RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17997
         (120 letters)



>d1wd3a1 b.29.1.21 (A:19-337) Alpha-L-arabinofuranosidase B,
           N-terminal domain {Aspergillus kawachii [TaxId: 40384]}
          Length = 319

 Score = 25.1 bits (55), Expect = 2.6
 Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 2/35 (5%)

Query: 86  KAGGYVCAIA--TMRALNDAFAGLYHTNKRTSPAA 118
           +AG   C  A  T RAL  +F+G  +  +R S   
Sbjct: 7   EAGDTPCVAAHSTTRALYSSFSGALYQLQRGSDDT 41


>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress
          (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 349

 Score = 24.9 bits (53), Expect = 2.8
 Identities = 7/39 (17%), Positives = 14/39 (35%)

Query: 2  SENVTDLPALFSQPSQDLPKHFSSGIRIGSNLGLSVPAI 40
             +  +P  + +P ++L       +      G  VP I
Sbjct: 11 KSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTI 49


>d1zgha1 b.46.1.1 (A:165-226) Methionyl-tRNAfmet
          formyltransferase, C-terminal domain {Clostridium
          thermocellum [TaxId: 1515]}
          Length = 62

 Score = 23.1 bits (50), Expect = 4.4
 Identities = 6/11 (54%), Positives = 8/11 (72%)

Query: 55 IKMIDGPDYPS 65
          I+M+DG  YP 
Sbjct: 21 IRMLDGEGYPR 31


>d1ozja_ d.164.1.1 (A:) SMAD MH1 domain {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 126

 Score = 23.2 bits (50), Expect = 8.7
 Identities = 6/28 (21%), Positives = 10/28 (35%), Gaps = 1/28 (3%)

Query: 66  WDDVRRGNYLKHVRT-ETVEEKAGGYVC 92
           W D+   + L+ +   E         VC
Sbjct: 88  WPDLHSHHELRAMELCEFAFNMKKDEVC 115


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.134    0.400 

Gapped
Lambda     K      H
   0.267   0.0654    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 446,440
Number of extensions: 19553
Number of successful extensions: 47
Number of sequences better than 10.0: 1
Number of HSP's gapped: 47
Number of HSP's successfully gapped: 8
Length of query: 120
Length of database: 2,407,596
Length adjustment: 74
Effective length of query: 46
Effective length of database: 1,391,576
Effective search space: 64012496
Effective search space used: 64012496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 47 (22.0 bits)