BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy17997
         (120 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P51949|MAT1_MOUSE CDK-activating kinase assembly factor MAT1 OS=Mus musculus GN=Mnat1
           PE=2 SV=2
          Length = 309

 Score = 66.6 bits (161), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 39/103 (37%), Positives = 56/103 (54%), Gaps = 3/103 (2%)

Query: 6   TDLPALFSQPSQDLPKHFSSGIRIGSNLGLSVPAIVKPELGPLYKYEPTIKMIDGPDYPS 65
           T L     +P    P  FS+GI++G  + L+   I K E   LY+Y+P      GP  P 
Sbjct: 206 TQLEMQLEKPRSMKPVTFSTGIKMGQQISLA--PIQKLE-EALYEYQPLQIETCGPQVPE 262

Query: 66  WDDVRRGNYLKHVRTETVEEKAGGYVCAIATMRALNDAFAGLY 108
            + + R  YL HVR  + ++ AGGY  ++A  RAL DAF+GL+
Sbjct: 263 QELLGRLGYLNHVRAASPQDLAGGYTSSLACHRALQDAFSGLF 305


>sp|P51948|MAT1_HUMAN CDK-activating kinase assembly factor MAT1 OS=Homo sapiens GN=MNAT1
           PE=1 SV=1
          Length = 309

 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 39/103 (37%), Positives = 57/103 (55%), Gaps = 3/103 (2%)

Query: 6   TDLPALFSQPSQDLPKHFSSGIRIGSNLGLSVPAIVKPELGPLYKYEPTIKMIDGPDYPS 65
           T L     +P    P  FS+GI++G ++ L+   I K E   LY+Y+P      GP  P 
Sbjct: 206 TQLEMQLEKPKPVKPVTFSTGIKMGQHISLA--PIHKLE-EALYEYQPLQIETYGPHVPE 262

Query: 66  WDDVRRGNYLKHVRTETVEEKAGGYVCAIATMRALNDAFAGLY 108
            + + R  YL HVR  + ++ AGGY  ++A  RAL DAF+GL+
Sbjct: 263 LEMLGRLGYLNHVRAASPQDLAGGYTSSLACHRALQDAFSGLF 305


>sp|P51951|MAT1_XENLA CDK-activating kinase assembly factor MAT1 OS=Xenopus laevis
           GN=mnat1 PE=2 SV=1
          Length = 309

 Score = 63.9 bits (154), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 36/86 (41%), Positives = 50/86 (58%), Gaps = 3/86 (3%)

Query: 23  FSSGIRIGSNLGLSVPAIVKPELGPLYKYEPTIKMIDGPDYPSWDDVRRGNYLKHVRTET 82
           FS+GI+ G ++  SVP     E   LY+Y+P      GP  P  + + R  YL HVR   
Sbjct: 223 FSTGIKKGHHIA-SVPVTKIEE--ALYQYQPIHIETYGPQVPHIEMLGRQGYLNHVRAAA 279

Query: 83  VEEKAGGYVCAIATMRALNDAFAGLY 108
            ++ AGGYV ++A  RAL DAF+GL+
Sbjct: 280 PQDLAGGYVSSLACHRALQDAFSGLF 305


>sp|P51950|MAT1_MARGL CDK-activating kinase assembly factor MAT1 OS=Marthasterias
           glacialis PE=1 SV=1
          Length = 324

 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/93 (38%), Positives = 50/93 (53%), Gaps = 3/93 (3%)

Query: 19  LPKH--FSSGIRIGSNLGLSVPAIVKPELGPLYKYEPTIKMIDGPDYPSWDDVRRGNYLK 76
           LPK   FS+GI++G     +   I K E   L+ YE       GP  PS D++    Y K
Sbjct: 216 LPKKTTFSTGIKVGFGYQDTFLPIPKQE-EILFTYEEETYETYGPSAPSTDELDTQRYNK 274

Query: 77  HVRTETVEEKAGGYVCAIATMRALNDAFAGLYH 109
           HVR  + +  AGGY   +A +RAL +AF+GL +
Sbjct: 275 HVRPASPQGIAGGYSQNLACLRALQEAFSGLLY 307


>sp|Q2G7F1|ISPE_NOVAD 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
           OS=Novosphingobium aromaticivorans (strain DSM 12444)
           GN=ispE PE=3 SV=1
          Length = 285

 Score = 29.6 bits (65), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 32/77 (41%), Gaps = 5/77 (6%)

Query: 1   MSENVTDLPALF----SQPSQDLPKHFSSGIRIGSNLGLSVPAIVKPELG-PLYKYEPTI 55
           M E    LPA +    ++   D+P    S   IG   G  +  I     G P+    P I
Sbjct: 127 MVERSHGLPADWHARAARLGADVPACVESAACIGRGTGTELEPIPNDLAGTPVLLVNPRI 186

Query: 56  KMIDGPDYPSWDDVRRG 72
            +  GP + +WD V RG
Sbjct: 187 PLATGPVFKAWDGVDRG 203


>sp|B0UFE2|PCKA_METS4 Phosphoenolpyruvate carboxykinase [ATP] OS=Methylobacterium sp.
           (strain 4-46) GN=pckA PE=3 SV=1
          Length = 536

 Score = 29.3 bits (64), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 6/44 (13%)

Query: 40  IVKPELGPLYKYEPTIKMIDGPDYPSWDDVRRGNYLKHVRTETV 83
           +++PE   L  YEP + +ID P + + D  R G     VR+ETV
Sbjct: 141 LIRPERDALGAYEPDLTIIDLPSFKA-DPARHG-----VRSETV 178


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.315    0.134    0.400 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,837,808
Number of Sequences: 539616
Number of extensions: 2058528
Number of successful extensions: 4044
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 4033
Number of HSP's gapped (non-prelim): 12
length of query: 120
length of database: 191,569,459
effective HSP length: 87
effective length of query: 33
effective length of database: 144,622,867
effective search space: 4772554611
effective search space used: 4772554611
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 55 (25.8 bits)