Query psy17999
Match_columns 335
No_of_seqs 141 out of 1425
Neff 5.8
Searched_HMMs 46136
Date Fri Aug 16 19:40:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17999.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17999hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2089 SpsE Sialic acid synth 100.0 2.9E-93 6.2E-98 677.9 27.7 305 1-331 41-347 (347)
2 TIGR03569 NeuB_NnaB N-acetylne 100.0 3.8E-92 8.1E-97 683.4 29.5 301 1-325 27-329 (329)
3 TIGR03586 PseI pseudaminic aci 100.0 2.1E-89 4.5E-94 663.7 29.7 297 1-325 28-327 (327)
4 PF03102 NeuB: NeuB family; I 100.0 1.3E-80 2.8E-85 580.2 20.9 233 1-258 7-241 (241)
5 TIGR01361 DAHP_synth_Bsub phos 100.0 1.5E-48 3.3E-53 368.3 19.5 178 44-248 71-259 (260)
6 PRK12595 bifunctional 3-deoxy- 100.0 1.6E-47 3.6E-52 375.8 23.1 184 44-254 164-358 (360)
7 PRK08673 3-deoxy-7-phosphohept 100.0 3.1E-46 6.7E-51 363.0 22.6 206 1-255 118-334 (335)
8 PRK13397 3-deoxy-7-phosphohept 100.0 8.9E-44 1.9E-48 332.9 21.8 176 44-248 61-249 (250)
9 PRK13396 3-deoxy-7-phosphohept 100.0 6.5E-44 1.4E-48 348.0 20.6 186 45-256 148-344 (352)
10 PRK13398 3-deoxy-7-phosphohept 100.0 1.1E-43 2.3E-48 336.3 21.0 184 45-253 74-266 (266)
11 COG2876 AroA 3-deoxy-D-arabino 100.0 1.8E-33 3.9E-38 262.1 18.4 184 45-254 92-285 (286)
12 TIGR01362 KDO8P_synth 3-deoxy- 100.0 9.8E-32 2.1E-36 250.9 22.7 192 25-254 45-257 (258)
13 PRK05198 2-dehydro-3-deoxyphos 100.0 1.1E-31 2.4E-36 251.3 22.3 180 45-252 63-263 (264)
14 PRK12457 2-dehydro-3-deoxyphos 100.0 1.4E-31 3.1E-36 252.2 23.2 184 46-255 70-274 (281)
15 PLN03033 2-dehydro-3-deoxyphos 100.0 5E-31 1.1E-35 248.6 21.5 194 24-255 58-277 (290)
16 PF00793 DAHP_synth_1: DAHP sy 99.9 1.5E-21 3.2E-26 185.7 12.2 182 46-252 71-268 (270)
17 COG2877 KdsA 3-deoxy-D-manno-o 99.8 4.4E-19 9.5E-24 163.6 16.1 177 48-252 74-270 (279)
18 PRK09261 phospho-2-dehydro-3-d 99.3 1.5E-11 3.3E-16 120.3 12.5 149 48-220 120-307 (349)
19 PF08666 SAF: SAF domain; Int 99.0 1.9E-10 4.1E-15 85.2 4.0 59 273-331 2-63 (63)
20 TIGR00034 aroFGH phospho-2-deh 99.0 7.1E-09 1.5E-13 101.5 15.6 152 48-226 115-307 (344)
21 PRK12755 phospho-2-dehydro-3-d 98.9 7.9E-09 1.7E-13 101.4 11.9 141 58-222 134-310 (353)
22 TIGR03170 flgA_cterm flagella 98.4 1.1E-07 2.3E-12 79.8 2.0 58 275-332 2-62 (122)
23 smart00858 SAF This domain fam 98.2 4.7E-07 1E-11 66.8 1.7 57 273-331 2-64 (64)
24 PRK12858 tagatose 1,6-diphosph 97.7 0.0002 4.4E-09 70.7 10.6 105 49-172 143-291 (340)
25 PRK12618 flgA flagellar basal 97.3 0.00011 2.5E-09 63.9 2.3 61 271-332 18-78 (141)
26 PRK06005 flgA flagellar basal 97.2 0.0002 4.4E-09 63.5 2.1 61 272-332 33-97 (160)
27 PF13144 SAF_2: SAF-like 97.1 0.00019 4E-09 64.9 1.6 63 270-332 73-136 (196)
28 PRK07018 flgA flagellar basal 97.1 0.00025 5.5E-09 66.4 2.2 63 270-332 108-173 (235)
29 COG1261 FlgA Flagellar basal b 97.0 0.00047 1E-08 64.3 3.3 60 272-331 95-157 (220)
30 cd00452 KDPG_aldolase KDPG and 96.9 0.059 1.3E-06 48.5 16.0 128 47-215 39-168 (190)
31 cd04732 HisA HisA. Phosphorib 96.9 0.03 6.6E-07 51.4 14.3 138 50-213 61-214 (234)
32 PRK13957 indole-3-glycerol-pho 96.8 0.016 3.4E-07 55.1 11.9 81 46-127 135-222 (247)
33 PRK00278 trpC indole-3-glycero 96.7 0.023 4.9E-07 54.1 12.2 81 46-127 144-231 (260)
34 cd00958 DhnA Class I fructose- 96.7 0.02 4.3E-07 52.9 11.3 83 49-133 109-208 (235)
35 PRK12617 flgA flagellar basal 96.6 0.0012 2.6E-08 61.4 2.7 63 270-332 87-152 (214)
36 PRK08227 autoinducer 2 aldolas 96.6 0.025 5.4E-07 54.2 11.4 81 49-134 127-221 (264)
37 TIGR03151 enACPred_II putative 96.6 0.087 1.9E-06 51.3 15.5 133 46-213 45-185 (307)
38 cd07939 DRE_TIM_NifV Streptomy 96.6 0.047 1E-06 51.5 13.1 145 47-222 45-216 (259)
39 PRK06804 flgA flagellar basal 96.6 0.0011 2.4E-08 63.3 1.9 62 271-332 135-199 (261)
40 TIGR03177 pilus_cpaB Flp pilus 96.5 0.0048 1E-07 58.5 6.1 64 269-332 33-99 (261)
41 cd04740 DHOD_1B_like Dihydroor 96.4 0.56 1.2E-05 44.8 19.2 184 49-254 76-285 (296)
42 PRK08195 4-hyroxy-2-oxovalerat 96.3 0.04 8.7E-07 54.4 11.3 142 48-217 65-220 (337)
43 cd07944 DRE_TIM_HOA_like 4-hyd 96.3 0.055 1.2E-06 51.6 11.8 144 46-217 56-214 (266)
44 PRK15452 putative protease; Pr 96.3 0.062 1.3E-06 55.1 12.6 105 45-190 42-159 (443)
45 PRK12822 phospho-2-dehydro-3-d 96.3 0.011 2.4E-07 58.6 6.9 79 49-128 124-202 (356)
46 TIGR03217 4OH_2_O_val_ald 4-hy 96.2 0.065 1.4E-06 52.9 12.3 142 47-216 63-218 (333)
47 PRK07226 fructose-bisphosphate 96.2 0.11 2.4E-06 49.4 13.4 84 48-133 125-225 (267)
48 PF01408 GFO_IDH_MocA: Oxidore 96.2 0.047 1E-06 44.4 9.5 75 53-132 38-112 (120)
49 PRK08515 flgA flagellar basal 96.2 0.0017 3.6E-08 60.6 0.7 62 271-332 99-162 (222)
50 PRK01130 N-acetylmannosamine-6 96.2 0.037 8E-07 50.8 9.5 78 49-127 105-193 (221)
51 PRK07259 dihydroorotate dehydr 96.1 0.28 6.1E-06 47.1 15.9 185 50-255 79-289 (301)
52 cd03174 DRE_TIM_metallolyase D 96.1 0.13 2.8E-06 47.8 13.0 131 63-222 67-224 (265)
53 cd02810 DHOD_DHPD_FMN Dihydroo 96.1 0.37 8E-06 45.8 16.2 166 46-216 80-270 (289)
54 cd07940 DRE_TIM_IPMS 2-isoprop 96.0 0.18 4E-06 47.8 13.7 144 47-217 45-220 (268)
55 PRK09427 bifunctional indole-3 95.9 0.16 3.6E-06 52.2 13.8 79 45-125 142-228 (454)
56 PRK09250 fructose-bisphosphate 95.9 0.15 3.2E-06 50.8 12.7 81 49-129 179-304 (348)
57 cd00331 IGPS Indole-3-glycerol 95.9 0.1 2.2E-06 47.7 11.0 82 46-128 105-193 (217)
58 cd07943 DRE_TIM_HOA 4-hydroxy- 95.9 0.097 2.1E-06 49.5 11.2 145 48-222 62-219 (263)
59 PRK13585 1-(5-phosphoribosyl)- 95.9 0.32 7E-06 44.9 14.4 136 49-213 63-217 (241)
60 PRK09140 2-dehydro-3-deoxy-6-p 95.8 0.48 1E-05 43.6 15.3 124 47-213 45-174 (206)
61 PRK12786 flgA flagellar basal 95.8 0.0042 9.2E-08 61.4 1.7 61 272-332 192-255 (338)
62 cd07945 DRE_TIM_CMS Leptospira 95.8 0.26 5.7E-06 47.4 14.0 145 46-217 44-222 (280)
63 PF00218 IGPS: Indole-3-glycer 95.8 0.056 1.2E-06 51.5 9.0 79 46-125 142-227 (254)
64 TIGR03572 WbuZ glycosyl amidat 95.7 0.46 1E-05 43.8 14.8 142 47-213 59-222 (232)
65 COG1830 FbaB DhnA-type fructos 95.7 0.23 4.9E-06 47.7 12.8 85 49-134 130-232 (265)
66 COG0134 TrpC Indole-3-glycerol 95.6 0.068 1.5E-06 51.0 9.0 82 45-127 139-227 (254)
67 TIGR00007 phosphoribosylformim 95.6 0.72 1.6E-05 42.3 15.6 136 50-213 60-213 (230)
68 PRK14024 phosphoribosyl isomer 95.6 0.53 1.1E-05 44.1 14.8 139 50-213 63-217 (241)
69 PRK00043 thiE thiamine-phospha 95.5 0.83 1.8E-05 41.0 15.5 125 50-213 53-183 (212)
70 PRK05692 hydroxymethylglutaryl 95.5 0.27 5.7E-06 47.6 12.8 139 52-217 62-230 (287)
71 PRK07094 biotin synthase; Prov 95.4 2.6 5.6E-05 40.8 19.6 170 46-239 100-304 (323)
72 PRK11613 folP dihydropteroate 95.4 1.6 3.6E-05 42.2 17.9 53 59-112 87-139 (282)
73 PRK06552 keto-hydroxyglutarate 95.4 0.78 1.7E-05 42.6 15.1 107 47-193 48-159 (213)
74 PRK11858 aksA trans-homoaconit 95.4 0.32 7E-06 48.7 13.5 146 46-222 50-222 (378)
75 cd04729 NanE N-acetylmannosami 95.3 0.13 2.8E-06 47.2 9.6 78 49-127 109-197 (219)
76 TIGR00735 hisF imidazoleglycer 95.2 0.76 1.6E-05 43.3 14.7 166 46-244 58-247 (254)
77 cd04730 NPD_like 2-Nitropropan 95.2 1.6 3.5E-05 39.9 16.6 110 72-214 70-181 (236)
78 PRK06852 aldolase; Validated 95.2 0.34 7.4E-06 47.4 12.5 82 49-130 154-255 (304)
79 PF01791 DeoC: DeoC/LacD famil 95.1 0.048 1E-06 50.6 6.3 83 49-133 112-222 (236)
80 TIGR00433 bioB biotin syntheta 95.1 1.3 2.8E-05 42.0 16.2 149 48-221 97-278 (296)
81 PRK08649 inosine 5-monophospha 95.1 0.16 3.4E-06 51.0 10.2 77 50-127 175-276 (368)
82 PRK13587 1-(5-phosphoribosyl)- 95.1 1 2.2E-05 42.2 15.0 135 49-213 63-216 (234)
83 PRK00748 1-(5-phosphoribosyl)- 95.0 0.98 2.1E-05 41.4 14.6 137 49-213 61-215 (233)
84 TIGR03551 F420_cofH 7,8-dideme 95.0 0.71 1.5E-05 45.4 14.3 67 176-246 257-331 (343)
85 TIGR00423 radical SAM domain p 95.0 1.9 4.2E-05 41.7 17.1 182 46-246 66-295 (309)
86 cd07937 DRE_TIM_PC_TC_5S Pyruv 94.8 0.43 9.3E-06 45.7 12.0 118 71-217 93-223 (275)
87 cd07941 DRE_TIM_LeuA3 Desulfob 94.8 0.81 1.8E-05 43.7 13.8 39 179-217 185-226 (273)
88 PRK12399 tagatose 1,6-diphosph 94.7 0.47 1E-05 46.8 12.0 94 49-145 142-278 (324)
89 PRK01130 N-acetylmannosamine-6 94.7 1.8 3.8E-05 39.7 15.4 132 51-214 45-198 (221)
90 TIGR01496 DHPS dihydropteroate 94.6 0.71 1.5E-05 43.9 12.8 61 51-112 63-124 (257)
91 TIGR01232 lacD tagatose 1,6-di 94.6 0.77 1.7E-05 45.3 13.0 94 49-145 143-279 (325)
92 TIGR02090 LEU1_arch isopropylm 94.5 0.65 1.4E-05 46.2 12.8 120 70-217 72-215 (363)
93 cd02801 DUS_like_FMN Dihydrour 94.5 0.6 1.3E-05 42.5 11.6 132 59-214 51-209 (231)
94 COG0673 MviM Predicted dehydro 94.4 0.26 5.7E-06 47.2 9.6 78 50-132 39-117 (342)
95 TIGR02660 nifV_homocitr homoci 94.4 1.1 2.4E-05 44.6 14.3 41 179-222 176-219 (365)
96 PLN02746 hydroxymethylglutaryl 94.3 0.66 1.4E-05 46.2 12.3 121 70-217 122-272 (347)
97 PRK12581 oxaloacetate decarbox 94.3 0.58 1.3E-05 48.4 12.1 146 45-218 69-238 (468)
98 PRK02083 imidazole glycerol ph 94.3 1.6 3.5E-05 40.9 14.2 162 48-244 60-245 (253)
99 PRK14040 oxaloacetate decarbox 94.2 0.56 1.2E-05 49.9 12.3 115 74-217 102-229 (593)
100 cd04729 NanE N-acetylmannosami 94.2 2.6 5.6E-05 38.6 15.3 111 73-213 83-201 (219)
101 cd04731 HisF The cyclase subun 94.2 2.4 5.1E-05 39.3 15.1 141 48-213 57-218 (243)
102 cd07938 DRE_TIM_HMGL 3-hydroxy 94.2 0.66 1.4E-05 44.4 11.6 129 62-217 66-224 (274)
103 PLN02460 indole-3-glycerol-pho 94.1 0.43 9.3E-06 47.4 10.3 81 45-126 213-307 (338)
104 PRK14042 pyruvate carboxylase 94.1 0.89 1.9E-05 48.4 13.4 144 45-217 60-228 (596)
105 PRK01033 imidazole glycerol ph 94.1 2.1 4.6E-05 40.5 14.7 140 46-213 58-221 (258)
106 PF04131 NanE: Putative N-acet 94.1 0.18 3.8E-06 46.2 7.0 78 49-127 79-164 (192)
107 PRK04161 tagatose 1,6-diphosph 93.9 0.88 1.9E-05 44.9 12.0 95 49-146 144-281 (329)
108 cd04722 TIM_phosphate_binding 93.9 3.3 7.2E-05 35.4 14.7 65 52-116 47-124 (200)
109 PRK05286 dihydroorotate dehydr 93.8 1.3 2.7E-05 43.9 13.2 171 61-250 136-340 (344)
110 PRK13802 bifunctional indole-3 93.8 0.47 1E-05 51.3 10.8 81 46-127 144-231 (695)
111 cd04739 DHOD_like Dihydroorota 93.8 7.3 0.00016 38.2 18.7 174 53-251 90-289 (325)
112 PRK12330 oxaloacetate decarbox 93.7 0.7 1.5E-05 48.2 11.5 145 46-217 62-231 (499)
113 TIGR03128 RuMP_HxlA 3-hexulose 93.7 1.3 2.8E-05 39.9 12.0 79 46-125 86-175 (206)
114 PRK07535 methyltetrahydrofolat 93.6 4.5 9.7E-05 38.6 16.1 164 51-256 57-248 (261)
115 TIGR03151 enACPred_II putative 93.5 0.56 1.2E-05 45.7 10.0 74 53-127 100-181 (307)
116 PRK13753 dihydropteroate synth 93.5 2.7 5.8E-05 40.8 14.4 59 53-112 67-125 (279)
117 PF00682 HMGL-like: HMGL-like 93.4 0.52 1.1E-05 43.4 9.2 142 51-222 46-215 (237)
118 TIGR00737 nifR3_yhdG putative 93.4 1.7 3.6E-05 42.3 12.9 103 89-215 109-219 (319)
119 cd02803 OYE_like_FMN_family Ol 93.4 0.45 9.7E-06 46.0 9.0 119 1-127 152-301 (327)
120 cd00381 IMPDH IMPDH: The catal 93.3 2.7 5.9E-05 41.3 14.4 139 46-213 67-221 (325)
121 PRK09282 pyruvate carboxylase 93.3 0.82 1.8E-05 48.6 11.4 145 46-218 58-229 (592)
122 PRK07455 keto-hydroxyglutarate 93.2 1.9 4.2E-05 38.9 12.3 89 66-193 68-156 (187)
123 TIGR01949 AroFGH_arch predicte 93.2 0.94 2E-05 42.7 10.6 83 49-133 123-221 (258)
124 cd00405 PRAI Phosphoribosylant 93.1 6.5 0.00014 35.5 17.0 76 45-123 34-112 (203)
125 cd02803 OYE_like_FMN_family Ol 93.1 6.8 0.00015 37.8 16.7 144 44-216 129-309 (327)
126 cd02809 alpha_hydroxyacid_oxid 93.0 2.8 6.1E-05 40.4 13.9 148 75-255 135-291 (299)
127 cd04728 ThiG Thiazole synthase 92.9 0.75 1.6E-05 43.8 9.4 78 49-127 107-195 (248)
128 PRK14041 oxaloacetate decarbox 92.8 1.3 2.8E-05 45.9 11.8 146 46-219 57-229 (467)
129 PRK07565 dihydroorotate dehydr 92.4 7.2 0.00016 38.2 16.1 185 46-254 84-294 (334)
130 TIGR01108 oadA oxaloacetate de 92.4 0.96 2.1E-05 48.0 10.4 118 73-217 95-223 (582)
131 cd07948 DRE_TIM_HCS Saccharomy 92.3 1.6 3.5E-05 41.6 10.9 40 180-222 176-218 (262)
132 PRK00208 thiG thiazole synthas 92.2 1 2.2E-05 42.9 9.4 91 49-146 107-208 (250)
133 TIGR00693 thiE thiamine-phosph 92.1 8.2 0.00018 34.3 15.0 126 50-213 45-175 (196)
134 TIGR01037 pyrD_sub1_fam dihydr 92.1 12 0.00025 35.9 17.3 187 49-254 77-288 (300)
135 cd04738 DHOD_2_like Dihydrooro 92.0 4.2 9.1E-05 39.8 13.8 148 61-216 127-307 (327)
136 TIGR01182 eda Entner-Doudoroff 92.0 2.7 5.8E-05 38.9 11.7 83 46-133 85-170 (204)
137 PTZ00314 inosine-5'-monophosph 92.0 1.2 2.6E-05 46.3 10.5 79 49-128 268-365 (495)
138 cd04726 KGPDC_HPS 3-Keto-L-gul 92.0 4.6 9.9E-05 36.0 13.0 141 46-220 39-190 (202)
139 cd00564 TMP_TenI Thiamine mono 91.9 7.9 0.00017 33.6 15.7 126 50-214 44-174 (196)
140 cd04723 HisA_HisF Phosphoribos 91.9 9.7 0.00021 35.4 15.5 134 50-213 66-213 (233)
141 TIGR01304 IMP_DH_rel_2 IMP deh 91.8 1.4 3E-05 44.3 10.4 76 51-127 177-275 (369)
142 cd00959 DeoC 2-deoxyribose-5-p 91.8 1.2 2.6E-05 40.6 9.1 75 49-126 105-193 (203)
143 TIGR00284 dihydropteroate synt 91.7 6.4 0.00014 41.2 15.3 143 50-219 195-352 (499)
144 PRK12756 phospho-2-dehydro-3-d 91.6 0.53 1.1E-05 46.8 7.0 71 58-129 132-202 (348)
145 PRK02412 aroD 3-dehydroquinate 91.6 1.4 3.1E-05 41.6 9.8 112 47-187 120-249 (253)
146 PRK10415 tRNA-dihydrouridine s 91.5 6.8 0.00015 38.4 14.6 100 89-213 111-219 (321)
147 PRK06552 keto-hydroxyglutarate 91.4 1.6 3.5E-05 40.4 9.6 83 46-133 93-177 (213)
148 PRK05458 guanosine 5'-monophos 91.3 6 0.00013 39.2 14.0 145 46-220 69-234 (326)
149 TIGR01302 IMP_dehydrog inosine 91.2 1.6 3.5E-05 44.7 10.3 80 48-128 250-348 (450)
150 cd00331 IGPS Indole-3-glycerol 91.1 12 0.00025 34.1 16.0 126 55-213 65-196 (217)
151 cd02911 arch_FMN Archeal FMN-b 91.0 12 0.00026 35.0 15.2 138 47-216 57-218 (233)
152 cd02940 DHPD_FMN Dihydropyrimi 91.0 14 0.0003 35.6 16.0 150 62-216 99-279 (299)
153 PF01081 Aldolase: KDPG and KH 90.9 1.1 2.3E-05 41.2 7.8 83 46-133 85-170 (196)
154 TIGR00736 nifR3_rel_arch TIM-b 90.9 14 0.00031 34.7 16.1 140 45-213 51-215 (231)
155 PLN02274 inosine-5'-monophosph 90.9 1.8 3.9E-05 45.2 10.4 81 47-128 273-372 (505)
156 PRK00311 panB 3-methyl-2-oxobu 90.8 5 0.00011 38.6 12.6 82 53-134 6-109 (264)
157 PRK15447 putative protease; Pr 90.8 2.9 6.2E-05 40.6 11.2 102 45-187 44-153 (301)
158 TIGR02320 PEP_mutase phosphoen 90.8 6.7 0.00015 38.0 13.6 168 55-248 2-207 (285)
159 PLN03228 methylthioalkylmalate 90.8 5.6 0.00012 41.7 13.8 139 75-249 112-280 (503)
160 cd04730 NPD_like 2-Nitropropan 90.8 2.2 4.8E-05 39.0 9.9 76 51-127 91-176 (236)
161 TIGR01304 IMP_DH_rel_2 IMP deh 90.7 9.5 0.00021 38.4 15.0 80 46-127 116-207 (369)
162 PLN02321 2-isopropylmalate syn 90.6 3.6 7.9E-05 44.2 12.6 138 75-248 114-280 (632)
163 PLN02623 pyruvate kinase 90.6 1.8 4E-05 45.9 10.2 87 47-134 302-412 (581)
164 CHL00200 trpA tryptophan synth 90.4 17 0.00037 34.8 17.7 166 1-213 40-226 (263)
165 PRK12331 oxaloacetate decarbox 90.4 2.3 5E-05 43.8 10.6 146 46-218 58-229 (448)
166 PRK06015 keto-hydroxyglutarate 90.4 3.6 7.8E-05 38.0 10.8 82 46-132 81-165 (201)
167 TIGR00262 trpA tryptophan synt 90.4 17 0.00036 34.6 17.7 173 1-213 35-222 (256)
168 cd00739 DHPS DHPS subgroup of 90.4 16 0.00035 34.7 15.6 59 55-113 68-127 (257)
169 KOG2741|consensus 90.3 1.4 3.1E-05 43.8 8.6 80 50-132 42-122 (351)
170 PRK10206 putative oxidoreducta 90.3 1.5 3.3E-05 43.0 8.8 57 76-132 58-114 (344)
171 cd00381 IMPDH IMPDH: The catal 90.1 2.9 6.2E-05 41.1 10.6 78 49-127 120-217 (325)
172 cd04261 AAK_AKii-LysC-BS AAK_A 90.0 12 0.00027 34.7 14.3 38 85-122 3-48 (239)
173 PLN02389 biotin synthase 90.0 18 0.00039 36.5 16.3 142 48-213 152-324 (379)
174 COG0826 Collagenase and relate 89.9 1.5 3.2E-05 43.7 8.5 68 44-116 44-123 (347)
175 PLN02274 inosine-5'-monophosph 89.7 6.4 0.00014 41.2 13.2 153 46-222 212-386 (505)
176 PRK09389 (R)-citramalate synth 89.6 5.1 0.00011 41.7 12.4 51 167-222 167-220 (488)
177 TIGR01182 eda Entner-Doudoroff 89.5 4.6 9.9E-05 37.4 10.8 106 48-193 44-152 (204)
178 cd02932 OYE_YqiM_FMN Old yello 89.3 23 0.00049 34.7 16.9 139 44-216 142-318 (336)
179 PRK07114 keto-hydroxyglutarate 89.2 2.3 5.1E-05 39.8 8.8 71 46-116 96-167 (222)
180 PRK08444 hypothetical protein; 89.2 23 0.0005 35.3 16.3 176 47-246 111-336 (353)
181 PF00224 PK: Pyruvate kinase, 89.2 0.74 1.6E-05 45.7 5.7 88 47-134 200-310 (348)
182 TIGR03128 RuMP_HxlA 3-hexulose 89.2 15 0.00033 32.8 13.9 137 46-214 38-182 (206)
183 cd02810 DHOD_DHPD_FMN Dihydroo 89.0 3.6 7.8E-05 39.0 10.1 92 105-221 97-199 (289)
184 PRK05458 guanosine 5'-monophos 88.8 4.5 9.9E-05 40.0 10.8 75 53-128 130-222 (326)
185 cd00945 Aldolase_Class_I Class 88.7 2.4 5.1E-05 37.0 8.1 76 50-127 102-192 (201)
186 PRK07998 gatY putative fructos 88.7 2.7 6E-05 40.7 9.1 79 49-127 115-220 (283)
187 cd04736 MDH_FMN Mandelate dehy 88.7 2.8 6.2E-05 42.0 9.4 79 46-127 223-309 (361)
188 TIGR00742 yjbN tRNA dihydrouri 88.5 11 0.00024 37.0 13.4 133 46-213 64-218 (318)
189 cd00452 KDPG_aldolase KDPG and 88.5 4.5 9.7E-05 36.3 9.9 73 50-124 85-159 (190)
190 PTZ00314 inosine-5'-monophosph 88.5 4.5 9.8E-05 42.1 11.2 129 62-214 233-369 (495)
191 PRK06256 biotin synthase; Vali 88.3 20 0.00042 34.9 14.9 44 177-221 258-305 (336)
192 PRK00915 2-isopropylmalate syn 88.2 11 0.00025 39.3 13.9 149 44-248 21-189 (513)
193 PRK08649 inosine 5-monophospha 88.1 18 0.0004 36.3 14.8 144 47-213 116-280 (368)
194 cd02930 DCR_FMN 2,4-dienoyl-Co 88.0 22 0.00049 35.0 15.3 135 44-215 125-303 (353)
195 cd04734 OYE_like_3_FMN Old yel 88.0 27 0.00059 34.4 15.9 145 44-216 129-313 (343)
196 PRK06843 inosine 5-monophospha 88.0 12 0.00025 38.3 13.4 121 69-213 152-280 (404)
197 PRK00915 2-isopropylmalate syn 87.9 9.6 0.00021 39.9 13.2 147 47-222 51-230 (513)
198 PRK13523 NADPH dehydrogenase N 87.9 23 0.0005 35.0 15.2 136 44-216 130-303 (337)
199 PRK05718 keto-hydroxyglutarate 87.8 7.3 0.00016 36.1 11.0 79 49-132 95-176 (212)
200 PRK08195 4-hyroxy-2-oxovalerat 87.7 14 0.0003 36.6 13.5 155 43-248 19-184 (337)
201 cd02801 DUS_like_FMN Dihydrour 87.6 3.1 6.7E-05 37.8 8.4 52 75-127 144-203 (231)
202 PRK05567 inosine 5'-monophosph 87.5 4.6 9.9E-05 41.8 10.4 80 48-128 254-352 (486)
203 PRK09234 fbiC FO synthase; Rev 87.5 9.6 0.00021 42.4 13.4 180 46-246 587-818 (843)
204 PRK02083 imidazole glycerol ph 87.5 5.1 0.00011 37.5 10.0 53 75-128 159-218 (253)
205 cd00423 Pterin_binding Pterin 87.5 26 0.00056 33.1 16.0 63 51-113 64-127 (258)
206 TIGR01306 GMP_reduct_2 guanosi 87.3 13 0.00029 36.7 13.0 145 46-215 66-224 (321)
207 PRK13111 trpA tryptophan synth 87.3 6.2 0.00013 37.7 10.4 83 45-128 125-221 (258)
208 PRK04147 N-acetylneuraminate l 87.2 22 0.00049 34.0 14.4 151 44-247 52-224 (293)
209 TIGR02151 IPP_isom_2 isopenten 87.1 9.1 0.0002 37.7 11.9 127 51-218 72-210 (333)
210 cd04735 OYE_like_4_FMN Old yel 87.1 4.1 8.8E-05 40.4 9.5 118 1-128 155-305 (353)
211 cd07940 DRE_TIM_IPMS 2-isoprop 86.9 5.6 0.00012 37.7 10.0 43 197-249 140-184 (268)
212 KOG4201|consensus 86.9 2.8 6.1E-05 39.5 7.5 76 45-124 169-254 (289)
213 cd04726 KGPDC_HPS 3-Keto-L-gul 86.6 11 0.00024 33.5 11.2 77 47-125 88-175 (202)
214 TIGR00977 LeuA_rel 2-isopropyl 86.6 8.6 0.00019 40.4 11.9 170 44-222 18-232 (526)
215 PRK00043 thiE thiamine-phospha 86.4 24 0.00051 31.5 13.8 126 74-246 26-158 (212)
216 cd04740 DHOD_1B_like Dihydroor 86.3 8.6 0.00019 36.7 11.0 89 105-218 88-186 (296)
217 PRK11579 putative oxidoreducta 86.3 2.8 6.1E-05 40.9 7.8 57 76-132 58-114 (346)
218 PRK12999 pyruvate carboxylase; 86.1 6 0.00013 45.4 11.2 114 75-217 633-765 (1146)
219 PRK06806 fructose-bisphosphate 86.0 12 0.00027 36.1 11.9 106 85-253 17-127 (281)
220 cd04743 NPD_PKS 2-Nitropropane 85.9 29 0.00063 34.3 14.5 143 46-217 37-193 (320)
221 cd00429 RPE Ribulose-5-phospha 85.8 13 0.00029 32.9 11.4 136 46-214 44-190 (211)
222 PRK06843 inosine 5-monophospha 85.8 4.5 9.8E-05 41.2 9.1 80 48-128 179-277 (404)
223 cd02932 OYE_YqiM_FMN Old yello 85.7 5.2 0.00011 39.2 9.3 119 1-127 165-310 (336)
224 cd07939 DRE_TIM_NifV Streptomy 85.7 14 0.0003 34.8 11.8 147 44-249 15-180 (259)
225 cd06556 ICL_KPHMT Members of t 85.6 18 0.00039 34.2 12.6 201 54-293 4-214 (240)
226 TIGR00973 leuA_bact 2-isopropy 85.6 18 0.00039 37.7 13.6 137 77-249 31-187 (494)
227 PRK07114 keto-hydroxyglutarate 85.4 5.3 0.00011 37.4 8.7 86 67-192 76-161 (222)
228 cd02930 DCR_FMN 2,4-dienoyl-Co 85.3 4.7 0.0001 39.9 8.9 117 1-127 148-296 (353)
229 cd02809 alpha_hydroxyacid_oxid 85.3 6.5 0.00014 37.9 9.7 76 51-127 161-247 (299)
