RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy17997
         (120 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
            acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
            synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 31.2 bits (70), Expect = 0.075
 Identities = 22/113 (19%), Positives = 31/113 (27%), Gaps = 36/113 (31%)

Query: 21   KHFSSGIRIGSNLGLSVPAIVK--PELGPLYKYEPTIKMIDGPDYPSWDDVRRGNYLKHV 78
             HF          G S+  IV   P    ++      K I            R NY    
Sbjct: 1651 NHFKD------TYGFSILDIVINNPVNLTIHFGGEKGKRI------------RENYSAM- 1691

Query: 79   RTETVEEKAGGYVCAIATMRALNDA-----FAG----LYHTNKRTSPA--AVE 120
                 E    G +      + +N+      F      L  T + T PA   +E
Sbjct: 1692 ---IFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSAT-QFTQPALTLME 1740



 Score = 28.9 bits (64), Expect = 0.44
 Identities = 21/112 (18%), Positives = 37/112 (33%), Gaps = 31/112 (27%)

Query: 12  FSQPSQDLPKHFSSGIRIGSNL---------------GLSVPAIVKPELGPLYKYEPTIK 56
             + + D  K F+ G+ I   L                +S P I    +  L  Y  T K
Sbjct: 198 LIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIG---VIQLAHYVVTAK 254

Query: 57  MIDGPDYPSWDDVRRGNYLKHVRTETVEEKAGGYVCAIATMRALNDAFAGLY 108
           ++             G    +++  T    + G V A+A   A  D++   +
Sbjct: 255 LL---------GFTPGELRSYLKGATG--HSQGLVTAVAI--AETDSWESFF 293


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 28.3 bits (62), Expect = 0.62
 Identities = 14/85 (16%), Positives = 23/85 (27%), Gaps = 41/85 (48%)

Query: 10  ALFSQ----PSQDLPKHFSSGIRIGSNLGLSVPAIVKPELGPLYKYEPTIKMI-----DG 60
           +L  +      QDLP+   +                     P       + +I     DG
Sbjct: 305 SLLLKYLDCRPQDLPREVLTT-------------------NPR-----RLSIIAESIRDG 340

Query: 61  PDYPSWDDVRRGNYLKHVRTETVEE 85
               +WD        KHV  + +  
Sbjct: 341 LA--TWD------NWKHVNCDKLTT 357


>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase,
           N-glycan, COR SH3 domain; 2.61A {Homo sapiens}
          Length = 526

 Score = 27.5 bits (60), Expect = 1.3
 Identities = 9/31 (29%), Positives = 14/31 (45%)

Query: 47  PLYKYEPTIKMIDGPDYPSWDDVRRGNYLKH 77
           P YK    I+ +  P YP  +    G++  H
Sbjct: 492 PSYKVREKIETVKYPTYPEAEKAGGGHHHHH 522


>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent
          dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2;
          1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB:
          1gp5_A* 1gp4_A* 2brt_A*
          Length = 356

 Score = 26.9 bits (60), Expect = 2.0
 Identities = 7/39 (17%), Positives = 14/39 (35%)

Query: 2  SENVTDLPALFSQPSQDLPKHFSSGIRIGSNLGLSVPAI 40
             +  +P  + +P ++L       +      G  VP I
Sbjct: 12 KSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTI 50


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.315    0.134    0.400 

Gapped
Lambda     K      H
   0.267   0.0844    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,863,472
Number of extensions: 103084
Number of successful extensions: 178
Number of sequences better than 10.0: 1
Number of HSP's gapped: 178
Number of HSP's successfully gapped: 13
Length of query: 120
Length of database: 6,701,793
Length adjustment: 82
Effective length of query: 38
Effective length of database: 4,412,271
Effective search space: 167666298
Effective search space used: 167666298
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 51 (23.2 bits)