BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy17997
         (120 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3TV5|A Chain A, Crystal Structure Of The Humanized Carboxyltransferase
          Domain Of Yeast Acetyl-Coa Caroxylase In Complex With
          Compound 1
 pdb|3TV5|B Chain B, Crystal Structure Of The Humanized Carboxyltransferase
          Domain Of Yeast Acetyl-Coa Caroxylase In Complex With
          Compound 1
 pdb|3TV5|C Chain C, Crystal Structure Of The Humanized Carboxyltransferase
          Domain Of Yeast Acetyl-Coa Caroxylase In Complex With
          Compound 1
 pdb|3TVU|A Chain A, Crystal Structure Of The Humanized Carboxyltransferase
          Domain Of Yeast Acetyl-Coa Caroxylase In Complex With
          Compound 3
 pdb|3TVU|B Chain B, Crystal Structure Of The Humanized Carboxyltransferase
          Domain Of Yeast Acetyl-Coa Caroxylase In Complex With
          Compound 3
 pdb|3TVU|C Chain C, Crystal Structure Of The Humanized Carboxyltransferase
          Domain Of Yeast Acetyl-Coa Caroxylase In Complex With
          Compound 3
 pdb|3TVW|A Chain A, Crystal Structure Of The Humanized Carboxyltransferase
          Domain Of Yeast Acetyl-Coa Caroxylase In Complex With
          Compound 4
 pdb|3TVW|B Chain B, Crystal Structure Of The Humanized Carboxyltransferase
          Domain Of Yeast Acetyl-Coa Caroxylase In Complex With
          Compound 4
 pdb|3TVW|C Chain C, Crystal Structure Of The Humanized Carboxyltransferase
          Domain Of Yeast Acetyl-Coa Caroxylase In Complex With
          Compound 4
 pdb|3TZ3|A Chain A, Crystal Structure Of The Humanized Carboxyltransferase
          Domain Of Yeast Acetyl-Coa Caroxylase In Complex With
          Compound 2
 pdb|3TZ3|B Chain B, Crystal Structure Of The Humanized Carboxyltransferase
          Domain Of Yeast Acetyl-Coa Caroxylase In Complex With
          Compound 2
 pdb|3TZ3|C Chain C, Crystal Structure Of The Humanized Carboxyltransferase
          Domain Of Yeast Acetyl-Coa Caroxylase In Complex With
          Compound 2
          Length = 769

 Score = 27.7 bits (60), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)

Query: 5  VTDLPALFSQPSQDLPKHFSSGIRIGSNLGLSVPAIVKPELGPLYKYE 52
          V D P LF Q S    K+FS+ +++  +  +S   +++ E G L + E
Sbjct: 36 VYDFPELFRQASSSQWKNFSADVKLTDDFFIS-NELIEDENGELTEVE 82


>pdb|1UYR|A Chain A, Acetyl-Coa Carboxylase Carboxyltransferase Domain In
          Complex With Inhibitor Diclofop
 pdb|1UYR|B Chain B, Acetyl-Coa Carboxylase Carboxyltransferase Domain In
          Complex With Inhibitor Diclofop
 pdb|1UYT|A Chain A, Acetyl-Coa Carboxylase Carboxyltransferase Domain
 pdb|1UYT|B Chain B, Acetyl-Coa Carboxylase Carboxyltransferase Domain
 pdb|1UYT|C Chain C, Acetyl-Coa Carboxylase Carboxyltransferase Domain
          Length = 737

 Score = 27.7 bits (60), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)

Query: 5  VTDLPALFSQPSQDLPKHFSSGIRIGSNLGLSVPAIVKPELGPLYKYE 52
          V D P LF Q S    K+FS+ +++  +  +S   +++ E G L + E
Sbjct: 27 VYDFPELFRQASSSQWKNFSADVKLTDDFFIS-NELIEDENGELTEVE 73


