RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17995
(120 letters)
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4),
metal binding protein; NMR {Homo sapiens} SCOP:
g.44.1.1
Length = 65
Score = 94.6 bits (235), Expect = 3e-27
Identities = 50/65 (76%), Positives = 56/65 (86%)
Query: 1 MDDQECPRCKTTKYRKPTLKLMVNICGHPLCEGCVDLLFLKGTGNCYECNQPLRRGNFRV 60
MDDQ CPRCKTTKYR P+LKLMVN+CGH LCE CVDLLF++G GNC EC PLR+ NFRV
Sbjct: 1 MDDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFRV 60
Query: 61 QLFDD 65
QLF+D
Sbjct: 61 QLFED 65
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding,
translesion synthesis, UB conjugation pathway; 1.80A
{Homo sapiens}
Length = 99
Score = 35.1 bits (81), Expect = 8e-04
Identities = 15/75 (20%), Positives = 24/75 (32%), Gaps = 5/75 (6%)
Query: 6 CPRCKTTKYRKPTLKLMVNICGHPLCEGCVDLLFLKGTGNCYECNQPLRRGNFRVQLFDD 65
C C + ++ C H C C+ FL C C + + + D
Sbjct: 25 CGICFE-YFNIAM---IIPQCSHNYCSLCIRK-FLSYKTQCPTCCVTVTEPDLKNNRILD 79
Query: 66 SSVEKEVEIRKKLLK 80
V+ R LL+
Sbjct: 80 ELVKSLNFARNHLLQ 94
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.5 bits (73), Expect = 0.021
Identities = 18/113 (15%), Positives = 33/113 (29%), Gaps = 47/113 (41%)
Query: 47 YECNQP-LRRGNFR---------VQLFDDSSV---EKEVEIRKKL--------------- 78
E QP + + Q+F +V + +++R+ L
Sbjct: 100 TEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVL 159
Query: 79 -----------LKDYNKVEEDFN------SLAEYNDYLEEIEEIVFNLCNNID 114
Y KV+ + +L N E + E++ L ID
Sbjct: 160 GSGKTWVALDVCLSY-KVQCKMDFKIFWLNLKNCNS-PETVLEMLQKLLYQID 210
Score = 30.6 bits (68), Expect = 0.11
Identities = 13/77 (16%), Positives = 26/77 (33%), Gaps = 4/77 (5%)
Query: 47 YECNQPLRRGNFRVQLFDDSSVEKEVEIRKKLLKDYNKVEEDFNSLAEYNDYL----EEI 102
P R FR+ D +E+++ + L Y Y+ +
Sbjct: 482 KNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKY 541
Query: 103 EEIVFNLCNNIDILETN 119
E +V + + + +E N
Sbjct: 542 ERLVNAILDFLPKIEEN 558
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 73
Score = 30.8 bits (70), Expect = 0.023
Identities = 10/36 (27%), Positives = 14/36 (38%), Gaps = 2/36 (5%)
Query: 26 CGHPLCEGCVDLLF--LKGTGNCYECNQPLRRGNFR 59
CGH C C+ + G C C +R+ R
Sbjct: 38 CGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNAIR 73
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger,
zinc-binding protein, heterodimer, ubiquitin ligase,
antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Length = 117
Score = 30.6 bits (69), Expect = 0.050
Identities = 18/76 (23%), Positives = 29/76 (38%), Gaps = 7/76 (9%)
Query: 6 CPRCKTTKYRKPTLKLMVNICGHPLCEGCVDLLFLKGTGNCYECNQPLRRGNFRVQLFDD 65
C RC R+P + + C H C CV G C C P + ++ D
Sbjct: 25 CSRCTNI-LREP---VCLGGCEHIFCSNCVSDCIGTG---CPVCYTPAWIQDLKINRQLD 77
Query: 66 SSVEKEVEIRKKLLKD 81
S ++ ++R L +
Sbjct: 78 SMIQLCSKLRNLLHDN 93
>2ecw_A Tripartite motif-containing protein 30; metal binding protein,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 85
Score = 29.3 bits (66), Expect = 0.091
Identities = 13/39 (33%), Positives = 16/39 (41%), Gaps = 5/39 (12%)
