Query psy17997
Match_columns 120
No_of_seqs 54 out of 56
Neff 3.7
Searched_HMMs 29240
Date Fri Aug 16 19:38:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17997.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17997hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2yj1_B Alpha-beta-PUMA BH3 fol 73.6 1.3 4.5E-05 24.6 1.2 17 94-110 7-23 (26)
2 2vof_B BCL-2-binding component 72.1 1.8 6.1E-05 24.1 1.5 17 94-110 9-25 (26)
3 2ykt_A Brain-specific angiogen 34.9 11 0.00039 29.5 0.8 34 62-107 27-62 (253)
4 2nnc_A Sulfur covalently-bindi 34.6 7.7 0.00026 27.7 -0.2 46 3-52 67-112 (124)
5 2d1l_A Metastasis suppressor p 31.9 14 0.00046 29.4 0.8 34 62-107 29-64 (253)
6 2oxg_Y SOXY protein; immunoglo 29.2 7.1 0.00024 28.1 -1.1 48 3-52 65-112 (124)
7 3c8l_A FTSZ-like protein of un 25.9 28 0.00097 25.1 1.6 14 92-105 22-35 (122)
8 1cgm_E Cucumber green mottle m 20.1 59 0.002 24.6 2.4 20 98-117 142-161 (161)
9 4f55_A Spore cortex-lytic enzy 13.0 1E+02 0.0036 21.8 2.1 12 95-106 80-91 (128)
10 1ng7_A Poliovirus 3A-N, genome 11.6 1.3E+02 0.0044 19.3 2.0 25 46-71 2-27 (60)
No 1
>2yj1_B Alpha-beta-PUMA BH3 foldamer; apoptosis, membrane protein, BH3 domain, autophagy; HET: HT7 B3E B3Q HR7; 2.24A {Synthetic construct}
Probab=73.56 E-value=1.3 Score=24.59 Aligned_cols=17 Identities=24% Similarity=0.231 Sum_probs=14.4
Q ss_pred HhHHHHHHHHhhcccCC
Q psy17997 94 IATMRALNDAFAGLYHT 110 (120)
Q Consensus 94 laC~RALQEAfsgL~~~ 110 (120)
-+|+||+|+-++.+|..
T Consensus 7 ~a~L~~m~~DL~A~~~Q 23 (26)
T 2yj1_B 7 GAXLRXMADXLNXQYEX 23 (26)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHhHHhcCCCCc
Confidence 47999999999999864
No 2
>2vof_B BCL-2-binding component 3; BH3, apoptosis, Pro-surviVal, mitochondrion, protein- complex; 1.8A {Mus musculus} PDB: 2roc_B
Probab=72.11 E-value=1.8 Score=24.09 Aligned_cols=17 Identities=24% Similarity=0.399 Sum_probs=14.2
Q ss_pred HhHHHHHHHHhhcccCC
Q psy17997 94 IATMRALNDAFAGLYHT 110 (120)
Q Consensus 94 laC~RALQEAfsgL~~~ 110 (120)
-+|+|+|||-++.+|..
