BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17999
(335 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1XUU|A Chain A, Crystal Structure Of Sialic Acid Synthase (Neub) In
Complex With Mn2+ And Malate From Neisseria Meningitidis
pdb|1XUZ|A Chain A, Crystal Structure Analysis Of Sialic Acid Synthase
(Neub)from Neisseria Meningitidis, Bound To Mn2+,
Phosphoenolpyruvate, And N- Acetyl Mannosaminitol
pdb|2ZDR|A Chain A, Crystal Structure Of Sialic Acid Synthase (Neub) From
Neisseria Meningitidis In Complex With Mg2+ And (4s)-2-
Methyl-2,4-Pentanediol
pdb|3CM4|A Chain A, Crystal Structure Of Metal-Free Sialic Acid Synthase
(Neub) From Neisseria Meningitidis In Complex With
Malate
Length = 349
Score = 126 bits (317), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 87/330 (26%), Positives = 150/330 (45%), Gaps = 27/330 (8%)
Query: 2 CGADCVKFQKSCLSTKFTQSALDRPYLSPHAWANTYGQHKQHLEFSQEEYVMLQQCADQV 61
GA+ VK Q + + + A + + +A + Y + + ++E+ + L++ +
Sbjct: 47 AGAEVVKHQTHIVEDEMSDEA--KQVIPGNADVSIY-EIMERCALNEEDEIKLKEYVESK 103
Query: 62 DIMFTASAMDQVSFDFLLSANVPFIKIGSGDSNNIPLIKYAASKQKPLIISTGMLPSIEH 121
++F ++ + + L ++P KIGSG+ NN PLIK AS KP+I+STGM SIE
Sbjct: 104 GMIFISTPFSRAAALRLQRMDIPAYKIGSGECNNYPLIKLVASFGKPIILSTGM-NSIES 162
Query: 122 VDNIYTTVKQYHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYPTPYHDINLNVIH 181
+ +++ PY ++LHC + YPTPY D+ L ++
Sbjct: 163 IKKSVEIIREAG-------------VPY----------ALLHCTNIYPTPYEDVRLGGMN 199
Query: 182 TLRSRYPDIPIGYSGHENGVHVCYAAVAMGAQIIEKHFTLDKSWKGSDHASSLTPPELKA 241
L +PD IG S H + C AVA+G I+E+HFT G D S+ P K
Sbjct: 200 DLSEAFPDAIIGLSDHTLDNYACLGAVALGGSILERHFTDRMDRPGPDIVCSMNPDTFKE 259
Query: 242 LVTGIRDIEQSLGSPTKRMQVSEAPCYAKLGKCIVSSCDIQAGTVLQEFHVCIKVAEPKG 301
L G ++ + G + E P +V+ DI+ G +L ++ +K
Sbjct: 260 LKQGAHALKLARGGKKDTIIAGEKPTKDFAFASVVADKDIKKGELLSGDNLWVKRPGNGD 319
Query: 302 ICGTRYASVMGRKVNRDIRRDESIQDIDLD 331
Y ++ G+ +IR+ I+ D++
Sbjct: 320 FSVNEYETLFGKVAACNIRKGAQIKKTDIE 349
>pdb|2WQP|A Chain A, Crystal Structure Of Sialic Acid Synthase Neub-Inhibitor
Complex
Length = 349
Score = 120 bits (301), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 86/330 (26%), Positives = 146/330 (44%), Gaps = 27/330 (8%)
Query: 2 CGADCVKFQKSCLSTKFTQSALDRPYLSPHAWANTYGQHKQHLEFSQEEYVMLQQCADQV 61
GA+ VK Q + + + A + + +A + Y + + ++E+ + L++ +
Sbjct: 47 AGAEVVKHQTHIVEDEXSDEA--KQVIPGNADVSIY-EIXERCALNEEDEIKLKEYVESK 103
Query: 62 DIMFTASAMDQVSFDFLLSANVPFIKIGSGDSNNIPLIKYAASKQKPLIISTGMLPSIEH 121
+F ++ + + L ++P KIGSG+ NN PLIK AS KP+I+STG SIE
Sbjct: 104 GXIFISTLFSRAAALRLQRXDIPAYKIGSGECNNYPLIKLVASFGKPIILSTGX-NSIES 162
Query: 122 VDNIYTTVKQYHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYPTPYHDINLNVIH 181
+ +++ PY ++LHC + YPTPY D+ L +
Sbjct: 163 IKKSVEIIREAG-------------VPY----------ALLHCTNIYPTPYEDVRLGGXN 199
Query: 182 TLRSRYPDIPIGYSGHENGVHVCYAAVAMGAQIIEKHFTLDKSWKGSDHASSLTPPELKA 241
L +PD IG S H + C AVA+G I+E+HFT G D S P K