Query: 26 CGHPLCEGCVDLLF-----LKGTGNCYECNQPLRRGNFR 59
C H C C+ L + G GNC C P GN +
Sbjct: 37 CNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLK 75
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.4 bits (68), Expect = 0.12
Identities = 12/86 (13%), Positives = 32/86 (37%), Gaps = 20/86 (23%)
Query: 34 CVDLLFLKGTGNCYECNQPLRRGNFRVQLFDDSSVEKEVEIRKKL------LKDYNK--V 85
+ +LF G C + + S +E +E + + + + + V
Sbjct: 299 AITVLFFIG----VRCYE-----AYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQV 349
Query: 86 EEDFNSLAEYNDYLEEIEEIVFNLCN 111
++ + + N +L +++ +L N
Sbjct: 350 QDY---VNKTNSHLPAGKQVEISLVN 372
>2ecy_A TNF receptor-associated factor 3; metal binding protein,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 66
Score = 28.6 bits (64), Expect = 0.14
Identities = 13/54 (24%), Positives = 20/54 (37%), Gaps = 5/54 (9%)
Query: 2 DDQECPRCKTTKYRKPTLKLMVNICGHPLCEGCVDLLFLKGTGNCYECNQPLRR 55
D +C +C P CGH CE C+ L + C C + + +
Sbjct: 14 DKYKCEKCHLV-LCSP----KQTECGHRFCESCMAALLSSSSPKCTACQESIVK 62
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 29.7 bits (66), Expect = 0.15
Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 9/46 (19%)
Query: 59 RVQLFDDSSVEKEVEIRKKLLKDYNKVEEDFNSLAEYNDYLEEIEE 104
R+Q D +S E E R+K KD E++ E++E+
Sbjct: 97 RLQELDAASKVMEQEWREKAKKD----LEEW-----NQRQSEQVEK 133
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding
domain; 1.90A {Mus musculus}
Length = 101
Score = 29.0 bits (64), Expect = 0.17
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 26 CGHPLCEGCVDLLFLKGTGNCYECNQPLRR 55
C H C C L KG C C+ P++R
Sbjct: 20 CKHVFCYDCAILHEKKGDKMCPGCSDPVQR 49
>3ctz_A XAA-Pro aminopeptidase 1; PITA-bread fold, alternative splicing,
cytoplasm, hydrolase, manganese, metal-binding,
metalloprotease, protease; HET: P6G; 1.60A {Homo
sapiens}
Length = 623
Score = 29.2 bits (66), Expect = 0.32
Identities = 12/62 (19%), Positives = 24/62 (38%)
Query: 59 RVQLFDDSSVEKEVEIRKKLLKDYNKVEEDFNSLAEYNDYLEEIEEIVFNLCNNIDILET 118
+ LF D +++ LL D E + Y L E++ + +L + +
Sbjct: 232 TIMLFIDGDRIDAPSVKEHLLLDLGLEAEYRIQVHPYKSILSELKALCADLSPREKVWVS 291
Query: 119 NK 120
+K
Sbjct: 292 DK 293
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional
control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Length = 78
Score = 27.8 bits (61), Expect = 0.37
Identities = 13/51 (25%), Positives = 18/51 (35%), Gaps = 1/51 (1%)
Query: 2 DDQECPRCKTTKYRKPTLKLMVNICGHPLCEGCVDLLFLKGTGNCYECNQP 52
D ECP C + CG+ +C C + G C C +P
Sbjct: 10 DPVECPLC-MEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKP 59
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA
damage, chromatin regulator, chromosomal protein, DNA
repair, metal-binding; 2.12A {Homo sapiens}
Length = 115
Score = 28.0 bits (62), Expect = 0.50
Identities = 13/77 (16%), Positives = 23/77 (29%)
Query: 26 CGHPLCEGCVDLLFLKGTGNCYECNQPLRRGNFRVQLFDDSSVEKEVEIRKKLLKDYNKV 85
C H LC+ C K + C C + + + + I +K K+
Sbjct: 33 CNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRRNSLVNVELWTIIQKHYPRECKL 92
Query: 86 EEDFNSLAEYNDYLEEI 102
E D + +