T Consensus 9 ~a~L~~~a~DLnA~y~q 25 (26)
T 2vof_B 9 GAQLRRIADDLNAQYER 25 (26)
T ss_dssp HHHHHHHHHHHHHHTC-
T ss_pred HHHHHHhchhhcccccC
Confidence 37999999999999853
No 3
>2ykt_A Brain-specific angiogenesis inhibitor 1-associate protein 2; signaling protein, NPY motif, binding pocket; 2.11A {Homo sapiens} PDB: 1y2o_A 1wdz_A
Probab=34.90 E-value=11 Score=29.49 Aligned_cols=34 Identities=18% Similarity=0.147 Sum_probs=26.4
Q ss_pred CCCCHHHhhhch--hhhhcccccchhhcCchhhHHhHHHHHHHHhhcc
Q psy17997 62 DYPSWDDVRRGN--YLKHVRTETVEEKAGGYVCAIATMRALNDAFAGL 107 (120)
Q Consensus 62 ~~P~~e~L~~~G--Yl~HVR~~s~~e~AGGfts~laC~RALQEAfsgL 107 (120)
..|.|++|.+.| |.+.+|+ .+.|.+|..|||..+
T Consensus 27 ~~P~~e~li~~~~kY~~al~~------------~~~a~~~f~dal~ki 62 (253)
T 2ykt_A 27 FNPSLRNFIAMGKNYEKALAG------------VTYAAKGYFDALVKM 62 (253)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHH
Confidence 568999999888 9988866 566777777777653
No 4
>2nnc_A Sulfur covalently-binding protein; sulfur binding protein, SOXY, beta sandwich, green sulfur BA ligand binding protein; 2.14A {Chlorobium limicola} PDB: 2nnf_A
Probab=34.62 E-value=7.7 Score=27.73 Aligned_cols=46 Identities=24% Similarity=0.331 Sum_probs=30.8
Q ss_pred CcccccccccCCCCCCCCCccccceeeccccccccCCccCCccCCCceee
Q psy17997 3 ENVTDLPALFSQPSQDLPKHFSSGIRIGSNLGLSVPAIVKPELGPLYKYE 52 (120)
Q Consensus 3 ~~~~~~~~~~~~~~~~k~~~FSTGIk~g~~~s~~~~pvpk~eeG~lY~Y~ 52 (120)
+|-.-+-+.|+-+-.-++ .|||.|||++++... .|.+. .|.+|.=.
T Consensus 67 ~NP~P~~a~f~~~p~~~~-~~stRirm~~ts~V~--Ava~~-dG~~~~a~ 112 (124)
T 2nnc_A 67 ANFSPMVASFDVLPRMKP-EVSLRMRMAKTENLV--VVVQA-GGKLYRAV 112 (124)
T ss_dssp TSSSCEEEEEEECTTSCC-EEEEEEECCSSEEEE--EEEEE-TTEEEEEE
T ss_pred CCCCCEEEEEEECCCCce-eEEEEEEeCCCccEE--EEEEe-CCEEEEEE
Confidence 455555566665443333 899999999887665 66667 68777533
No 5
>2d1l_A Metastasis suppressor protein 1; IRSP53, actin binding, IMD, protein binding; HET: MSE; 1.85A {Mus musculus}
Probab=31.86 E-value=14 Score=29.36 Aligned_cols=34 Identities=29% Similarity=0.598 Sum_probs=26.6
Q ss_pred CCCCHHHhhhch--hhhhcccccchhhcCchhhHHhHHHHHHHHhhcc
Q psy17997 62 DYPSWDDVRRGN--YLKHVRTETVEEKAGGYVCAIATMRALNDAFAGL 107 (120)
Q Consensus 62 ~~P~~e~L~~~G--Yl~HVR~~s~~e~AGGfts~laC~RALQEAfsgL 107 (120)
..|.|++|.++| |.+.+|+ .+.|.+|..|||.-+
T Consensus 29 ~~P~~e~lv~~g~ky~~al~~------------~~~a~~af~Da~qKv 64 (253)
T 2d1l_A 29 SYPVWEDFINKAGKLQSQLRT------------TVVAAAAFLDAFQKV 64 (253)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHH
T ss_pred cCcchHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHH
Confidence 458899999999 9999876 456777777777643
No 6
>2oxg_Y SOXY protein; immunoglobulin-like beta-sandwich fold, transport protein; 1.40A {Paracoccus denitrificans} PDB: 2oxh_Y* 2ox5_Y*
Probab=29.20 E-value=7.1 Score=28.08 Aligned_cols=48 Identities=19% Similarity=0.178 Sum_probs=31.2
Q ss_pred CcccccccccCCCCCCCCCccccceeeccccccccCCccCCccCCCceee
Q psy17997 3 ENVTDLPALFSQPSQDLPKHFSSGIRIGSNLGLSVPAIVKPELGPLYKYE 52 (120)
Q Consensus 3 ~~~~~~~~~~~~~~~~k~~~FSTGIk~g~~~s~~~~pvpk~eeG~lY~Y~ 52 (120)
+|-.-+-+.|+-+-..-...|||.|||++.+... .|.+...|.+|.=.
