~~~~~~~~CGH~fC~~Ci~~~~~~~~~~CP~C~~~~~~~ 56 (120)
..|+.|...++. +.. ++..-|..+-..| ..|..|+.+|...
T Consensus 6 ~~C~~C~~~I~~~g~~~---~~~a~~~~wH~~C---------F~C~~C~~~L~~~ 48 (76)
T 1x68_A 6 SGCVACSKPISGLTGAK---FICFQDSQWHSEC---------FNCGKCSVSLVGK 48 (76)
T ss_dssp CCCTTTCCCCCTTTTCC---EEEETTEEEEGGG---------CBCTTTCCBCSSS
T ss_pred CCCccCCCcccCCCCce---eEEECCcccCccc---------CChhhCCCcCCCC
Confidence 468999875542 111 2334455554455 5788888888643
No 284
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.46 E-value=33 Score=16.89 Aligned_cols=13 Identities=15% Similarity=0.662 Sum_probs=10.4
Q ss_pred CCCCCCCCccccC
Q psy17995 43 TGNCYECNQPLRR 55 (120)
Q Consensus 43 ~~~CP~C~~~~~~ 55 (120)
+..|+.|++.|..
T Consensus 12 ~~~C~~C~k~f~~ 24 (46)
T 2epz_A 12 PFDCIDCGKAFSD 24 (46)
T ss_dssp SBCCTTTCCCBSS
T ss_pred CeECCCCCceeCC
Confidence 4689999998764
No 285
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.46 E-value=50 Score=19.04 Aligned_cols=44 Identities=23% Similarity=0.443 Sum_probs=25.9
Q ss_pred ccCcccCCCcccCCCCcccccccCCccchhHHHHHhhcCCCCCCCCCccccCCCCc
Q psy17995 4 QECPRCKTTKYRKPTLKLMVNICGHPLCEGCVDLLFLKGTGNCYECNQPLRRGNFR 59 (120)
Q Consensus 4 ~~CpiC~~~~~~~p~~~~~~~~CGH~fC~~Ci~~~~~~~~~~CP~C~~~~~~~~~~ 59 (120)
..|+.|...++... . ++..=|..+-..| ..|-.|+++|....|.
T Consensus 16 ~~C~~C~~~I~~~~-~--~~~a~~~~~H~~C---------F~C~~C~~~L~~~~~~ 59 (82)
T 1x63_A 16 PKCKGCFKAIVAGD-Q--NVEYKGTVWHKDC---------FTCSNCKQVIGTGSFF 59 (82)
T ss_dssp CBCSSSCCBCCSSS-C--EEECSSCEEETTT---------CCCSSSCCCCTTSCEE
T ss_pred CcCccCCcccccCc-e--EEEECcccccccc---------CchhhCCCccCCCccE
Confidence 36888886443211 1 2333455554444 5788888888766654
No 286
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Probab=24.35 E-value=21 Score=17.20 Aligned_cols=13 Identities=15% Similarity=0.498 Sum_probs=10.2
Q ss_pred CCCCCCCCccccC
Q psy17995 43 TGNCYECNQPLRR 55 (120)
Q Consensus 43 ~~~CP~C~~~~~~ 55 (120)
+..|+.|++.|..
T Consensus 11 ~~~C~~C~k~f~~ 23 (42)
T 2epc_A 11 PYLCGQCGKSFTQ 23 (42)
T ss_dssp CEECSSSCCEESS
T ss_pred CeECCCCCcccCC
Confidence 4679999988754
No 287
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=24.30 E-value=27 Score=19.49 Aligned_cols=42 Identities=19% Similarity=0.327 Sum_probs=24.3
Q ss_pred cCcccCCCcccCCCCcccccccCCccc--hhHHHHHhhcCCCCCCCCCccccCCCC
Q psy17995 5 ECPRCKTTKYRKPTLKLMVNICGHPLC--EGCVDLLFLKGTGNCYECNQPLRRGNF 58 (120)
Q Consensus 5 ~CpiC~~~~~~~p~~~~~~~~CGH~fC--~~Ci~~~~~~~~~~CP~C~~~~~~~~~ 58 (120)
.|+.|...++.. .. .++.-|..+- ..| ..|-.|+.+|....|
T Consensus 4 ~C~~C~~~I~~~-~~--~v~a~~~~wH~~~~C---------F~C~~C~~~L~~~~f 47 (65)
T 2iyb_E 4 VCQGCHNAIDPE-VQ--RVTYNNFSWHASTEC---------FLCSCCSKCLIGQKF 47 (65)
T ss_dssp ECTTTSSEECTT-SC--EEEETTEEEETTTTT---------SBCTTTCCBCTTSCC
T ss_pred CCcCCCCeeccC-ce--EEEECCCccCCCCCC---------EECCCCCCcCCCCce
Confidence 688998654321 11 2344455544 344 678889988865443
No 288
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.28 E-value=35 Score=16.86 Aligned_cols=13 Identities=23% Similarity=0.641 Sum_probs=10.4
Q ss_pred CCCCCCCCccccC
Q psy17995 43 TGNCYECNQPLRR 55 (120)
Q Consensus 43 ~~~CP~C~~~~~~ 55 (120)
+..|+.|++.|..