Sbjct: 93 RASGQESEEVADDYQPV 109
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 81
Score = 27.1 bits (60), Expect = 0.66
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 6/48 (12%)
Query: 5 ECPRCKTTKYRKPTLKLMVNICGHPLCEGCVDLLFLKGTGNCYECNQP 52
C C+ ++ P +V C H CE C L + T CY C+QP
Sbjct: 17 RCFICRQA-FQNP----VVTKCRHYFCESCA-LEHFRATPRCYICDQP 58
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 71
Score = 26.7 bits (59), Expect = 0.67
Identities = 14/58 (24%), Positives = 16/58 (27%), Gaps = 6/58 (10%)
Query: 2 DDQECPRCKTTKYRKPTLKLMVNICGHPLCEGCVDLLFLKGTGNCYECNQPLRRGNFR 59
EC C T +L C H C CV G C C Q +
Sbjct: 14 TVPECAICLQTCVHPVSLP-----CKHVFCYLCVKGASWLGK-RCALCRQEIPEDFLD 65
>2qxf_A Exodeoxyribonuclease I; alpha-beta domain, DNAQ superfamily,
SH3-like domain, produc structure, DNA damage, DNA
repair, exonuclease; HET: TMP; 1.50A {Escherichia coli}
SCOP: c.55.3.5 PDB: 1fxx_A* 3c94_A 3c95_A 3hl8_A*
3hp9_A*
Length = 482
Score = 28.1 bits (61), Expect = 0.72
Identities = 11/48 (22%), Positives = 20/48 (41%)
Query: 57 NFRVQLFDDSSVEKEVEIRKKLLKDYNKVEEDFNSLAEYNDYLEEIEE 104
R Q+F ++ + + L++ Y +E L Y +EI E
Sbjct: 429 EHRRQVFTPEFLQGYADELQMLVQQYADDKEKVALLKALWQYADEIVE 476
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium, NESG; HET: MSE; 2.29A {Homo
sapiens}
Length = 100
Score = 27.2 bits (60), Expect = 0.78
Identities = 14/87 (16%), Positives = 25/87 (28%), Gaps = 7/87 (8%)
Query: 2 DDQECPRCKTTKYRKPTLKLMVNICGHPLCEGCVDLLFLKGTGNCYECNQPLRRGNFRVQ 61
+ C C R + C C C+ + C C PL+
Sbjct: 21 EVFRCFICMEK-LRDAR---LCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNC 76
Query: 62 LFDDSSVEKEVEIRKKLLKDYNKVEED 88
+ + + ++ L K EE+
Sbjct: 77 RWAEEVTQ---QLDTLQLCSLTKHEEN 100
>2p4f_A Similar to SP|P32453 saccharomyces cerevisiae YNL ATP11; half
barrel, chaperone; HET: P6G; 1.40A {Candida glabrata cbs
138}
Length = 299
Score = 27.8 bits (61), Expect = 0.85
Identities = 12/48 (25%), Positives = 23/48 (47%), Gaps = 6/48 (12%)
Query: 60 VQLF--DDSSVEKEVEIRKKLLKDYNKVEEDFNSLAEYNDYLEEIEEI 105
VQ F S + R +LL+D+NK ++F+ N ++ + +
Sbjct: 254 VQRFYGAMGSETSIAKERIQLLEDFNKGSQNFD----INKLIQLAQSM 297
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain,
tripartite motif protein 34, interferon- responsive
finger protein 1; NMR {Homo sapiens}
Length = 79
Score = 26.5 bits (59), Expect = 0.88
Identities = 9/40 (22%), Positives = 15/40 (37%), Gaps = 6/40 (15%)
Query: 26 CGHPLCEGCVDLLF------LKGTGNCYECNQPLRRGNFR 59
CGH LC C+ + + G +C C + +
Sbjct: 30 CGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQ 69
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA
repair, ring finger domain, metal binding, DNA
replication; 1.75A {Homo sapiens}
Length = 124
Score = 27.2 bits (60), Expect = 0.93
Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 5/54 (9%)
Query: 2 DDQECPRCKTTKYRKPTLKLMVNICGHPLCEGCVDLLFLKGTGNCYECNQPLRR 55
+ +C C+ +R T C H +C+ C+D F +C C L R
Sbjct: 51 ETFQCICCQELVFRPITTV-----CQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics,
ring-finger, riken structural genomics/proteomics
