BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17999
(335 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9NR45|SIAS_HUMAN Sialic acid synthase OS=Homo sapiens GN=NANS PE=1 SV=2
Length = 359
Score = 306 bits (783), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 152/331 (45%), Positives = 211/331 (63%), Gaps = 24/331 (7%)
Query: 1 ECGADCVKFQKSCLSTKFTQSALDRPYLSPHAWANTYGQHKQHLEFSQEEYVMLQQCADQ 60
ECGADC KFQKS L KF + AL+RPY S H+W TYG+HK+HLEFS ++Y LQ+ A++
Sbjct: 45 ECGADCAKFQKSELEFKFNRKALERPYTSKHSWGKTYGEHKRHLEFSHDQYRELQRYAEE 104
Query: 61 VDIMFTASAMDQVSFDFLLSANVPFIKIGSGDSNNIPLIKYAASKQKPLIISTGMLPSIE 120
V I FTAS MD+++ +FL NVPF K+GSGD+NN P ++ A K +P++IS+GM +
Sbjct: 105 VGIFFTASGMDEMAVEFLHELNVPFFKVGSGDTNNFPYLEKTAKKGRPMVISSGM----Q 160
Query: 121 HVDNIYTTVKQYHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYPTPYHDINLNVI 180
+D T+KQ Y VK + N L C SAYP D+NL VI
Sbjct: 161 SMD----TMKQV----------------YQIVKPLNPNFCFLQCTSAYPLQPEDVNLRVI 200
Query: 181 HTLRSRYPDIPIGYSGHENGVHVCYAAVAMGAQIIEKHFTLDKSWKGSDHASSLTPPELK 240
+ +PDIPIGYSGHE G+ + AAVA+GA+++E+H TLDK+WKGSDH++SL P EL
Sbjct: 201 SEYQKLFPDIPIGYSGHETGIAISVAAVALGAKVLERHITLDKTWKGSDHSASLEPGELA 260
Query: 241 ALVTGIRDIEQSLGSPTKRMQVSEAPCYAKLGKCIVSSCDIQAGTVLQEFHVCIKVAEPK 300
LV +R +E++LGSPTK++ E C KLGK +V+ I GT+L + +KV EPK
Sbjct: 261 ELVRSVRLVERALGSPTKQLLPCEMACNEKLGKSVVAKVKIPEGTILTMDMLTVKVGEPK 320
Query: 301 GICGTRYASVMGRKVNRDIRRDESIQDIDLD 331
G +++G+KV + D++I + +D
Sbjct: 321 GYPPEDIFNLVGKKVLVTVEEDDTIMEELVD 351
>sp|Q58465|Y1065_METJA Uncharacterized protein MJ1065 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ1065 PE=4 SV=1
Length = 337
Score = 184 bits (467), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 116/328 (35%), Positives = 174/328 (53%), Gaps = 42/328 (12%)
Query: 1 ECGADCVKFQKSCLSTKFTQSALDRPYLSPHAWANTYGQHKQHLEFSQEEYVMLQQCADQ 60
+CGAD +KFQ + T+ + + + Y + + LE S+EE+ L++ A++
Sbjct: 43 KCGADAIKFQ-----SYHTEDFISK--------KSEYYELFKSLELSEEEFYELKEYAEK 89
Query: 61 VDIMFTASAMDQVSFDFLLSANVPFIKIGSGDSNNIPLIKYAASKQKPLIISTGMLPSIE 120
+ IMF ++ +D D L NVP KI SGD PL++ A KP+I+STGM
Sbjct: 90 IGIMFISTPLDLKYVDILNKMNVPAFKIASGDLTFYPLLEKVAKTGKPVILSTGM----S 145
Query: 121 HVDNIYTTVKQYHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYPTPYHDINLNVI 180
+ I+ VK +N C ++ +LHC+S+YPTPY D+NLN I
Sbjct: 146 DIGEIWEAVKVLENN----GC---------------RDIILLHCISSYPTPYEDVNLNAI 186