T Consensus 12 ~~~C~~C~k~f~~ 24 (46)
T 2ytq_A 12 PYGCSECGKAFSS 24 (46)
T ss_dssp SCBCSSSCCBCSC
T ss_pred CcCCCccChhhCC
Confidence 4689999998764
No 289
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.25 E-value=34 Score=16.96 Aligned_cols=13 Identities=23% Similarity=0.672 Sum_probs=10.4
Q ss_pred CCCCCCCCccccC
Q psy17995 43 TGNCYECNQPLRR 55 (120)
Q Consensus 43 ~~~CP~C~~~~~~ 55 (120)
+..|+.|++.|..
T Consensus 12 ~~~C~~C~k~f~~ 24 (46)
T 2ytm_A 12 PYKCMECGKAFGD 24 (46)
T ss_dssp SSSBTTTTBCCSS
T ss_pred CcCCCCCCchhCC
Confidence 4689999998764
No 290
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.95 E-value=22 Score=17.58 Aligned_cols=14 Identities=21% Similarity=0.546 Sum_probs=10.7
Q ss_pred CCCCCCCCccccCC
Q psy17995 43 TGNCYECNQPLRRG 56 (120)
Q Consensus 43 ~~~CP~C~~~~~~~ 56 (120)
+..|+.|++.|...
T Consensus 12 ~~~C~~C~k~F~~~ 25 (46)
T 2epw_A 12 PCKCTECGKAFCWK 25 (46)
T ss_dssp SEECSSSCCEESSS
T ss_pred CeeCCCCCCccCCH
Confidence 46799999988643
No 291
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.81 E-value=38 Score=16.69 Aligned_cols=13 Identities=23% Similarity=0.631 Sum_probs=10.4
Q ss_pred CCCCCCCCccccC
Q psy17995 43 TGNCYECNQPLRR 55 (120)
Q Consensus 43 ~~~CP~C~~~~~~ 55 (120)
+..|+.|++.|..
T Consensus 12 ~~~C~~C~k~f~~ 24 (46)
T 2ytt_A 12 PYQCSECGKSFSG 24 (46)
T ss_dssp TTCCSSSCCCCSS
T ss_pred CeeCCCCCcccCC
Confidence 4689999998764
No 292
>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.64 E-value=38 Score=16.49 Aligned_cols=13 Identities=23% Similarity=0.478 Sum_probs=10.4
Q ss_pred CCCCCCCCccccC
Q psy17995 43 TGNCYECNQPLRR 55 (120)
Q Consensus 43 ~~~CP~C~~~~~~ 55 (120)
+..|+.|++.|..
T Consensus 10 ~~~C~~C~k~f~~ 22 (43)
T 2yrm_A 10 AFFCNECDCRFSE 22 (43)
T ss_dssp CBCCSSSCCCBSS
T ss_pred CEECCCCCCeeCC
Confidence 4689999998764
No 293
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=23.61 E-value=86 Score=18.67 Aligned_cols=12 Identities=33% Similarity=0.730 Sum_probs=7.6
Q ss_pred CCCCCCCCcccc
Q psy17995 43 TGNCYECNQPLR 54 (120)
Q Consensus 43 ~~~CP~C~~~~~ 54 (120)
+..|++|++.|.