230 cd00377 ICL_PEPM Members of th 85.3 6.6 0.00014 36.9 9.5 136 56-253 3-140 (243)
231 cd00740 MeTr MeTr subgroup of 85.3 34 0.00075 32.4 15.9 76 48-123 55-140 (252)
232 PRK06739 pyruvate kinase; Vali 85.0 8.5 0.00018 38.5 10.5 88 47-134 189-300 (352)
233 TIGR02660 nifV_homocitr homoci 84.9 14 0.0003 36.8 12.0 145 45-248 19-182 (365)
234 PRK13575 3-dehydroquinate dehy 84.7 7 0.00015 36.8 9.3 111 47-186 110-237 (238)
235 COG0159 TrpA Tryptophan syntha 84.6 40 0.00086 32.6 15.4 181 26-249 53-262 (265)
236 PRK13352 thiamine biosynthesis 84.4 7.5 0.00016 39.7 9.8 140 47-250 204-353 (431)
237 cd06289 PBP1_MalI_like Ligand- 84.3 17 0.00038 32.6 11.6 85 49-134 16-118 (268)
238 TIGR03249 KdgD 5-dehydro-4-deo 84.3 27 0.00058 33.6 13.4 156 44-247 53-226 (296)
239 cd03174 DRE_TIM_metallolyase D 84.3 6.5 0.00014 36.4 8.9 62 177-250 118-188 (265)
240 PRK15108 biotin synthase; Prov 84.3 46 0.00099 33.0 17.4 168 47-245 109-307 (345)
241 TIGR00973 leuA_bact 2-isopropy 84.2 10 0.00022 39.5 11.1 172 44-222 18-227 (494)
242 cd04246 AAK_AK-DapG-like AAK_A 84.2 35 0.00076 31.6 14.0 39 85-123 3-49 (239)
243 COG3684 LacD Tagatose-1,6-bisp 84.0 11 0.00023 36.5 10.1 95 49-147 147-268 (306)
244 cd04739 DHOD_like Dihydroorota 84.0 16 0.00035 35.8 11.9 90 105-221 98-198 (325)
245 PRK02227 hypothetical protein; 84.0 31 0.00067 32.8 13.2 154 64-250 2-180 (238)
246 cd04722 TIM_phosphate_binding 83.7 9.4 0.0002 32.6 9.1 77 51-128 101-191 (200)
247 PRK11320 prpB 2-methylisocitra 83.6 24 0.00052 34.4 12.7 67 53-130 8-74 (292)
248 TIGR03699 mena_SCO4550 menaqui 83.6 27 0.00059 34.0 13.3 179 46-245 102-325 (340)
249 PRK08445 hypothetical protein; 83.5 41 0.00088 33.4 14.6 176 45-246 102-331 (348)
250 TIGR01302 IMP_dehydrog inosine 83.5 15 0.00032 37.7 11.8 122 69-214 223-352 (450)
251 PRK05926 hypothetical protein; 83.4 17 0.00038 36.4 12.0 183 46-246 128-358 (370)
252 PRK07360 FO synthase subunit 2 83.4 29 0.00064 34.6 13.6 154 71-246 162-353 (371)
253 cd02931 ER_like_FMN Enoate red 83.3 7.3 0.00016 39.1 9.3 117 1-127 161-325 (382)
254 PRK12344 putative alpha-isopro 83.3 12 0.00027 39.2 11.3 51 167-222 182-235 (524)
255 TIGR03217 4OH_2_O_val_ald 4-hy 83.1 31 0.00067 34.1 13.5 156 43-249 18-184 (333)
256 cd01545 PBP1_SalR Ligand-bindi 83.0 15 0.00033 33.1 10.6 63 49-111 16-85 (270)
257 PRK07259 dihydroorotate dehydr 83.0 9.8 0.00021 36.5 9.8 90 104-218 89-189 (301)
258 TIGR00190 thiC thiamine biosyn 83.0 6.5 0.00014 40.0 8.7 140 47-250 201-350 (423)
259 TIGR03700 mena_SCO4494 putativ 83.0 42 0.0009 33.2 14.4 184 45-246 108-337 (351)
260 PRK08318 dihydropyrimidine deh 82.8 57 0.0012 32.9 16.2 149 62-216 99-280 (420)
261 PLN02321 2-isopropylmalate syn 82.6 24 0.00051 38.1 13.2 174 44-222 103-321 (632)
262 PF02581 TMP-TENI: Thiamine mo 82.6 14 0.0003 32.8 9.9 125 49-213 43-172 (180)
263 cd04731 HisF The cyclase subun 82.5 8.8 0.00019 35.5 9.0 52 75-127 155-213 (243)
264 PRK09140 2-dehydro-3-deoxy-6-p 82.4 14 0.0003 34.0 10.1 83 47-134 89-174 (206)
265 PLN02762 pyruvate kinase compl 82.3 12 0.00025 39.4 10.5 88 47-134 227-339 (509)
266 PRK05904 coproporphyrinogen II 82.3 34 0.00073 34.0 13.5 74 46-131 70-150 (353)
267 PRK07695 transcriptional regul 82.3 37 0.00081 30.5 13.2 135 42-214 34-173 (201)
268 PRK05718 keto-hydroxyglutarate 82.2 17 0.00036 33.7 10.6 25 168-193 135-159 (212)
269 cd04234 AAK_AK AAK_AK: Amino A 82.1 30 0.00066 31.8 12.4 32 85-116 3-41 (227)
270 PRK05437 isopentenyl pyrophosp 81.9 23 0.0005 35.2 12.2 126 52-218 80-217 (352)
271 PRK00278 trpC indole-3-glycero 81.9 48 0.001 31.5 15.8 131 50-213 99-235 (260)
272 PRK13523 NADPH dehydrogenase N 81.9 16 0.00034 36.2 10.9 118 1-126 153-294 (337)
273 PRK00748 1-(5-phosphoribosyl)- 81.8 13 0.00028 33.9 9.7 54 73-127 150-210 (233)
274 cd04737 LOX_like_FMN L-Lactate 81.7 6.4 0.00014 39.3 8.2 78 46-127 208-296 (351)
275 PLN02591 tryptophan synthase 81.3 14 0.0003 35.1 10.0 83 45-128 114-210 (250)
276 cd04733 OYE_like_2_FMN Old yel 81.3 8.4 0.00018 37.8 8.7 117 1-127 160-312 (338)
277 PLN02495 oxidoreductase, actin 81.1 66 0.0014 32.6 17.4 86 47-134 96-209 (385)
278 PRK11197 lldD L-lactate dehydr 81.1 10 0.00023 38.3 9.5 81 45-128 231-321 (381)
279 TIGR01037 pyrD_sub1_fam dihydr 81.0 12 0.00026 35.9 9.5 92 105-222 89-193 (300)
280 PF00072 Response_reg: Respons 81.0 13 0.00029 28.7 8.4 79 48-127 8-91 (112)
281 PRK06015 keto-hydroxyglutarate 80.9 13 0.00028 34.4 9.2 104 50-193 42-148 (201)
282 TIGR00683 nanA N-acetylneurami 80.8 38 0.00082 32.5 13.0 150 44-246 49-221 (290)
283 cd00951 KDGDH 5-dehydro-4-deox 80.8 54 0.0012 31.4 16.4 155 44-246 48-220 (289)
284 TIGR00007 phosphoribosylformim 80.8 12 0.00025 34.3 9.0 78 49-127 106-209 (230)
285 PLN02334 ribulose-phosphate 3- 80.8 25 0.00054 32.4 11.3 141 44-215 50-199 (229)
286 PTZ00081 enolase; Provisional 80.7 14 0.00031 38.0 10.4 84 46-129 281-372 (439)
287 cd00954 NAL N-Acetylneuraminic 80.7 11 0.00023 36.2 9.1 27 106-133 70-97 (288)
288 COG3745 CpaB Flp pilus assembl 80.7 1.5 3.2E-05 42.2 3.1 62 270-331 44-114 (276)
289 TIGR01768 GGGP-family geranylg 80.5 52 0.0011 30.9 13.8 138 46-213 39-203 (223)
290 PRK11815 tRNA-dihydrouridine s 80.4 48 0.001 32.6 13.7 132 47-213 75-228 (333)
291 cd02933 OYE_like_FMN Old yello 80.4 21 0.00045 35.3 11.2 132 1-145 163-317 (338)
292 PRK13209 L-xylulose 5-phosphat 80.4 19 0.00041 33.7 10.5 87 45-131 53-176 (283)
293 cd07943 DRE_TIM_HOA 4-hydroxy- 80.3 38 0.00083 31.9 12.6 154 44-248 17-181 (263)
294 cd06267 PBP1_LacI_sugar_bindin 80.2 33 0.00072 30.2 11.7 82 49-131 16-113 (264)
295 PRK14114 1-(5-phosphoribosyl)- 80.2 41 0.00088 31.7 12.6 121 51-200 63-199 (241)
296 TIGR01064 pyruv_kin pyruvate k 80.2 9.2 0.0002 39.7 8.9 88 47-134 195-306 (473)
297 cd02811 IDI-2_FMN Isopentenyl- 80.0 16 0.00036 35.8 10.3 77 50-127 166-275 (326)
298 PF03060 NMO: Nitronate monoox 79.9 61 0.0013 31.8 14.2 134 75-246 106-241 (330)
299 cd04736 MDH_FMN Mandelate dehy 79.7 16 0.00034 36.8 10.1 96 95-220 224-322 (361)
300 TIGR01303 IMP_DH_rel_1 IMP deh 79.7 13 0.00028 38.6 9.8 78 50-128 252-349 (475)
301 PRK13210 putative L-xylulose 5 79.7 19 0.00041 33.6 10.2 87 45-131 48-171 (284)
302 PRK06512 thiamine-phosphate py 79.6 53 0.0011 30.5 14.5 74 45-126 50-128 (221)
303 PRK06635 aspartate kinase; Rev 79.6 26 0.00057 35.0 11.8 40 85-124 5-52 (404)
304 PRK06247 pyruvate kinase; Prov 79.1 11 0.00024 39.2 9.1 86 47-134 197-304 (476)
305 TIGR03855 NAD_NadX aspartate d 79.1 12 0.00025 35.2 8.5 74 53-132 14-88 (229)
306 cd06285 PBP1_LacI_like_7 Ligan 79.1 44 0.00096 30.1 12.3 84 49-134 16-115 (265)
307 TIGR03572 WbuZ glycosyl amidat 79.0 17 0.00038 33.3 9.6 52 75-127 159-217 (232)
308 PRK05567 inosine 5'-monophosph 79.0 39 0.00085 35.0 13.2 122 68-213 226-355 (486)
309 TIGR01303 IMP_DH_rel_1 IMP deh 78.8 40 0.00086 35.1 13.1 127 62-213 217-352 (475)
310 PRK11815 tRNA-dihydrouridine s 78.7 19 0.00041 35.4 10.3 52 75-127 157-225 (333)
311 PRK04165 acetyl-CoA decarbonyl 78.7 25 0.00055 36.4 11.5 81 48-131 140-223 (450)
312 PRK08207 coproporphyrinogen II 78.3 45 0.00097 34.8 13.3 74 46-131 232-316 (488)
313 COG5016 Pyruvate/oxaloacetate 78.1 24 0.00051 36.3 10.7 198 26-251 41-277 (472)
314 PRK10014 DNA-binding transcrip 77.8 42 0.0009 31.8 12.2 86 49-134 81-183 (342)
315 cd01311 PDC_hydrolase 2-pyrone 77.7 36 0.00078 31.8 11.5 145 73-254 84-247 (263)
316 cd06303 PBP1_LuxPQ_Quorum_Sens 77.6 34 0.00073 31.5 11.2 64 49-112 17-90 (280)
317 PLN02461 Probable pyruvate kin 77.6 20 0.00043 37.7 10.5 86 49-134 220-328 (511)
318 PTZ00066 pyruvate kinase; Prov 77.5 19 0.00041 37.9 10.3 88 47-134 234-344 (513)
319 TIGR00262 trpA tryptophan synt 77.4 24 0.00053 33.4 10.3 81 46-127 124-218 (256)
320 TIGR01761 thiaz-red thiazoliny 77.4 11 0.00024 37.4 8.3 74 51-132 38-114 (343)
321 TIGR02151 IPP_isom_2 isopenten 77.4 25 0.00054 34.6 10.7 77 50-127 167-274 (333)
322 PTZ00300 pyruvate kinase; Prov 77.3 12 0.00026 38.7 8.7 88 47-134 171-281 (454)
323 cd06273 PBP1_GntR_like_1 This 77.3 44 0.00096 30.0 11.7 85 49-134 16-117 (268)
324 PRK10550 tRNA-dihydrouridine s 77.3 26 0.00056 34.3 10.7 99 89-213 109-219 (312)
325 PRK10550 tRNA-dihydrouridine s 77.2 44 0.00096 32.7 12.3 128 55-219 17-169 (312)
326 cd01575 PBP1_GntR Ligand-bindi 77.2 46 0.00099 29.8 11.7 62 49-111 16-83 (268)
327 COG3010 NanE Putative N-acetyl 77.2 20 0.00043 33.6 9.2 79 49-128 114-201 (229)
328 PRK13111 trpA tryptophan synth 77.2 69 0.0015 30.5 14.9 110 1-127 37-163 (258)
329 COG4091 Predicted homoserine d 77.1 1.1 2.4E-05 44.9 1.2 59 274-334 349-415 (438)
330 COG0352 ThiE Thiamine monophos 77.1 63 0.0014 30.0 14.5 126 48-213 51-181 (211)
331 cd07937 DRE_TIM_PC_TC_5S Pyruv 77.1 61 0.0013 30.9 13.0 37 202-248 153-189 (275)
332 PF01081 Aldolase: KDPG and KH 77.1 11 0.00025 34.5 7.7 86 67-192 65-151 (196)
333 cd04732 HisA HisA. Phosphorib 77.0 23 0.00051 32.2 9.8 52 75-127 152-210 (234)
334 cd03332 LMO_FMN L-Lactate 2-mo 77.0 11 0.00023 38.3 8.0 78 46-127 240-328 (383)
335 PRK00115 hemE uroporphyrinogen 76.9 31 0.00067 33.9 11.2 82 45-131 220-310 (346)
336 cd00408 DHDPS-like Dihydrodipi 76.8 15 0.00032 34.7 8.6 28 106-134 66-94 (281)
337 PRK02615 thiamine-phosphate py 76.7 85 0.0019 31.4 14.4 131 44-213 179-317 (347)
338 cd01537 PBP1_Repressors_Sugar_ 76.7 52 0.0011 28.9 12.0 86 49-134 16-119 (264)
339 PF00682 HMGL-like: HMGL-like 76.7 5.9 0.00013 36.4 5.8 151 45-250 10-179 (237)
340 PRK05437 isopentenyl pyrophosp 76.4 22 0.00048 35.4 10.1 77 50-127 174-281 (352)
341 cd00945 Aldolase_Class_I Class 76.3 17 0.00038 31.4 8.4 86 106-216 48-147 (201)
342 PLN02898 HMP-P kinase/thiamin- 76.0 82 0.0018 32.6 14.5 131 45-213 330-467 (502)
343 PRK07807 inosine 5-monophospha 76.0 21 0.00046 37.1 10.2 81 47-128 252-351 (479)
344 PRK09249 coproporphyrinogen II 75.8 71 0.0015 32.6 13.9 74 46-131 116-198 (453)
345 cd04733 OYE_like_2_FMN Old yel 75.8 83 0.0018 30.8 16.3 144 44-216 137-320 (338)
346 PF00977 His_biosynth: Histidi 75.7 14 0.00031 34.2 8.1 136 49-213 60-215 (229)
347 PRK11303 DNA-binding transcrip 75.7 48 0.001 31.2 11.9 62 50-111 79-146 (328)
348 cd04734 OYE_like_3_FMN Old yel 75.7 15 0.00032 36.3 8.6 84 40-127 187-305 (343)
349 cd07948 DRE_TIM_HCS Saccharomy 75.5 32 0.0007 32.7 10.6 147 44-249 17-182 (262)
350 cd01310 TatD_DNAse TatD like p 75.4 62 0.0013 29.1 16.1 112 47-196 38-174 (251)
351 PRK06354 pyruvate kinase; Prov 75.4 15 0.00032 39.3 9.0 87 47-134 202-313 (590)
352 PRK09206 pyruvate kinase; Prov 75.4 15 0.00033 38.2 8.8 87 47-134 196-307 (470)
353 PLN02493 probable peroxisomal 75.3 22 0.00047 35.9 9.7 80 45-128 210-300 (367)
354 PLN02424 ketopantoate hydroxym 75.3 75 0.0016 31.7 13.2 78 54-131 27-125 (332)
355 PRK05628 coproporphyrinogen II 75.0 67 0.0015 31.8 13.2 74 46-131 73-155 (375)
356 PRK06801 hypothetical protein; 75.0 25 0.00054 34.2 9.8 76 49-127 115-224 (286)
357 cd00408 DHDPS-like Dihydrodipi 74.9 75 0.0016 29.9 15.8 151 44-247 45-218 (281)
358 COG0800 Eda 2-keto-3-deoxy-6-p 74.6 32 0.00069 32.2 9.9 113 46-187 90-205 (211)
359 PLN02979 glycolate oxidase 74.5 24 0.00051 35.6 9.7 79 45-127 209-298 (366)
360 cd04742 NPD_FabD 2-Nitropropan 74.5 72 0.0016 32.8 13.3 45 46-90 48-103 (418)
361 cd01292 metallo-dependent_hydr 74.5 62 0.0013 28.7 13.7 130 49-213 66-228 (275)
362 PLN02535 glycolate oxidase 74.2 26 0.00056 35.3 9.9 79 45-127 209-298 (364)
363 PRK11858 aksA trans-homoaconit 74.2 35 0.00076 34.2 11.0 36 203-248 150-185 (378)
364 TIGR02317 prpB methylisocitrat 74.2 21 0.00046 34.6 9.1 81 53-134 4-103 (285)
365 cd06298 PBP1_CcpA_like Ligand- 74.2 51 0.0011 29.6 11.2 81 49-131 16-113 (268)
366 PLN03231 putative alpha-galact 74.2 8.5 0.00018 38.6 6.5 39 75-113 169-214 (357)
367 TIGR00737 nifR3_yhdG putative 74.0 23 0.00051 34.3 9.5 52 75-127 153-212 (319)
368 PRK04302 triosephosphate isome 74.0 32 0.00069 31.6 9.9 80 46-126 98-192 (223)
369 cd00288 Pyruvate_Kinase Pyruva 74.0 15 0.00032 38.3 8.4 87 47-134 198-308 (480)
370 cd02911 arch_FMN Archeal FMN-b 73.9 32 0.00068 32.2 9.9 79 47-127 124-211 (233)
371 PRK08208 coproporphyrinogen II 73.8 98 0.0021 31.4 14.2 65 191-256 199-266 (430)
372 COG0159 TrpA Tryptophan syntha 73.8 26 0.00057 33.8 9.4 83 45-128 130-226 (265)
373 cd06282 PBP1_GntR_like_2 Ligan 73.6 20 0.00043 32.1 8.4 83 49-131 16-113 (266)
374 PF03060 NMO: Nitronate monoox 73.5 19 0.00041 35.3 8.7 75 52-127 126-210 (330)
375 TIGR02814 pfaD_fam PfaD family 73.5 44 0.00095 34.6 11.6 46 46-91 53-109 (444)
376 cd06284 PBP1_LacI_like_6 Ligan 73.4 43 0.00094 29.9 10.5 61 49-111 16-82 (267)
377 PRK12702 mannosyl-3-phosphogly 73.3 19 0.0004 35.4 8.4 46 95-146 23-68 (302)
378 TIGR02090 LEU1_arch isopropylm 73.2 42 0.0009 33.5 11.2 37 202-248 145-181 (363)
379 PRK14847 hypothetical protein; 73.2 68 0.0015 32.0 12.4 33 188-222 239-274 (333)
380 cd06557 KPHMT-like Ketopantoat 73.1 14 0.00031 35.2 7.5 81 54-134 4-106 (254)
381 PRK08999 hypothetical protein; 72.9 90 0.0019 29.8 13.2 125 50-213 176-303 (312)
382 cd00951 KDGDH 5-dehydro-4-deox 72.8 41 0.00089 32.2 10.7 27 106-134 69-96 (289)
383 cd04724 Tryptophan_synthase_al 72.7 28 0.00061 32.6 9.3 82 46-128 113-208 (242)
384 PLN02229 alpha-galactosidase 72.7 15 0.00033 37.7 8.0 73 49-122 128-225 (427)
385 COG0329 DapA Dihydrodipicolina 72.4 47 0.001 32.3 11.0 126 64-198 10-167 (299)
386 TIGR00735 hisF imidazoleglycer 72.3 15 0.00032 34.5 7.4 52 75-127 161-219 (254)
387 TIGR01235 pyruv_carbox pyruvat 72.2 26 0.00057 40.3 10.5 158 31-217 573-763 (1143)
388 cd06287 PBP1_LacI_like_8 Ligan 72.1 64 0.0014 29.8 11.6 85 48-134 23-119 (269)
389 PRK07565 dihydroorotate dehydr 72.0 30 0.00065 33.9 9.7 91 105-221 100-200 (334)
390 COG0106 HisA Phosphoribosylfor 71.7 77 0.0017 30.2 11.9 142 46-213 59-216 (241)
391 PRK15452 putative protease; Pr 71.7 1.3E+02 0.0028 31.1 14.7 138 63-246 4-156 (443)
392 cd04741 DHOD_1A_like Dihydroor 71.7 99 0.0021 29.8 15.2 174 61-248 90-292 (294)
393 PF13714 PEP_mutase: Phosphoen 71.7 22 0.00049 33.5 8.4 80 55-134 2-100 (238)
394 cd00958 DhnA Class I fructose- 71.6 82 0.0018 28.8 12.9 107 74-214 81-210 (235)
395 cd06295 PBP1_CelR Ligand bindi 71.5 67 0.0015 29.1 11.5 62 49-111 27-92 (275)
396 COG1609 PurR Transcriptional r 71.5 52 0.0011 32.1 11.2 88 46-134 72-176 (333)
397 TIGR00656 asp_kin_monofn aspar 71.5 65 0.0014 32.1 12.2 32 85-116 4-43 (401)
398 PRK11840 bifunctional sulfur c 71.5 31 0.00068 34.3 9.6 93 47-146 179-282 (326)
399 PRK13587 1-(5-phosphoribosyl)- 71.4 44 0.00095 31.2 10.2 103 91-229 60-180 (234)
400 PLN02692 alpha-galactosidase 71.2 8.3 0.00018 39.4 5.7 65 49-113 121-208 (412)
401 cd00950 DHDPS Dihydrodipicolin 71.2 94 0.002 29.3 15.7 84 44-127 48-152 (284)
402 PF05853 DUF849: Prokaryotic p 70.9 3.1 6.7E-05 39.9 2.5 54 186-249 17-72 (272)
403 PF04131 NanE: Putative N-acet 70.9 40 0.00087 31.0 9.5 118 64-213 47-168 (192)
404 PRK06245 cofG FO synthase subu 70.8 1.1E+02 0.0023 29.8 13.9 130 97-246 157-297 (336)
405 cd00717 URO-D Uroporphyrinogen 70.7 33 0.00072 33.3 9.7 81 46-131 212-301 (335)
406 cd06317 PBP1_ABC_sugar_binding 70.7 81 0.0018 28.4 12.2 64 49-112 17-87 (275)
407 PLN02444 HMP-P synthase 70.6 32 0.00068 36.7 9.8 139 46-248 358-506 (642)
408 PF00856 SET: SET domain; Int 70.5 2.1 4.6E-05 35.1 1.1 16 272-287 1-16 (162)
409 TIGR01306 GMP_reduct_2 guanosi 70.5 42 0.0009 33.3 10.2 80 48-128 122-219 (321)
410 PRK08210 aspartate kinase I; R 70.4 51 0.0011 33.0 11.2 32 85-116 5-44 (403)
411 PLN02617 imidazole glycerol ph 70.4 15 0.00032 38.9 7.5 52 75-127 444-502 (538)
412 PRK05826 pyruvate kinase; Prov 70.2 36 0.00078 35.4 10.2 87 47-134 197-308 (465)
413 PLN02808 alpha-galactosidase 70.2 12 0.00025 38.1 6.4 74 49-123 97-196 (386)
414 cd06270 PBP1_GalS_like Ligand 70.0 80 0.0017 28.5 11.6 64 48-112 15-84 (268)
415 cd04260 AAK_AKi-DapG-BS AAK_AK 69.9 96 0.0021 28.9 15.0 31 85-115 3-41 (244)
416 cd06318 PBP1_ABC_sugar_binding 69.8 28 0.0006 31.7 8.5 64 49-112 16-86 (282)
417 TIGR00539 hemN_rel putative ox 69.6 1.2E+02 0.0026 29.9 14.3 74 46-131 65-147 (360)
418 PLN02591 tryptophan synthase 69.6 1E+02 0.0023 29.3 16.3 164 1-213 27-213 (250)
419 PRK08610 fructose-bisphosphate 69.5 1.1E+02 0.0025 29.7 13.5 78 86-213 18-102 (286)
420 cd06309 PBP1_YtfQ_like Peripla 69.3 24 0.00052 32.1 8.0 64 49-112 16-86 (273)
421 PRK04180 pyridoxal biosynthesi 69.2 40 0.00087 33.0 9.6 40 173-213 188-229 (293)
422 cd00953 KDG_aldolase KDG (2-ke 69.2 1.1E+02 0.0023 29.2 15.7 151 44-247 47-216 (279)
423 cd06281 PBP1_LacI_like_5 Ligan 69.1 30 0.00064 31.4 8.5 64 49-112 16-85 (269)
424 PRK04147 N-acetylneuraminate l 69.1 52 0.0011 31.5 10.5 28 106-134 73-101 (293)
425 cd06293 PBP1_LacI_like_11 Liga 69.0 89 0.0019 28.2 12.0 85 49-134 16-117 (269)
426 PF01070 FMN_dh: FMN-dependent 68.9 15 0.00032 36.7 6.9 76 51-127 214-300 (356)
427 PF09370 TIM-br_sig_trns: TIM- 68.9 10 0.00022 36.7 5.4 60 33-92 121-180 (268)
428 TIGR01036 pyrD_sub2 dihydrooro 68.9 1.2E+02 0.0027 29.8 14.0 97 107-216 211-315 (335)
429 PRK14987 gluconate operon tran 68.9 66 0.0014 30.4 11.1 85 49-134 80-181 (331)
430 TIGR02321 Pphn_pyruv_hyd phosp 68.9 32 0.00069 33.5 9.0 81 53-134 6-105 (290)
431 TIGR02708 L_lactate_ox L-lacta 68.8 47 0.001 33.5 10.4 129 93-255 214-347 (367)
432 cd06324 PBP1_ABC_sugar_binding 68.7 19 0.00041 33.9 7.3 62 51-112 19-88 (305)
433 cd00502 DHQase_I Type I 3-dehy 68.7 15 0.00033 33.7 6.5 67 49-116 100-183 (225)
434 TIGR01305 GMP_reduct_1 guanosi 68.6 24 0.00051 35.3 8.1 78 50-128 137-233 (343)
435 PRK05835 fructose-bisphosphate 68.6 48 0.001 32.6 10.2 78 86-213 17-99 (307)
436 TIGR01858 tag_bisphos_ald clas 68.6 31 0.00067 33.5 8.8 74 52-127 116-221 (282)
437 COG0042 tRNA-dihydrouridine sy 68.4 36 0.00079 33.5 9.4 88 88-198 112-207 (323)
438 cd08210 RLP_RrRLP Ribulose bis 68.4 1.1E+02 0.0024 30.7 13.0 103 104-247 189-305 (364)
439 PRK07709 fructose-bisphosphate 68.3 35 0.00076 33.2 9.1 74 52-127 121-224 (285)
440 TIGR01060 eno phosphopyruvate 68.2 39 0.00084 34.5 9.9 87 46-132 262-356 (425)
441 TIGR02313 HpaI-NOT-DapA 2,4-di 68.2 1.2E+02 0.0025 29.2 14.2 151 44-246 48-222 (294)
442 PRK09284 thiamine biosynthesis 67.9 40 0.00086 35.9 9.8 139 46-248 353-501 (607)
443 COG1456 CdhE CO dehydrogenase/ 67.9 48 0.001 33.6 9.9 85 47-134 144-232 (467)
444 TIGR02708 L_lactate_ox L-lacta 67.8 27 0.00058 35.2 8.4 78 46-127 215-303 (367)
445 PLN02765 pyruvate kinase 67.7 47 0.001 35.1 10.4 87 47-134 231-341 (526)
446 PRK07455 keto-hydroxyglutarate 67.6 56 0.0012 29.4 9.8 76 52-132 95-173 (187)
447 COG0826 Collagenase and relate 67.5 74 0.0016 31.8 11.4 136 64-247 8-160 (347)
448 PLN02424 ketopantoate hydroxym 67.5 61 0.0013 32.3 10.7 66 45-110 77-155 (332)
449 PRK11475 DNA-binding transcrip 67.5 7.8 0.00017 35.5 4.2 43 176-218 55-99 (207)
450 PF01208 URO-D: Uroporphyrinog 67.5 33 0.00072 33.1 8.9 82 45-131 216-307 (343)
451 cd04724 Tryptophan_synthase_al 67.4 1.1E+02 0.0024 28.6 16.7 55 72-127 94-150 (242)
452 TIGR01163 rpe ribulose-phospha 67.3 90 0.002 27.6 14.6 79 45-125 42-122 (210)
453 PRK07028 bifunctional hexulose 67.2 1.5E+02 0.0032 30.1 14.4 131 49-213 43-185 (430)
454 PRK07028 bifunctional hexulose 67.1 54 0.0012 33.2 10.6 73 50-124 95-178 (430)
455 PRK10605 N-ethylmaleimide redu 66.9 37 0.0008 33.9 9.2 131 1-144 170-323 (362)
456 cd06278 PBP1_LacI_like_2 Ligan 66.9 94 0.002 27.7 11.3 63 49-112 16-83 (266)
457 PF01876 RNase_P_p30: RNase P 66.9 7.9 0.00017 33.4 4.0 78 49-129 33-130 (150)
458 cd04747 OYE_like_5_FMN Old yel 66.9 1.4E+02 0.0031 29.8 16.2 114 44-196 132-287 (361)
459 cd06277 PBP1_LacI_like_1 Ligan 66.9 27 0.0006 31.6 7.8 62 49-112 19-86 (268)
460 PRK06582 coproporphyrinogen II 66.8 1.1E+02 0.0025 30.7 12.8 74 46-131 76-158 (390)
461 cd06279 PBP1_LacI_like_3 Ligan 66.8 28 0.00062 32.0 8.0 85 49-134 21-117 (283)
462 PRK13125 trpA tryptophan synth 66.7 1.1E+02 0.0024 28.5 14.2 131 51-213 63-209 (244)
463 PRK09310 aroDE bifunctional 3- 66.6 46 0.001 34.4 10.1 66 47-114 90-165 (477)
464 cd03332 LMO_FMN L-Lactate 2-mo 66.6 63 0.0014 32.8 10.8 129 94-256 240-373 (383)
465 PRK14725 pyruvate kinase; Prov 66.5 35 0.00076 36.6 9.3 83 47-129 455-566 (608)
466 COG4029 Uncharacterized protei 66.5 31 0.00067 29.8 7.2 63 84-148 7-76 (142)