initiative, RSGI; NMR {Arabidopsis thaliana} SCOP:
g.44.1.1
Length = 93
Score = 27.0 bits (59), Expect = 0.94
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 24 NICGHPLCEGCVDLLFLKGTGNCYECNQPLRR 55
N CG P C C + +GT NC +C +R
Sbjct: 39 NECGFPACRPCYEYERREGTQNCPQCKTRYKR 70
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha,
coiled coil, cytoplasm, metal- binding, UBL
conjugation, UBL conjugation pathway; 2.10A {Homo
sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Length = 118
Score = 26.7 bits (59), Expect = 1.3
Identities = 13/48 (27%), Positives = 20/48 (41%), Gaps = 4/48 (8%)
Query: 26 CGHPLCEGCVDLLFLKGTGNCYECNQPLRRGNFRVQLFDDSSVEKEVE 73
CGH C+ C+ C N+ L QLF D+ ++E+
Sbjct: 36 CGHRFCKACIIKSIRDAGHKCPVDNEILLEN----QLFPDNFAKREIL 79
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB
protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus}
SCOP: g.50.1.1
Length = 134
Score = 26.8 bits (58), Expect = 1.5
Identities = 7/61 (11%), Positives = 14/61 (22%)
Query: 1 MDDQECPRCKTTKYRKPTLKLMVNICGHPLCEGCVDLLFLKGTGNCYECNQPLRRGNFRV 60
C C + ++ C +C C + C L +
Sbjct: 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLEQREVWK 112
Query: 61 Q 61
+
Sbjct: 113 R 113
>2ecv_A Tripartite motif-containing protein 5; metal binding protein,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 85
Score = 26.1 bits (58), Expect = 1.5
Identities = 11/39 (28%), Positives = 16/39 (41%), Gaps = 5/39 (12%)
Query: 26 CGHPLCEGCV-----DLLFLKGTGNCYECNQPLRRGNFR 59
CGH C+ C+ + KG +C C + N R
Sbjct: 37 CGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIR 75
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin
ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB:
2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A
2ldr_A*
Length = 389
Score = 27.0 bits (59), Expect = 1.7
Identities = 7/30 (23%), Positives = 11/30 (36%)
Query: 26 CGHPLCEGCVDLLFLKGTGNCYECNQPLRR 55
CGH +C C+ C C ++
Sbjct: 350 CGHLMCTSCLTSWQESEGQGCPFCRCEIKG 379
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger,
zinc-binding protein, heterodimer, ubiquitin ligase,
antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Length = 112
Score = 26.2 bits (58), Expect = 1.8
Identities = 9/36 (25%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
Query: 26 CGHPLCEGCVDLLF--LKGTGNCYECNQPLRRGNFR 59
C H C+ C+ L KG C C + + + +
Sbjct: 39 CDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQ 74
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT-
interacting protein, ring domain, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 88
Score = 25.8 bits (57), Expect = 1.8
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 5 ECPRCKTTKYRKPTLKLMVNICGHPLCEGCVDLLFLKGTGNCYEC 49
ECP C + + L+ + CGH +C C++ L L + N C
Sbjct: 17 ECPIC-MESFTEEQLRPKLLHCGHTICRQCLEKL-LASSINGVRC 59
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.1 bits (56), Expect = 2.7
Identities = 7/28 (25%), Positives = 16/28 (57%), Gaps = 5/28 (17%)
Query: 51 QPLRRGNFRVQLF-DDS----SVEKEVE 73
Q L++ ++L+ DDS +++ +E