T Consensus 62 ~~~C~~Cgk~F~ 73 (96)
T 2ctd_A 62 MFTCHHCGKQLR 73 (96)
T ss_dssp CCCCSSSCCCCS
T ss_pred CeECCCCCCeeC
Confidence 456777776664
No 294
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.50 E-value=22 Score=17.10 Aligned_cols=13 Identities=31% Similarity=0.828 Sum_probs=10.1
Q ss_pred CCCCCCCCccccC
Q psy17995 43 TGNCYECNQPLRR 55 (120)
Q Consensus 43 ~~~CP~C~~~~~~ 55 (120)
+..|+.|++.|..
T Consensus 10 ~~~C~~C~k~f~~ 22 (41)
T 2ept_A 10 VYECQECGKSFRQ 22 (41)
T ss_dssp CEECSSSCCEESS
T ss_pred CeECCCCCCCcCC
Confidence 4679999988754
No 295
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=23.19 E-value=8.5 Score=23.79 Aligned_cols=51 Identities=14% Similarity=0.328 Sum_probs=31.8
Q ss_pred CccCcccCCCcccCCCCcccc-cccCCccchhHHHHHhh-------cCCCCCCCCCcccc
Q psy17995 3 DQECPRCKTTKYRKPTLKLMV-NICGHPLCEGCVDLLFL-------KGTGNCYECNQPLR 54 (120)
Q Consensus 3 ~~~CpiC~~~~~~~p~~~~~~-~~CGH~fC~~Ci~~~~~-------~~~~~CP~C~~~~~ 54 (120)
+..|.+|.. ....+.-.++. ..|...|-..|+...+. .+...|+.|.....
T Consensus 16 ~~~C~vC~~-~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~ 74 (88)
T 1wev_A 16 GLACVVCRQ-MTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMK 74 (88)
T ss_dssp CCSCSSSCC-CCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHC
T ss_pred CCcCCCCCC-CCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhh
Confidence 347999995 22211122333 37988888889876543 24578999976544
No 296
>3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B30; helix-turn-helix, Zn-binding protein, DNA-binding, transcrip transcription regulation; HET: PE4; 1.70A {Escherichia coli k-12} PDB: 3hi2_A
Probab=23.18 E-value=15 Score=21.92 Aligned_cols=10 Identities=30% Similarity=0.577 Sum_probs=6.8
Q ss_pred CCCCCCCCcc
Q psy17995 43 TGNCYECNQP 52 (120)
Q Consensus 43 ~~~CP~C~~~ 52 (120)
.+.||.|+..
T Consensus 2 ~m~Cp~Cg~~ 11 (78)
T 3ga8_A 2 HMKCPVCHQG 11 (78)
T ss_dssp -CBCTTTSSS
T ss_pred ceECCCCCCC
Confidence 3678888764
No 297
>2k5r_A Uncharacterized protein XF2673; solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Xylella fastidiosa TEMECULA1}
Probab=23.08 E-value=29 Score=22.06 Aligned_cols=12 Identities=8% Similarity=0.122 Sum_probs=9.1
Q ss_pred CCCccCcccCCC
Q psy17995 1 MDDQECPRCKTT 12 (120)
Q Consensus 1 ~d~~~CpiC~~~ 12 (120)
|+-+.||+|+..
T Consensus 6 LdILaCP~cK~p 17 (97)
T 2k5r_A 6 LHLLCSPDTRQP 17 (97)
T ss_dssp CSSCCCCTTSSC
T ss_pred hhheECCCCCCc
Confidence 455789999963
No 298
>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.07 E-value=15 Score=17.44 Aligned_cols=13 Identities=15% Similarity=0.291 Sum_probs=10.0
Q ss_pred CCCCCCCCccccC
Q psy17995 43 TGNCYECNQPLRR 55 (120)
Q Consensus 43 ~~~CP~C~~~~~~ 55 (120)
+..|+.|++.|..
T Consensus 9 ~~~C~~C~k~f~~ 21 (37)
T 2elm_A 9 LYYCSQCHYSSIT 21 (37)
T ss_dssp EEECSSSSCEEEC
T ss_pred CeECCCCCcccCC
Confidence 4679999987753
No 299
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=22.96 E-value=30 Score=23.40 Aligned_cols=25 Identities=32% Similarity=0.852 Sum_probs=14.1
Q ss_pred ccCcccCCC-cccCCCCccccc-ccCCcc
Q psy17995 4 QECPRCKTT-KYRKPTLKLMVN-ICGHPL 30 (120)
Q Consensus 4 ~~CpiC~~~-~~~~p~~~~~~~-~CGH~f 30 (120)
-.||.|... .|.+.. +++- .|||-.