467 PRK01033 imidazole glycerol ph 66.4 26 0.00055 33.1 7.7 54 73-127 156-216 (258)
468 PRK08841 aspartate kinase; Val 66.4 1.4E+02 0.0031 30.1 13.4 38 85-122 5-50 (392)
469 cd02933 OYE_like_FMN Old yello 66.3 1.4E+02 0.003 29.5 16.3 132 44-216 140-312 (338)
470 cd01149 HutB Hemin binding pro 66.0 25 0.00053 31.9 7.3 66 63-131 40-105 (235)
471 PRK07315 fructose-bisphosphate 66.0 1.2E+02 0.0026 29.5 12.3 105 86-252 18-128 (293)
472 COG2204 AtoC Response regulato 66.0 15 0.00032 38.2 6.3 45 177-222 64-110 (464)
473 PRK09197 fructose-bisphosphate 65.8 84 0.0018 31.6 11.4 36 179-215 83-121 (350)
474 cd00564 TMP_TenI Thiamine mono 65.7 45 0.00097 28.8 8.6 66 59-126 92-168 (196)
475 PRK14024 phosphoribosyl isomer 65.5 25 0.00054 32.8 7.3 53 74-127 151-210 (241)
476 PF00290 Trp_syntA: Tryptophan 65.5 69 0.0015 30.7 10.4 170 1-214 35-225 (259)
477 COG3010 NanE Putative N-acetyl 65.4 95 0.0021 29.2 10.8 135 50-213 54-204 (229)
478 PLN03228 methylthioalkylmalate 65.3 34 0.00074 35.9 8.9 96 98-222 214-320 (503)
479 PRK08354 putative aminotransfe 65.3 42 0.00091 31.9 9.0 90 50-146 66-160 (311)
480 cd04737 LOX_like_FMN L-Lactate 65.1 62 0.0014 32.3 10.4 127 95-255 209-340 (351)
481 PF07287 DUF1446: Protein of u 65.1 62 0.0013 32.6 10.4 34 97-131 62-95 (362)
482 cd06320 PBP1_allose_binding Pe 65.0 28 0.0006 31.7 7.5 63 50-112 17-88 (275)
483 TIGR02417 fruct_sucro_rep D-fr 65.0 37 0.0008 32.0 8.5 64 49-112 77-146 (327)
484 PRK03170 dihydrodipicolinate s 64.9 1.3E+02 0.0028 28.6 13.1 133 42-213 47-200 (292)
485 cd06294 PBP1_ycjW_transcriptio 64.9 94 0.002 27.8 10.9 64 48-112 20-89 (270)
486 PLN02826 dihydroorotate dehydr 64.7 64 0.0014 32.9 10.6 131 106-254 262-396 (409)
487 cd01541 PBP1_AraR Ligand-bindi 64.5 38 0.00082 30.7 8.2 64 49-112 16-89 (273)
488 cd01299 Met_dep_hydrolase_A Me 64.5 31 0.00068 33.0 8.0 64 45-110 156-219 (342)
489 PF01964 ThiC: ThiC family; I 64.4 12 0.00026 38.2 5.1 136 48-249 201-348 (420)
490 cd00947 TBP_aldolase_IIB Tagat 64.4 99 0.0021 29.9 11.3 115 76-254 3-123 (276)
491 PRK08187 pyruvate kinase; Vali 64.2 43 0.00094 35.1 9.4 82 47-128 335-448 (493)
492 cd07947 DRE_TIM_Re_CS Clostrid 64.2 1.4E+02 0.003 28.8 13.3 40 178-217 190-234 (279)
493 cd06297 PBP1_LacI_like_12 Liga 64.2 32 0.0007 31.4 7.8 63 49-112 16-84 (269)
494 PRK03620 5-dehydro-4-deoxygluc 63.8 49 0.0011 31.9 9.2 104 63-194 12-138 (303)
495 TIGR02319 CPEP_Pphonmut carbox 63.5 43 0.00093 32.7 8.7 82 52-134 6-107 (294)
496 cd00946 FBP_aldolase_IIA Class 63.5 58 0.0012 32.6 9.7 31 86-116 16-50 (345)
497 PRK15446 phosphonate metabolis 63.4 74 0.0016 31.8 10.7 64 44-111 209-273 (383)
498 smart00052 EAL Putative diguan 63.0 54 0.0012 29.1 8.9 75 51-127 135-222 (241)
499 TIGR03471 HpnJ hopanoid biosyn 62.8 1E+02 0.0022 31.5 11.9 85 46-131 258-364 (472)
500 cd01948 EAL EAL domain. This d 62.8 38 0.00083 30.1 7.8 77 50-127 133-221 (240)
No 1
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=2.9e-93 Score=677.91 Aligned_cols=305 Identities=35% Similarity=0.556 Sum_probs=295.0
Q ss_pred CCCCcEEEeecccccccccccccCCCCCCCCC-CcccHHHHHHhhcCCHHHHHHHHHHHHHcCCceEeccCChhhHHHHH
Q psy17999 1 ECGADCVKFQKSCLSTKFTQSALDRPYLSPHA-WANTYGQHKQHLEFSQEEYVMLQQCADQVDIMFTASAMDQVSFDFLL 79 (335)
Q Consensus 1 ~aGaDaVKFQ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~el~~e~~~~L~~~~~~~Gi~f~stpfd~~svd~l~ 79 (335)
+||||+||||+|.+.+.++.++...+|..+.. |+.++++++++++++.+|+.+|++||++.||.|+|||||..+||+|+
T Consensus 41 ~aGADavKfQt~~~~d~~t~~~~~~~~~i~~~~~~~slyel~e~~~~p~e~~~~Lke~a~~~Gi~~~SSPfd~~svd~l~ 120 (347)
T COG2089 41 EAGADAVKFQTFYTPDIMTLESKNVPFKIKTLWDKVSLYELYEEAETPLEWHAQLKEYARKRGIIFFSSPFDLTAVDLLE 120 (347)
T ss_pred HcCcceeeeecccccccccccccCCccccccccccccHHHHHHHhcCCHHHHHHHHHHHHHcCeEEEecCCCHHHHHHHH
Confidence 58999999999888888899988888876654 45789999999999999999999999999999999999999999999
Q ss_pred hCCCCEEEEcCCCCCCHHHHHHHHhcCCcEEEeCCCCCCHHHHHHHHHHHHh-cCCCCceeecccCCCCCCCCcccccCc
Q psy17999 80 SANVPFIKIGSGDSNNIPLIKYAASKQKPLIISTGMLPSIEHVDNIYTTVKQ-YHSNLSILHCVSAYPTPYPTVKQYHSN 158 (335)
Q Consensus 80 ~l~v~~~KIaS~d~~n~~LL~~~a~~gkPvilStG~~~tl~Ei~~Av~~i~~-g~~~~~~~~c~~g~~~~~~~~~~~~~~ 158 (335)
++++++|||||+++||+|||+++|+++|||||||||+ +++||..|++++++ ||+ +
T Consensus 121 ~~~~~ayKIaS~E~~~~plik~iA~~~kPiIlSTGma-~~~ei~~av~~~r~~g~~-----------------------~ 176 (347)
T COG2089 121 SLNPPAYKIASGEINDLPLIKYIAKKGKPIILSTGMA-TIEEIEEAVAILRENGNP-----------------------D 176 (347)
T ss_pred hcCCCeEEecCccccChHHHHHHHhcCCCEEEEcccc-cHHHHHHHHHHHHhcCCC-----------------------C
Confidence 9999999999999999999999999999999999999 99999999999998 766 8
Q ss_pred eEEeeecCCCCCCccCCCchHHHHHHHHCCCCCeecCCCCCChHHHHHHHHcCCcEEEeccCCCCCCCCCCCCCCCCHHH
Q psy17999 159 LSILHCVSAYPTPYHDINLNVIHTLRSRYPDIPIGYSGHENGVHVCYAAVAMGAQIIEKHFTLDKSWKGSDHASSLTPPE 238 (335)
Q Consensus 159 l~llHC~s~YP~~~~~~nL~~i~~L~~~fp~~pVG~SdHt~g~~~~~aAvalGA~vIEkH~tld~~~~G~Dh~~Sl~p~e 238 (335)
++||||+|+||+|++++||+.|+.|++.| +++|||||||.|..++++||||||+|||||||+||+++||||++||+|++
T Consensus 177 i~LLhC~s~YPap~ed~NL~~i~~l~~~F-n~~vGlSDHT~g~~a~l~AvALGA~viEKHFtldk~~~GpD~~fSldP~e 255 (347)
T COG2089 177 IALLHCTSAYPAPFEDVNLKAIPKLAEAF-NAIVGLSDHTLGILAPLAAVALGASVIEKHFTLDKSREGPDHAFSLDPDE 255 (347)
T ss_pred eEEEEecCCCCCCHHHhhHHHHHHHHHHh-CCccccccCccchhHHHHHHHhcccceeeeeeecCCCCCCCcceecCHHH
Confidence 99999999999999999999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCccCCccccccccccceEEEEeecCCCCcccccCCcEEeeCCCCCCCcchHHHHhcchhhcc
Q psy17999 239 LKALVTGIRDIEQSLGSPTKRMQVSEAPCYAKLGKCIVSSCDIQAGTVLQEFHVCIKVAEPKGICGTRYASVMGRKVNRD 318 (335)
Q Consensus 239 l~~lv~~ir~~~~alG~~~k~~~~~E~~~~~~~rrsl~a~~di~~G~~l~~~dl~~kr~~~~Gi~p~~~~~viG~~~~~d 318 (335)
|+.||+++|+++.+||++.|++.++|+..+..+|||||+.+||||||+||++||+++|| +.||+|.+|+.++|++++||
T Consensus 256 fk~mv~~ir~~~~alG~~~k~~~~~E~~~~~~~~Rsl~~~kdikkGe~ls~~Nl~~~RP-~~gl~~~~~e~llGkka~kd 334 (347)
T COG2089 256 FKEMVDAIRQVEKALGDGEKEILPSEEETRNFARRSLVATKDIKKGEILSEDNLKVLRP-GNGLHPKEYEELLGKKATKD 334 (347)
T ss_pred HHHHHHHHHHHHHHhCCCccccChhHHHHHHHHhhheeeecccccCccccccceEEeCC-CCCCCHhHHHHHHhHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999985 78999999999999999999
Q ss_pred cCCCCcccCCCCC
Q psy17999 319 IRRDESIQDIDLD 331 (335)
Q Consensus 319 i~~~~~i~~~~l~ 331 (335)
|++|++|+|+||+
T Consensus 335 i~~~~~l~w~Di~ 347 (347)
T COG2089 335 IKAGTPLRWDDIE 347 (347)
T ss_pred ccCCCCcchhccC
Confidence 9999999999985
No 2
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=100.00 E-value=3.8e-92 Score=683.40 Aligned_cols=301 Identities=38% Similarity=0.606 Sum_probs=286.3
Q ss_pred CCCCcEEEeecccccccccccccCCCCCCCCCC-cccHHHHHHhhcCCHHHHHHHHHHHHHcCCceEeccCChhhHHHHH
Q psy17999 1 ECGADCVKFQKSCLSTKFTQSALDRPYLSPHAW-ANTYGQHKQHLEFSQEEYVMLQQCADQVDIMFTASAMDQVSFDFLL 79 (335)
Q Consensus 1 ~aGaDaVKFQ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~el~~e~~~~L~~~~~~~Gi~f~stpfd~~svd~l~ 79 (335)
+|||||||||+|+++++++......+|...+.| +.++++++++++|+++||.+|+++|+++||.|+|||||.++||+++
T Consensus 27 ~aGadaVKfQt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~L~~~~~~~Gi~~~stpfd~~svd~l~ 106 (329)
T TIGR03569 27 EAGADAVKFQTFKAEDLVSKNAPKAEYQKINTGAEESQLEMLKKLELSEEDHRELKEYCESKGIEFLSTPFDLESADFLE 106 (329)
T ss_pred HhCCCEEEeeeCCHHHhhCcccccccccccCCcCCCcHHHHHHHhCCCHHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHH
Confidence 589999999999999999988766567666566 4578899999999999999999999999999999999999999999
Q ss_pred hCCCCEEEEcCCCCCCHHHHHHHHhcCCcEEEeCCCCCCHHHHHHHHHHHHh-cCCCCceeecccCCCCCCCCcccccCc
Q psy17999 80 SANVPFIKIGSGDSNNIPLIKYAASKQKPLIISTGMLPSIEHVDNIYTTVKQ-YHSNLSILHCVSAYPTPYPTVKQYHSN 158 (335)
Q Consensus 80 ~l~v~~~KIaS~d~~n~~LL~~~a~~gkPvilStG~~~tl~Ei~~Av~~i~~-g~~~~~~~~c~~g~~~~~~~~~~~~~~ 158 (335)
++|||+|||||++++|+|||+++|++||||||||||+ |++||+.||+++++ ||.+ .+
T Consensus 107 ~~~v~~~KIaS~~~~n~pLL~~~A~~gkPvilStGma-tl~Ei~~Av~~i~~~G~~~---------------------~~ 164 (329)
T TIGR03569 107 DLGVPRFKIPSGEITNAPLLKKIARFGKPVILSTGMA-TLEEIEAAVGVLRDAGTPD---------------------SN 164 (329)
T ss_pred hcCCCEEEECcccccCHHHHHHHHhcCCcEEEECCCC-CHHHHHHHHHHHHHcCCCc---------------------Cc
Confidence 9999999999999999999999999999999999999 99999999999997 6540 15
Q ss_pred eEEeeecCCCCCCccCCCchHHHHHHHHCCCCCeecCCCCCChHHHHHHHHcCCcEEEeccCCCCCCCCCCCCCCCCHHH
Q psy17999 159 LSILHCVSAYPTPYHDINLNVIHTLRSRYPDIPIGYSGHENGVHVCYAAVAMGAQIIEKHFTLDKSWKGSDHASSLTPPE 238 (335)
Q Consensus 159 l~llHC~s~YP~~~~~~nL~~i~~L~~~fp~~pVG~SdHt~g~~~~~aAvalGA~vIEkH~tld~~~~G~Dh~~Sl~p~e 238 (335)
++||||+|.||+|.+++||++|++||++| ++||||||||.|..+++||||+||+||||||||||+++|+||.+||+|+|
T Consensus 165 i~llhC~s~YP~~~~~~nL~~I~~Lk~~f-~~pVG~SdHt~G~~~~~aAvalGA~iIEkH~tldk~~~G~D~~~Sl~p~e 243 (329)
T TIGR03569 165 ITLLHCTTEYPAPFEDVNLNAMDTLKEAF-DLPVGYSDHTLGIEAPIAAVALGATVIEKHFTLDKNLPGPDHKASLEPDE 243 (329)
T ss_pred EEEEEECCCCCCCcccCCHHHHHHHHHHh-CCCEEECCCCccHHHHHHHHHcCCCEEEeCCChhhcCCCCChhhcCCHHH
Confidence 99999999999999999999999999999 89999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCccCCccccccccccceEEEEeecCCCCcccccCCcEEeeCCCCCCCcchHHHHhcchhhcc
Q psy17999 239 LKALVTGIRDIEQSLGSPTKRMQVSEAPCYAKLGKCIVSSCDIQAGTVLQEFHVCIKVAEPKGICGTRYASVMGRKVNRD 318 (335)
Q Consensus 239 l~~lv~~ir~~~~alG~~~k~~~~~E~~~~~~~rrsl~a~~di~~G~~l~~~dl~~kr~~~~Gi~p~~~~~viG~~~~~d 318 (335)
|++||+.+|.++.+||++.|++.++|..++..+|||||+++||++|++||.+||++||| +.||+|.+|++|+||+++||
T Consensus 244 l~~lv~~ir~~~~~lG~~~k~~~~~E~~~~~~~rrsl~a~~di~~G~~lt~~~l~~~RP-~~Gi~p~~~~~v~G~~~~~d 322 (329)
T TIGR03569 244 LKEMVQGIRNVEKALGDGVKRPTPSEQKNRDVARKSLVAAKDIKKGEIFTEDNLTVKRP-GNGISPMEYWEVIGKKASRD 322 (329)
T ss_pred HHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhcceEEEEccCcCCCCEecHHheeeeCC-CCCCCHhHHHHhcCceeecc
Confidence 99999999999999999999999999999998899999999999999999999999996 68999999999999999999
Q ss_pred cCCCCcc
Q psy17999 319 IRRDESI 325 (335)
Q Consensus 319 i~~~~~i 325 (335)
|++|++|
T Consensus 323 i~~~~~i 329 (329)
T TIGR03569 323 YEEDELI 329 (329)
T ss_pred cCCCCcC
Confidence 9999986
No 3
>TIGR03586 PseI pseudaminic acid synthase.
Probab=100.00 E-value=2.1e-89 Score=663.75 Aligned_cols=297 Identities=32% Similarity=0.482 Sum_probs=279.5
Q ss_pred CCCCcEEEeecccccccccccccCCCCCCC-CCCc-ccHHHHHHhhcCCHHHHHHHHHHHHHcCCceEeccCChhhHHHH
Q psy17999 1 ECGADCVKFQKSCLSTKFTQSALDRPYLSP-HAWA-NTYGQHKQHLEFSQEEYVMLQQCADQVDIMFTASAMDQVSFDFL 78 (335)
Q Consensus 1 ~aGaDaVKFQ~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~el~~e~~~~L~~~~~~~Gi~f~stpfd~~svd~l 78 (335)
+|||||||||+|+++++++..... +|... ..|+ .++++++++++|+.+||.+|++||+++||.|+|||||.+++|++
T Consensus 28 ~aGAdavKFQ~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~el~~e~~~~L~~~~~~~Gi~~~stpfd~~svd~l 106 (327)
T TIGR03586 28 AAGADAIKLQTYTPDTITLDSDRP-EFIIKGGLWDGRTLYDLYQEAHTPWEWHKELFERAKELGLTIFSSPFDETAVDFL 106 (327)
T ss_pred HhCCCEEEeeeccHHHhhcccccc-ccccccCCcCCccHHHHHHHhhCCHHHHHHHHHHHHHhCCcEEEccCCHHHHHHH
Confidence 589999999999999998776532 34332 2464 36778889999999999999999999999999999999999999
Q ss_pred HhCCCCEEEEcCCCCCCHHHHHHHHhcCCcEEEeCCCCCCHHHHHHHHHHHHh-cCCCCceeecccCCCCCCCCcccccC
Q psy17999 79 LSANVPFIKIGSGDSNNIPLIKYAASKQKPLIISTGMLPSIEHVDNIYTTVKQ-YHSNLSILHCVSAYPTPYPTVKQYHS 157 (335)
Q Consensus 79 ~~l~v~~~KIaS~d~~n~~LL~~~a~~gkPvilStG~~~tl~Ei~~Av~~i~~-g~~~~~~~~c~~g~~~~~~~~~~~~~ 157 (335)
.++|+++|||||++++|+|||+++|++||||||||||+ |++||+.|+++|.+ ||.
T Consensus 107 ~~~~v~~~KI~S~~~~n~~LL~~va~~gkPvilstG~~-t~~Ei~~Av~~i~~~g~~----------------------- 162 (327)
T TIGR03586 107 ESLDVPAYKIASFEITDLPLIRYVAKTGKPIIMSTGIA-TLEEIQEAVEACREAGCK----------------------- 162 (327)
T ss_pred HHcCCCEEEECCccccCHHHHHHHHhcCCcEEEECCCC-CHHHHHHHHHHHHHCCCC-----------------------
Confidence 99999999999999999999999999999999999999 99999999999997 766
Q ss_pred ceEEeeecCCCCCCccCCCchHHHHHHHHCCCCCeecCCCCCChHHHHHHHHcCCcEEEeccCCCCCCCCCCCCCCCCHH
Q psy17999 158 NLSILHCVSAYPTPYHDINLNVIHTLRSRYPDIPIGYSGHENGVHVCYAAVAMGAQIIEKHFTLDKSWKGSDHASSLTPP 237 (335)
Q Consensus 158 ~l~llHC~s~YP~~~~~~nL~~i~~L~~~fp~~pVG~SdHt~g~~~~~aAvalGA~vIEkH~tld~~~~G~Dh~~Sl~p~ 237 (335)
+++||||+|+||+|.+++||++|++|+++| ++|||||||+.|..+++||||+||+|||||||+||+|+|+||.+||+|+
T Consensus 163 ~i~LlhC~s~YP~~~~~~nL~~i~~lk~~f-~~pVG~SDHt~G~~~~~aAva~GA~iIEkH~tld~~l~G~D~~~Sl~p~ 241 (327)
T TIGR03586 163 DLVLLKCTSSYPAPLEDANLRTIPDLAERF-NVPVGLSDHTLGILAPVAAVALGACVIEKHFTLDRSDGGVDSAFSLEPD 241 (327)
T ss_pred cEEEEecCCCCCCCcccCCHHHHHHHHHHh-CCCEEeeCCCCchHHHHHHHHcCCCEEEeCCChhhcCCCCChhccCCHH
Confidence 899999999999999999999999999999 8999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCccCCccccccccccceEEEEeecCCCCcccccCCcEEeeCCCCCCCcchHHHHhcchhhc
Q psy17999 238 ELKALVTGIRDIEQSLGSPTKRMQVSEAPCYAKLGKCIVSSCDIQAGTVLQEFHVCIKVAEPKGICGTRYASVMGRKVNR 317 (335)
Q Consensus 238 el~~lv~~ir~~~~alG~~~k~~~~~E~~~~~~~rrsl~a~~di~~G~~l~~~dl~~kr~~~~Gi~p~~~~~viG~~~~~ 317 (335)
||++||+.||.++.+||++.|.+.++|.+.+. +|||||+++||++|++||++||++||| +.||+|.+|+.|+||+++|
T Consensus 242 e~~~lv~~ir~~~~~lg~~~k~~~~~E~~~~~-~rrsl~a~~di~~G~~it~~~l~~kRP-~~Gi~p~~~~~v~G~~~~~ 319 (327)
T TIGR03586 242 EFKALVKEVRNAWLALGEVNYELSEKEKKSRQ-FRRSLYVVKDIKKGETFTEENVRSVRP-GFGLHPKYLDEILGKKANQ 319 (327)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCcCHHHhhccc-eeEEEEEccCcCCCCEecHHheeeeCC-CCCCCHhHHHHhCCceeec
Confidence 99999999999999999999999999988655 699999999999999999999999996 7899999999999999999
Q ss_pred ccCCCCcc
Q psy17999 318 DIRRDESI 325 (335)
Q Consensus 318 di~~~~~i 325 (335)
||++|++|
T Consensus 320 ~i~~~~~i 327 (327)
T TIGR03586 320 DIKKGTPL 327 (327)
T ss_pred ccCCCCcC
Confidence 99999986
No 4
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=100.00 E-value=1.3e-80 Score=580.15 Aligned_cols=233 Identities=45% Similarity=0.763 Sum_probs=193.9
Q ss_pred CCCCcEEEeecccccccccccccCCCCCCCCCCc-ccHHHHHHhhcCCHHHHHHHHHHHHHcCCceEeccCChhhHHHHH
Q psy17999 1 ECGADCVKFQKSCLSTKFTQSALDRPYLSPHAWA-NTYGQHKQHLEFSQEEYVMLQQCADQVDIMFTASAMDQVSFDFLL 79 (335)
Q Consensus 1 ~aGaDaVKFQ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~el~~e~~~~L~~~~~~~Gi~f~stpfd~~svd~l~ 79 (335)
+|||||||||+|.+++++++.....+|+.++.|+ .+|++++++++|+.+||.+|++||++.||.|++||||++++++|+
T Consensus 7 ~aGaDaVKFQ~~~~~~l~~~~~~~~~y~~~~~~~~~~~~~~~~~~el~~e~~~~L~~~~~~~gi~f~stpfd~~s~d~l~ 86 (241)
T PF03102_consen 7 EAGADAVKFQTFTAEELYSPNAYKAPYQSPNGWGDESYYELFKKLELSEEQHKELFEYCKELGIDFFSTPFDEESVDFLE 86 (241)
T ss_dssp HHT-SEEEEEEB-HHHHCSGGGGG-------TT-SSTHHHHHHHHSS-HHHHHHHHHHHHHTT-EEEEEE-SHHHHHHHH
T ss_pred HhCCCEEEEEEEchhhhcChhhhcccccccCCCCCCcHHHHHHHhcCCHHHHHHHHHHHHHcCCEEEECCCCHHHHHHHH
Confidence 4899999999999999999999999999987765 588999999999999999999999999999999999999999999
Q ss_pred hCCCCEEEEcCCCCCCHHHHHHHHhcCCcEEEeCCCCCCHHHHHHHHHHHHh-cCCCCceeecccCCCCCCCCcccccCc
Q psy17999 80 SANVPFIKIGSGDSNNIPLIKYAASKQKPLIISTGMLPSIEHVDNIYTTVKQ-YHSNLSILHCVSAYPTPYPTVKQYHSN 158 (335)
Q Consensus 80 ~l~v~~~KIaS~d~~n~~LL~~~a~~gkPvilStG~~~tl~Ei~~Av~~i~~-g~~~~~~~~c~~g~~~~~~~~~~~~~~ 158 (335)
++|+++|||||+|++|+|||+++|++||||||||||+ |++||+.||++++. +|. +
T Consensus 87 ~~~~~~~KIaS~dl~n~~lL~~~A~tgkPvIlSTG~s-tl~EI~~Av~~~~~~~~~-----------------------~ 142 (241)
T PF03102_consen 87 ELGVPAYKIASGDLTNLPLLEYIAKTGKPVILSTGMS-TLEEIERAVEVLREAGNE-----------------------D 142 (241)
T ss_dssp HHT-SEEEE-GGGTT-HHHHHHHHTT-S-EEEE-TT---HHHHHHHHHHHHHHCT-------------------------
T ss_pred HcCCCEEEeccccccCHHHHHHHHHhCCcEEEECCCC-CHHHHHHHHHHHHhcCCC-----------------------C
Confidence 9999999999999999999999999999999999999 99999999999966 776 9
Q ss_pred eEEeeecCCCCCCccCCCchHHHHHHHHCCCCCeecCCCCCChHHHHHHHHcCCcEEEeccCCCCCCCCCCCCCCCCHHH
Q psy17999 159 LSILHCVSAYPTPYHDINLNVIHTLRSRYPDIPIGYSGHENGVHVCYAAVAMGAQIIEKHFTLDKSWKGSDHASSLTPPE 238 (335)
Q Consensus 159 l~llHC~s~YP~~~~~~nL~~i~~L~~~fp~~pVG~SdHt~g~~~~~aAvalGA~vIEkH~tld~~~~G~Dh~~Sl~p~e 238 (335)
++||||+|+||+|++++||++|++||++| ++||||||||.|+.++++|||+||+|||||||+||+++|+||.+|++|+|
T Consensus 143 l~llHC~s~YP~~~e~~NL~~i~~L~~~f-~~~vG~SDHt~g~~~~~~AvalGA~vIEKHfTldr~~~g~Dh~~Sl~p~e 221 (241)
T PF03102_consen 143 LVLLHCVSSYPTPPEDVNLRVIPTLKERF-GVPVGYSDHTDGIEAPIAAVALGARVIEKHFTLDRNLKGPDHKFSLEPDE 221 (241)
T ss_dssp EEEEEE-SSSS--GGG--TTHHHHHHHHS-TSEEEEEE-SSSSHHHHHHHHTT-SEEEEEB-S-TTSCSTTGCCCB-HHH
T ss_pred EEEEecCCCCCCChHHcChHHHHHHHHhc-CCCEEeCCCCCCcHHHHHHHHcCCeEEEEEEECCCCCCCCChhhcCCHHH
Confidence 99999999999999999999999999999 69999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCc
Q psy17999 239 LKALVTGIRDIEQSLGSPTK 258 (335)
Q Consensus 239 l~~lv~~ir~~~~alG~~~k 258 (335)
|++||+.||+++.+||+++|
T Consensus 222 l~~lv~~ir~~~~alG~~~K 241 (241)
T PF03102_consen 222 LKQLVRDIREVEKALGSGEK 241 (241)
T ss_dssp HHHHHHHHHHHHHHCSHTT-
T ss_pred HHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999876
No 5
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=100.00 E-value=1.5e-48 Score=368.30 Aligned_cols=178 Identities=24% Similarity=0.394 Sum_probs=171.1
Q ss_pred hcCCHHHHHHHHHHHHHcCCceEeccCChhhHHHHHhCCCCEEEEcCCCCCCHHHHHHHHhcCCcEEEeCCCCCCHHHHH
Q psy17999 44 LEFSQEEYVMLQQCADQVDIMFTASAMDQVSFDFLLSANVPFIKIGSGDSNNIPLIKYAASKQKPLIISTGMLPSIEHVD 123 (335)
Q Consensus 44 ~el~~e~~~~L~~~~~~~Gi~f~stpfd~~svd~l~~l~v~~~KIaS~d~~n~~LL~~~a~~gkPvilStG~~~tl~Ei~ 123 (335)
.++..+.+++|+++|+++||.|++||||+.+++++.++ +|++||||++++|++||+++|++||||+|||||++|++||+
T Consensus 71 ~g~g~~gl~~l~~~~~~~Gl~~~t~~~d~~~~~~l~~~-~d~lkI~s~~~~n~~LL~~~a~~gkPVilk~G~~~t~~e~~ 149 (260)
T TIGR01361 71 QGLGEEGLKLLRRAADEHGLPVVTEVMDPRDVEIVAEY-ADILQIGARNMQNFELLKEVGKQGKPVLLKRGMGNTIEEWL 149 (260)
T ss_pred cccHHHHHHHHHHHHHHhCCCEEEeeCChhhHHHHHhh-CCEEEECcccccCHHHHHHHhcCCCcEEEeCCCCCCHHHHH
Confidence 35678999999999999999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred HHHHHHHh-cCCCCceeecccCCCCCCCCcccccCceEEeee-cCCC-CCCccCCCchHHHHHHHHCCCCCeec-CCCCC
Q psy17999 124 NIYTTVKQ-YHSNLSILHCVSAYPTPYPTVKQYHSNLSILHC-VSAY-PTPYHDINLNVIHTLRSRYPDIPIGY-SGHEN 199 (335)
Q Consensus 124 ~Av~~i~~-g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC-~s~Y-P~~~~~~nL~~i~~L~~~fp~~pVG~-SdHt~ 199 (335)
.|++++.+ ||. +++|+|| +|.| |++.+++||++|+.||++| ++|||| |||+.
T Consensus 150 ~Ave~i~~~Gn~-----------------------~i~l~~rG~s~y~~~~~~~~dl~~i~~lk~~~-~~pV~~ds~Hs~ 205 (260)
T TIGR01361 150 YAAEYILSSGNG-----------------------NVILCERGIRTFEKATRNTLDLSAVPVLKKET-HLPIIVDPSHAA 205 (260)
T ss_pred HHHHHHHHcCCC-----------------------cEEEEECCCCCCCCCCcCCcCHHHHHHHHHhh-CCCEEEcCCCCC
Confidence 99999998 776 8999997 9999 8999999999999999999 899999 99999
Q ss_pred C-----hHHHHHHHHcCCc--EEEeccCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q psy17999 200 G-----VHVCYAAVAMGAQ--IIEKHFTLDKSWKGSDHASSLTPPELKALVTGIRD 248 (335)
Q Consensus 200 g-----~~~~~aAvalGA~--vIEkH~tld~~~~G~Dh~~Sl~p~el~~lv~~ir~ 248 (335)
| ..+++||+|+||+ |||||||+||++ +||++||+|++|++||+++|+
T Consensus 206 G~r~~~~~~~~aAva~Ga~gl~iE~H~t~d~a~--~D~~~sl~p~~l~~lv~~i~~ 259 (260)
T TIGR01361 206 GRRDLVIPLAKAAIAAGADGLMIEVHPDPEKAL--SDSKQQLTPEEFKRLVKELRA 259 (260)
T ss_pred CccchHHHHHHHHHHcCCCEEEEEeCCCccccC--CcchhcCCHHHHHHHHHHHhh
Confidence 9 8999999999999 999999999999 599999999999999999986
No 6
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=100.00 E-value=1.6e-47 Score=375.83 Aligned_cols=184 Identities=21% Similarity=0.360 Sum_probs=172.7
Q ss_pred hcCCHHHHHHHHHHHHHcCCceEeccCChhhHHHHHhCCCCEEEEcCCCCCCHHHHHHHHhcCCcEEEeCCCCCCHHHHH
Q psy17999 44 LEFSQEEYVMLQQCADQVDIMFTASAMDQVSFDFLLSANVPFIKIGSGDSNNIPLIKYAASKQKPLIISTGMLPSIEHVD 123 (335)
Q Consensus 44 ~el~~e~~~~L~~~~~~~Gi~f~stpfd~~svd~l~~l~v~~~KIaS~d~~n~~LL~~~a~~gkPvilStG~~~tl~Ei~ 123 (335)
.+++.++|.+|+++|+++||.|++||||..+++++.++ +|++||||++++|+|||+++|++||||||||||++|++||.
T Consensus 164 ~g~~~e~l~~L~~~~~~~Gl~~~t~v~d~~~~~~l~~~-vd~lkI~s~~~~n~~LL~~~a~~gkPVilk~G~~~t~~e~~ 242 (360)
T PRK12595 164 QGLGVEGLKILKQVADEYGLAVISEIVNPADVEVALDY-VDVIQIGARNMQNFELLKAAGRVNKPVLLKRGLSATIEEFI 242 (360)
T ss_pred cCCCHHHHHHHHHHHHHcCCCEEEeeCCHHHHHHHHHh-CCeEEECcccccCHHHHHHHHccCCcEEEeCCCCCCHHHHH
Confidence 46889999999999999999999999999999999999 99999999999999999999999999999999955999999
Q ss_pred HHHHHHHh-cCCCCceeecccCCCCCCCCcccccCceEEee-ecCCCCCC-ccCCCchHHHHHHHHCCCCCeec-CCCCC
Q psy17999 124 NIYTTVKQ-YHSNLSILHCVSAYPTPYPTVKQYHSNLSILH-CVSAYPTP-YHDINLNVIHTLRSRYPDIPIGY-SGHEN 199 (335)
Q Consensus 124 ~Av~~i~~-g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llH-C~s~YP~~-~~~~nL~~i~~L~~~fp~~pVG~-SdHt~ 199 (335)
.|+++|.+ ||. +++|+| |+|.||++ ++++||++|+.||++| ++|||| |||+.