Query: 181 HTLRSRYPDIPIGYSGHENGVHVCYAAVAMGAQIIEKHFTLDKSWKGSDHASSLTPPELK 240
TL+S + +IP+GYS H G+ +VA+GA +IEKHFTLDK+ +G DHA S P E K
Sbjct: 187 KTLKSIF-NIPVGYSDHTLGILAPVVSVALGADVIEKHFTLDKNMEGPDHALSADPEEFK 245
Query: 241 ALVTGIRDIEQSLGSPTKRMQVSEAPCYAKLGKCIVSSCDIQAGTVLQEFHVCIKVAEPK 300
+V IR +E+ LGS K SE + + IV+ +I+ G L ++ K P
Sbjct: 246 EMVNNIRLVEKMLGSGEKIPMPSERDVIVEARRSIVAKRNIKKGEYLSVDNISFK--RPG 303
Query: 301 GICGTRYASVMGRKVNRDIRRDESIQDI 328
T+Y S++ +NR I+ D+ DI
Sbjct: 304 RGIETKYLSII---LNRKIKNDKEEDDI 328
>sp|P39625|SPSE_BACSU Spore coat polysaccharide biosynthesis protein SpsE OS=Bacillus
subtilis (strain 168) GN=spsE PE=1 SV=1
Length = 373
Score = 119 bits (299), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 90/302 (29%), Positives = 141/302 (46%), Gaps = 42/302 (13%)
Query: 42 QHLEFSQEEYVMLQQCADQVDIMFTASAMDQVSFDFLLSANVPFIKIGSGDSNNIPLIKY 101
Q +E E + L + ++F ++ D+ S D L S + KI S + N++PL+KY
Sbjct: 82 QSMEMPAEWILPLLDYCREKQVIFLSTVCDEGSADLLQSTSPSAFKIASYEINHLPLLKY 141
Query: 102 AASKQKPLIISTGMLPSIEHVDNIYTTVKQYHSNLSILHCVSAYPTPYPTVKQYHSNLSI 161
A +P+I ST I V + T++ +N ++I
Sbjct: 142 VARLNRPMIFSTAGA-EISDVHEAWRTIRAEGNN----------------------QIAI 178
Query: 162 LHCVSAYPTPYHDINLNVIHTLRSRYPDIPIGYSGH-ENGVHVCYAAVAMGAQIIEKHFT 220
+HCV+ YP P NL+VI L + +P+ IG+S H E+ AAV +GA++IEKHFT
Sbjct: 179 MHCVAKYPAPPEYSNLSVIPMLAAAFPEAVIGFSDHSEHPTEAPCAAVRLGAKLIEKHFT 238
Query: 221 LDKSWKGSDHASSLTPPELKALVTGIRDIEQS-------------LGSPTKRMQVSEAPC 267
+DK+ G+DH+ +L P ELK +V GIR E LGS K E
Sbjct: 239 IDKNLPGADHSFALNPDELKEMVDGIRKTEAELKQGITKPVSEKLLGSSYKTTTAIEGEI 298
Query: 268 YAKLGKCIVSSCDIQAGTVLQEFHVCI--KVAEPKGICGTRYASVM--GRKVNRDIRRDE 323
+ I ++ IQ G E ++ + +P+G+ R+ ++ G + RDI D
Sbjct: 299 RNFAYRGIFTTAPIQKGEAFSEDNIAVLRPGQKPQGLH-PRFFELLTSGVRAVRDIPADT 357
Query: 324 SI 325
I
Sbjct: 358 GI 359
>sp|Q939J8|PSEI_CAMJJ Pseudaminic acid synthase OS=Campylobacter jejuni subsp. jejuni
serotype O:23/36 (strain 81-176) GN=pseI PE=3 SV=1
Length = 343
Score = 108 bits (270), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 83/304 (27%), Positives = 143/304 (47%), Gaps = 47/304 (15%)
Query: 29 SPHAWANTYGQHKQHLEFSQEEYVMLQQCADQVDIMFTASAMDQVSFDFLLSANVPFIKI 88
+P+ W H Q E +Q E ++ C +S + +FL + KI
Sbjct: 84 TPYEW------HSQIFETAQNEGIL---C--------FSSPFAKEDIEFLKRFDPIAYKI 126
Query: 89 GSGDSNNIPLIKYAASKQKPLIISTGMLPSIEHVDNIYTTVKQYHSNLSILHCVSAYPTP 148