T Consensus 28 P~CP~C~seytYeDg~--l~vCPeC~hEW 54 (138)
T 2akl_A 28 PPCPQCNSEYTYEDGA--LLVCPECAHEW 54 (138)
T ss_dssp CCCTTTCCCCCEECSS--SEEETTTTEEE
T ss_pred CCCCCCCCcceEecCC--eEECCcccccc
Confidence 479999853 234432 2343 677753
No 300
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A
Probab=22.81 E-value=22 Score=16.99 Aligned_cols=13 Identities=23% Similarity=0.603 Sum_probs=9.9
Q ss_pred CCCCCCCCccccC
Q psy17995 43 TGNCYECNQPLRR 55 (120)
Q Consensus 43 ~~~CP~C~~~~~~ 55 (120)
+..|+.|++.|..
T Consensus 6 ~~~C~~C~k~f~~ 18 (39)
T 1njq_A 6 SYTCSFCKREFRS 18 (39)
T ss_dssp SEECTTTCCEESS
T ss_pred ceECCCCCcccCC
Confidence 4679999987753
No 301
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.64 E-value=24 Score=17.47 Aligned_cols=13 Identities=23% Similarity=0.483 Sum_probs=10.4
Q ss_pred CCCCCCCCccccC
Q psy17995 43 TGNCYECNQPLRR 55 (120)
Q Consensus 43 ~~~CP~C~~~~~~ 55 (120)
+..|+.|++.|..
T Consensus 12 ~~~C~~C~k~F~~ 24 (46)
T 2en3_A 12 PFQCKECGMNFSW 24 (46)
T ss_dssp SEECSSSCCEESS
T ss_pred CeeCcccChhhCC
Confidence 4679999998864
No 302
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=22.58 E-value=28 Score=22.14 Aligned_cols=10 Identities=30% Similarity=0.577 Sum_probs=6.7
Q ss_pred CCCCCCCCcc
Q psy17995 43 TGNCYECNQP 52 (120)
Q Consensus 43 ~~~CP~C~~~ 52 (120)
.+.||.|+..
T Consensus 2 ~M~Cp~Cg~~ 11 (133)
T 3o9x_A 2 HMKCPVCHQG 11 (133)
T ss_dssp CCBCTTTSSS
T ss_pred CcCCCcCCCC
Confidence 3578888764
No 303
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.52 E-value=21 Score=17.47 Aligned_cols=13 Identities=31% Similarity=0.761 Sum_probs=10.3
Q ss_pred CCCCCCCCccccC
Q psy17995 43 TGNCYECNQPLRR 55 (120)
Q Consensus 43 ~~~CP~C~~~~~~ 55 (120)
+..|+.|++.|..
T Consensus 12 ~~~C~~C~k~f~~ 24 (44)
T 2eoj_A 12 PYECCECGKVFSR 24 (44)
T ss_dssp SCEETTTTEECSS
T ss_pred CeeCCCCCCccCC
Confidence 4689999988764
No 304
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=22.44 E-value=45 Score=17.25 Aligned_cols=12 Identities=8% Similarity=0.010 Sum_probs=9.8
Q ss_pred CCCCCCCCcccc
Q psy17995 43 TGNCYECNQPLR 54 (120)
Q Consensus 43 ~~~CP~C~~~~~ 54 (120)
+..|++|++.|.
T Consensus 41 ~~~C~~C~k~F~ 52 (54)
T 2eps_A 41 PHKCQVWVSGPS 52 (54)
T ss_dssp CCCSSSSCCSSC
T ss_pred CccCCCCCCCCC
Confidence 468999998775
No 305
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.37 E-value=25 Score=17.43 Aligned_cols=13 Identities=23% Similarity=0.654 Sum_probs=10.4
Q ss_pred CCCCCCCCccccC
Q psy17995 43 TGNCYECNQPLRR 55 (120)
Q Consensus 43 ~~~CP~C~~~~~~ 55 (120)
+..|+.|++.|..