T Consensus 243 ~Ave~i~~~Gn~-----------------------~i~L~erg~s~yp~~~~~~ldl~~i~~lk~~~-~~PV~~d~~Hs~ 298 (360)
T PRK12595 243 YAAEYIMSQGNG-----------------------QIILCERGIRTYEKATRNTLDISAVPILKQET-HLPVMVDVTHST 298 (360)
T ss_pred HHHHHHHHCCCC-----------------------CEEEECCccCCCCCCCCCCcCHHHHHHHHHHh-CCCEEEeCCCCC
Confidence 99999998 776 899999 99999998 7999999999999999 999999 99999
Q ss_pred C-----hHHHHHHHHcCCc--EEEeccCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhC
Q psy17999 200 G-----VHVCYAAVAMGAQ--IIEKHFTLDKSWKGSDHASSLTPPELKALVTGIRDIEQSLG 254 (335)
Q Consensus 200 g-----~~~~~aAvalGA~--vIEkH~tld~~~~G~Dh~~Sl~p~el~~lv~~ir~~~~alG 254 (335)
| ..+++||+|+||+ +||+|| |++..|+||.+||+|++|++||+.+|.+..++.
T Consensus 299 G~r~~~~~~a~aAva~GAdg~~iE~H~--dp~~a~~D~~~sl~p~el~~l~~~i~~~~~~~~ 358 (360)
T PRK12595 299 GRRDLLLPTAKAALAIGADGVMAEVHP--DPAVALSDSAQQMDIPEFDRFLDELKPLANKLN 358 (360)
T ss_pred cchhhHHHHHHHHHHcCCCeEEEEecC--CCCCCCCchhhhCCHHHHHHHHHHHHHHHHhhc
Confidence 9 5589999999995 999999 555667899999999999999999999987653
No 7
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=100.00 E-value=3.1e-46 Score=363.04 Aligned_cols=206 Identities=24% Similarity=0.397 Sum_probs=188.4
Q ss_pred CCCCcEEEeecccccccccccccCCCCCCCCCCcccHHHHHHhhcCCHHHHHHHHHHHHHcCCceEeccCChhhHHHHHh
Q psy17999 1 ECGADCVKFQKSCLSTKFTQSALDRPYLSPHAWANTYGQHKQHLEFSQEEYVMLQQCADQVDIMFTASAMDQVSFDFLLS 80 (335)
Q Consensus 1 ~aGaDaVKFQ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~e~~~~L~~~~~~~Gi~f~stpfd~~svd~l~~ 80 (335)
++||++.+++.|+ |.++|++| ..|..+.+++|+++|+++||+|+++|||+.+++++.+
T Consensus 118 ~~ga~~~r~~~fK------------pRTsp~sf----------~G~g~~gL~~L~~~~~~~Gl~v~tev~d~~~~~~l~~ 175 (335)
T PRK08673 118 EAGAQILRGGAFK------------PRTSPYSF----------QGLGEEGLKLLAEAREETGLPIVTEVMDPRDVELVAE 175 (335)
T ss_pred HhchhhccCcEec------------CCCCCccc----------ccccHHHHHHHHHHHHHcCCcEEEeeCCHHHHHHHHH
Confidence 3788888888885 33444333 3477899999999999999999999999999999999
Q ss_pred CCCCEEEEcCCCCCCHHHHHHHHhcCCcEEEeCCCCCCHHHHHHHHHHHHh-cCCCCceeecccCCCCCCCCcccccCce
Q psy17999 81 ANVPFIKIGSGDSNNIPLIKYAASKQKPLIISTGMLPSIEHVDNIYTTVKQ-YHSNLSILHCVSAYPTPYPTVKQYHSNL 159 (335)
Q Consensus 81 l~v~~~KIaS~d~~n~~LL~~~a~~gkPvilStG~~~tl~Ei~~Av~~i~~-g~~~~~~~~c~~g~~~~~~~~~~~~~~l 159 (335)
+ +|++||||++++|++||+++|++||||+|||||++|++||..|++++.+ ||. ++
T Consensus 176 ~-vd~lqIgAr~~~N~~LL~~va~~~kPViLk~G~~~ti~E~l~A~e~i~~~GN~-----------------------~v 231 (335)
T PRK08673 176 Y-VDILQIGARNMQNFDLLKEVGKTNKPVLLKRGMSATIEEWLMAAEYILAEGNP-----------------------NV 231 (335)
T ss_pred h-CCeEEECcccccCHHHHHHHHcCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCC-----------------------eE
Confidence 9 9999999999999999999999999999999999999999999999998 887 67
Q ss_pred EEeee-cCCC-CCCccCCCchHHHHHHHHCCCCCe-ecCCCCCCh-----HHHHHHHHcCCc--EEEeccCCCCCCCCCC
Q psy17999 160 SILHC-VSAY-PTPYHDINLNVIHTLRSRYPDIPI-GYSGHENGV-----HVCYAAVAMGAQ--IIEKHFTLDKSWKGSD 229 (335)
Q Consensus 160 ~llHC-~s~Y-P~~~~~~nL~~i~~L~~~fp~~pV-G~SdHt~g~-----~~~~aAvalGA~--vIEkH~tld~~~~G~D 229 (335)
+|+|| +++| |.+.+++||++|+.||+.| ++|| |||||+.|. .+++||+|+||+ +||+|||+|+++ +|
T Consensus 232 iL~erG~~tf~~~~~~~ldl~ai~~lk~~~-~lPVi~d~sH~~G~~~~v~~~a~AAvA~GAdGliIE~H~~pd~al--sD 308 (335)
T PRK08673 232 ILCERGIRTFETATRNTLDLSAVPVIKKLT-HLPVIVDPSHATGKRDLVEPLALAAVAAGADGLIVEVHPDPEKAL--SD 308 (335)
T ss_pred EEEECCCCCCCCcChhhhhHHHHHHHHHhc-CCCEEEeCCCCCccccchHHHHHHHHHhCCCEEEEEecCCcccCC--Cc
Confidence 77776 7789 5567999999999999999 8999 999999996 889999999999 999999999999 59
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHhCC
Q psy17999 230 HASSLTPPELKALVTGIRDIEQSLGS 255 (335)
Q Consensus 230 h~~Sl~p~el~~lv~~ir~~~~alG~ 255 (335)
|++||+|++|++|++.+|.++.++|.
T Consensus 309 ~~~sl~p~e~~~lv~~i~~i~~~~g~ 334 (335)
T PRK08673 309 GPQSLTPEEFEELMKKLRAIAEALGR 334 (335)
T ss_pred chhcCCHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999986
No 8
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=100.00 E-value=8.9e-44 Score=332.93 Aligned_cols=176 Identities=19% Similarity=0.315 Sum_probs=166.2
Q ss_pred hcCCHHHHHHHHHHHHHcCCceEeccCChhhHHHHHhCCCCEEEEcCCCCCCHHHHHHHHhcCCcEEEeCC-CCCCHHHH
Q psy17999 44 LEFSQEEYVMLQQCADQVDIMFTASAMDQVSFDFLLSANVPFIKIGSGDSNNIPLIKYAASKQKPLIISTG-MLPSIEHV 122 (335)
Q Consensus 44 ~el~~e~~~~L~~~~~~~Gi~f~stpfd~~svd~l~~l~v~~~KIaS~d~~n~~LL~~~a~~gkPvilStG-~~~tl~Ei 122 (335)
..++.+.+++|+++|+++||.|+++|||+++++++.+. +|++||||++++|++||+++|++||||+|||| |+ |++||
T Consensus 61 ~G~G~~gl~~L~~~~~~~Gl~~~Tev~d~~~v~~~~e~-vdilqIgs~~~~n~~LL~~va~tgkPVilk~G~~~-t~~e~ 138 (250)
T PRK13397 61 QGLGLQGIRYLHEVCQEFGLLSVSEIMSERQLEEAYDY-LDVIQVGARNMQNFEFLKTLSHIDKPILFKRGLMA-TIEEY 138 (250)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEeeCCHHHHHHHHhc-CCEEEECcccccCHHHHHHHHccCCeEEEeCCCCC-CHHHH
Confidence 35888999999999999999999999999999999995 99999999999999999999999999999999 66 99999
Q ss_pred HHHHHHHHh-cCCCCceeecccCCCCCCCCcccccCceEEee-ecCCCCCCcc-CCCchHHHHHHHHCCCCCe--ecCCC
Q psy17999 123 DNIYTTVKQ-YHSNLSILHCVSAYPTPYPTVKQYHSNLSILH-CVSAYPTPYH-DINLNVIHTLRSRYPDIPI--GYSGH 197 (335)
Q Consensus 123 ~~Av~~i~~-g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llH-C~s~YP~~~~-~~nL~~i~~L~~~fp~~pV--G~SdH 197 (335)
..|++++.+ ||. +++|+| |++.||++++ .+||++|+.||++| ++|| |+| |
T Consensus 139 ~~A~e~i~~~Gn~-----------------------~i~L~eRg~~~Y~~~~~n~~dl~ai~~lk~~~-~lPVivd~S-H 193 (250)
T PRK13397 139 LGALSYLQDTGKS-----------------------NIILCERGVRGYDVETRNMLDIMAVPIIQQKT-DLPIIVDVS-H 193 (250)
T ss_pred HHHHHHHHHcCCC-----------------------eEEEEccccCCCCCccccccCHHHHHHHHHHh-CCCeEECCC-C
Confidence 999999998 776 899999 9999999985 99999999999999 9995 556 9
Q ss_pred CCCh-----HHHHHHHHcCCc--EEEeccCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q psy17999 198 ENGV-----HVCYAAVAMGAQ--IIEKHFTLDKSWKGSDHASSLTPPELKALVTGIRD 248 (335)
Q Consensus 198 t~g~-----~~~~aAvalGA~--vIEkH~tld~~~~G~Dh~~Sl~p~el~~lv~~ir~ 248 (335)
+.|. .+++||+|+||+ +||+||++|+++. |+.++|+|++|++|++.+|.
T Consensus 194 s~G~r~~v~~~a~AAvA~GAdGl~IE~H~~P~~A~s--D~~q~l~~~~l~~l~~~~~~ 249 (250)
T PRK13397 194 STGRRDLLLPAAKIAKAVGANGIMMEVHPDPDHALS--DAAQQIDYKQLEQLGQELWQ 249 (250)
T ss_pred CCcccchHHHHHHHHHHhCCCEEEEEecCCcccccC--chhhhCCHHHHHHHHHHhcc
Confidence 9996 899999999999 9999999999988 99999999999999999863
No 9
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=100.00 E-value=6.5e-44 Score=348.01 Aligned_cols=186 Identities=23% Similarity=0.356 Sum_probs=172.9
Q ss_pred cCCHHHHHHHHHHHHHcCCceEeccCChhhHHHHHhCCCCEEEEcCCCCCCHHHHHHHHhcCCcEEEeCCCCCCHHHHHH
Q psy17999 45 EFSQEEYVMLQQCADQVDIMFTASAMDQVSFDFLLSANVPFIKIGSGDSNNIPLIKYAASKQKPLIISTGMLPSIEHVDN 124 (335)
Q Consensus 45 el~~e~~~~L~~~~~~~Gi~f~stpfd~~svd~l~~l~v~~~KIaS~d~~n~~LL~~~a~~gkPvilStG~~~tl~Ei~~ 124 (335)
.+.++.+++|.++++++||.|+++|||.++++++.++ +|++||||++++|++||+++|++||||+|||||++|++||..
T Consensus 148 G~g~~gl~~L~~~~~e~Gl~~~tev~d~~~v~~~~~~-~d~lqIga~~~~n~~LL~~va~t~kPVllk~G~~~t~ee~~~ 226 (352)
T PRK13396 148 GHGESALELLAAAREATGLGIITEVMDAADLEKIAEV-ADVIQVGARNMQNFSLLKKVGAQDKPVLLKRGMAATIDEWLM 226 (352)
T ss_pred CchHHHHHHHHHHHHHcCCcEEEeeCCHHHHHHHHhh-CCeEEECcccccCHHHHHHHHccCCeEEEeCCCCCCHHHHHH
Confidence 4789999999999999999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred HHHHHHh-cCCCCceeecccCCCCCCCCcccccCceEEeeecCCCCCCccCCCchHHHHHHHHCCCCCe--------ecC
Q psy17999 125 IYTTVKQ-YHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYPTPYHDINLNVIHTLRSRYPDIPI--------GYS 195 (335)
Q Consensus 125 Av~~i~~-g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~s~YP~~~~~~nL~~i~~L~~~fp~~pV--------G~S 195 (335)
|+++|.+ ||. +++||+||+++. +|.|| .+.+||++|+.||++| ++|| |+|
T Consensus 227 A~e~i~~~Gn~--~viL~erG~rtf----------------~s~y~--~~~~dl~ai~~lk~~~-~lPVi~DpsH~~G~s 285 (352)
T PRK13396 227 AAEYILAAGNP--NVILCERGIRTF----------------DRQYT--RNTLDLSVIPVLRSLT-HLPIMIDPSHGTGKS 285 (352)
T ss_pred HHHHHHHcCCC--eEEEEecCCccC----------------cCCCC--CCCcCHHHHHHHHHhh-CCCEEECCcccCCcH
Confidence 9999998 887 666666666543 56788 5889999999999999 9999 777
Q ss_pred CCCCChHHHHHHHHcCCc--EEEeccCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCCC
Q psy17999 196 GHENGVHVCYAAVAMGAQ--IIEKHFTLDKSWKGSDHASSLTPPELKALVTGIRDIEQSLGSP 256 (335)
Q Consensus 196 dHt~g~~~~~aAvalGA~--vIEkH~tld~~~~G~Dh~~Sl~p~el~~lv~~ir~~~~alG~~ 256 (335)
||+. .+++||+|+||+ +||+|||+|++++ ||.+||+|++|++|++.+|.++.++|.+
T Consensus 286 d~~~--~~a~AAva~GAdGliIE~H~~pd~Als--D~~qsl~p~~~~~l~~~i~~i~~~~g~~ 344 (352)
T PRK13396 286 EYVP--SMAMAAIAAGTDSLMIEVHPNPAKALS--DGPQSLTPDRFDRLMQELAVIGKTVGRW 344 (352)
T ss_pred HHHH--HHHHHHHhhCCCeEEEEecCCcccCCC--hhhhcCCHHHHHHHHHHHHHHHHHhCCC
Confidence 7765 789999999999 9999999999999 9999999999999999999999999974
No 10
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=100.00 E-value=1.1e-43 Score=336.28 Aligned_cols=184 Identities=21% Similarity=0.383 Sum_probs=171.2
Q ss_pred cCCHHHHHHHHHHHHHcCCceEeccCChhhHHHHHhCCCCEEEEcCCCCCCHHHHHHHHhcCCcEEEeCCCCCCHHHHHH
Q psy17999 45 EFSQEEYVMLQQCADQVDIMFTASAMDQVSFDFLLSANVPFIKIGSGDSNNIPLIKYAASKQKPLIISTGMLPSIEHVDN 124 (335)
Q Consensus 45 el~~e~~~~L~~~~~~~Gi~f~stpfd~~svd~l~~l~v~~~KIaS~d~~n~~LL~~~a~~gkPvilStG~~~tl~Ei~~ 124 (335)
.+..+++++|+++|+++||+|+++|||+.+++++.++ +|++||||++++|++||+++|++||||+|||||+++++||..
T Consensus 74 G~g~~gl~~l~~~~~~~Gl~~~te~~d~~~~~~l~~~-vd~~kIga~~~~n~~LL~~~a~~gkPV~lk~G~~~s~~e~~~ 152 (266)
T PRK13398 74 GLGEEGLKILKEVGDKYNLPVVTEVMDTRDVEEVADY-ADMLQIGSRNMQNFELLKEVGKTKKPILLKRGMSATLEEWLY 152 (266)
T ss_pred CcHHHHHHHHHHHHHHcCCCEEEeeCChhhHHHHHHh-CCEEEECcccccCHHHHHHHhcCCCcEEEeCCCCCCHHHHHH
Confidence 3668999999999999999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred HHHHHHh-cCCCCceeecccCCCCCCCCcccccCceEEeeecCCCCCCccCCCchHHHHHHHHCCCCCeec-CCCCCC--
Q psy17999 125 IYTTVKQ-YHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYPTPYHDINLNVIHTLRSRYPDIPIGY-SGHENG-- 200 (335)
Q Consensus 125 Av~~i~~-g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~s~YP~~~~~~nL~~i~~L~~~fp~~pVG~-SdHt~g-- 200 (335)
|++++.+ ||. +++||+||++ |+++|| .+++||+.|+.||++| ++|||| |||+.|
T Consensus 153 A~e~i~~~Gn~--~i~L~~rG~~-----------------t~~~Y~--~~~vdl~~i~~lk~~~-~~pV~~D~sHs~G~~ 210 (266)
T PRK13398 153 AAEYIMSEGNE--NVVLCERGIR-----------------TFETYT--RNTLDLAAVAVIKELS-HLPIIVDPSHATGRR 210 (266)
T ss_pred HHHHHHhcCCC--eEEEEECCCC-----------------CCCCCC--HHHHHHHHHHHHHhcc-CCCEEEeCCCcccch
Confidence 9999998 887 5666666654 256888 6689999999999999 899999 999999
Q ss_pred ---hHHHHHHHHcCCc--EEEeccCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHh
Q psy17999 201 ---VHVCYAAVAMGAQ--IIEKHFTLDKSWKGSDHASSLTPPELKALVTGIRDIEQSL 253 (335)
Q Consensus 201 ---~~~~~aAvalGA~--vIEkH~tld~~~~G~Dh~~Sl~p~el~~lv~~ir~~~~al 253 (335)
..+++||+|+||+ +||+|||+||+++ ||.+||+|+||++|++.+|.++++|
T Consensus 211 ~~v~~~~~aAva~Ga~Gl~iE~H~~pd~a~~--D~~~sl~p~~l~~l~~~i~~~~~~~ 266 (266)
T PRK13398 211 ELVIPMAKAAIAAGADGLMIEVHPEPEKALS--DARQTLNFEEMKELVDELKPMAKAL 266 (266)
T ss_pred hhHHHHHHHHHHcCCCEEEEeccCCccccCC--chhhcCCHHHHHHHHHHHHHHHhhC
Confidence 8899999999999 9999999999994 9999999999999999999998764
No 11
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.8e-33 Score=262.08 Aligned_cols=184 Identities=22% Similarity=0.396 Sum_probs=172.2
Q ss_pred cCCHHHHHHHHHHHHHcCCceEeccCChhhHHHHHhCCCCEEEEcCCCCCCHHHHHHHHhcCCcEEEeCCCCCCHHHHHH
Q psy17999 45 EFSQEEYVMLQQCADQVDIMFTASAMDQVSFDFLLSANVPFIKIGSGDSNNIPLIKYAASKQKPLIISTGMLPSIEHVDN 124 (335)
Q Consensus 45 el~~e~~~~L~~~~~~~Gi~f~stpfd~~svd~l~~l~v~~~KIaS~d~~n~~LL~~~a~~gkPvilStG~~~tl~Ei~~ 124 (335)
.+.++.+.+|.+.++++|+.+++.+.|++.++...++ +|+++||+++|+|++||+++++.+|||+|++||+.|++||..
T Consensus 92 Glge~gL~~l~~a~~~~Gl~vvtEvm~~~~~e~~~~y-~DilqvGARNMQNF~LLke~G~~~kPvLLKRg~~aTieEwL~ 170 (286)
T COG2876 92 GLGEEGLKLLKRAADETGLPVVTEVMDVRDVEAAAEY-ADILQVGARNMQNFALLKEVGRQNKPVLLKRGLSATIEEWLN 170 (286)
T ss_pred ccCHHHHHHHHHHHHHcCCeeEEEecCHHHHHHHHhh-hhHHHhcccchhhhHHHHHhcccCCCeEEecCccccHHHHHH
Confidence 3778999999999999999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred HHHHHHh-cCCCCceeecccCCCCCCCCcccccCceEEeeecCCCCCCc-cCCCchHHHHHHHHCCCCCe-ecCCCCCC-
Q psy17999 125 IYTTVKQ-YHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYPTPY-HDINLNVIHTLRSRYPDIPI-GYSGHENG- 200 (335)
Q Consensus 125 Av~~i~~-g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~s~YP~~~-~~~nL~~i~~L~~~fp~~pV-G~SdHt~g- 200 (335)
|+++|.+ ||. ++||||||++|. -+.. +.+|+++++.+|+.. ++|| ..++|..|
T Consensus 171 AAEYI~s~GN~--~vILCERGIRtf--------------------e~~TRntLDi~aV~~~kq~T-HLPVivDpSH~~Gr 227 (286)
T COG2876 171 AAEYILSHGNG--NVILCERGIRTF--------------------EKATRNTLDISAVPILKQET-HLPVIVDPSHATGR 227 (286)
T ss_pred HHHHHHhCCCC--cEEEEecccccc--------------------cccccceechHHHHHHHhhc-CCCEEECCCCcccc
Confidence 9999999 888 999999999954 3222 689999999999999 9999 78999999
Q ss_pred ----hHHHHHHHHcCCc--EEEeccCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhC
Q psy17999 201 ----VHVCYAAVAMGAQ--IIEKHFTLDKSWKGSDHASSLTPPELKALVTGIRDIEQSLG 254 (335)
Q Consensus 201 ----~~~~~aAvalGA~--vIEkH~tld~~~~G~Dh~~Sl~p~el~~lv~~ir~~~~alG 254 (335)
..++.||+|.||+ +||-|..++++++ |..++|+|++|+++++.++.+..++|
T Consensus 228 r~lv~pla~AA~AaGAdglmiEVHp~P~~Als--D~~Qql~~~~f~~l~~~~~~~~~~~~ 285 (286)
T COG2876 228 RDLVEPLAKAAIAAGADGLMIEVHPDPEKALS--DAKQQLTPEEFEELVKELRALADALG 285 (286)
T ss_pred hhhHHHHHHHHHhccCCeeEEEecCCcccccC--cccccCCHHHHHHHHHHHHHHhhhcc
Confidence 5678899999999 9999999999999 99999999999999999999887765
No 12
>TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase. In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide.
Probab=100.00 E-value=9.8e-32 Score=250.90 Aligned_cols=192 Identities=19% Similarity=0.224 Sum_probs=173.2
Q ss_pred CCCCCCCCCcccHHHHHHhhcCC-HHHHHHHHHHHHHcCCceEeccCChhhHHHHHhCCCCEEEEcCCCCCCHHHHHHHH
Q psy17999 25 RPYLSPHAWANTYGQHKQHLEFS-QEEYVMLQQCADQVDIMFTASAMDQVSFDFLLSANVPFIKIGSGDSNNIPLIKYAA 103 (335)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~el~-~e~~~~L~~~~~~~Gi~f~stpfd~~svd~l~~l~v~~~KIaS~d~~n~~LL~~~a 103 (335)
+|.++|++|. .+. ++.+++|.+..+++|+++++.++++..++.+.++ +|+++|+++++.|++||+++|
T Consensus 45 apRTsp~sFq----------G~G~eeGL~iL~~vk~~~glpvvTeV~~~~~~~~vae~-vDilQIgArn~rn~~LL~a~g 113 (258)
T TIGR01362 45 ANRSSIHSFR----------GPGLEEGLKILQKVKEEFGVPILTDVHESSQCEPVAEV-VDIIQIPAFLCRQTDLLVAAA 113 (258)
T ss_pred CCCCCCCCCC----------CCCHHHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhh-CcEEEeCchhcchHHHHHHHh
Confidence 4666665442 377 6899999999999999999999999999999999 999999999999999999999
Q ss_pred hcCCcEEEeCCCCCCHHHHHHHHHHHHh-cCCCCceeecccCCCCCCCCcccccCceEEeeecCCCCCCccCCCchHHHH
Q psy17999 104 SKQKPLIISTGMLPSIEHVDNIYTTVKQ-YHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYPTPYHDINLNVIHT 182 (335)
Q Consensus 104 ~~gkPvilStG~~~tl~Ei~~Av~~i~~-g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~s~YP~~~~~~nL~~i~~ 182 (335)
++||||+|++|+++|++||..|++++.+ ||. +|+|||||+.++|. ...+|+++++.
T Consensus 114 ~t~kpV~lKrG~~~t~~e~l~aaeyi~~~Gn~--~viLcERG~tf~y~---------------------r~~~D~~~ip~ 170 (258)
T TIGR01362 114 KTGRIVNVKKGQFLSPWDMKNVVEKVLSTGNK--NILLCERGTSFGYN---------------------NLVVDMRSLPI 170 (258)
T ss_pred ccCCeEEecCCCcCCHHHHHHHHHHHHHcCCC--cEEEEeCCCCcCCC---------------------CcccchhhhHH
Confidence 9999999999999999999999999999 888 99999999976542 23689999999
Q ss_pred HHHHCCCCCe-ecCCCC-----------CC-----hHHHHHHHHcCCc--EEEeccCCCCCCCCCCCCCCCCHHHHHHHH
Q psy17999 183 LRSRYPDIPI-GYSGHE-----------NG-----VHVCYAAVAMGAQ--IIEKHFTLDKSWKGSDHASSLTPPELKALV 243 (335)
Q Consensus 183 L~~~fp~~pV-G~SdHt-----------~g-----~~~~~aAvalGA~--vIEkH~tld~~~~G~Dh~~Sl~p~el~~lv 243 (335)
||+ + ++|| -.++|+ .| ..+++||+|.||+ +||-|..+|+++. |..++|+|++|+.|+
T Consensus 171 ~k~-~-~~PVi~DpSHsvq~pg~~g~~s~G~r~~v~~la~AAvA~GaDGl~iEvHpdP~~Als--Dg~q~l~~~~~~~ll 246 (258)
T TIGR01362 171 MRE-L-GCPVIFDATHSVQQPGGLGGASGGLREFVPTLARAAVAVGIDGLFMETHPDPKNAKS--DGPNMLPLSELEGLL 246 (258)
T ss_pred HHh-c-CCCEEEeCCccccCCCCCCCCCCCcHHHHHHHHHHHHHhCCCEEEEEeCCCccccCC--CccccCCHHHHHHHH
Confidence 997 5 8999 568998 56 6678999999999 9999999999999 999999999999999
Q ss_pred HHHHHHHHHhC
Q psy17999 244 TGIRDIEQSLG 254 (335)
Q Consensus 244 ~~ir~~~~alG 254 (335)
+.++.+..+..
T Consensus 247 ~~l~~i~~~~~ 257 (258)
T TIGR01362 247 EKLLAIDALTK 257 (258)
T ss_pred HHHHHHHHHhh
Confidence 99999987753
No 13
>PRK05198 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=100.00 E-value=1.1e-31 Score=251.30 Aligned_cols=180 Identities=19% Similarity=0.236 Sum_probs=166.4
Q ss_pred cCC-HHHHHHHHHHHHHcCCceEeccCChhhHHHHHhCCCCEEEEcCCCCCCHHHHHHHHhcCCcEEEeCCCCCCHHHHH
Q psy17999 45 EFS-QEEYVMLQQCADQVDIMFTASAMDQVSFDFLLSANVPFIKIGSGDSNNIPLIKYAASKQKPLIISTGMLPSIEHVD 123 (335)
Q Consensus 45 el~-~e~~~~L~~~~~~~Gi~f~stpfd~~svd~l~~l~v~~~KIaS~d~~n~~LL~~~a~~gkPvilStG~~~tl~Ei~ 123 (335)
.+. ++.+++|.+..+++|+++++.+++++.++.+.++ +|+++|+++++.|++||+++|++||||+|++|+++|++||.
T Consensus 63 G~G~eeGL~~L~~vk~~~GlpvvTeV~~~~~~~~v~~~-~DilQIgArn~rn~~LL~a~g~t~kpV~lKrG~~~t~~e~~ 141 (264)
T PRK05198 63 GPGLEEGLKILQEVKETFGVPVLTDVHEPEQAAPVAEV-VDVLQIPAFLCRQTDLLVAAAKTGKVVNIKKGQFLAPWDMK 141 (264)
T ss_pred CCChHHHHHHHHHHHHHHCCceEEEeCCHHHHHHHHhh-CcEEEECchhcchHHHHHHHhccCCeEEecCCCcCCHHHHH
Confidence 377 7899999999999999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred HHHHHHHh-cCCCCceeecccCCCCCCCCcccccCceEEeeecCCCCCCccCCCchHHHHHHHHCCCCCe-ecCCCC---
Q psy17999 124 NIYTTVKQ-YHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYPTPYHDINLNVIHTLRSRYPDIPI-GYSGHE--- 198 (335)
Q Consensus 124 ~Av~~i~~-g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~s~YP~~~~~~nL~~i~~L~~~fp~~pV-G~SdHt--- 198 (335)
.|++++.+ ||. +|+|||||+.++|. ...+|+++++.|++ + ++|| -.++|+
T Consensus 142 ~aaeyi~~~Gn~--~vilcERG~tf~y~---------------------r~~~D~~~vp~~k~-~-~lPVi~DpSHsvq~ 196 (264)
T PRK05198 142 NVVDKVREAGND--KIILCERGTSFGYN---------------------NLVVDMRGLPIMRE-T-GAPVIFDATHSVQL 196 (264)
T ss_pred HHHHHHHHcCCC--eEEEEeCCCCcCCC---------------------CeeechhhhHHHhh-C-CCCEEEeCCccccC
Confidence 99999999 888 99999999976542 23589999999997 5 6999 568998
Q ss_pred --------CC-----hHHHHHHHHcCCc--EEEeccCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q psy17999 199 --------NG-----VHVCYAAVAMGAQ--IIEKHFTLDKSWKGSDHASSLTPPELKALVTGIRDIEQS 252 (335)
Q Consensus 199 --------~g-----~~~~~aAvalGA~--vIEkH~tld~~~~G~Dh~~Sl~p~el~~lv~~ir~~~~a 252 (335)
.| ..+++||+|.||+ +||-|..+++++. |..++|+|++|++|++.++.++.+
T Consensus 197 pg~~~~~s~G~r~~v~~la~AAvA~GadGl~iEvHpdP~~Als--Dg~q~l~~~~~~~ll~~l~~i~~~ 263 (264)
T PRK05198 197 PGGQGGSSGGQREFVPVLARAAVAVGVAGLFIETHPDPDNALS--DGPNMLPLDKLEPLLEQLKAIDDL 263 (264)
T ss_pred CCCCCCCCCCcHHHHHHHHHHHHHcCCCEEEEEeCCCccccCC--CccccCCHHHHHHHHHHHHHHHhh
Confidence 56 6678999999999 9999999999999 999999999999999999998865
No 14
>PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=100.00 E-value=1.4e-31 Score=252.20 Aligned_cols=184 Identities=13% Similarity=0.229 Sum_probs=171.2
Q ss_pred CC-HHHHHHHHHHHHHcCCceEeccCChhhHHHHHhCCCCEEEEcCCCCCCHHHHHHHHhcCCcEEEeCCCCCCHHHHHH
Q psy17999 46 FS-QEEYVMLQQCADQVDIMFTASAMDQVSFDFLLSANVPFIKIGSGDSNNIPLIKYAASKQKPLIISTGMLPSIEHVDN 124 (335)
Q Consensus 46 l~-~e~~~~L~~~~~~~Gi~f~stpfd~~svd~l~~l~v~~~KIaS~d~~n~~LL~~~a~~gkPvilStG~~~tl~Ei~~ 124 (335)
+. ++.+++|.+..+++|+.+++.+.+.+.++.+.++ +|++||+++.+.|++||+++|++||||+|++|++++++||..
T Consensus 70 ~G~eeGL~iL~~vk~~~GlpvvTeV~~~~~~~~~ae~-vDilQIgAr~~rntdLL~a~~~t~kpV~lKrGqf~s~~e~~~ 148 (281)
T PRK12457 70 VGLDEGLRIFEEVKARFGVPVITDVHEVEQAAPVAEV-ADVLQVPAFLARQTDLVVAIAKTGKPVNIKKPQFMSPTQMKH 148 (281)
T ss_pred CCHHHHHHHHHHHHHHHCCceEEEeCCHHHHHHHhhh-CeEEeeCchhhchHHHHHHHhccCCeEEecCCCcCCHHHHHH
Confidence 77 7899999999999999999999999999999999 999999999999999999999999999999998889999999
Q ss_pred HHHHHHh-cCCCCceeecccCCCCCCCCcccccCceEEeeecCCCCCCccCCCchHHHHHHHHCCCCCee-cCCCC----
Q psy17999 125 IYTTVKQ-YHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYPTPYHDINLNVIHTLRSRYPDIPIG-YSGHE---- 198 (335)
Q Consensus 125 Av~~i~~-g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~s~YP~~~~~~nL~~i~~L~~~fp~~pVG-~SdHt---- 198 (335)
|++++.+ ||. +|+|||||++++|. . ..+|++.|+.||+.++++||. .++|+
T Consensus 149 aae~i~~~Gn~--~vilcERG~~fgy~-------------------~--~~~D~~~ip~mk~~~t~lPVi~DpSHsvq~p 205 (281)
T PRK12457 149 VVSKCREAGND--RVILCERGSSFGYD-------------------N--LVVDMLGFRQMKRTTGDLPVIFDVTHSLQCR 205 (281)
T ss_pred HHHHHHHcCCC--eEEEEeCCCCCCCC-------------------C--cccchHHHHHHHhhCCCCCEEEeCCccccCC
Confidence 9999999 888 99999999997653 1 269999999999976699995 58997
Q ss_pred -------CC-----hHHHHHHHHcCCc--EEEeccCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCC
Q psy17999 199 -------NG-----VHVCYAAVAMGAQ--IIEKHFTLDKSWKGSDHASSLTPPELKALVTGIRDIEQSLGS 255 (335)
Q Consensus 199 -------~g-----~~~~~aAvalGA~--vIEkH~tld~~~~G~Dh~~Sl~p~el~~lv~~ir~~~~alG~ 255 (335)
.| ..++.||+|.||+ +||-|..+|+++. |..++|+|++|++|++.++.++.+++.