Sbjct: 20 QALKKLQASLKLYADDSAPALAIKATME 47
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative
splicing, apoptosis, cytoplasm, metal-binding, UBL
conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Length = 141
Score = 25.8 bits (56), Expect = 2.9
Identities = 14/53 (26%), Positives = 19/53 (35%), Gaps = 5/53 (9%)
Query: 26 CGHPLCEGCVDLLFLKGTGNCYECNQP-----LRRGNFRVQLFDDSSVEKEVE 73
CGH C C+ + G NC C F D++ +EVE
Sbjct: 49 CGHRYCSFCLASILSSGPQNCAACVHEGIYEEGISILESSSAFPDNAARREVE 101
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase,
nuclear protein, chromosomal protein, transcription
regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Length = 165
Score = 25.7 bits (56), Expect = 3.2
Identities = 12/67 (17%), Positives = 20/67 (29%), Gaps = 6/67 (8%)
Query: 22 MVNICGHPLCEGCVDLLFLKGTGNCYECNQPLRRGNFRVQLFDDSSVEKEVEIRKKLLKD 81
C H C C+ G C C + L L D + + + K+
Sbjct: 69 TTKECLHRFCADCIITALRSGNKECPTCRKKLVSKR---SLRPDPNFD---ALISKIYPS 122
Query: 82 YNKVEED 88
++ E
Sbjct: 123 RDEYEAH 129
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS),
leukemia, transcription regulation; NMR {Homo sapiens}
SCOP: g.44.1.1
Length = 56
Score = 24.6 bits (54), Expect = 3.4
Identities = 11/37 (29%), Positives = 13/37 (35%), Gaps = 4/37 (10%)
Query: 26 CGHPLCEGCVDLLFLKGTGNCYECNQPLRRGNFRVQL 62
C H LC GC++ C C P G L
Sbjct: 24 CLHTLCSGCLE----ASGMQCPICQAPWPLGADTPAL 56
>1xou_B Z5138 gene product; coiled coil, helix bundle, heterodimer,
structural protein/chaperone complex; 2.80A
{Escherichia coli} SCOP: a.231.1.2
Length = 95
Score = 25.2 bits (54), Expect = 4.1
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 65 DSSVEKEVEIRKKLLKDYNKVEEDFNSLAE 94
D + E+E KK++ +++ V+E N L+E
Sbjct: 14 DKKIRSEIEAIKKIIAEFDVVKESVNELSE 43
>2zig_A TTHA0409, putative modification methylase; methyltransferase, S-
adenosylmethionine, structural genomics, NPPSFA; 2.10A
{Thermus thermophilus} PDB: 2zie_A* 2zif_A
Length = 297
Score = 25.8 bits (57), Expect = 4.2
Identities = 6/28 (21%), Positives = 13/28 (46%)
Query: 78 LLKDYNKVEEDFNSLAEYNDYLEEIEEI 105
LK Y + +Y +L+E++ +
Sbjct: 52 TLKRYEDTPGQLGHIEDYEAFLDELDRV 79
>1z6u_A NP95-like ring finger protein isoform B; structural genomics
consortium, ligase, ubiquitin-protein ligase, cell cycle
regulation, SGC; 2.10A {Homo sapiens}
Length = 150
Score = 25.4 bits (55), Expect = 4.8
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 26 CGHPLCEGCVDLLFLKGTGNCYECNQPLRR 55
C H +C+ C+ F +C C L +
Sbjct: 96 CFHNVCKDCLQRSFKAQVFSCPACRHDLGQ 125
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of
EIF4E, cytoplasm, HOST-virus interaction, lipoprotein,
membrane; NMR {Lassa virus josiah}
Length = 99
Score = 24.4 bits (52), Expect = 7.3
Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 20 KLMVNICGHPLCEGCVDLLFLKGTGNCYECNQPL 53
K +V H LC C+ LL L + C C PL
Sbjct: 39 KGLVECNNHYLCLNCLTLL-LSVSNRCPICKMPL 71
>2lhk_A L0052; chaperone, type III secretion system; NMR {Escherichia
coli}
Length = 107
Score = 24.4 bits (52), Expect = 7.4
