Query psy17997
Match_columns 120
No_of_seqs 54 out of 56
Neff 3.7
Searched_HMMs 13730
Date Fri Aug 16 19:39:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17997.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/17997hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2daha1 a.5.2.1 (A:8-48) Ubiqu 29.0 4.6 0.00033 22.7 -0.3 24 66-89 6-29 (41)
2 d2dnaa1 a.5.2.1 (A:12-61) Ubiq 25.6 6.7 0.00048 23.0 -0.1 25 66-90 12-36 (50)
3 d1cjya2 c.19.1.2 (A:142-721) C 23.8 16 0.0011 29.9 1.9 24 85-110 53-79 (580)
4 d2bwba1 a.5.2.1 (A:328-371) DS 22.6 7.5 0.00054 22.1 -0.3 24 66-89 9-32 (44)
5 d1veja1 a.5.2.1 (A:8-68) 49314 20.6 9.6 0.0007 23.0 -0.1 25 65-89 25-49 (61)
6 d1q67a_ b.55.1.7 (A:) Dcp1 {Ba 17.6 12 0.00087 27.5 -0.1 51 43-93 39-92 (207)
7 d1i5hw_ b.72.1.1 (W:) Ubiquiti 16.4 12 0.00084 21.5 -0.4 31 53-83 3-37 (50)
8 d1gtra2 c.26.1.1 (A:8-338) Glu 14.2 42 0.0031 24.6 2.3 16 47-62 245-260 (331)
9 d2h2ja2 b.85.7.3 (A:50-310) Ru 12.4 41 0.003 22.3 1.6 21 55-75 234-254 (261)
10 d1efub3 a.5.2.2 (B:1-54) Elong 12.1 39 0.0028 19.6 1.2 12 93-104 19-30 (54)
No 1
>d2daha1 a.5.2.1 (A:8-48) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=29.04 E-value=4.6 Score=22.68 Aligned_cols=24 Identities=17% Similarity=0.277 Sum_probs=16.7
Q ss_pred HHHhhhchhhhhcccccchhhcCc
Q psy17997 66 WDDVRRGNYLKHVRTETVEEKAGG 89 (120)
Q Consensus 66 ~e~L~~~GYl~HVR~~s~~e~AGG 89 (120)
+++|..|||.++-|....-..+||
T Consensus 6 L~~L~~MGF~d~~~Ni~AL~~t~G 29 (41)
T d2daha1 6 LEQLRSMGFLNREANLQALIATGG 29 (41)
T ss_dssp HHHHHHHTCCCHHHHHHHHHHHTS
T ss_pred HHHHHHcCCCCHHHHHHHHHHcCC
Confidence 577888888887776655555555
No 2
>d2dnaa1 a.5.2.1 (A:12-61) Ubiquilin-like protein Ubqlnl {Mouse (Mus musculus) [TaxId: 10090]}
Probab=25.57 E-value=6.7 Score=22.96 Aligned_cols=25 Identities=4% Similarity=-0.035 Sum_probs=17.1
Q ss_pred HHHhhhchhhhhcccccchhhcCch
Q psy17997 66 WDDVRRGNYLKHVRTETVEEKAGGY 90 (120)
Q Consensus 66 ~e~L~~~GYl~HVR~~s~~e~AGGf 90 (120)
+++|..|||.++-+....-..+||=
T Consensus 12 L~qL~~MGF~d~~~Ni~AL~~t~Gd 36 (50)
T d2dnaa1 12 MECLQAMGFVNYNANLQALIATDGD 36 (50)
T ss_dssp HHHHHHHTCCCHHHHHHHHHHTTSC
T ss_pred HHHHHHcCCCCHHHHHHHHHHcCCC
Confidence 6778888888877665555555553
No 3
>d1cjya2 c.19.1.2 (A:142-721) Cytosolic phospholipase A2 catalytic domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.82 E-value=16 Score=29.95 Aligned_cols=24 Identities=25% Similarity=0.589 Sum_probs=17.3
Q ss_pred hhcCchhhHHhH---HHHHHHHhhcccCC
Q psy17997 85 EKAGGYVCAIAT---MRALNDAFAGLYHT 110 (120)
Q Consensus 85 e~AGGfts~laC---~RALQEAfsgL~~~ 110 (120)
-.+|||+++++| +.||++ .||+-+
T Consensus 53 ~SGGG~RAm~~gaG~l~ald~--~GLLq~ 79 (580)
T d1cjya2 53 GSGGGFRAMVGFSGVMKALYE--SGILDC 79 (580)
T ss_dssp ECCCHHHHHHHHHHHHHHHHH--TSCGGG
T ss_pred ecCcHHHHHHHhHHHHHHHHh--CCchHH
Confidence 458999999955 577776 566543
No 4
>d2bwba1 a.5.2.1 (A:328-371) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=22.62 E-value=7.5 Score=22.10 Aligned_cols=24 Identities=13% Similarity=0.304 Sum_probs=13.3
Q ss_pred HHHhhhchhhhhcccccchhhcCc
Q psy17997 66 WDDVRRGNYLKHVRTETVEEKAGG 89 (120)
Q Consensus 66 ~e~L~~~GYl~HVR~~s~~e~AGG 89 (120)
+++|..|||.++-+....-..+||
T Consensus 9 L~qL~~MGF~d~~~Ni~AL~~t~G 32 (44)
T d2bwba1 9 LRQLNDMGFFDFDRNVAALRRSGG 32 (44)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHTT
T ss_pred HHHHHHcCCCcHHHHHHHHHHcCC
Confidence 566777777766554433333333
No 5
>d1veja1 a.5.2.1 (A:8-68) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]}