Sbjct: 200 DLSEAFPDAIIGLSDHTLDNYACLGAVALGGSILERHFTDRXDRPGPDIVCSXNPDTFKE 259
Query: 242 LVTGIRDIEQSLGSPTKRMQVSEAPCYAKLGKCIVSSCDIQAGTVLQEFHVCIKVAEPKG 301
L G ++ + G + E P +V+ DI+ G +L ++ +K
Sbjct: 260 LKQGAHALKLARGGKKDTIIAGEKPTKDFAFASVVADKDIKKGELLSGDNLWVKRPGNGD 319
Query: 302 ICGTRYASVMGRKVNRDIRRDESIQDIDLD 331
Y ++ G+ +IR+ I+ D++
Sbjct: 320 FSVNEYETLFGKVAACNIRKGAQIKKTDIE 349
>pdb|1VLI|A Chain A, Crystal Structure Of Spore Coat Polysaccharide
Biosynthesis Protein Spse (Bsu37870) From Bacillus
Subtilis At 2.38 A Resolution
Length = 385
Score = 114 bits (286), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 88/291 (30%), Positives = 136/291 (46%), Gaps = 43/291 (14%)
Query: 53 MLQQCADQVDIMFTASAMDQVSFDFLLSANVPFIKIGSGDSNNIPLIKYAASKQKPLIIS 112
+L C ++ ++F ++ D+ S D L S + KI S + N++PL+KY A +P I S
Sbjct: 106 LLDYCREK-QVIFLSTVCDEGSADLLQSTSPSAFKIASYEINHLPLLKYVARLNRPXIFS 164
Query: 113 TGMLPSIEHVDNIYTTVKQYHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYPTPY 172
T I V + T++ +N ++I HCV+ YP P
Sbjct: 165 TAGA-EISDVHEAWRTIRAEGNN----------------------QIAIXHCVAKYPAPP 201
Query: 173 HDINLNVIHTLRSRYPDIPIGYSGH-ENGVHVCYAAVAMGAQIIEKHFTLDKSWKGSDHA 231
NL+VI L + +P+ IG+S H E+ AAV +GA++IEKHFT+DK+ G+DH+
Sbjct: 202 EYSNLSVIPXLAAAFPEAVIGFSDHSEHPTEAPCAAVRLGAKLIEKHFTIDKNLPGADHS 261
Query: 232 SSLTPPELKALVTGIRDIEQS-------------LGSPTKRMQVSEAPCYAKLGKCIVSS 278
+L P ELK V GIR E LGS K E + I ++
Sbjct: 262 FALNPDELKEXVDGIRKTEAELKQGITKPVSEKLLGSSYKTTTAIEGEIRNFAYRGIFTT 321
Query: 279 CDIQAGTVLQEFHVCI--KVAEPKGICGTRYASVM--GRKVNRDIRRDESI 325
IQ G E ++ + +P+G+ R+ ++ G + RDI D I
Sbjct: 322 APIQKGEAFSEDNIAVLRPGQKPQGLH-PRFFELLTSGVRAVRDIPADTGI 371
>pdb|3G8R|A Chain A, Crystal Structure Of Putative Spore Coat Polysaccharide
Biosynthesis Protein E From Chromobacterium Violaceum
Atcc 12472
pdb|3G8R|B Chain B, Crystal Structure Of Putative Spore Coat Polysaccharide
Biosynthesis Protein E From Chromobacterium Violaceum
Atcc 12472
Length = 350
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 72/166 (43%), Gaps = 26/166 (15%)
Query: 70 MDQVSFDFLLSANVPFIKIGSGDSNNIPLIKYAASKQKPLIISTGMLPSIEHVDNIYTTV 129
D+ S D + + + IKI S + PL++ A KP++ ST E +D + +
Sbjct: 99 FDEESVDLIEAHGIEIIKIASCSFTDWPLLERIARSDKPVVASTAGARR-EDIDKVVSFX 157
Query: 130 KQYHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYPTPYHDINLNVIHTLRSRYPD 189
+L+I HC V+ YPTP ++L I TLR +Y
Sbjct: 158 LHRGKDLTIXHC-----------------------VAEYPTPDDHLHLARIKTLRQQYAG 194
Query: 190 IPIGYSGHENG--VHVCYAAVAMGAQIIEKHFTLDKSWKGSDHASS 233
+ IGYS HE+ AVA GA + EKH L G ++ S+
Sbjct: 195 VRIGYSTHEDPDLXEPIXLAVAQGATVFEKHVGLPTDQYGINNYSA 240
>pdb|1RZM|A Chain A, Crystal Structure Of
3-Deoxy-D-Arabino-Heptulosonate-7-Phosphate Synthase
(Dahps) From Thermotoga Maritima Complexed With Cd2+,
Pep And E4p
pdb|1RZM|B Chain B, Crystal Structure Of
3-Deoxy-D-Arabino-Heptulosonate-7-Phosphate Synthase
(Dahps) From Thermotoga Maritima Complexed With Cd2+,