T Consensus 206 ~~~g~~s~G~re~v~~larAAvA~GaDGl~iEvHpdP~~Als--Dg~q~l~~~~~~~l~~~l~~i~~~~~~ 274 (281)
T PRK12457 206 DPLGAASGGRRRQVLDLARAGMAVGLAGLFLEAHPDPDRARC--DGPSALPLDQLEPFLSQVKALDDLVKS 274 (281)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCEEEEEecCCccccCC--CcccccCHHHHHHHHHHHHHHHHHHcc
Confidence 55 6678999999999 9999999999999 999999999999999999999998775
No 15
>PLN03033 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=99.98 E-value=5e-31 Score=248.58 Aligned_cols=194 Identities=15% Similarity=0.140 Sum_probs=175.3
Q ss_pred CCCCCCCCCCcccHHHHHHhhcCC-HHHHHHHHHHHHHcCCceEeccCChhhHHHHHhCCCCEEEEcCCCCCCHHHHHHH
Q psy17999 24 DRPYLSPHAWANTYGQHKQHLEFS-QEEYVMLQQCADQVDIMFTASAMDQVSFDFLLSANVPFIKIGSGDSNNIPLIKYA 102 (335)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~el~-~e~~~~L~~~~~~~Gi~f~stpfd~~svd~l~~l~v~~~KIaS~d~~n~~LL~~~ 102 (335)
++|.+++++|. .+. ++.+++|.+..+++|+++++.+.|.+.++.+.++ +|+++|+++.+.|++||+++
T Consensus 58 KApRTSp~sFr----------G~G~eeGL~iL~~vk~~~glpvvTeV~~~~q~~~vae~-~DilQIgAr~~rqtdLL~a~ 126 (290)
T PLN03033 58 KANRTSSKSFR----------GPGMAEGLKILEKVKVAYDLPIVTDVHESSQCEAVGKV-ADIIQIPAFLCRQTDLLVAA 126 (290)
T ss_pred CCCCCCCCCCC----------CCCHHHHHHHHHHHHHHHCCceEEeeCCHHHHHHHHhh-CcEEeeCcHHHHHHHHHHHH
Confidence 34666665542 367 7899999999999999999999999999999999 89999999999999999999
Q ss_pred HhcCCcEEEeCCCCCCHHHHHHHHHHHHh-cCCCCceeecccCCCCCCCCcccccCceEEeeecCCCCCCccCCCchHHH
Q psy17999 103 ASKQKPLIISTGMLPSIEHVDNIYTTVKQ-YHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYPTPYHDINLNVIH 181 (335)
Q Consensus 103 a~~gkPvilStG~~~tl~Ei~~Av~~i~~-g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~s~YP~~~~~~nL~~i~ 181 (335)
|++||||+|++|++++++||..|++++.+ ||. +|+|||||+.++|. ...+|+++++
T Consensus 127 ~~tgkpV~lKkGq~~t~~e~~~aaeki~~~GN~--~viLcERG~tFgy~---------------------~lv~D~r~ip 183 (290)
T PLN03033 127 AKTGKIINIKKGQFCAPSVMRNSAEKVRLAGNP--NVMVCERGTMFGYN---------------------DLIVDPRNLE 183 (290)
T ss_pred HccCCeEEeCCCCCCCHHHHHHHHHHHHHcCCC--cEEEEeCCCCcCCC---------------------CcccchhhhH
Confidence 99999999999999999999999999999 888 99999999977653 1258999999
Q ss_pred HHHHHCCCCCee-cCCCC----------------CC-----hHHHHHHHHcCCc--EEEeccCCCCCCCCCCCCCCCCHH
Q psy17999 182 TLRSRYPDIPIG-YSGHE----------------NG-----VHVCYAAVAMGAQ--IIEKHFTLDKSWKGSDHASSLTPP 237 (335)
Q Consensus 182 ~L~~~fp~~pVG-~SdHt----------------~g-----~~~~~aAvalGA~--vIEkH~tld~~~~G~Dh~~Sl~p~ 237 (335)
.||+ + ++||. .++|+ .| ..+++||+|.||+ +||-|..+|+++. |..++|+|+
T Consensus 184 ~mk~-~-~lPVI~DpSHsvQ~pg~~~~~~~g~~s~G~Re~V~~larAAvA~GaDGlfiEvHpdP~~Als--Dg~q~l~~~ 259 (290)
T PLN03033 184 WMRE-A-NCPVVADITHSLQQPAGKKLDGGGVASGGLRELIPCIARTAVAVGVDGIFMEVHDDPLSAPV--DGPTQWPLR 259 (290)
T ss_pred HHHh-c-CCCEEEeCCccccCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCEEEEEecCCccccCC--CcccCcCHH
Confidence 9995 6 99995 58996 45 6678999999999 9999999999999 999999999
Q ss_pred HHHHHHHHHHHHHHHhCC
Q psy17999 238 ELKALVTGIRDIEQSLGS 255 (335)
Q Consensus 238 el~~lv~~ir~~~~alG~ 255 (335)
+|+.|++.++.+..+.+.
T Consensus 260 ~l~~ll~~l~~i~~~~~~ 277 (290)
T PLN03033 260 HLEELLEELIAIARVTKG 277 (290)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 999999999999998875
No 16
>PF00793 DAHP_synth_1: DAHP synthetase I family; InterPro: IPR006218 Members of the 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthetase family catalyse the first step in aromatic amino acid biosynthesis from chorismate. Class I includes bacterial and yeast enzymes; class II includes higher plants and various microorganisms (see IPR002480 from INTERPRO) []. The first step in the common pathway leading to the biosynthesis of aromatic compounds is the stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP). This reaction is catalyzed by DAHP synthase, a metal-activated enzyme, which in microorganisms is the target for negative-feedback regulation by pathway intermediates or by end products. In Escherichia coli there are three DAHP synthetase isoforms, each specifically inhibited by one of the three aromatic amino acids. The crystal structure of the phenylalanine-regulated form of DAHP synthetase shows the fold as is a (beta/alpha)8 barrel with several additional beta strands and alpha helices []. ; GO: 0009058 biosynthetic process; PDB: 3FS2_B 3STF_B 3FYP_D 3QQ1_A 3QPZ_C 3FYO_D 3STC_A 2QKF_D 3STE_C 3QQ0_A ....
Probab=99.86 E-value=1.5e-21 Score=185.68 Aligned_cols=182 Identities=18% Similarity=0.279 Sum_probs=161.3
Q ss_pred CCHHH-HHHHHHHHHHcCCceEeccCChhhHHHHHhCCCCEEEEcCCCCCCHHHHHHHHhcCCcEEEeCCCCCCHHHHHH
Q psy17999 46 FSQEE-YVMLQQCADQVDIMFTASAMDQVSFDFLLSANVPFIKIGSGDSNNIPLIKYAASKQKPLIISTGMLPSIEHVDN 124 (335)
Q Consensus 46 l~~e~-~~~L~~~~~~~Gi~f~stpfd~~svd~l~~l~v~~~KIaS~d~~n~~LL~~~a~~gkPvilStG~~~tl~Ei~~ 124 (335)
+..+. +..|.+..+++|+++.+++.|+..++++.++ +|+++||++.+.|.+|++.++++++||.+++|+.++++||..
T Consensus 71 ~g~d~~L~~l~~v~~~~glpv~tEv~~~~~~~~~~d~-vd~lqIgAr~~~n~~ll~~as~~~~pV~~K~g~~~ai~~~~~ 149 (270)
T PF00793_consen 71 LGLDPGLDILSEVKEGLGLPVATEVLDPEQAEYVADL-VDWLQIGARLMENQDLLEAASGTGKPVGFKNGTFAAIDEWLA 149 (270)
T ss_dssp STHHHHHHHHHHHHHHHT-EEEEEESSGGGHHHHHTT-ESEEEE-GGGTTCHHHHHHHHCTSSEEEEEE-TTSHGGGHHH
T ss_pred CCCCccchhHHHHHhhhCCeeeEEecCcccHHHHHhc-CcEEEECcchhcCHHHHHHhccCCCeEEeccCCccCHHHHHH
Confidence 55566 9999999999999999999999999999999 999999999999999999999999999999998889999999
Q ss_pred HHHHHHh-c-CCCCceeecccCCCCCCCCcccccCceEEeeecCCCCCCccCCCchHHHHHHHHCCCCCe-ecCCCCCC-
Q psy17999 125 IYTTVKQ-Y-HSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYPTPYHDINLNVIHTLRSRYPDIPI-GYSGHENG- 200 (335)
Q Consensus 125 Av~~i~~-g-~~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~s~YP~~~~~~nL~~i~~L~~~fp~~pV-G~SdHt~g- 200 (335)
|++.+.. | |. ++++|+||+++++ ...+..+|++.+..+++.. ++|| ...+|..+
T Consensus 150 Aae~~~~~G~n~--~~~l~erglr~g~-------------------~~n~~~~di~~~~~~~~~~-~lpVivD~SH~~~~ 207 (270)
T PF00793_consen 150 AAEKHLFLGINS--GNILCERGLRGGY-------------------GPNYNVLDIAAVPIMKKKT-HLPVIVDPSHANSR 207 (270)
T ss_dssp HHHHHHHTTECS--SEEEEEEEEEESS-------------------SSSSEEHHTTHHHHHHHHT-SSEEEEEHHHHTTT
T ss_pred HHhhhhhhcCCC--CCeeeeeeeeccc-------------------cccccchhHHHHHHHHHhc-CCCEEECchhhhcc
Confidence 9999998 8 77 8999999999763 2334678999999999998 8999 56888765
Q ss_pred ---------hHHHHHHHHcCCc--EEEeccCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q psy17999 201 ---------VHVCYAAVAMGAQ--IIEKHFTLDKSWKGSDHASSLTPPELKALVTGIRDIEQS 252 (335)
Q Consensus 201 ---------~~~~~aAvalGA~--vIEkH~tld~~~~G~Dh~~Sl~p~el~~lv~~ir~~~~a 252 (335)
...+.+|++.|++ +||-|+.+++++. |..++|+++++.+++....++...
T Consensus 208 ~~~~~q~~V~~~a~aaia~GidGlmiEsH~~p~~a~~--d~~~~l~~~~~~~~~~~~~~~~~~ 268 (270)
T PF00793_consen 208 KDGGRQELVPPLARAAIAAGIDGLMIESHPDPGKALS--DGPQQLTYGQSITLLCILWEITEI 268 (270)
T ss_dssp CGGGGHCGHHHHHHHHHHHTESEEEEEEESSGGGTSS--SGGGSEEGGGHHHHHHHHHHHHHH
T ss_pred ccCCchhhHHHHHHHHHhhcCCEEEEeecCCcccCCC--CCccCCCcchhHHHHHHHHHHHHH
Confidence 4467899999998 9999999999999 899999999999999888777654
No 17
>COG2877 KdsA 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase [Cell envelope biogenesis, outer membrane]
Probab=99.81 E-value=4.4e-19 Score=163.58 Aligned_cols=177 Identities=19% Similarity=0.281 Sum_probs=161.7
Q ss_pred HHHHHHHHHHHHHcCCceEeccCChhhHHHHHhCCCCEEEEcCCCCCCHHHHHHHHhcCCcEEEeCCCCCCHHHHHHHHH
Q psy17999 48 QEEYVMLQQCADQVDIMFTASAMDQVSFDFLLSANVPFIKIGSGDSNNIPLIKYAASKQKPLIISTGMLPSIEHVDNIYT 127 (335)
Q Consensus 48 ~e~~~~L~~~~~~~Gi~f~stpfd~~svd~l~~l~v~~~KIaS~d~~n~~LL~~~a~~gkPvilStG~~~tl~Ei~~Av~ 127 (335)
++.++.|.+..++.|+++++.+..+.......+. ||+++|+..-+...+||.++|+||++|-++.|..+++.++...++
T Consensus 74 eeglki~~~vK~efgv~ilTDVHe~~q~~~vA~V-vDilQiPAFLcRQTDLl~A~AkTg~~vNiKKgQFLaPwdMknvv~ 152 (279)
T COG2877 74 EEGLKILQEVKEEFGVPILTDVHEPSQAQPVAEV-VDVLQIPAFLCRQTDLLVAAAKTGAVVNVKKGQFLAPWDMKNIVE 152 (279)
T ss_pred HHHHHHHHHHHHHcCCceeeccCChhhcchHHhh-hhhhcchHHHhhhHHHHHHHHHhCCeEeeccccccChhHhhhHHH
Confidence 3679999999999999999999999999999998 999999999999999999999999999999999999999999999
Q ss_pred HHHh-cCCCCceeecccCCCCCCCCcccccCceEEeeecCCCCCCccCCCchHHHHHHHHCCCCCeec-CCCCC------
Q psy17999 128 TVKQ-YHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYPTPYHDINLNVIHTLRSRYPDIPIGY-SGHEN------ 199 (335)
Q Consensus 128 ~i~~-g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~s~YP~~~~~~nL~~i~~L~~~fp~~pVG~-SdHt~------ 199 (335)
.+.+ ||+ +|++||||.++||. +| -+|++.++.||+ + +.||.| ..|+.
T Consensus 153 K~~~~gn~--~v~lcERG~sFGYn-------nL--------------V~DMrsl~iM~~-~-~~PViFDaTHSvQ~pgg~ 207 (279)
T COG2877 153 KFLETGNN--KVILCERGASFGYN-------NL--------------VVDMRSLPIMKE-F-GAPVIFDATHSVQQPGGQ 207 (279)
T ss_pred HHHhcCCC--cEEEEeccCccCcc-------hh--------------HHHhhhhHHHHH-c-CCCeEEecccceeCCCCC
Confidence 9988 888 99999999999985 33 489999999997 6 799987 46763
Q ss_pred -----C-----hHHHHHHHHcCCc--EEEeccCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q psy17999 200 -----G-----VHVCYAAVAMGAQ--IIEKHFTLDKSWKGSDHASSLTPPELKALVTGIRDIEQS 252 (335)
Q Consensus 200 -----g-----~~~~~aAvalGA~--vIEkH~tld~~~~G~Dh~~Sl~p~el~~lv~~ir~~~~a 252 (335)
| ...++||+|-|.. +||.|..++.+.. |.+..|..++|+.++..+.++...
T Consensus 208 g~~SGG~refv~~LaRAa~AvGvaGlF~EtHpdP~~A~s--Dgp~mlpL~~le~ll~~l~~~d~l 270 (279)
T COG2877 208 GGSSGGRREFVPTLARAAVAVGVAGLFIETHPDPDNAKS--DGPNMLPLDKLEALLEQLKAIDDL 270 (279)
T ss_pred CCCCCCcchhHHHHHHHHHHhccceEEEeccCCcccCCC--CCccccCHHHHHHHHHHHHHHHHH
Confidence 2 5678999999998 9999999999988 999999999999999999888765
No 18
>PRK09261 phospho-2-dehydro-3-deoxyheptonate aldolase; Validated
Probab=99.31 E-value=1.5e-11 Score=120.34 Aligned_cols=149 Identities=12% Similarity=0.119 Sum_probs=124.9
Q ss_pred HHHHHHHHHH---HHHcCCceEeccCChhhHHHHHhCCCCEEEEcCCCCCCHHHHHHHHhcCCcEEEeCCCCCCHHHHHH
Q psy17999 48 QEEYVMLQQC---ADQVDIMFTASAMDQVSFDFLLSANVPFIKIGSGDSNNIPLIKYAASKQKPLIISTGMLPSIEHVDN 124 (335)
Q Consensus 48 ~e~~~~L~~~---~~~~Gi~f~stpfd~~svd~l~~l~v~~~KIaS~d~~n~~LL~~~a~~gkPvilStG~~~tl~Ei~~ 124 (335)
.+.++.+++. ..+.|+++.+++.|+..++++.++ ++...||++.+.|..+++.++.+++||.+++|++++++++..
T Consensus 120 ~~GL~~~R~ll~~~~e~GlpvatE~ld~~~~~y~~dl-vs~~~IGARt~esq~hr~~asg~~~PVg~Kng~~g~i~~~l~ 198 (349)
T PRK09261 120 NDGLRIARKLLLDINELGLPAATEFLDPITPQYIADL-ISWGAIGARTTESQVHRELASGLSCPVGFKNGTDGNIKVAID 198 (349)
T ss_pred HHHHHHHHHHHHHHHHhCCCeEEEecccccHHHHHhh-cceeeeccchhcCHHHHHHhcCCCCeeEecCCCCCCHHHHHh
Confidence 3556666665 799999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred HH------------------HHHHh-cCCCCceeecccCCCCCCCCcccccCceEEeeecCCCCCCc-cCCCchHHHHHH
Q psy17999 125 IY------------------TTVKQ-YHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYPTPY-HDINLNVIHTLR 184 (335)
Q Consensus 125 Av------------------~~i~~-g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~s~YP~~~-~~~nL~~i~~L~ 184 (335)
|+ +++.. ||+ +..+|+||.++ +|.-. +++++......+
T Consensus 199 Ai~aa~~~H~fl~~~~~G~~~~i~t~GN~--~~hlilRGg~~--------------------~pNy~~~~i~~~~~~l~k 256 (349)
T PRK09261 199 AIIAASAPHHFLGITKDGRSAIVSTTGNP--DCHVILRGGNK--------------------GPNYDAESVAEAKERLEK 256 (349)
T ss_pred HHHHHhCCceeeecCCCCcEEEEECCCCC--CEEEEECCCCC--------------------CCCCCHHHHHHHHHHHHH
Confidence 98 55666 888 89999999763 35333 788888888777
Q ss_pred HHCCCCCe-ecCCCCCCh----------HHHHHHHHcCCc-----EEEeccC
Q psy17999 185 SRYPDIPI-GYSGHENGV----------HVCYAAVAMGAQ-----IIEKHFT 220 (335)
Q Consensus 185 ~~fp~~pV-G~SdHt~g~----------~~~~aAvalGA~-----vIEkH~t 220 (335)
... +.|| ...+|..+. ....++++.|++ +||-|+.
T Consensus 257 ~~l-~~~v~VD~SH~ns~k~~~~Q~~V~~~v~~qi~~G~~~I~GvMiES~l~ 307 (349)
T PRK09261 257 AGL-PPRIMIDCSHANSGKDHKRQPEVARDVAAQIAAGNKAIIGVMIESHLV 307 (349)
T ss_pred cCC-CCCEEEECCCcccCcchhhhHHHHHHHHHHHHcCCccceEEEEEEecC
Confidence 766 5666 789997762 223577889987 9999965
No 19
>PF08666 SAF: SAF domain; InterPro: IPR013974 This entry includes a range of different proteins, such as antifreeze proteins, flagellar FlgA proteins, and CpaB pilus proteins. ; PDB: 1C89_A 3NLA_A 3RDN_A 1C8A_A 3FRN_A 1WVO_A 3K3S_H 3G8R_B 1XUU_A 1XUZ_A ....
Probab=99.04 E-value=1.9e-10 Score=85.24 Aligned_cols=59 Identities=31% Similarity=0.456 Sum_probs=50.6
Q ss_pred eEEEEeecCCCCcccccCCcEEeeCC---CCCCCcchHHHHhcchhhcccCCCCcccCCCCC
Q psy17999 273 KCIVSSCDIQAGTVLQEFHVCIKVAE---PKGICGTRYASVMGRKVNRDIRRDESIQDIDLD 331 (335)
Q Consensus 273 rsl~a~~di~~G~~l~~~dl~~kr~~---~~Gi~p~~~~~viG~~~~~di~~~~~i~~~~l~ 331 (335)
+.++|++||++|++|+.+|+++++.+ +.|+.+..+.+++|++++++|.+|++|+|++|+
T Consensus 2 ~vvVA~~di~~G~~i~~~dl~~~~~~~~~~~~~~~~~~~~~~G~~a~~~i~~G~~i~~~~le 63 (63)
T PF08666_consen 2 RVVVAARDIPAGTVITAEDLTLVRVPADLPPGIFPDDIEEVVGKVARRDIPAGEPITPSMLE 63 (63)
T ss_dssp SEEEESSTB-TT-BECTTTEEEESCSCTSSTSSBCGGHHHHTTEBBSS-B-TTEBEBGGGBT
T ss_pred cEEEEeCccCCCCEEccCCEEEEEccccCCcccccccccceeCceEeeEeCCcCEEcHHHcC
Confidence 57999999999999999999999876 368888889999999999999999999999885
No 20
>TIGR00034 aroFGH phospho-2-dehydro-3-deoxyheptonate aldolase.
Probab=99.03 E-value=7.1e-09 Score=101.54 Aligned_cols=152 Identities=13% Similarity=0.135 Sum_probs=122.0
Q ss_pred HHHHHHHHHHH---HHcCCceEeccCChhhHHHHHhCCCCEEEEcCCCCCCHHHHHHHH-hcCCcEEEeCCCCCCHHHHH
Q psy17999 48 QEEYVMLQQCA---DQVDIMFTASAMDQVSFDFLLSANVPFIKIGSGDSNNIPLIKYAA-SKQKPLIISTGMLPSIEHVD 123 (335)
Q Consensus 48 ~e~~~~L~~~~---~~~Gi~f~stpfd~~svd~l~~l~v~~~KIaS~d~~n~~LL~~~a-~~gkPvilStG~~~tl~Ei~ 123 (335)
.+.++.+++.. .+.|+++.++..|+...+++.++ ++...||++.+.|..+ +++| ...+||.+++|.+++++++.
T Consensus 115 ~~GL~~~R~ll~~i~~~GlPvatE~ld~~~~~y~~Dl-isw~aIGARt~esq~h-RelaSgl~~PVgfKngt~g~i~~al 192 (344)
T TIGR00034 115 NHGLRIARKLLLDLVNLGLPIAGEFLDMISPQYLADL-FSWGAIGARTTESQVH-RELASGLSCPVGFKNGTDGNLQVAI 192 (344)
T ss_pred HHHHHHHHHHHHHHHHhCCCeEEEecCcCcHHHHHHH-HhhccccCccccCHHH-HHHHhCCCCceEecCCCCCCHHHHH
Confidence 56666666665 99999999999999999999998 8999999999999855 6666 68999999999888999999
Q ss_pred HHHHH------------------HHh-cCCCCceeecccCCCCCCCCcccccCceEEeeecCCCCCCccCCCchHHHHHH
Q psy17999 124 NIYTT------------------VKQ-YHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYPTPYHDINLNVIHTLR 184 (335)
Q Consensus 124 ~Av~~------------------i~~-g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~s~YP~~~~~~nL~~i~~L~ 184 (335)
.|+.. +.. ||+ +..+|+||.+++ +| ...++..+..+.
T Consensus 193 ~Ai~aA~~~H~fl~~~~~G~~~~i~t~GN~--~~hlilRGg~~p------------------Ny----~~~di~~~~~~l 248 (344)
T TIGR00034 193 DAIRAAAAPHYFLSVTKDGQMAIVQTSGNP--DGHIILRGGKKP------------------NY----SAADVAAAKKQL 248 (344)
T ss_pred HHHHHHhCCceeeecCCCCcEEEEECCCCC--CEEEEecCCCCC------------------CC----CHHHHHHHHHHH
Confidence 87522 445 888 899999997642 22 236888888888
Q ss_pred HHCCCCC--e-ecCCCCCC-----hHHHHH-----HHHcCCc-----EEEeccCCCCCCC
Q psy17999 185 SRYPDIP--I-GYSGHENG-----VHVCYA-----AVAMGAQ-----IIEKHFTLDKSWK 226 (335)
Q Consensus 185 ~~fp~~p--V-G~SdHt~g-----~~~~~a-----AvalGA~-----vIEkH~tld~~~~ 226 (335)
++. ++| | ...+|..+ ....++ +++.|++ +||-|+...+...
T Consensus 249 ~~~-~lp~~vmVD~SH~ns~k~~~~q~~va~~v~~qi~~G~~~I~GvMiES~l~~G~Q~~ 307 (344)
T TIGR00034 249 EKA-GLPPHLMIDFSHGNSNKDHRRQPDVAEDVCEQIANGSKAIIGVMIESNLVEGNQSI 307 (344)
T ss_pred HHc-CCCCeEEEeCCCcccccchhhhHHHHHHHHHHHHcCCccceEEEEEecCCcCCCCC
Confidence 887 888 5 78999876 233444 6889986 9999999887653
No 21
>PRK12755 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional
Probab=98.93 E-value=7.9e-09 Score=101.43 Aligned_cols=141 Identities=14% Similarity=0.128 Sum_probs=114.4
Q ss_pred HHHcCCceEeccCChhhHHHHHhCCCCEEEEcCCCCCCHHHHHHHHhcCCcEEEeCCCCCCHHHHHHHHHH---------
Q psy17999 58 ADQVDIMFTASAMDQVSFDFLLSANVPFIKIGSGDSNNIPLIKYAASKQKPLIISTGMLPSIEHVDNIYTT--------- 128 (335)
Q Consensus 58 ~~~~Gi~f~stpfd~~svd~l~~l~v~~~KIaS~d~~n~~LL~~~a~~gkPvilStG~~~tl~Ei~~Av~~--------- 128 (335)
..++|+++.+++.|+...+++.++ ++...||++.+.|..+++.++.+.+||.+++|.+++++++..|+..
T Consensus 134 ~~e~Glp~atE~ld~~~~~y~~Dl-vs~~aIGARt~esq~hre~aSgl~~PVgfKngt~g~i~~al~Ai~aa~~~H~fl~ 212 (353)
T PRK12755 134 LVELGLPLATEALDPISPQYLGDL-ISWGAIGARTTESQTHREMASGLSMPVGFKNGTDGSLKVAINAIRAAAQPHRFLG 212 (353)
T ss_pred HHHhCCCEEEEecCcccHHHHHhh-hhheeeccchhcCHHHHHHhcCCCCeeEecCCCCCCHHHHHHHHHHHhCCCeeee
Confidence 899999999999999999999999 9999999999999999999999999999999999899999999732
Q ss_pred ---------HHh-cCCCCceeecccCCCCCCCCcccccCceEEeeecCCCCCCc-cCCCchHHHHHHHHCCCCCe-ecCC
Q psy17999 129 ---------VKQ-YHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYPTPY-HDINLNVIHTLRSRYPDIPI-GYSG 196 (335)
Q Consensus 129 ---------i~~-g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~s~YP~~~-~~~nL~~i~~L~~~fp~~pV-G~Sd 196 (335)
+.. ||+ +..+|.||.+ .||.-. ++++.......+...| .+| ...+
T Consensus 213 ~~~~G~~~iv~t~GN~--~~hliLRGg~--------------------~~pNy~~~~i~~a~~~l~k~~l~-~~vmVD~S 269 (353)
T PRK12755 213 INQEGQVALLETRGNP--DGHVILRGGK--------------------KGPNYDAASVAACEAQLEKAGLR-PRLMIDCS 269 (353)
T ss_pred eCCCCcEEEEECCCCC--CEEEEeCCCC--------------------CCCCCCHHHHHHHHHHHHHcCCC-CcEEecCC
Confidence 344 677 7778888865 345433 7788877776666563 555 7889
Q ss_pred CCCC----------hHHHHHHHHcCCc-----EEEeccCCC
Q psy17999 197 HENG----------VHVCYAAVAMGAQ-----IIEKHFTLD 222 (335)
Q Consensus 197 Ht~g----------~~~~~aAvalGA~-----vIEkH~tld 222 (335)
|..+ .....+.++.|+. +||-|+.--
T Consensus 270 H~Ns~K~~~~Q~~V~~~v~~qi~~G~~~I~GvMiES~l~~G 310 (353)
T PRK12755 270 HANSGKDYRRQPAVAEDVVAQIAAGNRSIIGVMIESHLEEG 310 (353)
T ss_pred ccccccchhhhHHHHHHHHHHHHcCCCceEEEEEEEecccc
Confidence 9765 2234677888983 999997543
No 22
>TIGR03170 flgA_cterm flagella basal body P-ring formation protein FlgA. This model describes a conserved C-terminal region of the flagellar basal body P-ring formation protein FlgA. This sequence region contains a SAF domain, now described by Pfam model pfam08666.
Probab=98.41 E-value=1.1e-07 Score=79.84 Aligned_cols=58 Identities=17% Similarity=0.321 Sum_probs=52.7
Q ss_pred EEEeecCCCCcccccCCcEEeeCCCCCCCcchH---HHHhcchhhcccCCCCcccCCCCCC
Q psy17999 275 IVSSCDIQAGTVLQEFHVCIKVAEPKGICGTRY---ASVMGRKVNRDIRRDESIQDIDLDP 332 (335)
Q Consensus 275 l~a~~di~~G~~l~~~dl~~kr~~~~Gi~p~~~---~~viG~~~~~di~~~~~i~~~~l~~ 332 (335)
++++++|++|++|+++|+.++|++-.++++..+ ++++|+.++|+|.+|++|++++|..
T Consensus 2 ~Va~r~I~~G~~i~~~dl~~~~~~~~~l~~~~~~~~~~viG~~a~r~i~~G~~i~~~~l~~ 62 (122)
T TIGR03170 2 VVAKRPLKRGEVISPEDLKLERGDLARLPGGVLTDPDEVVGKVAKRPLRAGQPLTANMLRP 62 (122)
T ss_pred EEECcccCCCCCcCHHHcEEEEechhhCCccccCCHHHhcChheecccCCCCeeChHhcCC
Confidence 689999999999999999999875468888887 8999999999999999999999864
No 23
>smart00858 SAF This domain family includes a range of different proteins. Such as antifreeze proteins and flagellar FlgA proteins, and CpaB pilus proteins.
Probab=98.23 E-value=4.7e-07 Score=66.79 Aligned_cols=57 Identities=28% Similarity=0.430 Sum_probs=46.8
Q ss_pred eEEEEeecCCCCcccccCCcEEee---C--CC-CCCCcchHHHHhcchhhcccCCCCcccCCCCC
Q psy17999 273 KCIVSSCDIQAGTVLQEFHVCIKV---A--EP-KGICGTRYASVMGRKVNRDIRRDESIQDIDLD 331 (335)
Q Consensus 273 rsl~a~~di~~G~~l~~~dl~~kr---~--~~-~Gi~p~~~~~viG~~~~~di~~~~~i~~~~l~ 331 (335)
+.++++++|++|++|+.+|+.++. . +. .++.+.+ .++|++++++|.+|++|++++|.
T Consensus 2 ~v~va~~~i~~G~~i~~~dl~~~~~~~~~~~~~~~~~~~~--~~~G~~~~~~i~~G~~l~~~~l~ 64 (64)
T smart00858 2 RVVVAARDLPAGEVITAEDVRLGHVALRDLPGGGGLTPYG--QVIGKVARRDIAAGEPITASDLE 64 (64)
T ss_pred CEEEEeCccCCCCCcchhhcccceeEccccCCCCeeeccc--cceeHhhhccCCCCCEeeHHhCC
Confidence 578999999999999999999863 1 22 3454444 49999999999999999998873
No 24
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=97.75 E-value=0.0002 Score=70.73 Aligned_cols=105 Identities=12% Similarity=0.041 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHcCCceEec--cCCh---------------h----hHHHHH--hCCCCEEEEcCCCCC-----------
Q psy17999 49 EEYVMLQQCADQVDIMFTAS--AMDQ---------------V----SFDFLL--SANVPFIKIGSGDSN----------- 94 (335)
Q Consensus 49 e~~~~L~~~~~~~Gi~f~st--pfd~---------------~----svd~l~--~l~v~~~KIaS~d~~----------- 94 (335)
+++.++.+.|++.||+|+.. +++. + ++..+. ++|+|++|+...---
T Consensus 143 ~~l~rv~~ec~~~giPlllE~l~y~~~~~~~~~~~~a~~~p~~V~~a~r~~~~~elGaDvlKve~p~~~~~veg~~~~~~ 222 (340)
T PRK12858 143 AFVERVGAECRANDIPFFLEPLTYDGKGSDKKAEEFAKVKPEKVIKTMEEFSKPRYGVDVLKVEVPVDMKFVEGFDGFEE 222 (340)
T ss_pred HHHHHHHHHHHHcCCceEEEEeccCCCccccccccccccCHHHHHHHHHHHhhhccCCeEEEeeCCCCcccccccccccc
Confidence 67899999999999999997 3432 1 133444 599999999765221
Q ss_pred ---CH---HHHHH-HHhcCCcEEEeCCCCCCHHHHHHHHHHHHh-cC--CCCceeecccCCCCCCCCcccccCceEEeee
Q psy17999 95 ---NI---PLIKY-AASKQKPLIISTGMLPSIEHVDNIYTTVKQ-YH--SNLSILHCVSAYPTPYPTVKQYHSNLSILHC 164 (335)
Q Consensus 95 ---n~---~LL~~-~a~~gkPvilStG~~~tl~Ei~~Av~~i~~-g~--~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC 164 (335)
.- ..+++ +..++.|+|+-.|.. +.+++.+.++.... |. . |+..| +=+.-||
T Consensus 223 ~~~~~~~~~~f~~~~~a~~~P~vvlsgG~-~~~~f~~~l~~A~~aGa~f~---------Gvl~G---------Rniwq~~ 283 (340)
T PRK12858 223 AYTQEEAFKLFREQSDATDLPFIFLSAGV-SPELFRRTLEFACEAGADFS---------GVLCG---------RATWQDG 283 (340)
T ss_pred cccHHHHHHHHHHHHhhCCCCEEEECCCC-CHHHHHHHHHHHHHcCCCcc---------chhhh---------HHHHhhh
Confidence 11 33444 444799999977777 78888888886665 54 3 55544 5667789
Q ss_pred cCCCCCCc
Q psy17999 165 VSAYPTPY 172 (335)
Q Consensus 165 ~s~YP~~~ 172 (335)
+..|-.+.