T Consensus 12 ~~~C~~C~k~f~~ 24 (46)
T 2yu8_A 12 PYKCNECGKVFTQ 24 (46)
T ss_dssp SEECSSSCCEESS
T ss_pred CeECCcCCchhCC
Confidence 4679999998864
No 306
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=22.13 E-value=46 Score=17.94 Aligned_cols=14 Identities=21% Similarity=0.434 Sum_probs=11.0
Q ss_pred CCCCCCCCccccCC
Q psy17995 43 TGNCYECNQPLRRG 56 (120)
Q Consensus 43 ~~~CP~C~~~~~~~ 56 (120)
+..|+.|++.|...
T Consensus 39 ~~~C~~C~k~f~~~ 52 (62)
T 1vd4_A 39 TFRCTFCHTEVEED 52 (62)
T ss_dssp EEBCSSSCCBCEEC
T ss_pred CEECCCCCCccccC
Confidence 46899999988644
No 307
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.93 E-value=24 Score=17.47 Aligned_cols=14 Identities=21% Similarity=0.510 Sum_probs=10.8
Q ss_pred CCCCCCCCccccCC
Q psy17995 43 TGNCYECNQPLRRG 56 (120)
Q Consensus 43 ~~~CP~C~~~~~~~ 56 (120)
+..|+.|++.|...
T Consensus 12 ~~~C~~C~k~f~~~ 25 (46)
T 2ytg_A 12 PFKCGECGKSYNQR 25 (46)
T ss_dssp SEECTTTCCEESSS
T ss_pred CeECCCCCcccCCH
Confidence 46799999988643
No 308
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.86 E-value=24 Score=17.40 Aligned_cols=13 Identities=23% Similarity=0.562 Sum_probs=10.2
Q ss_pred CCCCCCCCccccC
Q psy17995 43 TGNCYECNQPLRR 55 (120)
Q Consensus 43 ~~~CP~C~~~~~~ 55 (120)
+..|+.|++.|..
T Consensus 12 ~~~C~~C~k~f~~ 24 (46)
T 2yts_A 12 PYICNECGKSFIQ 24 (46)
T ss_dssp SEECSSSCCEESS
T ss_pred CEECCCCChhhCC
Confidence 4679999998764
No 309
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=21.55 E-value=15 Score=21.24 Aligned_cols=44 Identities=25% Similarity=0.600 Sum_probs=28.7
Q ss_pred CccCcccCCCcccCCCCcccc-cccCCccchhHHHHHhhc---CCCCCCCCCcc
Q psy17995 3 DQECPRCKTTKYRKPTLKLMV-NICGHPLCEGCVDLLFLK---GTGNCYECNQP 52 (120)
Q Consensus 3 ~~~CpiC~~~~~~~p~~~~~~-~~CGH~fC~~Ci~~~~~~---~~~~CP~C~~~ 52 (120)
+..|.+|... . . |+. ..|...|-..|+...+.. +...||.|...
T Consensus 8 ~~~C~vC~~~---g-~--ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 8 EDECAVCRDG---G-E--LICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp CCSBSSSSCC---S-S--CEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCCCccCCCC---C-C--EEEcCCCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 4579999952 1 1 232 378888888898754432 34679999654
No 310
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.51 E-value=25 Score=17.37 Aligned_cols=13 Identities=31% Similarity=0.779 Sum_probs=10.2
Q ss_pred CCCCCCCCccccC
Q psy17995 43 TGNCYECNQPLRR 55 (120)
Q Consensus 43 ~~~CP~C~~~~~~ 55 (120)
+..|+.|++.|..
T Consensus 12 ~~~C~~C~k~f~~ 24 (46)
T 2eow_A 12 PYKCNECGKAFRA 24 (46)
T ss_dssp CEECTTSCCEESS
T ss_pred CeeccccCChhcC
Confidence 4679999988764
No 311
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.42 E-value=26 Score=17.06 Aligned_cols=13 Identities=23% Similarity=0.687 Sum_probs=10.2
Q ss_pred CCCCCCCCccccC
Q psy17995 43 TGNCYECNQPLRR 55 (120)
Q Consensus 43 ~~~CP~C~~~~~~ 55 (120)
+..|+.|++.|..
T Consensus 12 ~~~C~~C~k~f~~ 24 (44)
T 2eof_A 12 PYECNECQKAFNT 24 (44)
T ss_dssp SEECTTTCCEESC
T ss_pred CeECCCCCcccCC
Confidence 4679999988764
No 312
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.37 E-value=26 Score=17.34 Aligned_cols=13 Identities=23% Similarity=0.631 Sum_probs=10.2
Q ss_pred CCCCCCCCccccC
Q psy17995 43 TGNCYECNQPLRR 55 (120)
Q Consensus 43 ~~~CP~C~~~~~~ 55 (120)
+..|+.|++.|..