Pep And E4p
pdb|3PG9|A Chain A, Thermotoga Maritima Dah7p Synthase In Complex With
Inhibitor
pdb|3PG9|B Chain B, Thermotoga Maritima Dah7p Synthase In Complex With
Inhibitor
pdb|3PG9|C Chain C, Thermotoga Maritima Dah7p Synthase In Complex With
Inhibitor
pdb|3PG9|D Chain D, Thermotoga Maritima Dah7p Synthase In Complex With
Inhibitor
pdb|3PG9|E Chain E, Thermotoga Maritima Dah7p Synthase In Complex With
Inhibitor
pdb|3PG9|F Chain F, Thermotoga Maritima Dah7p Synthase In Complex With
Inhibitor
pdb|3PG9|G Chain G, Thermotoga Maritima Dah7p Synthase In Complex With
Inhibitor
pdb|3PG9|H Chain H, Thermotoga Maritima Dah7p Synthase In Complex With
Inhibitor
Length = 338
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 61/254 (24%), Positives = 106/254 (41%), Gaps = 48/254 (18%)
Query: 12 SCLSTKFTQSALDRPYLSPHAWANTYGQHKQHLEFSQEEYVMLQQCADQVDIMFTASAMD 71
S L K + +P SP+++ G ++ LE+ L++ AD+ + A+
Sbjct: 118 SELGVKVLRGGAYKPRTSPYSFQ---GLGEKGLEY-------LREAADKYGMYVVTEALG 167
Query: 72 QVSFDFL--LSANVPFIKIGSGDSNNIPLIKYAASKQKPLIISTGMLPSIEHVDNIYTTV 129
+ D L ++ I+IG+ ++ N L+ A S KP+++ G + +IE +
Sbjct: 168 E---DDLPKVAEYADIIQIGARNAQNFRLLSKAGSYNKPVLLKRGFMNTIEE----FLLS 220
Query: 130 KQY---HSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYPTPYHDINLNVI----HT 182
+Y N I+ C T K + L I SA P + +L ++ H+
Sbjct: 221 AEYIANSGNTKIILCERGIRT---FEKATRNTLDI----SAVPIIRKESHLPILVDPSHS 273
Query: 183 LRSRYPDIPIGYSGHENGVHVCYAAVAMGAQ--IIEKHFTLDKSWKGSDHASSLTPPELK 240
R IP+ AA+A+GA I+E H +K+ SD SL K
Sbjct: 274 GGRRDLVIPL-----------SRAAIAVGAHGIIVEVHPEPEKAL--SDGKQSLDFELFK 320
Query: 241 ALVTGIRDIEQSLG 254
LV ++ + +LG
Sbjct: 321 ELVQEMKKLADALG 334
>pdb|1VR6|A Chain A, Crystal Structure Of Phospho-2-dehydro-3-deoxyheptonate
Aldolase (dahp Synthase) (tm0343) From Thermotoga
Maritima At 1.92 A Resolution
pdb|1VR6|B Chain B, Crystal Structure Of Phospho-2-dehydro-3-deoxyheptonate
Aldolase (dahp Synthase) (tm0343) From Thermotoga
Maritima At 1.92 A Resolution
pdb|1VR6|C Chain C, Crystal Structure Of Phospho-2-dehydro-3-deoxyheptonate
Aldolase (dahp Synthase) (tm0343) From Thermotoga
Maritima At 1.92 A Resolution
pdb|1VR6|D Chain D, Crystal Structure Of Phospho-2-dehydro-3-deoxyheptonate
Aldolase (dahp Synthase) (tm0343) From Thermotoga
Maritima At 1.92 A Resolution
Length = 350
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 61/254 (24%), Positives = 106/254 (41%), Gaps = 48/254 (18%)
Query: 12 SCLSTKFTQSALDRPYLSPHAWANTYGQHKQHLEFSQEEYVMLQQCADQVDIMFTASAMD 71
S L K + +P SP+++ G ++ LE+ L++ AD+ + A+
Sbjct: 130 SELGVKVLRGGAYKPRTSPYSFQ---GLGEKGLEY-------LREAADKYGMYVVTEALG 179
Query: 72 QVSFDFL--LSANVPFIKIGSGDSNNIPLIKYAASKQKPLIISTGMLPSIEHVDNIYTTV 129
+ D L ++ I+IG+ ++ N L+ A S KP+++ G + +IE +
Sbjct: 180 E---DDLPKVAEYADIIQIGARNAQNFRLLSKAGSYNKPVLLKRGFMNTIEE----FLLS 232
Query: 130 KQY---HSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYPTPYHDINLNVI----HT 182