T Consensus 284 v~~~~~~~ 291 (340)
T PRK12858 284 IEPYAAEG 291 (340)
T ss_pred hccccCCC
Confidence 99986665
No 25
>PRK12618 flgA flagellar basal body P-ring biosynthesis protein FlgA; Reviewed
Probab=97.33 E-value=0.00011 Score=63.90 Aligned_cols=61 Identities=23% Similarity=0.339 Sum_probs=52.2
Q ss_pred cceEEEEeecCCCCcccccCCcEEeeCCCCCCCcchHHHHhcchhhcccCCCCcccCCCCCC
Q psy17999 271 LGKCIVSSCDIQAGTVLQEFHVCIKVAEPKGICGTRYASVMGRKVNRDIRRDESIQDIDLDP 332 (335)
Q Consensus 271 ~rrsl~a~~di~~G~~l~~~dl~~kr~~~~Gi~p~~~~~viG~~~~~di~~~~~i~~~~l~~ 332 (335)
+..-++++++|.+|++|+++||.+.+....|+- .+.++++|+.++|.+.+|++|+.++++.
T Consensus 18 ~~~VvVA~r~L~rGevIt~~DL~~~~~~~~g~~-td~~~vvG~~~rR~l~aGq~i~~~~L~~ 78 (141)
T PRK12618 18 AAETVVAARTIRALTVIGAEDLALKPGDTPGAL-TDPAQAIGQEARVTLYAGRPIRAADLGP 78 (141)
T ss_pred eeEEEEEccCcCCCCCcCHHHeEEEeecccccc-CCHHHhCCcEEEeecCCCCeeCHHHcCC
Confidence 556799999999999999999999865444533 5789999999999999999999888863
No 26
>PRK06005 flgA flagellar basal body P-ring biosynthesis protein FlgA; Reviewed
Probab=97.16 E-value=0.0002 Score=63.54 Aligned_cols=61 Identities=15% Similarity=0.110 Sum_probs=48.9
Q ss_pred ceEEEEeecCCCCcccccCCcEEee-CCCCCCC---cchHHHHhcchhhcccCCCCcccCCCCCC
Q psy17999 272 GKCIVSSCDIQAGTVLQEFHVCIKV-AEPKGIC---GTRYASVMGRKVNRDIRRDESIQDIDLDP 332 (335)
Q Consensus 272 rrsl~a~~di~~G~~l~~~dl~~kr-~~~~Gi~---p~~~~~viG~~~~~di~~~~~i~~~~l~~ 332 (335)
.+-++++++|.+||+|+++||...+ -+...++ ..+.++++|+.++|.+.+|++|+.++|+.
T Consensus 33 v~vvVa~r~I~rGevIt~~DL~~~~~~~~~~l~~~~itd~~~viG~~arR~l~aGqpI~~~~L~~ 97 (160)
T PRK06005 33 IAFVVPSTTIYPGETISDSMLLEVQFVTNPPAAAQYVLSIDQVVGKVAKRTLLPGRPIPVSALRE 97 (160)
T ss_pred EEEEEEccCcCCCCCcCHHHeeeeeeecccccCccccCCHHHhcCceEEeecCCCCeeCHHHcCC
Confidence 3678999999999999999997654 2222222 35778899999999999999999888863
No 27
>PF13144 SAF_2: SAF-like
Probab=97.13 E-value=0.00019 Score=64.88 Aligned_cols=63 Identities=22% Similarity=0.369 Sum_probs=50.4
Q ss_pred ccceEEEEeecCCCCcccccCCcEEeeCCCCCCCcchH-HHHhcchhhcccCCCCcccCCCCCC
Q psy17999 270 KLGKCIVSSCDIQAGTVLQEFHVCIKVAEPKGICGTRY-ASVMGRKVNRDIRRDESIQDIDLDP 332 (335)
Q Consensus 270 ~~rrsl~a~~di~~G~~l~~~dl~~kr~~~~Gi~p~~~-~~viG~~~~~di~~~~~i~~~~l~~ 332 (335)
...+-++|+++|++|++|+++|+.+.+-+-..++...+ ++++|+.++|+|.+|++|+.++|..
T Consensus 73 ~~~~v~va~~~i~~G~~i~~~dv~~~~~~~~~~~~~~~~~~~~G~~a~r~i~~G~~i~~~~l~~ 136 (196)
T PF13144_consen 73 AYVEVVVAKRPIKRGEVITADDVELERVPLSRLPGDYLTDQLIGKVAKRNIRAGQPITPSDLEP 136 (196)
T ss_pred EEEEEEEEeeecCCCCccCHHHeEEEEEEhhhCCccccchhhCCeEEEEEcCCCCEeeeccccc
Confidence 35678899999999999999999998655222221111 7899999999999999999999863
No 28
>PRK07018 flgA flagellar basal body P-ring biosynthesis protein FlgA; Reviewed
Probab=97.10 E-value=0.00025 Score=66.40 Aligned_cols=63 Identities=17% Similarity=0.177 Sum_probs=51.2
Q ss_pred ccceEEEEeecCCCCcccccCCcEEeeCCCCCCC---cchHHHHhcchhhcccCCCCcccCCCCCC
Q psy17999 270 KLGKCIVSSCDIQAGTVLQEFHVCIKVAEPKGIC---GTRYASVMGRKVNRDIRRDESIQDIDLDP 332 (335)
Q Consensus 270 ~~rrsl~a~~di~~G~~l~~~dl~~kr~~~~Gi~---p~~~~~viG~~~~~di~~~~~i~~~~l~~ 332 (335)
....-++|+++|++|++|+++||.+++-+-..++ ..+.++++|++++|+|.+|++|+.++|..
T Consensus 108 ~~~~VvVA~r~I~rG~~I~~~Dl~~~~~~~~~l~~~~~~~~~~vvG~~~~R~I~aG~~I~~~~L~~ 173 (235)
T PRK07018 108 VTGPYVVAARPLARGEKLSASDVTLREGDLDTLPPGVFTDPDQLVGAVSKRRIAPGQPIRLNMLRQ 173 (235)
T ss_pred EEEEEEEEccccCCCCCcCHHHeEEEEEchhcCCccccCCHHHhCCceEEeecCCCCccCHHHccC
Confidence 3456789999999999999999999874322232 34567899999999999999999988863
No 29
>COG1261 FlgA Flagellar basal body P-ring biosynthesis protein [Cell motility and secretion / Posttranslational modification, protein turnover, chaperones]
Probab=97.04 E-value=0.00047 Score=64.29 Aligned_cols=60 Identities=18% Similarity=0.235 Sum_probs=53.2
Q ss_pred ceEEEEeecCCCCcccccCCcEEeeCCCCCCCcc---hHHHHhcchhhcccCCCCcccCCCCC
Q psy17999 272 GKCIVSSCDIQAGTVLQEFHVCIKVAEPKGICGT---RYASVMGRKVNRDIRRDESIQDIDLD 331 (335)
Q Consensus 272 rrsl~a~~di~~G~~l~~~dl~~kr~~~~Gi~p~---~~~~viG~~~~~di~~~~~i~~~~l~ 331 (335)
+.-++++|.|++|++|+.+|++.++-.-..+++. +.++++|+.++|++.+|++|..+++.
T Consensus 95 ~~~~va~r~I~~Ge~i~a~dv~~~~~~~~~l~~~~~~d~~~vvg~vskr~l~pg~~i~~~~lr 157 (220)
T COG1261 95 GEVVVAARTIYRGEKISAADVKLKRGDLDALPPGYVLDPDEVVGKVSKRTLLPGQPILASMLR 157 (220)
T ss_pred ceEEEEecccCCCCccChhHheeeeeccccCCCcccCCHHHHhcHHhhhccCCCCEecHHHhc
Confidence 3678999999999999999999987544568884 89999999999999999999988775
No 30
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=96.94 E-value=0.059 Score=48.54 Aligned_cols=128 Identities=14% Similarity=0.200 Sum_probs=89.7
Q ss_pred CHHHHHHHHHHHHHcC-CceEe-ccCChhhHHHHHhCCCCEEEEcCCCCCCHHHHHHHHhcCCcEEEeCCCCCCHHHHHH
Q psy17999 47 SQEEYVMLQQCADQVD-IMFTA-SAMDQVSFDFLLSANVPFIKIGSGDSNNIPLIKYAASKQKPLIISTGMLPSIEHVDN 124 (335)
Q Consensus 47 ~~e~~~~L~~~~~~~G-i~f~s-tpfd~~svd~l~~l~v~~~KIaS~d~~n~~LL~~~a~~gkPvilStG~~~tl~Ei~~ 124 (335)
+..+...+...++.++ +.+-. ++.+.+.++.+.++|.+++-.+. .+.+++++.-+.+.|+++ |.+ |++|+..
T Consensus 39 ~~~~~~~i~~l~~~~~~~~iGag~v~~~~~~~~a~~~Ga~~i~~p~---~~~~~~~~~~~~~~~~i~--gv~-t~~e~~~ 112 (190)
T cd00452 39 TPGALEAIRALRKEFPEALIGAGTVLTPEQADAAIAAGAQFIVSPG---LDPEVVKAANRAGIPLLP--GVA-TPTEIMQ 112 (190)
T ss_pred ChhHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEEEcCC---CCHHHHHHHHHcCCcEEC--CcC-CHHHHHH
Confidence 3345556777777775 44333 77889999999999999996554 457899998888999886 888 9999998
Q ss_pred HHHHHHhcCCCCceeecccCCCCCCCCcccccCceEEeeecCCCCCCccCCCchHHHHHHHHCCCCCeecCCCCCChHHH
Q psy17999 125 IYTTVKQYHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYPTPYHDINLNVIHTLRSRYPDIPIGYSGHENGVHVC 204 (335)
Q Consensus 125 Av~~i~~g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~s~YP~~~~~~nL~~i~~L~~~fp~~pVG~SdHt~g~~~~ 204 (335)
|.+. |. +++-+ ||++.. ....+..+++.+|++|+.=++-- ...-.
T Consensus 113 A~~~---Ga------------------------d~i~~-----~p~~~~--g~~~~~~l~~~~~~~p~~a~GGI-~~~n~ 157 (190)
T cd00452 113 ALEL---GA------------------------DIVKL-----FPAEAV--GPAYIKALKGPFPQVRFMPTGGV-SLDNA 157 (190)
T ss_pred HHHC---CC------------------------CEEEE-----cCCccc--CHHHHHHHHhhCCCCeEEEeCCC-CHHHH
Confidence 8652 33 33332 676653 67788899988888888555433 23333
Q ss_pred HHHHHcCCcEE
Q psy17999 205 YAAVAMGAQII 215 (335)
Q Consensus 205 ~aAvalGA~vI 215 (335)
......||+.|
T Consensus 158 ~~~~~~G~~~v 168 (190)
T cd00452 158 AEWLAAGVVAV 168 (190)
T ss_pred HHHHHCCCEEE
Confidence 44556677743
No 31
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=96.93 E-value=0.03 Score=51.38 Aligned_cols=138 Identities=14% Similarity=0.161 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHcCCceEe--ccCChhhHHHHHhCCCCEEEEcCCCCCCHHHHHHHHhc-CC-cEEEeCC----------C
Q psy17999 50 EYVMLQQCADQVDIMFTA--SAMDQVSFDFLLSANVPFIKIGSGDSNNIPLIKYAASK-QK-PLIISTG----------M 115 (335)
Q Consensus 50 ~~~~L~~~~~~~Gi~f~s--tpfd~~svd~l~~l~v~~~KIaS~d~~n~~LL~~~a~~-gk-PvilStG----------~ 115 (335)
.+..+.+.++..+++++. -+.+.+.++.+.+.|++.+-|++.-+.|..+++++++. ++ +|++|.. .
T Consensus 61 ~~~~i~~i~~~~~~pv~~~GgI~~~e~~~~~~~~Gad~vvigs~~l~dp~~~~~i~~~~g~~~i~~sid~~~~~~~~~~~ 140 (234)
T cd04732 61 NLELIEEIVKAVGIPVQVGGGIRSLEDIERLLDLGVSRVIIGTAAVKNPELVKELLKEYGGERIVVGLDAKDGKVATKGW 140 (234)
T ss_pred CHHHHHHHHHhcCCCEEEeCCcCCHHHHHHHHHcCCCEEEECchHHhChHHHHHHHHHcCCceEEEEEEeeCCEEEECCC
Confidence 455666677776777776 66899999998899999999999999999999998875 55 7888732 0
Q ss_pred C-CCHHHHHHHHHHHHh-cCCCCceeecccCCCCCCCCcccccCceEEeeecCCCCCCccCCCchHHHHHHHHCCCCCee
Q psy17999 116 L-PSIEHVDNIYTTVKQ-YHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYPTPYHDINLNVIHTLRSRYPDIPIG 193 (335)
Q Consensus 116 ~-~tl~Ei~~Av~~i~~-g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~s~YP~~~~~~nL~~i~~L~~~fp~~pVG 193 (335)
. .+..+..+.++.+.+ |.. .+++++....-. ....|+..|..+++.. ++||-
T Consensus 141 ~~~~~~~~~~~~~~~~~~ga~-----------------------~iii~~~~~~g~--~~g~~~~~i~~i~~~~-~ipvi 194 (234)
T cd04732 141 LETSEVSLEELAKRFEELGVK-----------------------AIIYTDISRDGT--LSGPNFELYKELAAAT-GIPVI 194 (234)
T ss_pred eeecCCCHHHHHHHHHHcCCC-----------------------EEEEEeecCCCc--cCCCCHHHHHHHHHhc-CCCEE
Confidence 0 011122223333433 322 444443322211 1337899999999988 89998
Q ss_pred cCCCCCChHHHHHHHHcCCc
Q psy17999 194 YSGHENGVHVCYAAVAMGAQ 213 (335)
Q Consensus 194 ~SdHt~g~~~~~aAvalGA~ 213 (335)
.++.-....-...+...||+
T Consensus 195 ~~GGi~~~~di~~~~~~Ga~ 214 (234)
T cd04732 195 ASGGVSSLDDIKALKELGVA 214 (234)
T ss_pred EecCCCCHHHHHHHHHCCCC
Confidence 88766665545556667987
No 32
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=96.84 E-value=0.016 Score=55.05 Aligned_cols=81 Identities=12% Similarity=0.160 Sum_probs=67.5
Q ss_pred CCHHHHHHHHHHHHHcCCceEeccCChhhHHHHHhCCCCEEEEcCCCCCCH----HHHHHHHh---cCCcEEEeCCCCCC
Q psy17999 46 FSQEEYVMLQQCADQVDIMFTASAMDQVSFDFLLSANVPFIKIGSGDSNNI----PLIKYAAS---KQKPLIISTGMLPS 118 (335)
Q Consensus 46 l~~e~~~~L~~~~~~~Gi~f~stpfd~~svd~l~~l~v~~~KIaS~d~~n~----~LL~~~a~---~gkPvilStG~~~t 118 (335)
|+.+++.+|.++|+++|+..+.++.+++.++...+.|.+++=|-.+|+..+ ..-..++. .+..+|-..|.. |
T Consensus 135 L~~~~l~~l~~~a~~lGle~LVEVh~~~El~~a~~~ga~iiGINnRdL~t~~vd~~~~~~L~~~ip~~~~~IsESGI~-t 213 (247)
T PRK13957 135 LTPSQIKSFLKHASSLGMDVLVEVHTEDEAKLALDCGAEIIGINTRDLDTFQIHQNLVEEVAAFLPPNIVKVGESGIE-S 213 (247)
T ss_pred CCHHHHHHHHHHHHHcCCceEEEECCHHHHHHHHhCCCCEEEEeCCCCccceECHHHHHHHHhhCCCCcEEEEcCCCC-C
Confidence 788999999999999999999999999999999999999999999998765 33344443 244555569999 9
Q ss_pred HHHHHHHHH
Q psy17999 119 IEHVDNIYT 127 (335)
Q Consensus 119 l~Ei~~Av~ 127 (335)
.+++....+
T Consensus 214 ~~d~~~l~~ 222 (247)
T PRK13957 214 RSDLDKFRK 222 (247)
T ss_pred HHHHHHHHH
Confidence 999988654
No 33
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=96.73 E-value=0.023 Score=54.08 Aligned_cols=81 Identities=14% Similarity=0.254 Sum_probs=68.4
Q ss_pred CCHHHHHHHHHHHHHcCCceEeccCChhhHHHHHhCCCCEEEEcCCCCC----CHHHHHHHHhc---CCcEEEeCCCCCC
Q psy17999 46 FSQEEYVMLQQCADQVDIMFTASAMDQVSFDFLLSANVPFIKIGSGDSN----NIPLIKYAASK---QKPLIISTGMLPS 118 (335)
Q Consensus 46 l~~e~~~~L~~~~~~~Gi~f~stpfd~~svd~l~~l~v~~~KIaS~d~~----n~~LL~~~a~~---gkPvilStG~~~t 118 (335)
|+.+++.+|.++|+++|+..+.++.+.+.++.+.++|++++=+.++|+. ++.+..++.+. +.|+|--.|.. |
T Consensus 144 l~~~~l~~li~~a~~lGl~~lvevh~~~E~~~A~~~gadiIgin~rdl~~~~~d~~~~~~l~~~~p~~~~vIaegGI~-t 222 (260)
T PRK00278 144 LDDEQLKELLDYAHSLGLDVLVEVHDEEELERALKLGAPLIGINNRNLKTFEVDLETTERLAPLIPSDRLVVSESGIF-T 222 (260)
T ss_pred CCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHhCCCCCEEEEEeCCC-C
Confidence 5678999999999999999999999999999999999999999886653 45566776664 34788888999 9
Q ss_pred HHHHHHHHH
Q psy17999 119 IEHVDNIYT 127 (335)
Q Consensus 119 l~Ei~~Av~ 127 (335)
.+++..+.+
T Consensus 223 ~ed~~~~~~ 231 (260)
T PRK00278 223 PEDLKRLAK 231 (260)
T ss_pred HHHHHHHHH
Confidence 999998765
No 34
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=96.70 E-value=0.02 Score=52.95 Aligned_cols=83 Identities=13% Similarity=0.064 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHcCCceEeccCC----------hhhHHH----HHhCCCCEEEEcCCCCCCHHHHHHHHh-cCCcEEEeC
Q psy17999 49 EEYVMLQQCADQVDIMFTASAMD----------QVSFDF----LLSANVPFIKIGSGDSNNIPLIKYAAS-KQKPLIIST 113 (335)
Q Consensus 49 e~~~~L~~~~~~~Gi~f~stpfd----------~~svd~----l~~l~v~~~KIaS~d~~n~~LL~~~a~-~gkPvilSt 113 (335)
++..++.+.|+++|++++...+. .+.+.. ..++|+|++|+.- ..+...++++.+ .+.||+++=
T Consensus 109 ~~i~~v~~~~~~~g~~~iie~~~~g~~~~~~~~~~~i~~~~~~a~~~GaD~Ik~~~--~~~~~~~~~i~~~~~~pvv~~G 186 (235)
T cd00958 109 EELARVAAEAHKYGLPLIAWMYPRGPAVKNEKDPDLIAYAARIGAELGADIVKTKY--TGDAESFKEVVEGCPVPVVIAG 186 (235)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeccCCcccCccCHHHHHHHHHHHHHHCCCEEEecC--CCCHHHHHHHHhcCCCCEEEeC
Confidence 67889999999999999997754 344443 6678999999952 347889998875 578998886
Q ss_pred CCC-CCHHHHHHHHHHHHh-cC
Q psy17999 114 GML-PSIEHVDNIYTTVKQ-YH 133 (335)
Q Consensus 114 G~~-~tl~Ei~~Av~~i~~-g~ 133 (335)
|.. .|.++..+-+..+.. |-
T Consensus 187 G~~~~~~~~~l~~~~~~~~~Ga 208 (235)
T cd00958 187 GPKKDSEEEFLKMVYDAMEAGA 208 (235)
T ss_pred CCCCCCHHHHHHHHHHHHHcCC
Confidence 632 267665444444443 43
No 35
>PRK12617 flgA flagellar basal body P-ring biosynthesis protein FlgA; Reviewed
Probab=96.64 E-value=0.0012 Score=61.38 Aligned_cols=63 Identities=16% Similarity=0.192 Sum_probs=52.0
Q ss_pred ccceEEEEeecCCCCcccccCCcEEeeCCCCCCC---cchHHHHhcchhhcccCCCCcccCCCCCC
Q psy17999 270 KLGKCIVSSCDIQAGTVLQEFHVCIKVAEPKGIC---GTRYASVMGRKVNRDIRRDESIQDIDLDP 332 (335)
Q Consensus 270 ~~rrsl~a~~di~~G~~l~~~dl~~kr~~~~Gi~---p~~~~~viG~~~~~di~~~~~i~~~~l~~ 332 (335)
....-++++++|.+|++|+.+||.+.+.+-..++ -.+.++++|++++|.+.+|++|+.++|..
T Consensus 87 ~~~~vvVa~r~l~rG~~I~~~Dl~~~~~~~~~l~~~~~td~~~~vG~~~~r~l~aGq~i~~~~L~~ 152 (214)
T PRK12617 87 RNQDVLVLRRGITAGETISLADISIEKRDAARIVGAVLADPVAAVGKTARRILPAGSLLSANDLVS 152 (214)
T ss_pred EEEEEEEEeeecCCCCCcCHHHcEEEeechhhcCcccccCHHHhccceeeeecCCCCeeCHHHcCC
Confidence 3556789999999999999999999865433333 34678999999999999999999888863
No 36
>PRK08227 autoinducer 2 aldolase; Validated
Probab=96.61 E-value=0.025 Score=54.23 Aligned_cols=81 Identities=12% Similarity=0.082 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHcCCceEeccCChhh-------------HHHHHhCCCCEEEEcCCCCCCHHHHHHHHhcCCcEEEeCCC
Q psy17999 49 EEYVMLQQCADQVDIMFTASAMDQVS-------------FDFLLSANVPFIKIGSGDSNNIPLIKYAASKQKPLIISTGM 115 (335)
Q Consensus 49 e~~~~L~~~~~~~Gi~f~stpfd~~s-------------vd~l~~l~v~~~KIaS~d~~n~~LL~~~a~~gkPvilStG~ 115 (335)
+++.++.+.|+++|++.+. ++ +.. +....++|.|++|+.-.. -.|=+-++....||++.=|.
T Consensus 127 ~~l~~v~~ea~~~G~Plla-~~-prG~~~~~~~~~ia~aaRiaaELGADiVK~~y~~---~~f~~vv~a~~vPVviaGG~ 201 (264)
T PRK08227 127 KNIIQLVDAGLRYGMPVMA-VT-AVGKDMVRDARYFSLATRIAAEMGAQIIKTYYVE---EGFERITAGCPVPIVIAGGK 201 (264)
T ss_pred HHHHHHHHHHHHhCCcEEE-Ee-cCCCCcCchHHHHHHHHHHHHHHcCCEEecCCCH---HHHHHHHHcCCCcEEEeCCC
Confidence 6789999999999999998 32 211 345668999999998864 33445555668999999886
Q ss_pred CCCHHHHHHHHH-HHHhcCC
Q psy17999 116 LPSIEHVDNIYT-TVKQYHS 134 (335)
Q Consensus 116 ~~tl~Ei~~Av~-~i~~g~~ 134 (335)
..+.+|+.+-++ .+..|..
T Consensus 202 k~~~~~~L~~v~~ai~aGa~ 221 (264)
T PRK08227 202 KLPERDALEMCYQAIDEGAS 221 (264)
T ss_pred CCCHHHHHHHHHHHHHcCCc
Confidence 645555555444 3443543
No 37
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=96.60 E-value=0.087 Score=51.32 Aligned_cols=133 Identities=14% Similarity=0.132 Sum_probs=90.9
Q ss_pred CCHHHHHHHHHHHHH-----cCCceEe-ccCChhhHHHHHhCCCCEEEEcCCCCCCHHHHHHHHhcCCcEEEeCCCCCCH
Q psy17999 46 FSQEEYVMLQQCADQ-----VDIMFTA-SAMDQVSFDFLLSANVPFIKIGSGDSNNIPLIKYAASKQKPLIISTGMLPSI 119 (335)
Q Consensus 46 l~~e~~~~L~~~~~~-----~Gi~f~s-tpfd~~svd~l~~l~v~~~KIaS~d~~n~~LL~~~a~~gkPvilStG~~~tl 119 (335)
++.++++.-.+.+++ .|+.++. +|+..+.++.+.+.+++++-++.+.. .++++++-..|.+|+...+ +.
T Consensus 45 ~~~~~l~~~i~~~~~~t~~pfgvn~~~~~~~~~~~~~~~~~~~v~~v~~~~g~p--~~~i~~lk~~g~~v~~~v~---s~ 119 (307)
T TIGR03151 45 APPDVVRKEIRKVKELTDKPFGVNIMLLSPFVDELVDLVIEEKVPVVTTGAGNP--GKYIPRLKENGVKVIPVVA---SV 119 (307)
T ss_pred CCHHHHHHHHHHHHHhcCCCcEEeeecCCCCHHHHHHHHHhCCCCEEEEcCCCc--HHHHHHHHHcCCEEEEEcC---CH
Confidence 466666555555554 3555554 67777888988899999998865432 4689999999999887654 77
Q ss_pred HHHHHHHHHHHhcCCCCceeecccCCCCCCCCcccccCceEEeeec--CCCCCCccCCCchHHHHHHHHCCCCCeecCCC
Q psy17999 120 EHVDNIYTTVKQYHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCV--SAYPTPYHDINLNVIHTLRSRYPDIPIGYSGH 197 (335)
Q Consensus 120 ~Ei~~Av~~i~~g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~--s~YP~~~~~~nL~~i~~L~~~fp~~pVG~SdH 197 (335)
++...+.+. | . +.+++|+. ..|.. ...++..++.+++.. ++||.-++.
T Consensus 120 ~~a~~a~~~---G-a-----------------------D~Ivv~g~eagGh~g--~~~~~~ll~~v~~~~-~iPviaaGG 169 (307)
T TIGR03151 120 ALAKRMEKA---G-A-----------------------DAVIAEGMESGGHIG--ELTTMALVPQVVDAV-SIPVIAAGG 169 (307)
T ss_pred HHHHHHHHc---C-C-----------------------CEEEEECcccCCCCC--CCcHHHHHHHHHHHh-CCCEEEECC
Confidence 776665442 3 2 45555543 12211 123678889999988 899977776
Q ss_pred CCChHHHHHHHHcCCc
Q psy17999 198 ENGVHVCYAAVAMGAQ 213 (335)
Q Consensus 198 t~g~~~~~aAvalGA~ 213 (335)
-.......+|.++||+
T Consensus 170 I~~~~~~~~al~~GA~ 185 (307)
T TIGR03151 170 IADGRGMAAAFALGAE 185 (307)
T ss_pred CCCHHHHHHHHHcCCC
Confidence 6666667778889998
No 38
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=96.58 E-value=0.047 Score=51.52 Aligned_cols=145 Identities=14% Similarity=0.198 Sum_probs=92.4
Q ss_pred CHHHHHHHHHHHH-HcCCceEecc-CChhhHHHHHhCCCCEEEEcC--CCCCC---------------HHHHHHHHhcCC
Q psy17999 47 SQEEYVMLQQCAD-QVDIMFTASA-MDQVSFDFLLSANVPFIKIGS--GDSNN---------------IPLIKYAASKQK 107 (335)
Q Consensus 47 ~~e~~~~L~~~~~-~~Gi~f~stp-fd~~svd~l~~l~v~~~KIaS--~d~~n---------------~~LL~~~a~~gk 107 (335)
+..++..+.+..+ ..+..+.+-. .+.+.++.+.+.|++.+.+.- .+..+ ..+++++-+.|.
T Consensus 45 ~~~~~e~~~~l~~~~~~~~~~~~~r~~~~~v~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~ 124 (259)
T cd07939 45 GEEEREAIRAIVALGLPARLIVWCRAVKEDIEAALRCGVTAVHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGL 124 (259)
T ss_pred CHHHHHHHHHHHhcCCCCEEEEeccCCHHHHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCC
Confidence 4455555555544 3455555444 678888888888899877753 22211 134555555687
Q ss_pred cEEEeC---CCCCCHHHHHHHHHHHHh-cCCCCceeeccc-CCCCCCCCcccccCceEEeeecCCCCCCccCCCchHHHH
Q psy17999 108 PLIIST---GMLPSIEHVDNIYTTVKQ-YHSNLSILHCVS-AYPTPYPTVKQYHSNLSILHCVSAYPTPYHDINLNVIHT 182 (335)
Q Consensus 108 PvilSt---G~~~tl~Ei~~Av~~i~~-g~~~~~~~~c~~-g~~~~~~~~~~~~~~l~llHC~s~YP~~~~~~nL~~i~~ 182 (335)
.|.++. +.. +++++.+.++.+.. |-. .|-+|++ |+. +| .+-.+ .+..
T Consensus 125 ~v~~~~~~~~~~-~~~~~~~~~~~~~~~G~~--~i~l~DT~G~~---------------------~P--~~v~~--lv~~ 176 (259)
T cd07939 125 FVSVGAEDASRA-DPDFLIEFAEVAQEAGAD--RLRFADTVGIL---------------------DP--FTTYE--LIRR 176 (259)
T ss_pred eEEEeeccCCCC-CHHHHHHHHHHHHHCCCC--EEEeCCCCCCC---------------------CH--HHHHH--HHHH
Confidence 776653 344 78888888888776 654 5666664 222 22 22222 3678
Q ss_pred HHHHCCCCCeecCCCCC-C--hHHHHHHHHcCCcEEEeccCCC
Q psy17999 183 LRSRYPDIPIGYSGHEN-G--VHVCYAAVAMGAQIIEKHFTLD 222 (335)
Q Consensus 183 L~~~fp~~pVG~SdHt~-g--~~~~~aAvalGA~vIEkH~tld 222 (335)
+++.+| +++||-.|.. | ..-+++|+..||++|+ -|+.
T Consensus 177 l~~~~~-~~l~~H~Hn~~Gla~An~laAi~aG~~~vd--~s~~ 216 (259)
T cd07939 177 LRAATD-LPLEFHAHNDLGLATANTLAAVRAGATHVS--VTVN 216 (259)
T ss_pred HHHhcC-CeEEEEecCCCChHHHHHHHHHHhCCCEEE--Eecc
Confidence 889995 9999987753 4 6667899999999987 4554
No 39
>PRK06804 flgA flagellar basal body P-ring biosynthesis protein FlgA; Reviewed
Probab=96.56 E-value=0.0011 Score=63.30 Aligned_cols=62 Identities=19% Similarity=0.272 Sum_probs=50.9
Q ss_pred cceEEEEeecCCCCcccccCCcEEeeCCCCCCCc---chHHHHhcchhhcccCCCCcccCCCCCC
Q psy17999 271 LGKCIVSSCDIQAGTVLQEFHVCIKVAEPKGICG---TRYASVMGRKVNRDIRRDESIQDIDLDP 332 (335)
Q Consensus 271 ~rrsl~a~~di~~G~~l~~~dl~~kr~~~~Gi~p---~~~~~viG~~~~~di~~~~~i~~~~l~~ 332 (335)
...-++|+++|.+|++|+.+||...+..-..++. .+.++++|++++|.|.+|++|+.++|+.