T Consensus 12 ~~~C~~C~k~F~~ 24 (46)
T 2emi_A 12 HYECSECGKAFIQ 24 (46)
T ss_dssp CEECSSSCCEESS
T ss_pred CCCCCCCCcccCC
Confidence 4679999988754
No 313
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.25 E-value=25 Score=17.28 Aligned_cols=13 Identities=23% Similarity=0.575 Sum_probs=10.1
Q ss_pred CCCCCCCCccccC
Q psy17995 43 TGNCYECNQPLRR 55 (120)
Q Consensus 43 ~~~CP~C~~~~~~ 55 (120)
+..|+.|++.|..
T Consensus 12 ~~~C~~C~k~F~~ 24 (44)
T 2epv_A 12 PYECNECGKAFIW 24 (44)
T ss_dssp SEECSSSCCEESS
T ss_pred CeECCCCCcccCc
Confidence 4679999988753
No 314
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=21.20 E-value=42 Score=17.21 Aligned_cols=12 Identities=25% Similarity=0.548 Sum_probs=9.1
Q ss_pred CCCCCCCccccC
Q psy17995 44 GNCYECNQPLRR 55 (120)
Q Consensus 44 ~~CP~C~~~~~~ 55 (120)
..|+.|+..+..
T Consensus 2 ~~C~~C~~~f~~ 13 (57)
T 1bbo_A 2 YICEECGIRXKK 13 (57)
T ss_dssp CBCTTTCCBCSS
T ss_pred CcCCCCcCcCCC
Confidence 469999887753
No 315
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A
Probab=21.16 E-value=26 Score=17.39 Aligned_cols=13 Identities=23% Similarity=0.562 Sum_probs=10.2
Q ss_pred CCCCCCCCccccC
Q psy17995 43 TGNCYECNQPLRR 55 (120)
Q Consensus 43 ~~~CP~C~~~~~~ 55 (120)
+..|+.|++.|..
T Consensus 12 ~~~C~~C~k~F~~ 24 (46)
T 2emj_A 12 PFECAECGKSFSI 24 (46)
T ss_dssp SEECSSSSCEESS
T ss_pred CEECCCCCcccCC
Confidence 4679999988764
No 316
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=20.83 E-value=53 Score=18.67 Aligned_cols=44 Identities=23% Similarity=0.545 Sum_probs=24.7
Q ss_pred ccCcccCCCccc---CCCCcccccccCCccchhHHHHHhhcCCCCCCCCCccccCCCCc
Q psy17995 4 QECPRCKTTKYR---KPTLKLMVNICGHPLCEGCVDLLFLKGTGNCYECNQPLRRGNFR 59 (120)
Q Consensus 4 ~~CpiC~~~~~~---~p~~~~~~~~CGH~fC~~Ci~~~~~~~~~~CP~C~~~~~~~~~~ 59 (120)
..|+.|...++. +.. ++..=|..+-..|+ .|..|+.+|....|.
T Consensus 16 ~~C~~C~~~I~~~g~~~~---~~~a~~~~~H~~CF---------~C~~C~~~L~~~~f~ 62 (77)
T 2egq_A 16 KKCAGCKNPITGFGKGSS---VVAYEGQSWHDYCF---------HCKKCSVNLANKRFV 62 (77)
T ss_dssp CCCSSSCCCCCCCSSCCC---EEEETTEEEETTTC---------BCSSSCCBCTTSCCC
T ss_pred ccCcccCCcccCCCCCce---eEEECcceeCcccC---------EehhcCCCCCCCccE
Confidence 369999875542 111 23333555555665 266677777665553
No 317
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A
Probab=20.68 E-value=48 Score=14.48 Aligned_cols=13 Identities=23% Similarity=0.478 Sum_probs=9.1
Q ss_pred CCCCC--CCCccccC
Q psy17995 43 TGNCY--ECNQPLRR 55 (120)
Q Consensus 43 ~~~CP--~C~~~~~~ 55 (120)
+..|+ .|++.|..