+Y N I+ C T K + L I SA P + +L ++ H+
Sbjct: 233 AEYIANSGNTKIILCERGIRT---FEKATRNTLDI----SAVPIIRKESHLPILVDPSHS 285
Query: 183 LRSRYPDIPIGYSGHENGVHVCYAAVAMGAQ--IIEKHFTLDKSWKGSDHASSLTPPELK 240
R IP+ AA+A+GA I+E H +K+ SD SL K
Sbjct: 286 GGRRDLVIPL-----------SRAAIAVGAHGIIVEVHPEPEKAL--SDGKQSLDFELFK 332
Query: 241 ALVTGIRDIEQSLG 254
LV ++ + +LG
Sbjct: 333 ELVQEMKKLADALG 346
>pdb|3PG8|A Chain A, Truncated Form Of 3-Deoxy-D-Arabino-Heptulosonate
7-Phosphate Synthase From Thermotoga Maritima
pdb|3PG8|B Chain B, Truncated Form Of 3-Deoxy-D-Arabino-Heptulosonate
7-Phosphate Synthase From Thermotoga Maritima
Length = 272
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 61/254 (24%), Positives = 106/254 (41%), Gaps = 48/254 (18%)
Query: 12 SCLSTKFTQSALDRPYLSPHAWANTYGQHKQHLEFSQEEYVMLQQCADQVDIMFTASAMD 71
S L K + +P SP+++ G ++ LE+ L++ AD+ + A+
Sbjct: 52 SELGVKVLRGGAYKPRTSPYSFQ---GLGEKGLEY-------LREAADKYGMYVVTEALG 101
Query: 72 QVSFDFL--LSANVPFIKIGSGDSNNIPLIKYAASKQKPLIISTGMLPSIEHVDNIYTTV 129
+ D L ++ I+IG+ ++ N L+ A S KP+++ G + +IE +
Sbjct: 102 E---DDLPKVAEYADIIQIGARNAQNFRLLSKAGSYNKPVLLKRGFMNTIEE----FLLS 154
Query: 130 KQY---HSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYPTPYHDINLNVI----HT 182
+Y N I+ C T K + L I SA P + +L ++ H+
Sbjct: 155 AEYIANSGNTKIILCERGIRT---FEKATRNTLDI----SAVPIIRKESHLPILVDPSHS 207
Query: 183 LRSRYPDIPIGYSGHENGVHVCYAAVAMGAQ--IIEKHFTLDKSWKGSDHASSLTPPELK 240
R IP+ AA+A+GA I+E H +K+ SD SL K
Sbjct: 208 GGRRDLVIPL-----------SRAAIAVGAHGIIVEVHPEPEKAL--SDGKQSLDFELFK 254
Query: 241 ALVTGIRDIEQSLG 254
LV ++ + +LG
Sbjct: 255 ELVQEMKKLADALG 268
>pdb|4GRS|A Chain A, Crystal Structure Of A Chimeric Dah7ps
pdb|4GRS|B Chain B, Crystal Structure Of A Chimeric Dah7ps
pdb|4GRS|C Chain C, Crystal Structure Of A Chimeric Dah7ps
pdb|4GRS|D Chain D, Crystal Structure Of A Chimeric Dah7ps
Length = 333
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 21/109 (19%), Positives = 49/109 (44%), Gaps = 11/109 (10%)
Query: 14 LSTKFTQSALDRPYLSPHAWANTYGQHKQHLEFSQEEYVMLQQCADQVDIMFTASAMDQV 73
+ K + +P SP+++ YG+ +++ AD+ ++ MD
Sbjct: 120 VGIKVLRGGAFKPRTSPYSFQG-YGEKALR---------WMREAADEYGLVTVTEVMDTR 169
Query: 74 SFDFLLSANVPFIKIGSGDSNNIPLIKYAASKQKPLIISTGMLPSIEHV 122
+ L++ ++IG+ +S N L+K + P+++ GM +I+ +
Sbjct: 170 HVE-LVAKYSDILQIGARNSQNFELLKEVGKVENPVLLKRGMGNTIQEL 217
>pdb|1ZCO|A Chain A, Crystal Structure Of Pyrococcus Furiosus
3-Deoxy-D-Arabino- Heptulosonate 7-Phosphate Synthase
pdb|1ZCO|B Chain B, Crystal Structure Of Pyrococcus Furiosus
3-Deoxy-D-Arabino- Heptulosonate 7-Phosphate Synthase
Length = 262
Score = 32.0 bits (71), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 21/109 (19%), Positives = 49/109 (44%), Gaps = 11/109 (10%)
Query: 14 LSTKFTQSALDRPYLSPHAWANTYGQHKQHLEFSQEEYVMLQQCADQVDIMFTASAMDQV 73
+ K + +P SP+++ YG+ +++ AD+ ++ MD
Sbjct: 49 VGIKVLRGGAFKPRTSPYSFQG-YGEKALR---------WMREAADEYGLVTVTEVMDTR 98