S ++N+ ++ A ++KP I+STG + + E + I K+
Sbjct: 127 ASFEANDENFVRLIAKEKKPTIVSTG-IATEEELFKICEIFKE----------------- 168
Query: 149 YPTVKQYHSNLSILHCVSAYPTPYHDINLNVIHTLRSRYPDIPIGYSGHENGVHVCYAAV 208
+ + +L L C SAYPT D+NL I +L+ ++ ++ +G S H G AV
Sbjct: 169 -----EKNPDLIFLKCTSAYPTAIEDMNLKGIVSLKEKF-NVEVGLSDHSFGFLAPVMAV 222
Query: 209 AMGAQIIEKHFTLDKSWKGSDHASSLTPPELKALVTGIRDIEQSLGSPTKRMQVSEAPCY 268
A+GA++IEKHF LDKS + D SL E KA+V +R E +LG ++ + E
Sbjct: 223 ALGARVIEKHFMLDKSIESEDSKFSLDFDEFKAMVDAVRQAESALGDG--KLDLDEKALK 280
Query: 269 AK-LGKCIVSSCDIQAGTVLQEFHVCIKVAEPK-GICGTRYASVMGRKVNRDIRRDESIQ 326
+ + + +S DI+ G + E +V K P G+ Y ++G+K ++DI ++++
Sbjct: 281 NRVFARSLYASKDIKKGEIFSEENV--KSVRPSFGLHPKFYQELLGKKASKDIEFGDALK 338
Query: 327 DIDL 330
+ D
Sbjct: 339 ESDF 342
>sp|Q0P8U0|PSEI_CAMJE Pseudaminic acid synthase OS=Campylobacter jejuni subsp. jejuni
serotype O:2 (strain NCTC 11168) GN=pseI PE=1 SV=1
Length = 343
Score = 105 bits (261), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 82/304 (26%), Positives = 142/304 (46%), Gaps = 47/304 (15%)
Query: 29 SPHAWANTYGQHKQHLEFSQEEYVMLQQCADQVDIMFTASAMDQVSFDFLLSANVPFIKI 88
+P+ W H Q E +Q E ++ C +S + +FL + KI
Sbjct: 84 TPYEW------HSQIFETAQNEGIL---C--------FSSPFAKEDVEFLKRFDPIAYKI 126
Query: 89 GSGDSNNIPLIKYAASKQKPLIISTGMLPSIEHVDNIYTTVKQYHSNLSILHCVSAYPTP 148
S ++N+ ++ A ++KP I+STG + + E + I K+
Sbjct: 127 ASFEANDENFVRLIAKEKKPTIVSTG-IATEEELFKICEIFKE----------------- 168
Query: 149 YPTVKQYHSNLSILHCVSAYPTPYHDINLNVIHTLRSRYPDIPIGYSGHENGVHVCYAAV 208
+ + +L L C S YPT D+NL I +L+ ++ ++ +G S H G AV
Sbjct: 169 -----EKNPDLVFLKCTSTYPTAIEDMNLKGIVSLKEKF-NVEVGLSDHSFGFLAPVMAV 222
Query: 209 AMGAQIIEKHFTLDKSWKGSDHASSLTPPELKALVTGIRDIEQSLGSPTKRMQVSEAPCY 268
A+GA++IEKHF LDKS + D SL E KA+V +R E +LG ++ + E
Sbjct: 223 ALGARVIEKHFMLDKSIESEDSKFSLDFDEFKAMVDAVRQAESALGDG--KLDLDEKVLK 280
Query: 269 AK-LGKCIVSSCDIQAGTVLQEFHVCIKVAEPK-GICGTRYASVMGRKVNRDIRRDESIQ 326
+ + + +S DI+ G + E +V K P G+ Y ++G+K ++DI+ ++++
Sbjct: 281 NRVFARSLYASKDIKKGEMFSEENV--KSVRPSFGLHPKFYQELLGKKASKDIKFGDALK 338
Query: 327 DIDL 330
D
Sbjct: 339 QGDF 342
>sp|O24980|PSEI_HELPY Pseudaminic acid synthase OS=Helicobacter pylori (strain ATCC
700392 / 26695) GN=pseI PE=3 SV=1
Length = 340
Score = 95.5 bits (236), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 90/334 (26%), Positives = 144/334 (43%), Gaps = 30/334 (8%)