T Consensus 135 ~~~VvVA~r~L~rG~~I~~~Dl~~~~~~~~~l~~~~~td~~~viG~~~rR~l~aGq~I~~~~L~~ 199 (261)
T PRK06804 135 YLPVWVAKQTLERGRKVQADDIELKKKNISGVQGGYITDPDEAIGLTIKRRIRQLQAVIPSQLEQ 199 (261)
T ss_pred EEEEEEEccCcCCCCCcCHHHeEEEEEehhcCCccccCCHHHhcCceEEeecCCCCeECHHHcCC
Confidence 4566899999999999999999997654233332 4568999999999999999999988863
No 40
>TIGR03177 pilus_cpaB Flp pilus assembly protein CpaB. Members of this protein family are the CpaB protein of Flp-type pilus assembly. Similar proteins include the FlgA protein of bacterial flagellum biosynthesis.
Probab=96.53 E-value=0.0048 Score=58.49 Aligned_cols=64 Identities=22% Similarity=0.291 Sum_probs=51.9
Q ss_pred cccceEEEEeecCCCCcccccCCcEEeeCCCCCCCc---chHHHHhcchhhcccCCCCcccCCCCCC
Q psy17999 269 AKLGKCIVSSCDIQAGTVLQEFHVCIKVAEPKGICG---TRYASVMGRKVNRDIRRDESIQDIDLDP 332 (335)
Q Consensus 269 ~~~rrsl~a~~di~~G~~l~~~dl~~kr~~~~Gi~p---~~~~~viG~~~~~di~~~~~i~~~~l~~ 332 (335)
.....-++++++|++|+.|+.+|+..++-|...+++ ...+.++|+.++++|.+|++|+.++|..
T Consensus 33 ~~~~~V~VA~~~I~~G~~I~~~dl~~~~vp~~~~~~~~~~~~~~l~G~~a~~~i~aG~~i~~~~l~~ 99 (261)
T TIGR03177 33 VPTVPVVVAARDLPAGTPITAEDLRWVLWPEASVPAGAFDDIAQLVGRIVRRPLEAGEPILEAKLAP 99 (261)
T ss_pred CCceeEEEEcccCCCCCCCCHHHceEEecccccCCCccccCHHHhCCchhhcccCCCCcccHHHccC
Confidence 346678999999999999999999997644222222 4568899999999999999999888853
No 41
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=96.36 E-value=0.56 Score=44.84 Aligned_cols=184 Identities=14% Similarity=0.145 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHHcCCceEeccCCh------hhHHHHHhCCCCEEEEc----------CCCCCCHHH----HHHHHhc-CC
Q psy17999 49 EEYVMLQQCADQVDIMFTASAMDQ------VSFDFLLSANVPFIKIG----------SGDSNNIPL----IKYAASK-QK 107 (335)
Q Consensus 49 e~~~~L~~~~~~~Gi~f~stpfd~------~svd~l~~l~v~~~KIa----------S~d~~n~~L----L~~~a~~-gk 107 (335)
.+++.+.+..++.+.+++.+.+.. +.+..+++.|+|++-|- +.-..+..+ ++++-+. ++
T Consensus 76 ~~~~~~~~~~~~~~~p~ivsi~g~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~~~ 155 (296)
T cd04740 76 AFLEELLPWLREFGTPVIASIAGSTVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKATDV 155 (296)
T ss_pred HHHHHHHHHhhcCCCcEEEEEecCCHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhccCC
Confidence 455566665555778888887542 23455667789998882 223355554 4444444 89
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHHh-cCCCCceeec--ccCCCCCCCCcccccCceEEeee-cCCC-CCCccCCCchHHHH
Q psy17999 108 PLIISTGMLPSIEHVDNIYTTVKQ-YHSNLSILHC--VSAYPTPYPTVKQYHSNLSILHC-VSAY-PTPYHDINLNVIHT 182 (335)
Q Consensus 108 PvilStG~~~tl~Ei~~Av~~i~~-g~~~~~~~~c--~~g~~~~~~~~~~~~~~l~llHC-~s~Y-P~~~~~~nL~~i~~ 182 (335)
||.++.+ ++.+|+.+.++.+.+ |-.. +.+. ..|.... .... .. .+.- ...| +.+.....+..+..
T Consensus 156 Pv~vKl~--~~~~~~~~~a~~~~~~G~d~--i~~~nt~~g~~~~---~~~~--~~-~~~~~~gg~sg~~~~~~~~~~i~~ 225 (296)
T cd04740 156 PVIVKLT--PNVTDIVEIARAAEEAGADG--LTLINTLKGMAID---IETR--KP-ILGNVTGGLSGPAIKPIALRMVYQ 225 (296)
T ss_pred CEEEEeC--CCchhHHHHHHHHHHcCCCE--EEEECCCcccccc---cccC--ce-eecCCcceecCcccchHHHHHHHH
Confidence 9999965 355677776666665 4331 1111 0111000 0000 00 0000 0011 01112346788899
Q ss_pred HHHHCCCCCeecCCCCCChHHHHHHHHcCCcEEEeccCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhC
Q psy17999 183 LRSRYPDIPIGYSGHENGVHVCYAAVAMGAQIIEKHFTLDKSWKGSDHASSLTPPELKALVTGIRDIEQSLG 254 (335)
Q Consensus 183 L~~~fp~~pVG~SdHt~g~~~~~aAvalGA~vIEkH~tld~~~~G~Dh~~Sl~p~el~~lv~~ir~~~~alG 254 (335)
+++.+ ++||.-++=-....-+..++..||+.+- +-+.+- . +|.-+.++.+.+.+.-...|
T Consensus 226 i~~~~-~ipii~~GGI~~~~da~~~l~~GAd~V~----igra~l------~-~p~~~~~i~~~l~~~~~~~g 285 (296)
T cd04740 226 VYKAV-EIPIIGVGGIASGEDALEFLMAGASAVQ----VGTANF------V-DPEAFKEIIEGLEAYLDEEG 285 (296)
T ss_pred HHHhc-CCCEEEECCCCCHHHHHHHHHcCCCEEE----Echhhh------c-ChHHHHHHHHHHHHHHHHcC
Confidence 99988 8999655434345556667789999887 223221 1 57788888888876555545
No 42
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=96.32 E-value=0.04 Score=54.42 Aligned_cols=142 Identities=19% Similarity=0.201 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHHcCCceEecc--CChhhHHHHHhCCCCEEEEcCCCCCCHHHH----HHHHhcCCcEEE---eCCCCCC
Q psy17999 48 QEEYVMLQQCADQVDIMFTASA--MDQVSFDFLLSANVPFIKIGSGDSNNIPLI----KYAASKQKPLII---STGMLPS 118 (335)
Q Consensus 48 ~e~~~~L~~~~~~~Gi~f~stp--fd~~svd~l~~l~v~~~KIaS~d~~n~~LL----~~~a~~gkPvil---StG~~~t 118 (335)
.+.++.+.+...+..+..+..| .+.+.++.+.+.|++.+.|+.. +++.+.+ +++-+.|.-|.+ .+++. +
T Consensus 65 ~e~i~~~~~~~~~~~~~~ll~pg~~~~~dl~~a~~~gvd~iri~~~-~~e~~~~~~~i~~ak~~G~~v~~~l~~a~~~-~ 142 (337)
T PRK08195 65 EEYIEAAAEVVKQAKIAALLLPGIGTVDDLKMAYDAGVRVVRVATH-CTEADVSEQHIGLARELGMDTVGFLMMSHMA-P 142 (337)
T ss_pred HHHHHHHHHhCCCCEEEEEeccCcccHHHHHHHHHcCCCEEEEEEe-cchHHHHHHHHHHHHHCCCeEEEEEEeccCC-C
Confidence 4445555555444444444544 4678899999999999998853 3333333 333445765543 35677 9
Q ss_pred HHHHHHHHHHHHh-cCCCCceeecccCCCCCCCCcccccCceEEeeecCCCCCCccCCCchHHHHHHHHC-CCCCeecCC
Q psy17999 119 IEHVDNIYTTVKQ-YHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYPTPYHDINLNVIHTLRSRY-PDIPIGYSG 196 (335)
Q Consensus 119 l~Ei~~Av~~i~~-g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~s~YP~~~~~~nL~~i~~L~~~f-p~~pVG~Sd 196 (335)
.+++.+.++.+.+ |.. .|-+|++. .+=+|.+-. ..+..+++.+ |+++|||=.
T Consensus 143 ~e~l~~~a~~~~~~Ga~--~i~i~DT~----------------------G~~~P~~v~--~~v~~l~~~l~~~i~ig~H~ 196 (337)
T PRK08195 143 PEKLAEQAKLMESYGAQ--CVYVVDSA----------------------GALLPEDVR--DRVRALRAALKPDTQVGFHG 196 (337)
T ss_pred HHHHHHHHHHHHhCCCC--EEEeCCCC----------------------CCCCHHHHH--HHHHHHHHhcCCCCeEEEEe
Confidence 9999998888877 654 45555553 122233222 3367788888 689999988
Q ss_pred CCC-C--hHHHHHHHHcCCcEEEe
Q psy17999 197 HEN-G--VHVCYAAVAMGAQIIEK 217 (335)
Q Consensus 197 Ht~-g--~~~~~aAvalGA~vIEk 217 (335)
|.. | ..-+++|+..||++|+-
T Consensus 197 HnnlGla~ANslaAi~aGa~~iD~ 220 (337)
T PRK08195 197 HNNLGLGVANSLAAVEAGATRIDG 220 (337)
T ss_pred CCCcchHHHHHHHHHHhCCCEEEe
Confidence 763 4 56679999999999883
No 43
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=96.29 E-value=0.055 Score=51.60 Aligned_cols=144 Identities=18% Similarity=0.166 Sum_probs=96.1
Q ss_pred CCHHHHHHHHHHHH-HcCCceEeccC--ChhhHHHHHhCCCCEEEEcCCCCCCHHH----HHHHHhcCCcEEEe---CCC
Q psy17999 46 FSQEEYVMLQQCAD-QVDIMFTASAM--DQVSFDFLLSANVPFIKIGSGDSNNIPL----IKYAASKQKPLIIS---TGM 115 (335)
Q Consensus 46 l~~e~~~~L~~~~~-~~Gi~f~stpf--d~~svd~l~~l~v~~~KIaS~d~~n~~L----L~~~a~~gkPvilS---tG~ 115 (335)
.+.+.++.+.+..+ +.-+..++.+- +.+.++...+.+++.+.|.- ..++++. ++++.+.|..|.++ +..
T Consensus 56 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~gv~~iri~~-~~~~~~~~~~~i~~ak~~G~~v~~~~~~a~~ 134 (266)
T cd07944 56 CDDEFLRRLLGDSKGNTKIAVMVDYGNDDIDLLEPASGSVVDMIRVAF-HKHEFDEALPLIKAIKEKGYEVFFNLMAISG 134 (266)
T ss_pred CCHHHHHHHHhhhccCCEEEEEECCCCCCHHHHHHHhcCCcCEEEEec-ccccHHHHHHHHHHHHHCCCeEEEEEEeecC
Confidence 34567777777664 56666666664 57778888888999988863 3345543 34444467777666 344
Q ss_pred CCCHHHHHHHHHHHHh-cCCCCceeecccCCCCCCCCcccccCceEEeeecCCCCCCccCCCchHHHHHHHHCCC-CCee
Q psy17999 116 LPSIEHVDNIYTTVKQ-YHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYPTPYHDINLNVIHTLRSRYPD-IPIG 193 (335)
Q Consensus 116 ~~tl~Ei~~Av~~i~~-g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~s~YP~~~~~~nL~~i~~L~~~fp~-~pVG 193 (335)
. +.+++.+.++.+.+ |-. .+-+|++. .+=+|..-. ..+..+++.++. +|||
T Consensus 135 ~-~~~~~~~~~~~~~~~g~~--~i~l~DT~----------------------G~~~P~~v~--~lv~~l~~~~~~~~~i~ 187 (266)
T cd07944 135 Y-SDEELLELLELVNEIKPD--VFYIVDSF----------------------GSMYPEDIK--RIISLLRSNLDKDIKLG 187 (266)
T ss_pred C-CHHHHHHHHHHHHhCCCC--EEEEecCC----------------------CCCCHHHHH--HHHHHHHHhcCCCceEE
Confidence 6 89999998888776 544 45555542 122233222 236678888842 9999
Q ss_pred cCCCCC-C--hHHHHHHHHcCCcEEEe
Q psy17999 194 YSGHEN-G--VHVCYAAVAMGAQIIEK 217 (335)
Q Consensus 194 ~SdHt~-g--~~~~~aAvalGA~vIEk 217 (335)
|=.|.. | ..-+++|+..||++|+-
T Consensus 188 ~H~Hn~~Gla~AN~laA~~aGa~~vd~ 214 (266)
T cd07944 188 FHAHNNLQLALANTLEAIELGVEIIDA 214 (266)
T ss_pred EEeCCCccHHHHHHHHHHHcCCCEEEE
Confidence 988864 4 55678999999999883
No 44
>PRK15452 putative protease; Provisional
Probab=96.25 E-value=0.062 Score=55.10 Aligned_cols=105 Identities=14% Similarity=0.208 Sum_probs=75.1
Q ss_pred cCCHHHHHHHHHHHHHcCCceEec----cCChhh------HHHHHhCCCCEEEEcCCCCCCHHHHHHHHhc--CCcEEEe
Q psy17999 45 EFSQEEYVMLQQCADQVDIMFTAS----AMDQVS------FDFLLSANVPFIKIGSGDSNNIPLIKYAASK--QKPLIIS 112 (335)
Q Consensus 45 el~~e~~~~L~~~~~~~Gi~f~st----pfd~~s------vd~l~~l~v~~~KIaS~d~~n~~LL~~~a~~--gkPvilS 112 (335)
.|+.+++++..++|++.|+.+..+ +++.+- ++.+.++++|.+-|+ |+-++..+.+. +.||++|
T Consensus 42 ~f~~edl~eav~~ah~~g~kvyvt~n~i~~e~el~~~~~~l~~l~~~gvDgvIV~-----d~G~l~~~ke~~p~l~ih~s 116 (443)
T PRK15452 42 EFNHENLALGINEAHALGKKFYVVVNIAPHNAKLKTFIRDLEPVIAMKPDALIMS-----DPGLIMMVREHFPEMPIHLS 116 (443)
T ss_pred CCCHHHHHHHHHHHHHcCCEEEEEecCcCCHHHHHHHHHHHHHHHhCCCCEEEEc-----CHHHHHHHHHhCCCCeEEEE
Confidence 467789999999999999999887 555443 455667888887765 57777777764 7899999
Q ss_pred CCCCCCHHHHHHHHHHHHh-cCCCCceeecccCCCCCCCCcccccCceEEeeecCCCCCCccCCCchHHHHHHHHCCCC
Q psy17999 113 TGMLPSIEHVDNIYTTVKQ-YHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYPTPYHDINLNVIHTLRSRYPDI 190 (335)
Q Consensus 113 tG~~~tl~Ei~~Av~~i~~-g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~s~YP~~~~~~nL~~i~~L~~~fp~~ 190 (335)
|.+. ... ..+++++.. |-. .++| .-+++|..|..|++..|++
T Consensus 117 tqln-i~N--~~a~~f~~~lG~~-----------------------rvvL----------SrELsl~EI~~i~~~~~~~ 159 (443)
T PRK15452 117 VQAN-AVN--WATVKFWQQMGLT-----------------------RVIL----------SRELSLEEIEEIRQQCPDM 159 (443)
T ss_pred eccc-CCC--HHHHHHHHHCCCc-----------------------EEEE----------CCcCCHHHHHHHHhhCCCC
Confidence 9987 333 345666665 433 2221 2368999999998665444
No 45
>PRK12822 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional
Probab=96.25 E-value=0.011 Score=58.56 Aligned_cols=79 Identities=13% Similarity=0.127 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHcCCceEeccCChhhHHHHHhCCCCEEEEcCCCCCCHHHHHHHHhcCCcEEEeCCCCCCHHHHHHHHHH
Q psy17999 49 EEYVMLQQCADQVDIMFTASAMDQVSFDFLLSANVPFIKIGSGDSNNIPLIKYAASKQKPLIISTGMLPSIEHVDNIYTT 128 (335)
Q Consensus 49 e~~~~L~~~~~~~Gi~f~stpfd~~svd~l~~l~v~~~KIaS~d~~n~~LL~~~a~~gkPvilStG~~~tl~Ei~~Av~~ 128 (335)
+..++|.....+.|+++.++..|+...+++.++ ++...||++.+.|..+.+.++.+++||.++.|..++++--.+|+..
T Consensus 124 ~i~R~ll~~~~~~GlPvatE~ld~~~~qy~~Dl-isw~aIGARt~esq~hrelaSgls~PVgfKngt~g~i~~AidAi~a 202 (356)
T PRK12822 124 RLARQLLLSINTLGLATATEFLDTTSFPYIADL-ICWGAIGARTTESQVHRQLASALPCPVGFKNGTDGNIRIAIDAILA 202 (356)
T ss_pred HHHHHHHHHHHHhCCCEEEeecccccHHHHHHH-HHhhhhccchhcCHHHHHHHhCCCCceEecCCCCCCHHHHHHHHHH
Confidence 445555555999999999999999999999988 8888999999999999999999999999999988776666555543
No 46
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=96.24 E-value=0.065 Score=52.88 Aligned_cols=142 Identities=13% Similarity=0.132 Sum_probs=95.4
Q ss_pred CHHHHHHHHHHHHHcCCceEecc--CChhhHHHHHhCCCCEEEEcCCCCCCHH----HHHHHHhcCCcEE---EeCCCCC
Q psy17999 47 SQEEYVMLQQCADQVDIMFTASA--MDQVSFDFLLSANVPFIKIGSGDSNNIP----LIKYAASKQKPLI---ISTGMLP 117 (335)
Q Consensus 47 ~~e~~~~L~~~~~~~Gi~f~stp--fd~~svd~l~~l~v~~~KIaS~d~~n~~----LL~~~a~~gkPvi---lStG~~~ 117 (335)
+.++++.+.+.+++.-+..+..| .+.+.++.+.+.|++.+.|+.. +++.+ .++.+-+.|.-+. ..+.+.
T Consensus 63 ~~e~i~~~~~~~~~~~~~~ll~pg~~~~~dl~~a~~~gvd~iri~~~-~~e~d~~~~~i~~ak~~G~~v~~~l~~s~~~- 140 (333)
T TIGR03217 63 DLEYIEAAADVVKRAKVAVLLLPGIGTVHDLKAAYDAGARTVRVATH-CTEADVSEQHIGMARELGMDTVGFLMMSHMT- 140 (333)
T ss_pred hHHHHHHHHHhCCCCEEEEEeccCccCHHHHHHHHHCCCCEEEEEec-cchHHHHHHHHHHHHHcCCeEEEEEEcccCC-
Confidence 44667777777666656656655 5778899999999999999864 33333 3333444577654 335567
Q ss_pred CHHHHHHHHHHHHh-cCCCCceeecccCCCCCCCCcccccCceEEeeecCCCCCCccCCCchHHHHHHHHCC-CCCeecC
Q psy17999 118 SIEHVDNIYTTVKQ-YHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYPTPYHDINLNVIHTLRSRYP-DIPIGYS 195 (335)
Q Consensus 118 tl~Ei~~Av~~i~~-g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~s~YP~~~~~~nL~~i~~L~~~fp-~~pVG~S 195 (335)
+.+++.+.++.+.+ |.. .|-+|++. .+=+|.+-. ..+..+++.++ ++||||=
T Consensus 141 ~~e~l~~~a~~~~~~Ga~--~i~i~DT~----------------------G~~~P~~v~--~~v~~l~~~l~~~i~ig~H 194 (333)
T TIGR03217 141 PPEKLAEQAKLMESYGAD--CVYIVDSA----------------------GAMLPDDVR--DRVRALKAVLKPETQVGFH 194 (333)
T ss_pred CHHHHHHHHHHHHhcCCC--EEEEccCC----------------------CCCCHHHHH--HHHHHHHHhCCCCceEEEE
Confidence 89999999988887 644 45555553 122222222 33677888873 5999998
Q ss_pred CCCC-C--hHHHHHHHHcCCcEEE
Q psy17999 196 GHEN-G--VHVCYAAVAMGAQIIE 216 (335)
Q Consensus 196 dHt~-g--~~~~~aAvalGA~vIE 216 (335)
.|.. | ..-+++|+..||+.|+
T Consensus 195 ~HnnlGla~ANslaAi~aGa~~iD 218 (333)
T TIGR03217 195 AHHNLSLAVANSIAAIEAGATRID 218 (333)
T ss_pred eCCCCchHHHHHHHHHHhCCCEEE
Confidence 7753 4 6667999999999987
No 47
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=96.21 E-value=0.11 Score=49.39 Aligned_cols=84 Identities=8% Similarity=0.036 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHcCCceEec----------cCChhh----HHHHHhCCCCEEEEcCCCCCCHHHHHHHHh-cCCcEEEe
Q psy17999 48 QEEYVMLQQCADQVDIMFTAS----------AMDQVS----FDFLLSANVPFIKIGSGDSNNIPLIKYAAS-KQKPLIIS 112 (335)
Q Consensus 48 ~e~~~~L~~~~~~~Gi~f~st----------pfd~~s----vd~l~~l~v~~~KIaS~d~~n~~LL~~~a~-~gkPvilS 112 (335)
.++..++.+.|++.|++++.- .++.+. +..+.++|+|++|.... ....+++++.+ ...||+.+
T Consensus 125 ~~~~~~v~~~~~~~g~pl~vi~~~~g~~~e~~~~~~~i~~a~~~a~e~GAD~vKt~~~--~~~~~l~~~~~~~~ipV~a~ 202 (267)
T PRK07226 125 LEDLGEVAEECEEWGMPLLAMMYPRGPGIKNEYDPEVVAHAARVAAELGADIVKTNYT--GDPESFREVVEGCPVPVVIA 202 (267)
T ss_pred HHHHHHHHHHHHHcCCcEEEEEecCCCccCCCccHHHHHHHHHHHHHHCCCEEeeCCC--CCHHHHHHHHHhCCCCEEEE
Confidence 478999999999999998773 334333 45666789999999743 36788988876 48999888
Q ss_pred CCCCC-CHHHHHHHHHHHHh-cC
Q psy17999 113 TGMLP-SIEHVDNIYTTVKQ-YH 133 (335)
Q Consensus 113 tG~~~-tl~Ei~~Av~~i~~-g~ 133 (335)
=|... |+++...-+..+.. |.
T Consensus 203 GGi~~~~~~~~l~~v~~~~~aGA 225 (267)
T PRK07226 203 GGPKTDTDREFLEMVRDAMEAGA 225 (267)
T ss_pred eCCCCCCHHHHHHHHHHHHHcCC
Confidence 88663 56666655544444 43
No 48
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=96.21 E-value=0.047 Score=44.45 Aligned_cols=75 Identities=15% Similarity=0.200 Sum_probs=63.9
Q ss_pred HHHHHHHHcCCceEeccCChhhHHHHHhCCCCEEEEcCCCCCCHHHHHHHHhcCCcEEEeCCCCCCHHHHHHHHHHHHhc
Q psy17999 53 MLQQCADQVDIMFTASAMDQVSFDFLLSANVPFIKIGSGDSNNIPLIKYAASKQKPLIISTGMLPSIEHVDNIYTTVKQY 132 (335)
Q Consensus 53 ~L~~~~~~~Gi~f~stpfd~~svd~l~~l~v~~~KIaS~d~~n~~LL~~~a~~gkPvilStG~~~tl~Ei~~Av~~i~~g 132 (335)
...+.+++.|+.++++ .-+++.+-++|++-|++.+-.+.++++++.+.|++|++...++.+++|.++.++..++.
T Consensus 38 ~~~~~~~~~~~~~~~~-----~~~ll~~~~~D~V~I~tp~~~h~~~~~~~l~~g~~v~~EKP~~~~~~~~~~l~~~a~~~ 112 (120)
T PF01408_consen 38 RAEAFAEKYGIPVYTD-----LEELLADEDVDAVIIATPPSSHAEIAKKALEAGKHVLVEKPLALTLEEAEELVEAAKEK 112 (120)
T ss_dssp HHHHHHHHTTSEEESS-----HHHHHHHTTESEEEEESSGGGHHHHHHHHHHTTSEEEEESSSSSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccchhH-----HHHHHHhhcCCEEEEecCCcchHHHHHHHHHcCCEEEEEcCCcCCHHHHHHHHHHHHHh
Confidence 3445589999995555 22455556799999999999999999999999999999999999999999999988873
No 49
>PRK08515 flgA flagellar basal body P-ring biosynthesis protein FlgA; Reviewed
Probab=96.18 E-value=0.0017 Score=60.60 Aligned_cols=62 Identities=8% Similarity=-0.092 Sum_probs=46.7
Q ss_pred cceEEEEeecCCCCcccccCCcEEeeCCCCCCCcchH--HHHhcchhhcccCCCCcccCCCCCC
Q psy17999 271 LGKCIVSSCDIQAGTVLQEFHVCIKVAEPKGICGTRY--ASVMGRKVNRDIRRDESIQDIDLDP 332 (335)
Q Consensus 271 ~rrsl~a~~di~~G~~l~~~dl~~kr~~~~Gi~p~~~--~~viG~~~~~di~~~~~i~~~~l~~ 332 (335)
...-++|+++|.+|++|+++|+..++-+-..+++..+ ..++|+.++|.|++|++|+.++|..
T Consensus 99 ~~~v~Va~r~i~rG~~I~~~dl~~~~~~~~~l~~~~~~~~~~~G~~~kr~i~~G~~i~~~~l~~ 162 (222)
T PRK08515 99 NLEVLKSIRAIKKDDNLTANNTKKKRIPFGKLPKNPLLEDDIDNLSAKSFIPPGTILTADKFKA 162 (222)
T ss_pred EEEEEEEccccCCCCCCCHHHeEEEEEEhhhcCcccccchhhCCeEEEEEcCCCCeECHHHcCC
Confidence 3456899999999999999999887632112221111 2467999999999999999988863
No 50
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=96.16 E-value=0.037 Score=50.79 Aligned_cols=78 Identities=13% Similarity=0.069 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHH-cCCceEeccCChhhHHHHHhCCCCEEEEcCC---------CCCCHHHHHHHHhc-CCcEEEeCCCCC
Q psy17999 49 EEYVMLQQCADQ-VDIMFTASAMDQVSFDFLLSANVPFIKIGSG---------DSNNIPLIKYAASK-QKPLIISTGMLP 117 (335)
Q Consensus 49 e~~~~L~~~~~~-~Gi~f~stpfd~~svd~l~~l~v~~~KIaS~---------d~~n~~LL~~~a~~-gkPvilStG~~~ 117 (335)
++..++.+.+++ .|+.++....+.+.+..+.+.|++++.+.+. .-.++.+++++.+. ++||+..-|.+
T Consensus 105 ~~~~~~i~~~~~~~~i~vi~~v~t~ee~~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~~~iPvia~GGI~- 183 (221)
T PRK01130 105 ETLAELVKRIKEYPGQLLMADCSTLEEGLAAQKLGFDFIGTTLSGYTEETKKPEEPDFALLKELLKAVGCPVIAEGRIN- 183 (221)
T ss_pred CCHHHHHHHHHhCCCCeEEEeCCCHHHHHHHHHcCCCEEEcCCceeecCCCCCCCcCHHHHHHHHHhCCCCEEEECCCC-
Confidence 677899999999 9999999999999999999999999988532 33457888888764 89999999999
Q ss_pred CHHHHHHHHH
Q psy17999 118 SIEHVDNIYT 127 (335)
Q Consensus 118 tl~Ei~~Av~ 127 (335)
|.+++..+++
T Consensus 184 t~~~~~~~l~ 193 (221)
T PRK01130 184 TPEQAKKALE 193 (221)
T ss_pred CHHHHHHHHH
Confidence 9999988755
No 51
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=96.13 E-value=0.28 Score=47.12 Aligned_cols=185 Identities=15% Similarity=0.155 Sum_probs=105.9
Q ss_pred HHHHHHHHHHHcCCceEeccCC--hhh----HHHHHhCC-CCEEEE----------cCCCCCCHHHHHH----HHhc-CC
Q psy17999 50 EYVMLQQCADQVDIMFTASAMD--QVS----FDFLLSAN-VPFIKI----------GSGDSNNIPLIKY----AASK-QK 107 (335)
Q Consensus 50 ~~~~L~~~~~~~Gi~f~stpfd--~~s----vd~l~~l~-v~~~KI----------aS~d~~n~~LL~~----~a~~-gk 107 (335)
+++.+....++.++.++.+.+- .+. +..+++.| +|++-| ++.-..+..++.+ +.+. ++
T Consensus 79 ~~~~~~~~~~~~~~p~i~si~g~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~~~ 158 (301)
T PRK07259 79 FIEEELPWLEEFDTPIIANVAGSTEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVVKV 158 (301)
T ss_pred HHHHHHHHHhccCCcEEEEeccCCHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCC
Confidence 4555556556668888888753 333 44555678 999988 2334445555544 3333 89
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHHh-cCCCCceeecccCCCCCCCCcccccCceEE---eeecCCCCCCccCCCchHHHHH
Q psy17999 108 PLIISTGMLPSIEHVDNIYTTVKQ-YHSNLSILHCVSAYPTPYPTVKQYHSNLSI---LHCVSAYPTPYHDINLNVIHTL 183 (335)
Q Consensus 108 PvilStG~~~tl~Ei~~Av~~i~~-g~~~~~~~~c~~g~~~~~~~~~~~~~~l~l---lHC~s~YP~~~~~~nL~~i~~L 183 (335)
||+++.+. +.+|+...++.+.+ |-..+.++-+..|... +.+.. ...+ ....|..+ .....+..+..+
T Consensus 159 pv~vKl~~--~~~~~~~~a~~l~~~G~d~i~~~nt~~g~~~---~~~~~--~~~~~~~~gg~sg~~--~~p~~l~~v~~i 229 (301)
T PRK07259 159 PVIVKLTP--NVTDIVEIAKAAEEAGADGLSLINTLKGMAI---DIKTR--KPILANVTGGLSGPA--IKPIALRMVYQV 229 (301)
T ss_pred CEEEEcCC--CchhHHHHHHHHHHcCCCEEEEEcccccccc---ccccC--ceeecCCcCccCCcC--cccccHHHHHHH
Confidence 99999874 56687777777766 4331111111111110 00000 0000 00111111 123578889999
Q ss_pred HHHCCCCCeecCCCCCChHHHHHHHHcCCcEEEeccCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCC
Q psy17999 184 RSRYPDIPIGYSGHENGVHVCYAAVAMGAQIIEKHFTLDKSWKGSDHASSLTPPELKALVTGIRDIEQSLGS 255 (335)
Q Consensus 184 ~~~fp~~pVG~SdHt~g~~~~~aAvalGA~vIEkH~tld~~~~G~Dh~~Sl~p~el~~lv~~ir~~~~alG~ 255 (335)
++.. ++||..++--....-+..++..||+.+- +-+..- . +|.-+.++.+.++..-...|.
T Consensus 230 ~~~~-~ipvi~~GGI~~~~da~~~l~aGAd~V~----igr~ll------~-~P~~~~~i~~~l~~~~~~~g~ 289 (301)
T PRK07259 230 YQAV-DIPIIGMGGISSAEDAIEFIMAGASAVQ----VGTANF------Y-DPYAFPKIIEGLEAYLDKYGI 289 (301)
T ss_pred HHhC-CCCEEEECCCCCHHHHHHHHHcCCCcee----EcHHHh------c-CcHHHHHHHHHHHHHHHHcCC
Confidence 9988 8999777666556666667789999766 222211 1 577888888888766655553
No 52
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=96.10 E-value=0.13 Score=47.82 Aligned_cols=131 Identities=21% Similarity=0.244 Sum_probs=84.8
Q ss_pred CceEe-ccCChhhHHHHHhCCCCEEEEcCCCCC-------------CH----HHHHHHHhcCCcEEEeC-C--C--CCCH
Q psy17999 63 IMFTA-SAMDQVSFDFLLSANVPFIKIGSGDSN-------------NI----PLIKYAASKQKPLIIST-G--M--LPSI 119 (335)
Q Consensus 63 i~f~s-tpfd~~svd~l~~l~v~~~KIaS~d~~-------------n~----~LL~~~a~~gkPvilSt-G--~--~~tl 119 (335)
+.+.+ +.-..+.++.+.+.|++.+.|.-.-.. ++ ..++++.+.|.++.++. . . . +.