Query: 74 SFDFLLSANVPFIKIGSGDSNNIPLIKYAASKQKPLIISTGMLPSIEHV 122
+ L++ ++IG+ +S N L+K + P+++ GM +I+ +
Sbjct: 99 HVE-LVAKYSDILQIGARNSQNFELLKEVGKVENPVLLKRGMGNTIQEL 146
>pdb|1WVO|A Chain A, Solution Structure Of Rsgi Ruh-029, An Antifreeze Protein
Like Domain In Human N-Acetylneuraminic Acid Phosphate
Synthase Gene
Length = 79
Score = 31.6 bits (70), Expect = 0.73, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 29/53 (54%)
Query: 275 IVSSCDIQAGTVLQEFHVCIKVAEPKGICGTRYASVMGRKVNRDIRRDESIQD 327
+V+ I GT+L + +KV EPKG +++G+KV + D++I +
Sbjct: 9 VVAKVKIPEGTILTMDMLTVKVGEPKGYPPEDIFNLVGKKVLVTVEEDDTIME 61
>pdb|3NVT|A Chain A, 1.95 Angstrom Crystal Structure Of A Bifunctional
3-Deoxy-7- Phosphoheptulonate SynthaseCHORISMATE MUTASE
(AROA) FROM LISTERIA Monocytogenes Egd-E
pdb|3NVT|B Chain B, 1.95 Angstrom Crystal Structure Of A Bifunctional
3-Deoxy-7- Phosphoheptulonate SynthaseCHORISMATE MUTASE
(AROA) FROM LISTERIA Monocytogenes Egd-E
pdb|3TFC|A Chain A, 1.95 Angstrom Crystal Structure Of A Bifunctional
3-Deoxy-7- Phosphoheptulonate SynthaseCHORISMATE MUTASE
(AROA) FROM LISTERIA Monocytogenes Egd-E In Complex With
Phosphoenolpyruvate
pdb|3TFC|B Chain B, 1.95 Angstrom Crystal Structure Of A Bifunctional
3-Deoxy-7- Phosphoheptulonate SynthaseCHORISMATE MUTASE
(AROA) FROM LISTERIA Monocytogenes Egd-E In Complex With
Phosphoenolpyruvate
Length = 385
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/107 (22%), Positives = 47/107 (43%), Gaps = 15/107 (14%)
Query: 17 KFTQSALDRPYLSPHAWANTYGQHKQHLEFSQEEYVM--LQQCADQVDIMFTASAMDQVS 74
K + +P SP+ + + + L+ +EY + + + DI +V+
Sbjct: 171 KLIRGGAFKPRTSPYDFQGLGLEGLKILKRVSDEYGLGVISEIVTPADI--------EVA 222
Query: 75 FDFLLSANVPFIKIGSGDSNNIPLIKYAASKQKPLIISTGMLPSIEH 121
D+ V I+IG+ + N L+K A KP+++ G+ +IE
Sbjct: 223 LDY-----VDVIQIGARNMQNFELLKAAGRVDKPILLKRGLSATIEE 264
>pdb|1FGO|A Chain A, Lipoxygenase-1 (Soybean) At 100k, Q495a Mutant
Length = 839
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Query: 102 AASKQKPLIISTGMLPSIEHVDNIYTTVKQ--YHSNLSILHCVSAYPTPYPTVKQYHSNL 159
AA Q L G+ +I + Y V YH+ +S H ++ + P V H +L
Sbjct: 461 AAVSQVVLPAKEGVESTIWLLAKAYVIVNDSCYHALMS--HWLNTHAAMEPFVIATHRHL 518
Query: 160 SILHCVSAYPTPYHDINLNV 179
S+LH + TP++ N+N+
Sbjct: 519 SVLHPIYKLLTPHYRNNMNI 538
>pdb|3BG3|A Chain A, Crystal Structure Of Human Pyruvate Carboxylase (Missing
The Biotin Carboxylase Domain At The N-Terminus)
pdb|3BG3|B Chain B, Crystal Structure Of Human Pyruvate Carboxylase (Missing
The Biotin Carboxylase Domain At The N-Terminus)
pdb|3BG3|C Chain C, Crystal Structure Of Human Pyruvate Carboxylase (Missing
The Biotin Carboxylase Domain At The N-Terminus)
pdb|3BG3|D Chain D, Crystal Structure Of Human Pyruvate Carboxylase (Missing
The Biotin Carboxylase Domain At The N-Terminus)
Length = 718
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 13/86 (15%)
Query: 179 VIHTLRSRYPDIPIGYSGHEN---GVHVCYAAVAMGAQIIEKHFTLDKSWKGSDHASSLT 235
