RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17995
(120 letters)
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens)
[TaxId: 9606]}
Length = 65
Score = 56.3 bits (135), Expect = 1e-12
Identities = 50/65 (76%), Positives = 56/65 (86%)
Query: 1 MDDQECPRCKTTKYRKPTLKLMVNICGHPLCEGCVDLLFLKGTGNCYECNQPLRRGNFRV 60
MDDQ CPRCKTTKYR P+LKLMVN+CGH LCE CVDLLF++G GNC EC PLR+ NFRV
Sbjct: 1 MDDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFRV 60
Query: 61 QLFDD 65
QLF+D
Sbjct: 61 QLFED 65
>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 97
Score = 28.6 bits (63), Expect = 0.090
Identities = 16/80 (20%), Positives = 24/80 (30%), Gaps = 7/80 (8%)
Query: 2 DDQECPRCKTTKYRKPTLKLMVNICGHPLCEGCVDLLFLKGTGNCYECNQPLRRGNFRVQ 61
C RC L C H C CV C C P + ++
Sbjct: 21 KLLRCSRCTNILREPVCLG----GCEHIFCSNCVSDCI---GTGCPVCYTPAWIQDLKIN 73
Query: 62 LFDDSSVEKEVEIRKKLLKD 81
DS ++ ++R L +
Sbjct: 74 RQLDSMIQLCSKLRNLLHDN 93
>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 103
Score = 28.1 bits (62), Expect = 0.13
Identities = 18/79 (22%), Positives = 30/79 (37%), Gaps = 7/79 (8%)
Query: 5 ECPRCKTTKYRKPTLKLMVNICGHPLCEGCVDLLF--LKGTGNCYECNQPLRRGNFRVQL 62
ECP C ++P + C H C+ C+ L KG C C + + + +
Sbjct: 23 ECPICLEL-IKEP----VSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQEST 77
Query: 63 FDDSSVEKEVEIRKKLLKD 81
VE+ ++I D
Sbjct: 78 RFSQLVEELLKIICAFQLD 96
>d1weoa_ g.44.1.1 (A:) Cellulose synthase A catalytic subunit 7,
IRX3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 93
Score = 27.5 bits (61), Expect = 0.21
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 24 NICGHPLCEGCVDLLFLKGTGNCYECNQPLRR 55
N CG P C C + +GT NC +C +R
Sbjct: 39 NECGFPACRPCYEYERREGTQNCPQCKTRYKR 70
>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 52
Score = 26.2 bits (57), Expect = 0.26
Identities = 12/49 (24%), Positives = 17/49 (34%), Gaps = 1/49 (2%)
Query: 5 ECPRCKTTKYRKPTLKLMVNICGHPLCEGCVDLLFLKGTGNCYECNQPL 53
ECP C + CG+ +C C + G C C +P
Sbjct: 2 ECPLC-MEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY 49
>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId:
9606]}
Length = 79
Score = 26.5 bits (58), Expect = 0.36
Identities = 7/30 (23%), Positives = 11/30 (36%)
Query: 26 CGHPLCEGCVDLLFLKGTGNCYECNQPLRR 55
CGH +C C+ C C ++
Sbjct: 41 CGHLMCTSCLTSWQESEGQGCPFCRCEIKG 70
>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein
1 (RAG1), dimerization domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 26.0 bits (57), Expect = 0.60
Identities = 7/38 (18%), Positives = 10/38 (26%)
Query: 22 MVNICGHPLCEGCVDLLFLKGTGNCYECNQPLRRGNFR 59
+ C H C C+ C C P +
Sbjct: 37 VETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLE 74
>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine
herpesvirus 1 [TaxId: 10326]}
Length = 68
Score = 25.7 bits (56), Expect = 0.69