T Consensus 2 p~~C~~~~C~k~f~~ 16 (31)
T 1sp2_A 2 PFMCTWSYCGKRFTR 16 (31)
T ss_dssp CCBCCSTTCCCBCSS
T ss_pred CcCCcCCCCCcccCC
Confidence 35687 89887753
No 318
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.60 E-value=27 Score=17.28 Aligned_cols=13 Identities=15% Similarity=0.565 Sum_probs=10.2
Q ss_pred CCCCCCCCccccC
Q psy17995 43 TGNCYECNQPLRR 55 (120)
Q Consensus 43 ~~~CP~C~~~~~~ 55 (120)
+..|+.|++.|..
T Consensus 12 ~~~C~~C~k~F~~ 24 (46)
T 2em3_A 12 PYECKVCSKAFTQ 24 (46)
T ss_dssp SEECSSSCCEESS
T ss_pred CeECCCCCcccCC
Confidence 4679999988764
No 319
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.45 E-value=28 Score=17.15 Aligned_cols=13 Identities=23% Similarity=0.618 Sum_probs=10.2
Q ss_pred CCCCCCCCccccC
Q psy17995 43 TGNCYECNQPLRR 55 (120)
Q Consensus 43 ~~~CP~C~~~~~~ 55 (120)
+..|+.|++.|..
T Consensus 12 ~~~C~~C~k~f~~ 24 (46)
T 2yrj_A 12 PYRCGECGKAFAQ 24 (46)
T ss_dssp CEECSSSCCEESS
T ss_pred CeECCCCCCccCC
Confidence 4679999998764
No 320
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.44 E-value=25 Score=17.36 Aligned_cols=13 Identities=15% Similarity=0.572 Sum_probs=10.3
Q ss_pred CCCCCCCCccccC
Q psy17995 43 TGNCYECNQPLRR 55 (120)
Q Consensus 43 ~~~CP~C~~~~~~ 55 (120)
+..|+.|++.|..
T Consensus 12 ~~~C~~C~k~f~~ 24 (46)
T 2eq3_A 12 PYECNQCGKAFSV 24 (46)
T ss_dssp SSEETTTTEECSS
T ss_pred CeECCCCChhhCC
Confidence 4679999988764
No 321
>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=20.41 E-value=56 Score=17.94 Aligned_cols=11 Identities=36% Similarity=0.773 Sum_probs=7.6
Q ss_pred CCccCcccCCC
Q psy17995 2 DDQECPRCKTT 12 (120)
Q Consensus 2 d~~~CpiC~~~ 12 (120)
....||.|...
T Consensus 8 ~~~~Cp~Cg~~ 18 (50)
T 1tfi_A 8 DLFTCGKCKKK 18 (50)
T ss_dssp CCSCCSSSCSS
T ss_pred CccCCCCCCCC
Confidence 35689999743
No 322
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.35 E-value=27 Score=17.30 Aligned_cols=13 Identities=23% Similarity=0.759 Sum_probs=10.2
Q ss_pred CCCCCCCCccccC
Q psy17995 43 TGNCYECNQPLRR 55 (120)
Q Consensus 43 ~~~CP~C~~~~~~ 55 (120)
+..|+.|++.|..
T Consensus 12 ~~~C~~C~k~f~~ 24 (46)
T 2em4_A 12 PYECIECGKAFKT 24 (46)
T ss_dssp SEECSSSCCEESS
T ss_pred CcCCCCCCCccCC
Confidence 4679999988764
No 323
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.28 E-value=26 Score=16.87 Aligned_cols=13 Identities=15% Similarity=0.460 Sum_probs=10.1
Q ss_pred CCCCCCCCccccC
Q psy17995 43 TGNCYECNQPLRR 55 (120)
Q Consensus 43 ~~~CP~C~~~~~~ 55 (120)
+..|+.|++.|..
T Consensus 11 ~~~C~~C~k~f~~ 23 (42)
T 2en2_A 11 PYKCETCGARFVQ 23 (42)
T ss_dssp SEECTTTCCEESS
T ss_pred CEeCCCcChhhCC
Confidence 4679999988754
No 324
>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.20 E-value=26 Score=17.15 Aligned_cols=13 Identities=15% Similarity=0.506 Sum_probs=10.1
Q ss_pred CCCCCCCCccccC
Q psy17995 43 TGNCYECNQPLRR 55 (120)
Q Consensus 43 ~~~CP~C~~~~~~ 55 (120)
+..|+.|++.|..