++ +LR R+PD+P+ H+ GV A GA +++ +D S +T
Sbjct: 295 LVSSLRDRFPDLPLHIHTHDTSGAGVAAMLACAQAGADVVD---------VAADSMSGMT 345
Query: 236 P-PELKALVTGIRDIEQSLGSPTKRM 260
P + ALV R P +R+
Sbjct: 346 SQPSMGALVACTRGTPLDTEVPMERV 371
>pdb|3BG9|A Chain A, Crystal Structure Of Human Pyruvate Carboxylase (Missing
The Biotin Carboxylase Domain At The N-Terminus) F1077a
Mutant
pdb|3BG9|B Chain B, Crystal Structure Of Human Pyruvate Carboxylase (Missing
The Biotin Carboxylase Domain At The N-Terminus) F1077a
Mutant
pdb|3BG9|C Chain C, Crystal Structure Of Human Pyruvate Carboxylase (Missing
The Biotin Carboxylase Domain At The N-Terminus) F1077a
Mutant
pdb|3BG9|D Chain D, Crystal Structure Of Human Pyruvate Carboxylase (Missing
The Biotin Carboxylase Domain At The N-Terminus) F1077a
Mutant
Length = 718
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 13/86 (15%)
Query: 179 VIHTLRSRYPDIPIGYSGHEN---GVHVCYAAVAMGAQIIEKHFTLDKSWKGSDHASSLT 235
++ +LR R+PD+P+ H+ GV A GA +++ +D S +T
Sbjct: 295 LVSSLRDRFPDLPLHIHTHDTSGAGVAAMLACAQAGADVVD---------VAADSMSGMT 345
Query: 236 P-PELKALVTGIRDIEQSLGSPTKRM 260
P + ALV R P +R+
Sbjct: 346 SQPSMGALVACTRGTPLDTEVPMERV 371
>pdb|1FGQ|A Chain A, Lipoxygenase-1 (Soybean) At 100k, Q495e Mutant
Length = 839
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
Query: 102 AASKQKPLIISTGMLPSIEHVDNIYTTVKQ--YHSNLSILHCVSAYPTPYPTVKQYHSNL 159
AA Q L G+ +I + Y V YH +S H ++ + P V H +L
Sbjct: 461 AAVSQVVLPAKEGVESTIWLLAKAYVIVNDSCYHELMS--HWLNTHAAMEPFVIATHRHL 518
Query: 160 SILHCVSAYPTPYHDINLNV 179
S+LH + TP++ N+N+
Sbjct: 519 SVLHPIYKLLTPHYRNNMNI 538
>pdb|1Y4K|A Chain A, Lipoxygenase-1 (Soybean) At 100k, N694g Mutant
Length = 839
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
Query: 102 AASKQKPLIISTGMLPSIEHVDNIYTTVKQ--YHSNLSILHCVSAYPTPYPTVKQYHSNL 159
AA Q L G+ +I + Y V YH +S H ++ + P V H +L
Sbjct: 461 AAVSQVVLPAKEGVESTIWLLAKAYVIVNDSCYHQLMS--HWLNTHAAMEPFVIATHRHL 518
Query: 160 SILHCVSAYPTPYHDINLNV 179
S+LH + TP++ N+N+
Sbjct: 519 SVLHPIYKLLTPHYRNNMNI 538
>pdb|3BNC|A Chain A, Lipoxygenase-1 (Soybean) I553g Mutant
Length = 839
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
Query: 102 AASKQKPLIISTGMLPSIEHVDNIYTTVKQ--YHSNLSILHCVSAYPTPYPTVKQYHSNL 159
AA Q L G+ +I + Y V YH +S H ++ + P V H +L
Sbjct: 461 AAVSQVVLPAKEGVESTIWLLAKAYVIVNDSCYHQLMS--HWLNTHAAMEPFVIATHRHL 518
Query: 160 SILHCVSAYPTPYHDINLNV 179
S+LH + TP++ N+N+
Sbjct: 519 SVLHPIYKLLTPHYRNNMNI 538
>pdb|3BNB|A Chain A, Lipoxygenase-1 (Soybean) I553l Mutant
Length = 839
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
Query: 102 AASKQKPLIISTGMLPSIEHVDNIYTTVKQ--YHSNLSILHCVSAYPTPYPTVKQYHSNL 159
AA Q L G+ +I + Y V YH +S H ++ + P V H +L
Sbjct: 461 AAVSQVVLPAKEGVESTIWLLAKAYVIVNDSCYHQLMS--HWLNTHAAMEPFVIATHRHL 518
Query: 160 SILHCVSAYPTPYHDINLNV 179
S+LH + TP++ N+N+
Sbjct: 519 SVLHPIYKLLTPHYRNNMNI 538
>pdb|1FGM|A Chain A, Lipoxygenase-1 (Soybean) At 100k, N694h Mutant
Length = 839