Identities = 12/68 (17%), Positives = 23/68 (33%), Gaps = 5/68 (7%)
Query: 3 DQECPRCKTTKYRKPTLKLMVNICGHPLCEGCVDLLFLKGTGNCYECNQPLRRGNFRVQL 62
+ CP C P+ M C H C C+ +++ C C P+ ++
Sbjct: 5 AERCPIC----LEDPSNYSMALPCLHAFCYVCIT-RWIRQNPTCPLCKVPVESVVHTIES 59
Query: 63 FDDSSVEK 70
+ +
Sbjct: 60 DSEFGDQL 67
>d2qxfa1 c.55.3.5 (A:8-474) Exonuclease I {Escherichia coli K12
(Escherichia coli K-12) [TaxId: 83333]}
Length = 467
Score = 26.9 bits (58), Expect = 0.69
Identities = 10/46 (21%), Positives = 19/46 (41%)
Query: 57 NFRVQLFDDSSVEKEVEIRKKLLKDYNKVEEDFNSLAEYNDYLEEI 102
R Q+F ++ + + L++ Y +E L Y +EI
Sbjct: 422 EHRRQVFTPEFLQGYADELQMLVQQYADDKEKVALLKALWQYADEI 467
>d2oo2a1 a.8.11.1 (A:1-75) Hypothetical protein AF1782
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 75
Score = 25.1 bits (55), Expect = 1.2
Identities = 9/33 (27%), Positives = 17/33 (51%)
Query: 71 EVEIRKKLLKDYNKVEEDFNSLAEYNDYLEEIE 103
E E+R++ LK ++EE + ++ IE
Sbjct: 2 EEELRRETLKWLERIEERVKEIEGDEGFMRNIE 34
>d2ejqa1 d.92.1.17 (A:2-108) Uncharacterized protein TTHA0227
{Thermus thermophilus [TaxId: 274]}
Length = 107
Score = 25.1 bits (55), Expect = 1.4
Identities = 7/31 (22%), Positives = 10/31 (32%), Gaps = 2/31 (6%)
Query: 87 EDFNSLAEYNDYLEEIEEIVFNLCNNIDILE 117
E F L E EE+ E + +
Sbjct: 3 EAFVELVE--RLWEEVPEDFKRGLQGVHVFP 31
>d1wmia1 d.298.1.2 (A:1-88) Hypothetical protein PHS013
{Pyrococcus horikoshii [TaxId: 53953]}
Length = 88
Score = 24.9 bits (54), Expect = 1.6
Identities = 13/66 (19%), Positives = 29/66 (43%), Gaps = 4/66 (6%)
Query: 13 KYRKPTLKLMVNICGHPLCEGCVDLLFLKGTGNCYECNQPLRRGNFRV--QLFDDSSVEK 70
+ + L+ + P+ D++ L+GTG+ R G++RV + V K
Sbjct: 21 AHYRRFLEFRDILEYEPVPREKFDVIKLEGTGDLDLYR--ARLGDYRVIYSVNWKDKVIK 78
Query: 71 EVEIRK 76
++++
Sbjct: 79 ILKLKP 84
>d1xoub_ a.231.1.2 (B:) EspA chaperone CesA {Escherichia coli
[TaxId: 562]}
Length = 84
Score = 24.7 bits (53), Expect = 2.0
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 65 DSSVEKEVEIRKKLLKDYNKVEEDFNSLAE 94
D + E+E KK++ +++ V+E N L+E
Sbjct: 13 DKKIRSEIEAIKKIIAEFDVVKESVNELSE 42
>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2
{Cow (Bos taurus) [TaxId: 9913]}
Length = 364
Score = 24.3 bits (52), Expect = 4.5
Identities = 14/58 (24%), Positives = 21/58 (36%)
Query: 63 FDDSSVEKEVEIRKKLLKDYNKVEEDFNSLAEYNDYLEEIEEIVFNLCNNIDILETNK 120
FD S ++E KLL ++ +F E E + + D LE K
Sbjct: 298 FDIGSFDEEDTKGIKLLDSDQELYRNFPLTISERWQQEVAETVFDTINAETDRLEARK 355
>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa)
[TaxId: 4530]}
Length = 55
Score = 22.9 bits (49), Expect = 4.8
Identities = 13/52 (25%), Positives = 18/52 (34%), Gaps = 2/52 (3%)
Query: 2 DDQECPRCKTTKYRKPTLKLMVNICGHPLCEGCVDLLFLKGTGNCYECNQPL 53
D EC C + + CGH CVD ++L C C +
Sbjct: 4 DGVECAVCLA-ELEDGEEARFLPRCGHGFHAECVD-MWLGSHSTCPLCRLTV 53
>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId:
9606]}
Length = 426