>pdb|3PGQ|A Chain A, Crystal Structure Of The Carboxyltransferase Domain Of
          S. Cerevisiae Acetyl Coa Carboxylase In Complex With
          Pinoxaden
 pdb|3PGQ|B Chain B, Crystal Structure Of The Carboxyltransferase Domain Of
          S. Cerevisiae Acetyl Coa Carboxylase In Complex With
          Pinoxaden
 pdb|3PGQ|C Chain C, Crystal Structure Of The Carboxyltransferase Domain Of
          S. Cerevisiae Acetyl Coa Carboxylase In Complex With
          Pinoxaden
          Length = 764

 Score = 27.7 bits (60), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)

Query: 5  VTDLPALFSQPSQDLPKHFSSGIRIGSNLGLSVPAIVKPELGPLYKYE 52
          V D P LF Q S    K+FS+ +++  +  +S   +++ E G L + E
Sbjct: 33 VYDFPELFRQASSSQWKNFSADVKLTDDFFIS-NELIEDENGELTEVE 79


>pdb|1UYV|A Chain A, Acetyl-Coa Carboxylase Carboxyltransferase Domain L1705i
          V1967i Mutant
 pdb|1UYV|B Chain B, Acetyl-Coa Carboxylase Carboxyltransferase Domain L1705i
          V1967i Mutant
 pdb|1UYV|C Chain C, Acetyl-Coa Carboxylase Carboxyltransferase Domain L1705i
          V1967i Mutant
          Length = 737

 Score = 27.7 bits (60), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)

Query: 5  VTDLPALFSQPSQDLPKHFSSGIRIGSNLGLSVPAIVKPELGPLYKYE 52
          V D P LF Q S    K+FS+ +++  +  +S   +++ E G L + E
Sbjct: 27 VYDFPELFRQASSSQWKNFSADVKLTDDFFIS-NELIEDENGELTEVE 73


>pdb|3H0J|A Chain A, Crystal Structure Of The Carboxyltransferase Domain Of
          Acetyl-Coenzyme A Carboxylase In Complex With Compound
          2
 pdb|3H0J|B Chain B, Crystal Structure Of The Carboxyltransferase Domain Of
          Acetyl-Coenzyme A Carboxylase In Complex With Compound
          2
 pdb|3H0J|C Chain C, Crystal Structure Of The Carboxyltransferase Domain Of
          Acetyl-Coenzyme A Carboxylase In Complex With Compound
          2
 pdb|3H0S|A Chain A, Crystal Structure Of The Carboxyltransferase Domain Of
          Acetyl-Coenzyme A Carboxylase In Complex With Compound
          7
 pdb|3H0S|B Chain B, Crystal Structure Of The Carboxyltransferase Domain Of
          Acetyl-Coenzyme A Carboxylase In Complex With Compound
          7
 pdb|3H0S|C Chain C, Crystal Structure Of The Carboxyltransferase Domain Of
          Acetyl-Coenzyme A Carboxylase In Complex With Compound
          7
 pdb|3H0Q|A Chain A, Crystal Structure Of The Carboxyltransferase Domain Of
          Acetyl-Coenzyme A Carboxylase In Complex With Compound
          3
 pdb|3H0Q|B Chain B, Crystal Structure Of The Carboxyltransferase Domain Of
          Acetyl-Coenzyme A Carboxylase In Complex With Compound
          3
 pdb|3H0Q|C Chain C, Crystal Structure Of The Carboxyltransferase Domain Of
          Acetyl-Coenzyme A Carboxylase In Complex With Compound
          3
          Length = 769

 Score = 27.7 bits (60), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)

Query: 5  VTDLPALFSQPSQDLPKHFSSGIRIGSNLGLSVPAIVKPELGPLYKYE 52
          V D P LF Q S    K+FS+ +++  +  +S   +++ E G L + E
Sbjct: 36 VYDFPELFRQASSSQWKNFSADVKLTDDFFIS-NELIEDENGELTEVE 82