T Consensus 65 ~NP~P~va~F~~~p~~~~~~~stRIRm~~ts~V~--Avae~~dG~~~~a~ 112 (124)
T 2oxg_Y 65 GNPEPAVATFNFGPAAADQRAATRIRLAQTQDVI--ALAKMADGSVVKAQ 112 (124)
T ss_dssp TSSSCEEEEEEECTTEEEEEEEEEECCSSSEEEE--EEEEETTSCEEEEE
T ss_pred CCCCCEEEEEEeCCcccceeEEEEEEeCCCccEE--EEEEeCCCeEEEEE
Confidence 3444444555544434445699999999887665 67677678887533
No 7
>3c8l_A FTSZ-like protein of unknown function; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.22A {Nostoc punctiforme}
Probab=25.92 E-value=28 Score=25.15 Aligned_cols=14 Identities=43% Similarity=0.484 Sum_probs=11.6
Q ss_pred hHHhHHHHHHHHhh
Q psy17997 92 CAIATMRALNDAFA 105 (120)
Q Consensus 92 s~laC~RALQEAfs 105 (120)
..-|+.||++||++
T Consensus 22 ~TkAA~RAvrDAI~ 35 (122)
T 3c8l_A 22 PTIAASRAVRNAIA 35 (122)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh
Confidence 45689999999985
No 8
>1cgm_E Cucumber green mottle mosaic virus; helical virus; 3.40A {Cucumber green mottle mosaic virus} SCOP: a.24.5.1
Probab=20.13 E-value=59 Score=24.65 Aligned_cols=20 Identities=30% Similarity=0.185 Sum_probs=17.9
Q ss_pred HHHHHHhhcccCCCCCCCCC
Q psy17997 98 RALNDAFAGLYHTNKRTSPA 117 (120)
Q Consensus 98 RALQEAfsgL~~~~~~~~~~ 117 (120)
||.+|..+||-|.-..||.|
T Consensus 142 rasFEs~sGL~Wt~~~~~~~ 161 (161)
T 1cgm_E 142 RASFEAAFSVVWSEATTSKA 161 (161)
T ss_dssp HHHHHHHSCCCCCCCSSSCC
T ss_pred chhhhhhcCceeecccccCC
Confidence 89999999999999888754
No 9
>4f55_A Spore cortex-lytic enzyme; hydrolase, lytic transglycosylase; 1.85A {Bacillus cereus}
Probab=13.02 E-value=1e+02 Score=21.81 Aligned_cols=12 Identities=33% Similarity=0.504 Sum_probs=10.4
Q ss_pred hHHHHHHHHhhc
Q psy17997 95 ATMRALNDAFAG 106 (120)
Q Consensus 95 aC~RALQEAfsg 106 (120)
.|.+|.++|+.|
T Consensus 80 ~a~~aa~~aL~G 91 (128)
T 4f55_A 80 TAKKAVLDAING 91 (128)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHcC
Confidence 488999999986
No 10
>1ng7_A Poliovirus 3A-N, genome polyprotein [core protein P3A]; helical hairpin, unfolded domain, symmetric dimer, viral protein; NMR {Human poliovirus 1} SCOP: a.178.1.1
Probab=11.64 E-value=1.3e+02 Score=19.26 Aligned_cols=25 Identities=28% Similarity=0.448 Sum_probs=17.3
Q ss_pred CCCceeecccccc-CCCCCCCHHHhhh
Q psy17997 46 GPLYKYEPTIKMI-DGPDYPSWDDVRR 71 (120)
Q Consensus 46 G~lY~Y~Pl~~~~-~GP~~P~~e~L~~ 71 (120)
||. +|.++.+++ +-|.+|.+.+|.+
T Consensus 2 GP~-~~k~i~i~v~e~ppP~aI~DLLk 27 (60)
T 1ng7_A 2 GPL-QYKDLKIDIKTSPPPECINDLLQ 27 (60)
T ss_dssp CSS-CCCCCSCCCSCCCSSTTTHHHHH
T ss_pred CCC-ccccccccccCCCCCHHHHHHHH
Confidence 444 666777766 5888888877754
Done!