Score = 24.3 bits (52), Expect = 5.0
Identities = 15/119 (12%), Positives = 33/119 (27%), Gaps = 11/119 (9%)
Query: 13 KYRKPTLKLMVNICGHPLCEGCVD------LLFLKGTGNCYECNQPLRRGNFRVQLFDDS 66
++ PL +G + + L G C EC L + +
Sbjct: 149 SLLNYEDGVLDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYPPQVNFPMCTIA 208
Query: 67 SVEKEVE-----IRKKLLKDYNKVEEDFNSLAEYNDYLEEIEEIVFNLCNNIDILETNK 120
S+ + E +R E + ++++ I + + +I
Sbjct: 209 SMPRLPEHCIEYVRMLQWPKEQPFGEGVPLDGDDPEHIQWIFQKSLERASQYNIRGVTY 267
>d2b3tb1 e.38.1.1 (B:7-354) Peptide chain release factor 1, RF1
{Escherichia coli [TaxId: 562]}
Length = 344
Score = 23.9 bits (51), Expect = 6.5
Identities = 5/30 (16%), Positives = 14/30 (46%)
Query: 76 KKLLKDYNKVEEDFNSLAEYNDYLEEIEEI 105
+ L ++Y ++ + ++ E+IE
Sbjct: 26 RALSREYAQLSDVSRCFTDWQQVQEDIETA 55
>d1d8ia_ d.63.1.1 (A:) mRNA triphosphatase CET1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 301
Score = 23.3 bits (50), Expect = 9.5
Identities = 10/65 (15%), Positives = 19/65 (29%), Gaps = 13/65 (20%)
Query: 55 RGNFRVQLFDDSSVEKEVEI---RKKLLKDYNKVEEDFNSLAEYNDYLEEIEEIVFNLCN 111
+ + S EVE+ LL ++ + D ++ N
Sbjct: 238 ENHNQNSKSRQSETTHEVELEINTPALLNAFDNITNDSKEY----------ASLIRTFLN 287
Query: 112 NIDIL 116
N I+
Sbjct: 288 NGTII 292
>d2f2ab1 a.182.1.2 (B:294-400) Aspartyl/glutamyl-tRNA(Asn/Gln)
amidotransferase subunit B, GatB, C-terminal domain
{Staphylococcus aureus [TaxId: 1280]}
Length = 107
Score = 23.1 bits (49), Expect = 9.5
Identities = 5/43 (11%), Positives = 14/43 (32%)
Query: 73 EIRKKLLKDYNKVEEDFNSLAEYNDYLEEIEEIVFNLCNNIDI 115
E + K + + D + L + + E + + +
Sbjct: 5 ERKAKYVNELGLPAYDAHVLTLTKEMSDFFESTIEHGADVKLT 47
>d2baia1 g.87.1.1 (A:1-32) Polyprotein leader polypeptide {Mengo
encephalomyocarditis virus [TaxId: 12107]}
Length = 32
Score = 21.7 bits (45), Expect = 9.8
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 1 MDDQECPRCKTTKYR 15
M +ECP+C +YR
Sbjct: 14 MTFEECPKCSALQYR 28
>d1i1rb_ a.26.1.1 (B:) Interleukin-6 {Human herpesvirus 8, Kaposi's
sarcoma herpes-virus [TaxId: 37296]}
Length = 167
Score = 23.2 bits (50), Expect = 10.0
Identities = 5/37 (13%), Positives = 11/37 (29%)
Query: 68 VEKEVEIRKKLLKDYNKVEEDFNSLAEYNDYLEEIEE 104
+ E + L + A ++ L I +
Sbjct: 15 LWVIDECFRDLCYRTGICKGILEPAAIFHLKLPAIND 51
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.140 0.427
Gapped
Lambda K H
0.267 0.0614 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 488,306
Number of extensions: 23313
Number of successful extensions: 140
Number of sequences better than 10.0: 1
Number of HSP's gapped: 138
Number of HSP's successfully gapped: 40
Length of query: 120
Length of database: 2,407,596
Length adjustment: 74
Effective length of query: 46
Effective length of database: 1,391,576
Effective search space: 64012496
Effective search space used: 64012496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.1 bits)