>pdb|1W2X|A Chain A, Crystal Structure Of The Carboxyltransferase Domain Of
          Acetyl-Coenzyme A Carboxylase In Complex With Cp-640186
 pdb|1W2X|B Chain B, Crystal Structure Of The Carboxyltransferase Domain Of
          Acetyl-Coenzyme A Carboxylase In Complex With Cp-640186
 pdb|1W2X|C Chain C, Crystal Structure Of The Carboxyltransferase Domain Of
          Acetyl-Coenzyme A Carboxylase In Complex With Cp-640186
 pdb|3K8X|A Chain A, Crystal Structure Of The Carboxyltransferase Domain Of
          Acetyl-Coenzyme A Carboxylase In Complex With
          Tepraloxydim
 pdb|3K8X|B Chain B, Crystal Structure Of The Carboxyltransferase Domain Of
          Acetyl-Coenzyme A Carboxylase In Complex With
          Tepraloxydim
 pdb|3K8X|C Chain C, Crystal Structure Of The Carboxyltransferase Domain Of
          Acetyl-Coenzyme A Carboxylase In Complex With
          Tepraloxydim
          Length = 758

 Score = 27.7 bits (60), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)

Query: 5  VTDLPALFSQPSQDLPKHFSSGIRIGSNLGLSVPAIVKPELGPLYKYE 52
          V D P LF Q S    K+FS+ +++  +  +S   +++ E G L + E
Sbjct: 33 VYDFPELFRQASSSQWKNFSADVKLTDDFFIS-NELIEDENGELTEVE 79


>pdb|1UYS|A Chain A, Acetyl-Coa Carboxylase Carboxyltransferase Domain In
          Complex With Inhibitor Haloxyfop
 pdb|1UYS|B Chain B, Acetyl-Coa Carboxylase Carboxyltransferase Domain In
          Complex With Inhibitor Haloxyfop
 pdb|1UYS|C Chain C, Acetyl-Coa Carboxylase Carboxyltransferase Domain In
          Complex With Inhibitor Haloxyfop
          Length = 737

 Score = 27.3 bits (59), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)

Query: 5  VTDLPALFSQPSQDLPKHFSSGIRIGSNLGLSVPAIVKPELGPLYKYE 52
          V D P LF Q S    K+FS+ +++  +  +S   +++ E G L + E
Sbjct: 27 VYDFPELFRQASSSQWKNFSADVKLTDDFFIS-NELIEDENGELTEVE 73


>pdb|3LHO|A Chain A, Crystal Structure Of Putative Hydrolase (Yp_751971.1)
          From Shewanella Frigidimarina Ncimb 400 At 1.80 A
          Resolution
          Length = 267

 Score = 27.3 bits (59), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 28/69 (40%), Gaps = 11/69 (15%)

Query: 6  TDLPALFSQPSQDLPKHFSSGIRIGSNLGLSVPA-----------IVKPELGPLYKYEPT 54
          TD+ ALF+   QD  K   S  +I   LG   P            I K  L  L K+  +
Sbjct: 4  TDVNALFAALWQDYIKXTPSAAKIHQLLGHGAPIINDHIALRTFNIAKVNLSVLAKHFTS 63

Query: 55 IKMIDGPDY 63
          I  +D  DY
Sbjct: 64 IGYVDSGDY 72


>pdb|1OD2|A Chain A, Acetyl-Coa Carboxylase Carboxyltransferase Domain
 pdb|1OD2|B Chain B, Acetyl-Coa Carboxylase Carboxyltransferase Domain
 pdb|1OD4|A Chain A, Acetyl-Coa Carboxylase Carboxyltransferase Domain
 pdb|1OD4|B Chain B, Acetyl-Coa Carboxylase Carboxyltransferase Domain
 pdb|1OD4|C Chain C, Acetyl-Coa Carboxylase Carboxyltransferase Domain
          Length = 805

 Score = 27.3 bits (59), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)

Query: 5   VTDLPALFSQPSQDLPKHFSSGIRIGSNLGLSVPAIVKPELGPLYKYE 52
           V D P LF Q S    K+FS+ +++  +  +S   +++ E G L + E
Sbjct: 80  VYDFPELFRQASSSQWKNFSADVKLTDDFFIS-NELIEDENGELTEVE 126