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 65 DSSVEKEVEIRKKLLKDYNKVEEDFNSLAE 94
D + E+E KK++ +++ V+E N L+E
Sbjct: 14 DKKIRSEIEAIKKIIAEFDVVKESVNELSE 43
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding;
HET: SUC; 1.50A {Homo sapiens}
Length = 64
Score = 24.0 bits (52), Expect = 7.4
Identities = 12/57 (21%), Positives = 21/57 (36%), Gaps = 3/57 (5%)
Query: 5 ECPRC--KTTKYRKPTLKLMVNICGHPLCEGCVDLLFLKGTGNCYECNQPLRRGNFR 59
CP C ++ + ++ CGH C C+ LK C C + + +
Sbjct: 5 SCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLR-DSLKNANTCPTCRKKINHKRYH 60
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 70
Score = 23.9 bits (52), Expect = 8.0
Identities = 9/35 (25%), Positives = 16/35 (45%), Gaps = 6/35 (17%)
Query: 2 DDQECPRCKTTKYRKPTLKLMVNICGHPLCEGCVD 36
D++EC C + ++ C H C+ C+D
Sbjct: 14 DEEECCICMDGR------ADLILPCAHSFCQKCID 42
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored
protein, protein binding GET4; 1.99A {Saccharomyces
cerevisiae} PDB: 3lku_A
Length = 312
Score = 25.0 bits (54), Expect = 8.1
Identities = 5/20 (25%), Positives = 9/20 (45%)
Query: 90 NSLAEYNDYLEEIEEIVFNL 109
+ Y LE + + FN+
Sbjct: 272 DFSQAYKSELEFLGQEYFNI 291
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase,
structural genomics, translation, NPPSFA; 2.42A {Aquifex
aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A*
Length = 317
Score = 24.9 bits (55), Expect = 8.1
Identities = 12/55 (21%), Positives = 25/55 (45%), Gaps = 8/55 (14%)
Query: 74 IRKKL---LKDYN-KVEEDFNSLAEY----NDYLEEIEEIVFNLCNNIDILETNK 120
IR ++ LK N +E+ F + + ++LEE + ++ + L+ K
Sbjct: 204 IRHRVIPELKRINENLEDTFLKMVKVLRAEREFLEEEAQKLYKEVKKGNCLDVKK 258
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein
biogenesis, GET PAT GET5 binding, protein transport;
1.98A {Chaetomium thermophilum}
Length = 336
Score = 24.6 bits (53), Expect = 9.5
Identities = 8/34 (23%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Query: 76 KKLLKDYNKVEEDFNSLAEYNDYLEEIEEIVFNL 109
++L Y + N ++ LE I E+ F +
Sbjct: 264 RQLKSKYEANLNELNG--IWDTALELIAEMYFGI 295
>3nv7_A Phosphopantetheine adenylyltransferase; helicobacter pylori 26695
strain, mutant I4V/N76Y, phosphopa adenylyltransferase;
1.75A {Helicobacter pylori} PDB: 3otw_A*
Length = 157
Score = 24.4 bits (54), Expect = 9.8
Identities = 7/32 (21%), Positives = 16/32 (50%), Gaps = 4/32 (12%)
Query: 62 LFDDSSVEKEVEIRKKLLKDYNKVE-EDFNSL 92
+F S+++ +++ + K + VE F L
Sbjct: 45 MF---SLDERLKMIQLATKSFKNVECVAFEGL 73
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.140 0.427
Gapped
Lambda K H
0.267 0.0544 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,886,769
Number of extensions: 104793
Number of successful extensions: 477
Number of sequences better than 10.0: 1
Number of HSP's gapped: 464
Number of HSP's successfully gapped: 93
Length of query: 120
Length of database: 6,701,793
Length adjustment: 82
Effective length of query: 38
Effective length of database: 4,412,271
Effective search space: 167666298
Effective search space used: 167666298
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.8 bits)