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
Query: 102 AASKQKPLIISTGMLPSIEHVDNIYTTVKQ--YHSNLSILHCVSAYPTPYPTVKQYHSNL 159
AA Q L G+ +I + Y V YH +S H ++ + P V H +L
Sbjct: 461 AAVSQVVLPAKEGVESTIWLLAKAYVIVNDSCYHQLMS--HWLNTHAAMEPFVIATHRHL 518
Query: 160 SILHCVSAYPTPYHDINLNV 179
S+LH + TP++ N+N+
Sbjct: 519 SVLHPIYKLLTPHYRNNMNI 538
>pdb|2SBL|B Chain B, The Three-Dimensional Structure Of An Arachidonic Acid 15-
Lipoxygenase
pdb|1F8N|A Chain A, Lipoxygenase-1 (Soybean) At 100k, New Refinement
pdb|1YGE|A Chain A, Lipoxygenase-1 (Soybean) At 100k
pdb|2SBL|A Chain A, The Three-Dimensional Structure Of An Arachidonic Acid 15-
Lipoxygenase
Length = 839
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
Query: 102 AASKQKPLIISTGMLPSIEHVDNIYTTVKQ--YHSNLSILHCVSAYPTPYPTVKQYHSNL 159
AA Q L G+ +I + Y V YH +S H ++ + P V H +L
Sbjct: 461 AAVSQVVLPAKEGVESTIWLLAKAYVIVNDSCYHQLMS--HWLNTHAAMEPFVIATHRHL 518
Query: 160 SILHCVSAYPTPYHDINLNV 179
S+LH + TP++ N+N+
Sbjct: 519 SVLHPIYKLLTPHYRNNMNI 538
>pdb|3BNE|A Chain A, Lipoxygenase-1 (Soybean) I553a Mutant
Length = 839
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
Query: 102 AASKQKPLIISTGMLPSIEHVDNIYTTVKQ--YHSNLSILHCVSAYPTPYPTVKQYHSNL 159
AA Q L G+ +I + Y V YH +S H ++ + P V H +L
Sbjct: 461 AAVSQVVLPAKEGVESTIWLLAKAYVIVNDSCYHQLMS--HWLNTHAAMEPFVIATHRHL 518
Query: 160 SILHCVSAYPTPYHDINLNV 179
S+LH + TP++ N+N+
Sbjct: 519 SVLHPIYKLLTPHYRNNMNI 538
>pdb|3BND|A Chain A, Lipoxygenase-1 (Soybean), I553v Mutant
Length = 839
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
Query: 102 AASKQKPLIISTGMLPSIEHVDNIYTTVKQ--YHSNLSILHCVSAYPTPYPTVKQYHSNL 159
AA Q L G+ +I + Y V YH +S H ++ + P V H +L
Sbjct: 461 AAVSQVVLPAKEGVESTIWLLAKAYVIVNDSCYHQLMS--HWLNTHAAMEPFVIATHRHL 518
Query: 160 SILHCVSAYPTPYHDINLNV 179
S+LH + TP++ N+N+
Sbjct: 519 SVLHPIYKLLTPHYRNNMNI 538
>pdb|3PZW|A Chain A, Soybean Lipoxygenase-1 - Re-Refinement
Length = 839
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
Query: 102 AASKQKPLIISTGMLPSIEHVDNIYTTVKQ--YHSNLSILHCVSAYPTPYPTVKQYHSNL 159
AA Q L G+ +I + Y V YH +S H ++ + P V H +L
Sbjct: 461 AAVSQVVLPAKEGVESTIWLLAKAYVIVNDSCYHQLMS--HWLNTHAAMEPFVIATHRHL 518
Query: 160 SILHCVSAYPTPYHDINLNV 179
S+LH + TP++ N+N+
Sbjct: 519 SVLHPIYKLLTPHYRNNMNI 538
>pdb|1FGR|A Chain A, Lipoxygenase-1 (Soybean) At 100k, Q697e Mutant
Length = 839
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
Query: 102 AASKQKPLIISTGMLPSIEHVDNIYTTVKQ--YHSNLSILHCVSAYPTPYPTVKQYHSNL 159
AA Q L G+ +I + Y V YH +S H ++ + P V H +L
Sbjct: 461 AAVSQVVLPAKEGVESTIWLLAKAYVIVNDSCYHQLMS--HWLNTHAAMEPFVIATHRHL 518
Query: 160 SILHCVSAYPTPYHDINLNV 179
S+LH + TP++ N+N+
Sbjct: 519 SVLHPIYKLLTPHYRNNMNI 538
>pdb|1FGT|A Chain A, Lipoxygenase-1 (Soybean) At 100k, Q697n Mutant
Length = 839
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
Query: 102 AASKQKPLIISTGMLPSIEHVDNIYTTVKQ--YHSNLSILHCVSAYPTPYPTVKQYHSNL 159
AA Q L G+ +I + Y V YH +S H ++ + P V H +L