T Consensus 12 ~~~C~~C~k~f~~ 24 (44)
T 2emb_A 12 RYECSKCQATFNL 24 (44)
T ss_dssp SEECTTTCCEESC
T ss_pred CeECCCCCCccCC
Confidence 4679999988753
No 325
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.20 E-value=28 Score=17.23 Aligned_cols=13 Identities=31% Similarity=0.756 Sum_probs=10.2
Q ss_pred CCCCCCCCccccC
Q psy17995 43 TGNCYECNQPLRR 55 (120)
Q Consensus 43 ~~~CP~C~~~~~~ 55 (120)
+..|+.|++.|..
T Consensus 12 ~~~C~~C~k~f~~ 24 (46)
T 2ene_A 12 PYKCNECGKVFRH 24 (46)
T ss_dssp SEECSSSCCEESS
T ss_pred CeECCCCCchhCC
Confidence 4679999988754
No 326
>3n1e_A Vacuolar protein sorting-associated protein 54; spinal muscular atrophy, vesicle trafficking, golgi apparatu tethering complex, GARP.; 1.70A {Mus musculus} PDB: 3n1b_A
Probab=20.17 E-value=31 Score=23.39 Aligned_cols=23 Identities=17% Similarity=0.416 Sum_probs=18.9
Q ss_pred CHHHHHHHHHHHHHHHHHHhccc
Q psy17995 91 SLAEYNDYLEEIEEIVFNLCNNI 113 (120)
Q Consensus 91 ~l~~y~~yle~~E~~i~~L~~~~ 113 (120)
-.++|++|.++|.+-...++++.
T Consensus 13 v~rdy~eH~~eI~~KLv~Im~~r 35 (141)
T 3n1e_A 13 ITKDYHDHIAEISAKLVAIMDSL 35 (141)
T ss_dssp HHTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45799999999999888877653
No 327
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.17 E-value=28 Score=17.22 Aligned_cols=13 Identities=23% Similarity=0.754 Sum_probs=10.2
Q ss_pred CCCCCCCCccccC
Q psy17995 43 TGNCYECNQPLRR 55 (120)
Q Consensus 43 ~~~CP~C~~~~~~ 55 (120)
+..|+.|++.|..
T Consensus 12 ~~~C~~C~k~f~~ 24 (46)
T 2yto_A 12 PYKCSDCGKAFTR 24 (46)
T ss_dssp CEECSSSCCEESS
T ss_pred CEECcccCCccCC
Confidence 4689999988764
No 328
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.10 E-value=29 Score=17.16 Aligned_cols=13 Identities=31% Similarity=0.772 Sum_probs=10.3
Q ss_pred CCCCCCCCccccC
Q psy17995 43 TGNCYECNQPLRR 55 (120)
Q Consensus 43 ~~~CP~C~~~~~~ 55 (120)
+..|+.|++.|..
T Consensus 12 ~~~C~~C~k~F~~ 24 (46)
T 2emy_A 12 PYECHECGKAFSR 24 (46)
T ss_dssp CEECSSSCCEESS
T ss_pred CcCCCCCCcccCc
Confidence 4679999998764
No 329
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=20.08 E-value=44 Score=21.48 Aligned_cols=11 Identities=27% Similarity=0.637 Sum_probs=9.1
Q ss_pred CCCCCCCcccc
Q psy17995 44 GNCYECNQPLR 54 (120)
Q Consensus 44 ~~CP~C~~~~~ 54 (120)
..|..|+.+|.
T Consensus 89 F~C~~C~~~L~ 99 (123)
T 2l4z_A 89 LKCSSCQAQLG 99 (123)
T ss_dssp SBCTTTCCBGG
T ss_pred cCcCcCCCccc
Confidence 67888998885
No 330
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.04 E-value=28 Score=17.20 Aligned_cols=13 Identities=15% Similarity=0.534 Sum_probs=10.2
Q ss_pred CCCCCCCCccccC
Q psy17995 43 TGNCYECNQPLRR 55 (120)
Q Consensus 43 ~~~CP~C~~~~~~ 55 (120)
+..|+.|++.|..
T Consensus 12 ~~~C~~C~k~f~~ 24 (46)
T 2eml_A 12 PYECSVCGKAFSH 24 (46)
T ss_dssp SEECSSSCCEESS
T ss_pred CeeCCCcCCccCC
Confidence 4679999988754
Done!