Probab=20.61 E-value=9.6 Score=23.04 Aligned_cols=25 Identities=4% Similarity=0.090 Sum_probs=17.8
Q ss_pred CHHHhhhchhhhhcccccchhhcCc
Q psy17997 65 SWDDVRRGNYLKHVRTETVEEKAGG 89 (120)
Q Consensus 65 ~~e~L~~~GYl~HVR~~s~~e~AGG 89 (120)
-+++|..|||.++-+....-..+||
T Consensus 25 QL~qL~eMGF~d~~~Nl~AL~~t~G 49 (61)
T d1veja1 25 ELEELKALGFANRDANLQALVATDG 49 (61)
T ss_dssp HHHHHHHHTCCCHHHHHHHHHHTTS
T ss_pred HHHHHHHcCCCCHHHHHHHHHHcCC
Confidence 4788999999888766555555555
No 6
>d1q67a_ b.55.1.7 (A:) Dcp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=17.62 E-value=12 Score=27.49 Aligned_cols=51 Identities=14% Similarity=0.075 Sum_probs=11.3
Q ss_pred CccCCCceeeccccccC--CCCCC-CHHHhhhchhhhhcccccchhhcCchhhH
Q psy17997 43 PELGPLYKYEPTIKMID--GPDYP-SWDDVRRGNYLKHVRTETVEEKAGGYVCA 93 (120)
Q Consensus 43 ~eeG~lY~Y~Pl~~~~~--GP~~P-~~e~L~~~GYl~HVR~~s~~e~AGGfts~ 93 (120)
..||.+|+|+-...... -|..+ ...-+.+.||.++|+.....+.-|-+..-
T Consensus 39 ~vEGtLFVy~R~~~p~~~~lp~~~y~~~~~~~~~~~~~i~~~~~~d~~~~~~~~ 92 (207)
T d1q67a_ 39 EYQGVLAIYLRDVSQNTNLLPVSPQEVDIFDSQNGSNNIQVNNGSDNSNRNSSG 92 (207)
T ss_dssp EEEEEEEEEEECCC----------------------------------------
T ss_pred CceeEEEEEEeccccccccCCccchhhhhcccccccccccccccccccccchhc
Confidence 44799999998766543 23333 55567899999999999998877766543
No 7
>d1i5hw_ b.72.1.1 (W:) Ubiquitin ligase NEDD4 WWIII domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=16.44 E-value=12 Score=21.53 Aligned_cols=31 Identities=23% Similarity=0.430 Sum_probs=20.3
Q ss_pred ccccccCCCCCCCHHHh-hhch---hhhhcccccc
Q psy17997 53 PTIKMIDGPDYPSWDDV-RRGN---YLKHVRTETV 83 (120)
Q Consensus 53 Pl~~~~~GP~~P~~e~L-~~~G---Yl~HVR~~s~ 83 (120)
|..-+..||-+|.||+. ...| |++|+...|.
T Consensus 3 p~~~~~~~pLP~gWe~~~~~~G~~YY~nh~t~~T~ 37 (50)
T d1i5hw_ 3 PVDSNDLGPLPPGWEERTHTDGRVFFINHNIKKTQ 37 (50)
T ss_dssp CCSSSCCSSCSTTEEEEECTTSCEEEEETTTTEEE
T ss_pred CCCCCCCCCCCCCceEEECCCCCEEEEECCCCCEe
Confidence 33445568888888855 3334 8888876553
No 8
>d1gtra2 c.26.1.1 (A:8-338) Glutaminyl-tRNA synthetase (GlnRS) {Escherichia coli [TaxId: 562]}
Probab=14.21 E-value=42 Score=24.59 Aligned_cols=16 Identities=13% Similarity=-0.052 Sum_probs=12.7
Q ss_pred CCceeeccccccCCCC
Q psy17997 47 PLYKYEPTIKMIDGPD 62 (120)
Q Consensus 47 ~lY~Y~Pl~~~~~GP~ 62 (120)
+.|.|.|+.+...|..
T Consensus 245 p~~~h~~~~l~~~g~~ 260 (331)
T d1gtra2 245 HPRQYEFSRLNLEYTV 260 (331)
T ss_dssp CCEEEEECCCCBTTSC
T ss_pred Ccceeeccccccccch
Confidence 5789999998887753
No 9
>d2h2ja2 b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain {Garden pea (Pisum sativum) [TaxId: 3888]}
Probab=12.42 E-value=41 Score=22.33 Aligned_cols=21 Identities=0% Similarity=-0.077 Sum_probs=17.8
Q ss_pred ccccCCCCCCCHHHhhhchhh
Q psy17997 55 IKMIDGPDYPSWDDVRRGNYL 75 (120)
Q Consensus 55 ~~~~~GP~~P~~e~L~~~GYl 75 (120)
....|||..++.+.|.+-||+
T Consensus 234 I~isYG~~~~n~~ll~~yGFv 254 (261)
T d2h2ja2 234 VYIQYDLNKSNAELALDYGFI 254 (261)
T ss_dssp CEECSCSSCCHHHHHHHSSCC
T ss_pred EEEecCCCCCHHHHHHhCCCC
Confidence 445679999999999999997
No 10
>d1efub3 a.5.2.2 (B:1-54) Elongation factor Ts (EF-Ts), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=12.07 E-value=39 Score=19.62 Aligned_cols=12 Identities=25% Similarity=0.313 Sum_probs=10.0
Q ss_pred HHhHHHHHHHHh
Q psy17997 93 AIATMRALNDAF 104 (120)
Q Consensus 93 ~laC~RALQEAf 104 (120)
.+-|.+||+|+=
T Consensus 19 ~~dCKkAL~e~~ 30 (54)
T d1efub3 19 MMDCKKALTEAN 30 (54)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHcC
Confidence 578999999874
Done!