Sbjct: 461 AAVSQVVLPAKEGVESTIWLLAKAYVIVNDSCYHQLMS--HWLNTHAAMEPFVIATHRHL 518
Query: 160 SILHCVSAYPTPYHDINLNV 179
S+LH + TP++ N+N+
Sbjct: 519 SVLHPIYKLLTPHYRNNMNI 538
>pdb|2CAU|A Chain A, Canavalin From Jack Bean
pdb|2CAV|A Chain A, Canavalin From Jack Bean
Length = 445
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 17/76 (22%), Positives = 35/76 (46%), Gaps = 7/76 (9%)
Query: 79 LSANVPFIKIGSGDSNNIPLIKYAASKQKPLIISTGMLPSIEHVDNIYTTVKQYHSNLSI 138
+ A PF I ++ N+ ++K+A + ++P + L S + + Y S S
Sbjct: 140 IQAGTPFYLINPDNNQNLRILKFAITFRRPGTVEDFFLSSTKR-------LPSYLSAFSK 192
Query: 139 LHCVSAYPTPYPTVKQ 154
++Y +PY ++Q
Sbjct: 193 NFLEASYDSPYDEIEQ 208
>pdb|1DGR|A Chain A, Refined Crystal Structure Of Canavalin From Jack Bean
pdb|1DGR|B Chain B, Refined Crystal Structure Of Canavalin From Jack Bean
pdb|1DGR|C Chain C, Refined Crystal Structure Of Canavalin From Jack Bean
pdb|1DGW|A Chain A, Structure Of The Rhombohedral Crystal Of Canavalin From
Jack Bean
Length = 178
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 17/76 (22%), Positives = 35/76 (46%), Gaps = 7/76 (9%)
Query: 79 LSANVPFIKIGSGDSNNIPLIKYAASKQKPLIISTGMLPSIEHVDNIYTTVKQYHSNLSI 138
+ A PF I ++ N+ ++K+A + ++P + L S + + Y S S
Sbjct: 95 IQAGTPFYLINPDNNQNLRILKFAITFRRPGTVEDFFLSSTKR-------LPSYLSAFSK 147
Query: 139 LHCVSAYPTPYPTVKQ 154
++Y +PY ++Q
Sbjct: 148 NFLEASYDSPYDEIEQ 163
>pdb|1CAU|A Chain A, Determination Of Three Crystal Structures Of Canavalin By
Molecular Replacement
pdb|1CAV|A Chain A, The Three-Dimensional Structure Of Canavalin From Jack
Bean (Canavalia Ensiformis)
pdb|1CAW|A Chain A, Determination Of Three Crystal Structures Of Canavalin By
Molecular Replacement
pdb|1CAX|A Chain A, Determination Of Three Crystal Structures Of Canavalin By
Molecular Replacement
pdb|1CAX|C Chain C, Determination Of Three Crystal Structures Of Canavalin By
Molecular Replacement
pdb|1CAX|E Chain E, Determination Of Three Crystal Structures Of Canavalin By
Molecular Replacement
Length = 181
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 17/76 (22%), Positives = 35/76 (46%), Gaps = 7/76 (9%)
Query: 79 LSANVPFIKIGSGDSNNIPLIKYAASKQKPLIISTGMLPSIEHVDNIYTTVKQYHSNLSI 138
+ A PF I ++ N+ ++K+A + ++P + L S + + Y S S
Sbjct: 97 IQAGTPFYLINPDNNQNLRILKFAITFRRPGTVEDFFLSSTKR-------LPSYLSAFSK 149
Query: 139 LHCVSAYPTPYPTVKQ 154
++Y +PY ++Q
Sbjct: 150 NFLEASYDSPYDEIEQ 165
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,891,301
Number of Sequences: 62578
Number of extensions: 404215
Number of successful extensions: 809
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 777
Number of HSP's gapped (non-prelim): 35
length of query: 335
length of database: 14,973,337
effective HSP length: 99
effective length of query: 236
effective length of database: 8,778,115
effective search space: 2071635140
effective search space used: 2071635140
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)