Query: 1 ECGADCVKFQKSCLSTKFTQSALDRPYLSPHAW--ANTYGQHKQHLEFSQEEYVMLQQCA 58
E GAD VK Q S S D + W N Y + Q E + L + A
Sbjct: 31 ESGADFVKLQTYTPSCMTLNSKEDPFIIQGTLWDKENLYELY-QKASTPLEWHAELFELA 89
Query: 59 DQVDIMFTASAMDQVSFDFLLSANVPFIKIGSGDSNNIPLIKYAASKQKPLIISTGMLPS 118
++D+ +S + + L S N P KI S + ++ LI+ AA QKP+I+S+G+
Sbjct: 90 RKLDLGIFSSPFSSQALELLESLNCPMYKIASFEIVDLDLIEKAARTQKPIILSSGIATH 149
Query: 119 IEHVDNIYTTVKQYHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYPTPYHDINLN 178
E D I S+ V+ + ++++L CVSAYP+ D NL
Sbjct: 150 TELQDAI-----------SLCRRVNNF------------DITLLKCVSAYPSKIEDANLL 186
Query: 179 VIHTLRSRYPDIPIGYSGHENGVHVCYAAVAMGAQIIEKHFTLDKSWKGSDHASSLTPPE 238
+ L + + G S H G A +GA +IEKHF L+KS + D A S+
Sbjct: 187 SMVKLGEIF-GVKFGLSDHTIGSLCPILATTLGASMIEKHFILNKSLQTPDSAFSMDFNG 245
Query: 239 LKALVTGIRDIEQSLGSPTKRMQVSEAPCYAKLGKCIVSSCDIQAGTVLQEFHVCIKVAE 298
K++V I+ +LG R+ + + DIQ G L E + IK
Sbjct: 246 FKSMVEAIKQSVLALGEEEPRINPKTLEKRRFFARSLFVIKDIQKGEALTENN--IKALR 303
Query: 299 PK-GICGTRYASVMGRKVNRDIRRDESIQDIDLD 331
P G+ Y ++G+K ++ ++ + + D++
Sbjct: 304 PNLGLHPKFYKEILGQKASKFLKANTPLSADDIE 337
>sp|Q9WYH8|AROF_THEMA Phospho-2-dehydro-3-deoxyheptonate aldolase OS=Thermotoga maritima
(strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099)
GN=aroF PE=1 SV=1
Length = 338
Score = 39.7 bits (91), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 61/254 (24%), Positives = 106/254 (41%), Gaps = 48/254 (18%)
Query: 12 SCLSTKFTQSALDRPYLSPHAWANTYGQHKQHLEFSQEEYVMLQQCADQVDIMFTASAMD 71
S L K + +P SP+++ G ++ LE+ L++ AD+ + A+
Sbjct: 118 SELGVKVLRGGAYKPRTSPYSFQ---GLGEKGLEY-------LREAADKYGMYVVTEALG 167
Query: 72 QVSFDFL--LSANVPFIKIGSGDSNNIPLIKYAASKQKPLIISTGMLPSIEHVDNIYTTV 129
+ D L ++ I+IG+ ++ N L+ A S KP+++ G + +IE +
Sbjct: 168 E---DDLPKVAEYADIIQIGARNAQNFRLLSKAGSYNKPVLLKRGFMNTIEE----FLLS 220
Query: 130 KQY---HSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYPTPYHDINLNVI----HT 182
+Y N I+ C T K + L I SA P + +L ++ H+
Sbjct: 221 AEYIANSGNTKIILCERGIRT---FEKATRNTLDI----SAVPIIRKESHLPILVDPSHS 273
Query: 183 LRSRYPDIPIGYSGHENGVHVCYAAVAMGAQ--IIEKHFTLDKSWKGSDHASSLTPPELK 240
R IP+ AA+A+GA I+E H +K+ SD SL K
Sbjct: 274 GGRRDLVIPL-----------SRAAIAVGAHGIIVEVHPEPEKAL--SDGKQSLDFELFK 320
Query: 241 ALVTGIRDIEQSLG 254
LV ++ + +LG
Sbjct: 321 ELVQEMKKLADALG 334
>sp|Q2RIT8|TRPF_MOOTA N-(5'-phosphoribosyl)anthranilate isomerase OS=Moorella