>pdb|3H9E|A Chain A, Crystal Structure Of Human Sperm-Specific
           Glyceraldehyde-3- Phosphate Dehydrogenase (Gapds)
           Complex With Nad And Phosphate
 pdb|3H9E|B Chain B, Crystal Structure Of Human Sperm-Specific
           Glyceraldehyde-3- Phosphate Dehydrogenase (Gapds)
           Complex With Nad And Phosphate
 pdb|3PFW|O Chain O, Crystal Structure Of Human Sperm-Specific
           Glyceraldehyde-3-Phosphate Dehydrogenase (Gapds) Complex
           With Nad, A Binary Form
 pdb|3PFW|P Chain P, Crystal Structure Of Human Sperm-Specific
           Glyceraldehyde-3-Phosphate Dehydrogenase (Gapds) Complex
           With Nad, A Binary Form
 pdb|3H9E|O Chain O, Crystal Structure Of Human Sperm-Specific
           Glyceraldehyde-3-Phosphate Dehydrogenase (Gapds) Complex
           With Nad And Phosphate
 pdb|3H9E|P Chain P, Crystal Structure Of Human Sperm-Specific
           Glyceraldehyde-3-Phosphate Dehydrogenase (Gapds) Complex
           With Nad And Phosphate
          Length = 346

 Score = 26.2 bits (56), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 11/31 (35%), Positives = 17/31 (54%)

Query: 40  IVKPELGPLYKYEPTIKMIDGPDYPSWDDVR 70
           IV+  +  ++ Y  T K +DGP   +W D R
Sbjct: 174 IVEGLMTTVHSYTATQKTVDGPSRKAWRDGR 204


>pdb|3VC3|A Chain A, Crystal Structure Of Beta-Cyanoalanine Synthase K95a
           Mutant In Soybean
 pdb|3VC3|B Chain B, Crystal Structure Of Beta-Cyanoalanine Synthase K95a
           Mutant In Soybean
 pdb|3VC3|C Chain C, Crystal Structure Of Beta-Cyanoalanine Synthase K95a
           Mutant In Soybean
 pdb|3VC3|D Chain D, Crystal Structure Of Beta-Cyanoalanine Synthase K95a
           Mutant In Soybean
 pdb|3VC3|E Chain E, Crystal Structure Of Beta-Cyanoalanine Synthase K95a
           Mutant In Soybean
 pdb|3VC3|F Chain F, Crystal Structure Of Beta-Cyanoalanine Synthase K95a
           Mutant In Soybean
          Length = 344

 Score = 25.0 bits (53), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 13/49 (26%), Positives = 22/49 (44%)

Query: 52  EPTIKMIDGPDYPSWDDVRRGNYLKHVRTETVEEKAGGYVCAIATMRAL 100
           +PT  + D P Y    D    N +   +T  +E  +G    ++A M A+
Sbjct: 60  QPTASIADRPAYAMITDAEEKNLITPGKTTLIEPTSGNMGISMAFMAAM 108


>pdb|3PF2|A Chain A, The Crystal Structure Of The Major Pilin Gbs80 Of
          Streptococcus Agalactiae 35kda C-Terminal Fragment
 pdb|3PG2|A Chain A, The Crystal Structure Of The Major Pilin Gbs80 Of
          Streptococcus Agalactiae 35 Kda C-Terminal Fragment
 pdb|3PG2|B Chain B, The Crystal Structure Of The Major Pilin Gbs80 Of
          Streptococcus Agalactiae 35 Kda C-Terminal Fragment
          Length = 319

 Score = 25.0 bits (53), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 6/70 (8%)

Query: 5  VTDLPALFSQPSQDLPK--HFSSGIRIGSNLGLSVPAIVKPELGPLYKYEPTIKMIDGPD 62
          VTD P    +  +D+ K     +G  IG      + + +   LG   K+E T K  DG  
Sbjct: 3  VTDEP----KTDKDVKKLGQDDAGYTIGEEFKWFLKSTIPANLGDYEKFEITDKFADGLT 58

Query: 63 YPSWDDVRRG 72
          Y S   ++ G
Sbjct: 59 YKSVGKIKIG 68


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.315    0.134    0.400 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,932,253
Number of Sequences: 62578
Number of extensions: 166943
Number of successful extensions: 322
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 319
Number of HSP's gapped (non-prelim): 12
length of query: 120
length of database: 14,973,337
effective HSP length: 82
effective length of query: 38
effective length of database: 9,841,941
effective search space: 373993758
effective search space used: 373993758
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 45 (21.9 bits)