thermoacetica (strain ATCC 39073) GN=trpF PE=3 SV=1
Length = 223
Score = 37.7 bits (86), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 77 FLLSANVPFIKIGSGDSNNIPLIKYAASKQKPLIISTGMLPSIEHVDNIYTTVKQYHSNL 136
FLL A VP G+G + N L++ AA+ KP+I++ G+ P E+V V Y ++
Sbjct: 121 FLLDAWVPGKAGGTGTTFNWELVRGAATGGKPVILAGGLTP--ENVGAAIQLVHPYAVDV 178
Query: 137 S 137
S
Sbjct: 179 S 179
>sp|P39912|AROG_BACSU Protein AroA(G) OS=Bacillus subtilis (strain 168) GN=aroA PE=1 SV=1
Length = 358
Score = 36.6 bits (83), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 41/199 (20%), Positives = 80/199 (40%), Gaps = 24/199 (12%)
Query: 53 MLQQCADQVDIMFTASAMDQVSFDFLLSANVPFIKIGSGDSNNIPLIKYAASKQKPLIIS 112
+L++ AD+ D+ + + + L + I+IG+ + N L+K A + +KP+++
Sbjct: 173 ILKRVADEFDLAVISEIVTPAHIEEALDY-IDVIQIGARNMQNFELLKAAGAVKKPVLLK 231
Query: 113 TGMLPSIEHVDNIYTTVKQYHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYPTPY 172
G+ +I N + N I+ C ++ Y + +SA P
Sbjct: 232 RGLAATISEFINAAEYI-MSQGNDQIILCERG-------IRTYETATRNTLDISAVPILK 283
Query: 173 HDINL----NVIHTLRSRYPDIPIGYSGHENGVHVCYAAVAMGAQIIEKHFTLDKSWKGS 228
+ +L +V H+ R +P AA+A+GA + D S S
Sbjct: 284 QETHLPVFVDVTHSTGRRDLLLP-----------TAKAALAIGADGVMAEVHPDPSVALS 332
Query: 229 DHASSLTPPELKALVTGIR 247
D A + PE + + ++
Sbjct: 333 DSAQQMAIPEFEKWLNELK 351
>sp|Q29RK2|PYC_BOVIN Pyruvate carboxylase, mitochondrial OS=Bos taurus GN=PC PE=2 SV=2
Length = 1178
Score = 31.6 bits (70), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 13/86 (15%)
Query: 179 VIHTLRSRYPDIPIGYSGHEN---GVHVCYAAVAMGAQIIEKHFTLDKSWKGSDHASSLT 235
++ +LR R+PD+P+ H+ GV A GA +++ +D S +T
Sbjct: 755 LVSSLRDRFPDLPLHIHTHDTSGAGVAAMLACAHAGADVVD---------VAADSMSGMT 805
Query: 236 P-PELKALVTGIRDIEQSLGSPTKRM 260
P + ALV R G P +R+
Sbjct: 806 SQPSMGALVACTRGTPLDTGVPLERV 831
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.133 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 124,149,235
Number of Sequences: 539616
Number of extensions: 5116596
Number of successful extensions: 11857
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 11827
Number of HSP's gapped (non-prelim): 18
length of query: 335
length of database: 191,569,459
effective HSP length: 118
effective length of query: 217
effective length of database: 127,894,771
effective search space: 27753165307
effective search space used: 27753165307
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)