T Consensus 67 ~~~~~l~~~~~~~i~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~-~~ 145 (265)
T cd03174 67 VKLQALVRNREKGIERALEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGCKT-DP 145 (265)
T ss_pred cEEEEEccCchhhHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCCCC-CH
Confidence 55522 222377788888888888777643221 22 33445556688877775 2 2 4 78
Q ss_pred HHHHHHHHHHHh-cCCCCceeecccCCCCCCCCcccccCceEEeeecCCCCCCccCCCchHHHHHHHHCCCCCeecCCCC
Q psy17999 120 EHVDNIYTTVKQ-YHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYPTPYHDINLNVIHTLRSRYPDIPIGYSGHE 198 (335)
Q Consensus 120 ~Ei~~Av~~i~~-g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~s~YP~~~~~~nL~~i~~L~~~fp~~pVG~SdHt 198 (335)
+++.+.++.+.. |.. .+-+|+. ..+-+|.+-.++ +..+++.+|++++||-.|.
T Consensus 146 ~~l~~~~~~~~~~g~~--~i~l~Dt----------------------~G~~~P~~v~~l--i~~l~~~~~~~~~~~H~Hn 199 (265)
T cd03174 146 EYVLEVAKALEEAGAD--EISLKDT----------------------VGLATPEEVAEL--VKALREALPDVPLGLHTHN 199 (265)
T ss_pred HHHHHHHHHHHHcCCC--EEEechh----------------------cCCcCHHHHHHH--HHHHHHhCCCCeEEEEeCC
Confidence 888888887776 543 3333333 233444433333 7888999977999998886
Q ss_pred C-C--hHHHHHHHHcCCcEEEeccCCC
Q psy17999 199 N-G--VHVCYAAVAMGAQIIEKHFTLD 222 (335)
Q Consensus 199 ~-g--~~~~~aAvalGA~vIEkH~tld 222 (335)
. | ..-+++|+..||+.|+ .|+.
T Consensus 200 ~~gla~an~laA~~aG~~~id--~s~~ 224 (265)
T cd03174 200 TLGLAVANSLAALEAGADRVD--GSVN 224 (265)
T ss_pred CCChHHHHHHHHHHcCCCEEE--eccc
Confidence 4 4 6668999999999997 4553
No 53
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=96.05 E-value=0.37 Score=45.82 Aligned_cols=166 Identities=13% Similarity=0.137 Sum_probs=90.1
Q ss_pred CCHHHHH-HHHHHHHH-cCCceEeccCC--hhh----HHHHHhCCCCEEEEcCC--C-------CCCHHH----HHHHHh
Q psy17999 46 FSQEEYV-MLQQCADQ-VDIMFTASAMD--QVS----FDFLLSANVPFIKIGSG--D-------SNNIPL----IKYAAS 104 (335)
Q Consensus 46 l~~e~~~-~L~~~~~~-~Gi~f~stpfd--~~s----vd~l~~l~v~~~KIaS~--d-------~~n~~L----L~~~a~ 104 (335)
.+.+.|. ++.+..+. .+..++.+.+- .+. ++.+.+.|+|++-|--+ + .++..+ ++++.+
T Consensus 80 ~g~~~~~~~i~~~~~~~~~~pvi~si~g~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~ 159 (289)
T cd02810 80 LGLDVWLQDIAKAKKEFPGQPLIASVGGSSKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKA 159 (289)
T ss_pred cCHHHHHHHHHHHHhccCCCeEEEEeccCCHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHH
Confidence 3445444 44443333 47888887753 333 55666778999887422 1 234444 454544
Q ss_pred c-CCcEEEeCCCCCCHHHHHHHHHHHHh-cCCCCceeecccCCCCCCCCccccc-CceEEeeecCCCCCCccCCCchHHH
Q psy17999 105 K-QKPLIISTGMLPSIEHVDNIYTTVKQ-YHSNLSILHCVSAYPTPYPTVKQYH-SNLSILHCVSAYPTPYHDINLNVIH 181 (335)
Q Consensus 105 ~-gkPvilStG~~~tl~Ei~~Av~~i~~-g~~~~~~~~c~~g~~~~~~~~~~~~-~~l~llHC~s~YP~~~~~~nL~~i~ 181 (335)
. ++||+++.+...+.+|+.+.++.+.+ |-. .+...-+.....-+.+... .........|.+|. ....+..+.
T Consensus 160 ~~~~pv~vKl~~~~~~~~~~~~a~~l~~~Gad---~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~--~~~~~~~v~ 234 (289)
T cd02810 160 AVDIPLLVKLSPYFDLEDIVELAKAAERAGAD---GLTAINTISGRVVDLKTVGPGPKRGTGGLSGAPI--RPLALRWVA 234 (289)
T ss_pred ccCCCEEEEeCCCCCHHHHHHHHHHHHHcCCC---EEEEEcccCccceecccCccccCCCCCccCcHHH--HHHHHHHHH
Confidence 3 89999998866588899998888876 432 2222111110000000000 00000000111111 224577889
Q ss_pred HHHHHCC-CCCeecCCCCCChHHHHHHHHcCCcEEE
Q psy17999 182 TLRSRYP-DIPIGYSGHENGVHVCYAAVAMGAQIIE 216 (335)
Q Consensus 182 ~L~~~fp-~~pVG~SdHt~g~~~~~aAvalGA~vIE 216 (335)
.+++.+| ++||.-++--....-+...+++||+.+-
T Consensus 235 ~i~~~~~~~ipiia~GGI~~~~da~~~l~~GAd~V~ 270 (289)
T cd02810 235 RLAARLQLDIPIIGVGGIDSGEDVLEMLMAGASAVQ 270 (289)
T ss_pred HHHHhcCCCCCEEEECCCCCHHHHHHHHHcCccHhe
Confidence 9998886 7898666555555556667778998554
No 54
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=95.99 E-value=0.18 Score=47.77 Aligned_cols=144 Identities=21% Similarity=0.228 Sum_probs=82.5
Q ss_pred CHHHHHHHHHHHH-HcCCceEecc-CChhhHHHHHhCC----CCEEEEcC--CCC-----------CCH----HHHHHHH
Q psy17999 47 SQEEYVMLQQCAD-QVDIMFTASA-MDQVSFDFLLSAN----VPFIKIGS--GDS-----------NNI----PLIKYAA 103 (335)
Q Consensus 47 ~~e~~~~L~~~~~-~~Gi~f~stp-fd~~svd~l~~l~----v~~~KIaS--~d~-----------~n~----~LL~~~a 103 (335)
+++++..+....+ ..+..+.+-. -....++.+.+.+ ++.+.+.- .+. .++ +.++++.
T Consensus 45 ~~~~~~~~~~l~~~~~~~~~~~l~r~~~~~v~~a~~~~~~~~~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~ 124 (268)
T cd07940 45 SPGDFEAVKRIAREVLNAEICGLARAVKKDIDAAAEALKPAKVDRIHTFIATSDIHLKYKLKKTREEVLERAVEAVEYAK 124 (268)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEEccCCHhhHHHHHHhCCCCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 3444444444443 1233333322 3456666666666 77766632 111 122 3444555
Q ss_pred hcCCcEEEe---CCCCCCHHHHHHHHHHHHh-cCCCCceeecccCCCCCCCCcccccCceEEeeecCCCCCCccCCCchH
Q psy17999 104 SKQKPLIIS---TGMLPSIEHVDNIYTTVKQ-YHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYPTPYHDINLNV 179 (335)
Q Consensus 104 ~~gkPvilS---tG~~~tl~Ei~~Av~~i~~-g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~s~YP~~~~~~nL~~ 179 (335)
+.|..|.++ .+.+ +++.+...++.+.. |-. .|-+|+.. .+=+|.+-. ..
T Consensus 125 ~~G~~v~~~~~~~~~~-~~~~~~~~~~~~~~~G~~--~i~l~DT~----------------------G~~~P~~v~--~l 177 (268)
T cd07940 125 SHGLDVEFSAEDATRT-DLDFLIEVVEAAIEAGAT--TINIPDTV----------------------GYLTPEEFG--EL 177 (268)
T ss_pred HcCCeEEEeeecCCCC-CHHHHHHHHHHHHHcCCC--EEEECCCC----------------------CCCCHHHHH--HH
Confidence 557666654 2334 77777777777665 544 45555542 112222222 24
Q ss_pred HHHHHHHCCC--CCeecCCCCC-C--hHHHHHHHHcCCcEEEe
Q psy17999 180 IHTLRSRYPD--IPIGYSGHEN-G--VHVCYAAVAMGAQIIEK 217 (335)
Q Consensus 180 i~~L~~~fp~--~pVG~SdHt~-g--~~~~~aAvalGA~vIEk 217 (335)
+..|++.+|+ +++||-.|.. | ..-+++|+..||++|+-
T Consensus 178 v~~l~~~~~~~~i~l~~H~Hn~~GlA~An~laAi~aG~~~iD~ 220 (268)
T cd07940 178 IKKLKENVPNIKVPISVHCHNDLGLAVANSLAAVEAGARQVEC 220 (268)
T ss_pred HHHHHHhCCCCceeEEEEecCCcchHHHHHHHHHHhCCCEEEE
Confidence 7788999976 8999988864 4 55678999999999983
No 55
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=95.90 E-value=0.16 Score=52.19 Aligned_cols=79 Identities=13% Similarity=0.247 Sum_probs=65.7
Q ss_pred cCCHHHHHHHHHHHHHcCCceEeccCChhhHHHHHhCCCCEEEEcCCCCCCHH--------HHHHHHhcCCcEEEeCCCC
Q psy17999 45 EFSQEEYVMLQQCADQVDIMFTASAMDQVSFDFLLSANVPFIKIGSGDSNNIP--------LIKYAASKQKPLIISTGML 116 (335)
Q Consensus 45 el~~e~~~~L~~~~~~~Gi~f~stpfd~~svd~l~~l~v~~~KIaS~d~~n~~--------LL~~~a~~gkPvilStG~~ 116 (335)
-|+.+++.+|.++|+++|+..+.++.+++.++...+.+.+++=|-.+|+..+. |+..+- .+..+|-..|..
T Consensus 142 ~L~~~~l~~l~~~a~~lGl~~lvEvh~~~El~~al~~~a~iiGiNnRdL~t~~vd~~~~~~l~~~ip-~~~~~vseSGI~ 220 (454)
T PRK09427 142 VLDDEQYRQLAAVAHSLNMGVLTEVSNEEELERAIALGAKVIGINNRNLRDLSIDLNRTRELAPLIP-ADVIVISESGIY 220 (454)
T ss_pred hCCHHHHHHHHHHHHHcCCcEEEEECCHHHHHHHHhCCCCEEEEeCCCCccceECHHHHHHHHhhCC-CCcEEEEeCCCC
Confidence 37889999999999999999999999999999999999999999999998653 222222 244555559999
Q ss_pred CCHHHHHHH
Q psy17999 117 PSIEHVDNI 125 (335)
Q Consensus 117 ~tl~Ei~~A 125 (335)
|.+|+...
T Consensus 221 -t~~d~~~~ 228 (454)
T PRK09427 221 -THAQVREL 228 (454)
T ss_pred -CHHHHHHH
Confidence 99999874
No 56
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=95.87 E-value=0.15 Score=50.77 Aligned_cols=81 Identities=17% Similarity=0.150 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHcCCceEeccC--Ch-----h-----------hHHHHHhCCCCEEEEcCCCC-----------------
Q psy17999 49 EEYVMLQQCADQVDIMFTASAM--DQ-----V-----------SFDFLLSANVPFIKIGSGDS----------------- 93 (335)
Q Consensus 49 e~~~~L~~~~~~~Gi~f~stpf--d~-----~-----------svd~l~~l~v~~~KIaS~d~----------------- 93 (335)
+++.++.+.|+++|++++.-.+ .+ . .+....++|.|++|+.-..-
T Consensus 179 ~~l~~i~~ea~~~GlPlv~~~YpRG~~i~~~~d~~~~~d~Ia~AaRiaaELGADIVKv~yp~~~~~f~~v~~~~~~~~~~ 258 (348)
T PRK09250 179 EEISEAFEEAHELGLATVLWSYLRNSAFKKDGDYHTAADLTGQANHLAATIGADIIKQKLPTNNGGYKAINFGKTDDRVY 258 (348)
T ss_pred HHHHHHHHHHHHhCCCEEEEecccCcccCCcccccccHHHHHHHHHHHHHHcCCEEEecCCCChhhHHHhhccccccccc
Confidence 6789999999999999987322 11 1 13455689999999986521
Q ss_pred ------CCHHHHHHH-Hhc---CCcEEEeCCCCCCHHHHHHHHHHH
Q psy17999 94 ------NNIPLIKYA-ASK---QKPLIISTGMLPSIEHVDNIYTTV 129 (335)
Q Consensus 94 ------~n~~LL~~~-a~~---gkPvilStG~~~tl~Ei~~Av~~i 129 (335)
+...+++++ +.. ..||+++=|...+.+|+.+.+.-.
T Consensus 259 ~~~~~~~~~~~~~~~V~ac~ag~vpVviAGG~k~~~~e~L~~v~~a 304 (348)
T PRK09250 259 SKLTSDHPIDLVRYQVANCYMGRRGLINSGGASKGEDDLLDAVRTA 304 (348)
T ss_pred ccccccchHHHHHHHHHhhccCCceEEEeCCCCCCHHHHHHHHHHH
Confidence 233344443 333 689999999665667777766655
No 57
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=95.87 E-value=0.1 Score=47.68 Aligned_cols=82 Identities=16% Similarity=0.201 Sum_probs=69.5
Q ss_pred CCHHHHHHHHHHHHHcCCceEeccCChhhHHHHHhCCCCEEEEcCCCC----CCHHHHHHHHhc---CCcEEEeCCCCCC
Q psy17999 46 FSQEEYVMLQQCADQVDIMFTASAMDQVSFDFLLSANVPFIKIGSGDS----NNIPLIKYAASK---QKPLIISTGMLPS 118 (335)
Q Consensus 46 l~~e~~~~L~~~~~~~Gi~f~stpfd~~svd~l~~l~v~~~KIaS~d~----~n~~LL~~~a~~---gkPvilStG~~~t 118 (335)
++.++...+.+++...|+..+..+.+.+.+..+.+++++++=+.+.+. .++.+++++.+. +.|||.+.|.+ +
T Consensus 105 ~~~~~~~~~~~~~~~~g~~~~v~v~~~~e~~~~~~~g~~~i~~t~~~~~~~~~~~~~~~~l~~~~~~~~pvia~gGI~-s 183 (217)
T cd00331 105 LDDEQLKELYELARELGMEVLVEVHDEEELERALALGAKIIGINNRDLKTFEVDLNTTERLAPLIPKDVILVSESGIS-T 183 (217)
T ss_pred CCHHHHHHHHHHHHHcCCeEEEEECCHHHHHHHHHcCCCEEEEeCCCccccCcCHHHHHHHHHhCCCCCEEEEEcCCC-C
Confidence 566899999999999999999888899989999999999997776554 456778888764 68999999999 9
Q ss_pred HHHHHHHHHH
Q psy17999 119 IEHVDNIYTT 128 (335)
Q Consensus 119 l~Ei~~Av~~ 128 (335)
.+++.++.+.
T Consensus 184 ~edi~~~~~~ 193 (217)
T cd00331 184 PEDVKRLAEA 193 (217)
T ss_pred HHHHHHHHHc
Confidence 9999987553
No 58
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=95.86 E-value=0.097 Score=49.52 Aligned_cols=145 Identities=19% Similarity=0.170 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHHHcCCceEe--ccCChhhHHHHHhCCCCEEEEcCCCCCCH----HHHHHHHhcCCcEEEe---CCCCCC
Q psy17999 48 QEEYVMLQQCADQVDIMFTA--SAMDQVSFDFLLSANVPFIKIGSGDSNNI----PLIKYAASKQKPLIIS---TGMLPS 118 (335)
Q Consensus 48 ~e~~~~L~~~~~~~Gi~f~s--tpfd~~svd~l~~l~v~~~KIaS~d~~n~----~LL~~~a~~gkPvilS---tG~~~t 118 (335)
++..+.+.+......+..++ ..-..+.++.+.+.+++.+.|.... ++. +.++++.+.|+.+.++ .+.. +
T Consensus 62 ~e~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~g~~~iri~~~~-s~~~~~~~~i~~ak~~G~~v~~~~~~~~~~-~ 139 (263)
T cd07943 62 EEYLEAAAEALKQAKLGVLLLPGIGTVDDLKMAADLGVDVVRVATHC-TEADVSEQHIGAARKLGMDVVGFLMMSHMA-S 139 (263)
T ss_pred HHHHHHHHHhccCCEEEEEecCCccCHHHHHHHHHcCCCEEEEEech-hhHHHHHHHHHHHHHCCCeEEEEEEeccCC-C
Confidence 34444454433323332232 1446788999899999998875432 232 3444444568776555 3455 8
Q ss_pred HHHHHHHHHHHHh-cCCCCceeecccCCCCCCCCcccccCceEEeeecCCCCCCccCCCchHHHHHHHHCCCCCeecCCC
Q psy17999 119 IEHVDNIYTTVKQ-YHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYPTPYHDINLNVIHTLRSRYPDIPIGYSGH 197 (335)
Q Consensus 119 l~Ei~~Av~~i~~-g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~s~YP~~~~~~nL~~i~~L~~~fp~~pVG~SdH 197 (335)
.+++.+.++.+.. |-. .|-+|++- ..=+|..-. ..+..+++.+|.+|+||=.|
T Consensus 140 ~~~~~~~~~~~~~~G~d--~i~l~DT~----------------------G~~~P~~v~--~lv~~l~~~~~~~~l~~H~H 193 (263)
T cd07943 140 PEELAEQAKLMESYGAD--CVYVTDSA----------------------GAMLPDDVR--ERVRALREALDPTPVGFHGH 193 (263)
T ss_pred HHHHHHHHHHHHHcCCC--EEEEcCCC----------------------CCcCHHHHH--HHHHHHHHhCCCceEEEEec
Confidence 9999999988877 644 44444442 111222222 23677888895459999888
Q ss_pred CC-C--hHHHHHHHHcCCcEEEeccCCC
Q psy17999 198 EN-G--VHVCYAAVAMGAQIIEKHFTLD 222 (335)
Q Consensus 198 t~-g--~~~~~aAvalGA~vIEkH~tld 222 (335)
.. | ..-+++|+..||++|+ -|+.
T Consensus 194 n~~GlA~AN~laAi~aGa~~vd--~s~~ 219 (263)
T cd07943 194 NNLGLAVANSLAAVEAGATRID--GSLA 219 (263)
T ss_pred CCcchHHHHHHHHHHhCCCEEE--eecc
Confidence 64 4 5567899999999998 4544
No 59
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=95.85 E-value=0.32 Score=44.95 Aligned_cols=136 Identities=14% Similarity=0.170 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHHcCCceEe--ccCChhhHHHHHhCCCCEEEEcCCCCCCHHHHHHHHhc-C-CcEEEeC----------C
Q psy17999 49 EEYVMLQQCADQVDIMFTA--SAMDQVSFDFLLSANVPFIKIGSGDSNNIPLIKYAASK-Q-KPLIIST----------G 114 (335)
Q Consensus 49 e~~~~L~~~~~~~Gi~f~s--tpfd~~svd~l~~l~v~~~KIaS~d~~n~~LL~~~a~~-g-kPvilSt----------G 114 (335)
+.+..|.+.|++.+++++. -+-+.+.++.+.+.|++.+-|++..+.+..+++++.+. + .-+++|. |
T Consensus 63 ~~~~~i~~i~~~~~~~l~v~GGi~~~~~~~~~~~~Ga~~v~iGs~~~~~~~~~~~i~~~~g~~~i~~sid~~~~~v~~~g 142 (241)
T PRK13585 63 KNAEAIEKIIEAVGVPVQLGGGIRSAEDAASLLDLGVDRVILGTAAVENPEIVRELSEEFGSERVMVSLDAKDGEVVIKG 142 (241)
T ss_pred ccHHHHHHHHHHcCCcEEEcCCcCCHHHHHHHHHcCCCEEEEChHHhhChHHHHHHHHHhCCCcEEEEEEeeCCEEEECC
Confidence 5578999999999998887 46788999999999999999999999999999998886 3 3454442 2
Q ss_pred CC----CCHHHHHHHHHHHHh-cCCCCceeecccCCCCCCCCcccccCceEEeeecCCCCCCccCCCchHHHHHHHHCCC
Q psy17999 115 ML----PSIEHVDNIYTTVKQ-YHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYPTPYHDINLNVIHTLRSRYPD 189 (335)
Q Consensus 115 ~~----~tl~Ei~~Av~~i~~-g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~s~YP~~~~~~nL~~i~~L~~~fp~ 189 (335)
.. .+..|+.+.+ .. |.. .+ ++|-++.=. .....|+..+..+++.. +
T Consensus 143 ~~~~~~~~~~~~~~~~---~~~G~~-----------------------~i-~~~~~~~~g-~~~g~~~~~i~~i~~~~-~ 193 (241)
T PRK13585 143 WTEKTGYTPVEAAKRF---EELGAG-----------------------SI-LFTNVDVEG-LLEGVNTEPVKELVDSV-D 193 (241)
T ss_pred CcccCCCCHHHHHHHH---HHcCCC-----------------------EE-EEEeecCCC-CcCCCCHHHHHHHHHhC-C
Confidence 11 0333333332 22 322 33 344332111 11447888999999988 8
Q ss_pred CCeecCCCCCChHHHHHHHHcCCc
Q psy17999 190 IPIGYSGHENGVHVCYAAVAMGAQ 213 (335)
Q Consensus 190 ~pVG~SdHt~g~~~~~aAvalGA~ 213 (335)
+||-.++.-....-......+||+
T Consensus 194 iPvia~GGI~~~~di~~~~~~Ga~ 217 (241)
T PRK13585 194 IPVIASGGVTTLDDLRALKEAGAA 217 (241)
T ss_pred CCEEEeCCCCCHHHHHHHHHcCCC
Confidence 999887766654444446778887
No 60
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=95.85 E-value=0.48 Score=43.63 Aligned_cols=124 Identities=17% Similarity=0.189 Sum_probs=89.1
Q ss_pred CHHHHHHHHHHHHHcCCce---EeccCChhhHHHHHhCCCCEEEEcCCCCCCHHHHHHHHhcCCcEEEeCCCCCCHHHHH
Q psy17999 47 SQEEYVMLQQCADQVDIMF---TASAMDQVSFDFLLSANVPFIKIGSGDSNNIPLIKYAASKQKPLIISTGMLPSIEHVD 123 (335)
Q Consensus 47 ~~e~~~~L~~~~~~~Gi~f---~stpfd~~svd~l~~l~v~~~KIaS~d~~n~~LL~~~a~~gkPvilStG~~~tl~Ei~ 123 (335)
+.+....|.+.+++++-.. .-|+.+.+.++.+.+.|.+|+-.+. .|.++++++...+.|++.+ .. |++|+.
T Consensus 45 ~~~~~~~i~~l~~~~~~~~~iGaGTV~~~~~~~~a~~aGA~fivsp~---~~~~v~~~~~~~~~~~~~G--~~-t~~E~~ 118 (206)
T PRK09140 45 SPDPFDSIAALVKALGDRALIGAGTVLSPEQVDRLADAGGRLIVTPN---TDPEVIRRAVALGMVVMPG--VA-TPTEAF 118 (206)
T ss_pred CccHHHHHHHHHHHcCCCcEEeEEecCCHHHHHHHHHcCCCEEECCC---CCHHHHHHHHHCCCcEEcc--cC-CHHHHH
Confidence 3355667888888887432 2479999999999999999998876 5679999999888888887 45 899999
Q ss_pred HHHHHHHhcCCCCceeecccCCCCCCCCcccccCceEEeeecCCCCCCccCCCchHHHHHHHHCC-CCCeecCCCCCChH
Q psy17999 124 NIYTTVKQYHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYPTPYHDINLNVIHTLRSRYP-DIPIGYSGHENGVH 202 (335)
Q Consensus 124 ~Av~~i~~g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~s~YP~~~~~~nL~~i~~L~~~fp-~~pVG~SdHt~g~~ 202 (335)
.|.+. |. +++-+ ||+. .+.+..+..+++.+| ++|+.=.+ |+.
T Consensus 119 ~A~~~---Ga------------------------d~vk~-----Fpa~--~~G~~~l~~l~~~~~~~ipvvaiG---GI~ 161 (206)
T PRK09140 119 AALRA---GA------------------------QALKL-----FPAS--QLGPAGIKALRAVLPPDVPVFAVG---GVT 161 (206)
T ss_pred HHHHc---CC------------------------CEEEE-----CCCC--CCCHHHHHHHHhhcCCCCeEEEEC---CCC
Confidence 88752 32 33322 7864 377889999999996 68874322 332
Q ss_pred H--HHHHHHcCCc
Q psy17999 203 V--CYAAVAMGAQ 213 (335)
Q Consensus 203 ~--~~aAvalGA~ 213 (335)
. ...-.+.||+
T Consensus 162 ~~n~~~~~~aGa~ 174 (206)
T PRK09140 162 PENLAPYLAAGAA 174 (206)
T ss_pred HHHHHHHHHCCCe
Confidence 2 2233456776
No 61
>PRK12786 flgA flagellar basal body P-ring biosynthesis protein FlgA; Reviewed
Probab=95.81 E-value=0.0042 Score=61.42 Aligned_cols=61 Identities=15% Similarity=0.201 Sum_probs=50.5
Q ss_pred ceEEEEeecCCCCcccccCCcEEeeCCCCCC---CcchHHHHhcchhhcccCCCCcccCCCCCC
Q psy17999 272 GKCIVSSCDIQAGTVLQEFHVCIKVAEPKGI---CGTRYASVMGRKVNRDIRRDESIQDIDLDP 332 (335)
Q Consensus 272 rrsl~a~~di~~G~~l~~~dl~~kr~~~~Gi---~p~~~~~viG~~~~~di~~~~~i~~~~l~~ 332 (335)
.+-++++++|.+|++|+.+||.+.+.+-..+ ...+.+.++|++++|.|.+|++|+.+||+.
T Consensus 192 ~~v~Va~r~i~rGe~I~~~Dl~~~~~~~~~l~~~~~~d~~~vvG~~arR~l~aGq~l~~~~l~~ 255 (338)
T PRK12786 192 VEAPVLARAVGRGEVIKSSDVVWERRPKARVSGDDIASREDLVGMQARRALRAGQPLRGADLAK 255 (338)
T ss_pred EEEEEEccccCCCCCcCHHHeEEEEEehhhcCccccCCHHHhccceEEeecCCCCeeCHHHcCC
Confidence 3567999999999999999999976542222 345789999999999999999999888863
No 62
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=95.81 E-value=0.26 Score=47.44 Aligned_cols=145 Identities=19% Similarity=0.209 Sum_probs=91.3
Q ss_pred CCHHHHHHHHHHHHHc-------CCceEeccCChhhHHHHHhCCCCEEEEcC--CCC--------CCHHH-------HHH
Q psy17999 46 FSQEEYVMLQQCADQV-------DIMFTASAMDQVSFDFLLSANVPFIKIGS--GDS--------NNIPL-------IKY 101 (335)
Q Consensus 46 l~~e~~~~L~~~~~~~-------Gi~f~stpfd~~svd~l~~l~v~~~KIaS--~d~--------~n~~L-------L~~ 101 (335)
.+.++++.+.+.++.. ++.+++-+=...+++.+.+.|++.+.|.- ++. +--.. +++
T Consensus 44 ~s~~e~~av~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~A~~~g~~~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~ 123 (280)
T cd07945 44 VSEGEFEAVQKIIDWAAEEGLLDRIEVLGFVDGDKSVDWIKSAGAKVLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEY 123 (280)
T ss_pred CCHHHHHHHHHHHHHhhhhccccCcEEEEecCcHHHHHHHHHCCCCEEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 3665555555555422 45554333335678888888888876653 211 21222 455
Q ss_pred HHhcCCcEEEeCC------CCCCHHHHHHHHHHHHh-cCCCCceeecccCCCCCCCCcccccCceEEeeecCCCCCCccC
Q psy17999 102 AASKQKPLIISTG------MLPSIEHVDNIYTTVKQ-YHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYPTPYHD 174 (335)
Q Consensus 102 ~a~~gkPvilStG------~~~tl~Ei~~Av~~i~~-g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~s~YP~~~~~ 174 (335)
+.+.|..|.++.- .. +++.+.+.++.+.. |.. .|-+|+.. .+=+|..-
T Consensus 124 a~~~G~~v~~~~~d~~~~~r~-~~~~~~~~~~~~~~~G~~--~i~l~DT~----------------------G~~~P~~v 178 (280)
T cd07945 124 AIKNGIEVNIYLEDWSNGMRD-SPDYVFQLVDFLSDLPIK--RIMLPDTL----------------------GILSPFET 178 (280)
T ss_pred HHhCCCEEEEEEEeCCCCCcC-CHHHHHHHHHHHHHcCCC--EEEecCCC----------------------CCCCHHHH
Confidence 5556777666644 23 78888888887776 654 55555542 23333332
Q ss_pred CCchHHHHHHHHCCCCCeecCCCCC-C--hHHHHHHHHcCCcEEEe
Q psy17999 175 INLNVIHTLRSRYPDIPIGYSGHEN-G--VHVCYAAVAMGAQIIEK 217 (335)
Q Consensus 175 ~nL~~i~~L~~~fp~~pVG~SdHt~-g--~~~~~aAvalGA~vIEk 217 (335)
. ..+..+++++|++++++-.|.. | ..-+++|+..||+.|+-
T Consensus 179 ~--~l~~~l~~~~~~~~i~~H~Hnd~Gla~AN~laA~~aGa~~vd~ 222 (280)
T cd07945 179 Y--TYISDMVKRYPNLHFDFHAHNDYDLAVANVLAAVKAGIKGLHT 222 (280)
T ss_pred H--HHHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHhCCCEEEE
Confidence 2 3467788889889999988864 4 55678999999999984
No 63
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=95.75 E-value=0.056 Score=51.55 Aligned_cols=79 Identities=16% Similarity=0.201 Sum_probs=62.4
Q ss_pred CCHHHHHHHHHHHHHcCCceEeccCChhhHHHHHhCCCCEEEEcCCCCCCHHHH----HHHHh---cCCcEEEeCCCCCC
Q psy17999 46 FSQEEYVMLQQCADQVDIMFTASAMDQVSFDFLLSANVPFIKIGSGDSNNIPLI----KYAAS---KQKPLIISTGMLPS 118 (335)
Q Consensus 46 l~~e~~~~L~~~~~~~Gi~f~stpfd~~svd~l~~l~v~~~KIaS~d~~n~~LL----~~~a~---~gkPvilStG~~~t 118 (335)
|+.+++.+|.++|+++|+..+.++.+++.++.+.++|.+++=|-.+|+..+..= .+++. .+..+|-..|.. +
T Consensus 142 L~~~~l~~l~~~a~~lGle~lVEVh~~~El~~al~~~a~iiGINnRdL~tf~vd~~~~~~l~~~ip~~~~~iseSGI~-~ 220 (254)
T PF00218_consen 142 LSDDQLEELLELAHSLGLEALVEVHNEEELERALEAGADIIGINNRDLKTFEVDLNRTEELAPLIPKDVIVISESGIK-T 220 (254)
T ss_dssp SGHHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTT-SEEEEESBCTTTCCBHTHHHHHHHCHSHTTSEEEEESS-S-S
T ss_pred CCHHHHHHHHHHHHHcCCCeEEEECCHHHHHHHHHcCCCEEEEeCccccCcccChHHHHHHHhhCccceeEEeecCCC-C
Confidence 788999999999999999999999999999999999999999999999876542 22222 234455558888 9
Q ss_pred HHHHHHH
Q psy17999 119 IEHVDNI 125 (335)
Q Consensus 119 l~Ei~~A 125 (335)
.+++...
T Consensus 221 ~~d~~~l 227 (254)
T PF00218_consen 221 PEDARRL 227 (254)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998864
No 64
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=95.71 E-value=0.46 Score=43.78 Aligned_cols=142 Identities=17% Similarity=0.174 Sum_probs=94.2
Q ss_pred CHHHHHHHHHHHHHcCCceEe--ccCChhhHHHHHhCCCCEEEEcCCCCCCHHHHHHHHhc-CCc-EEEeCCCCC-----
Q psy17999 47 SQEEYVMLQQCADQVDIMFTA--SAMDQVSFDFLLSANVPFIKIGSGDSNNIPLIKYAASK-QKP-LIISTGMLP----- 117 (335)
Q Consensus 47 ~~e~~~~L~~~~~~~Gi~f~s--tpfd~~svd~l~~l~v~~~KIaS~d~~n~~LL~~~a~~-gkP-vilStG~~~----- 117 (335)
....+..+++.+++.+++++. -+-+.+.++.+.+.|++.+-+++..+.|..+++++.+. +.. +++|.-...
T Consensus 59 ~~~n~~~~~~i~~~~~~pv~~~ggi~~~~d~~~~~~~G~~~vilg~~~l~~~~~~~~~~~~~~~~~i~vsld~~~~~~~~ 138 (232)
T TIGR03572 59 REPLFELISNLAEECFMPLTVGGGIRSLEDAKKLLSLGADKVSINTAALENPDLIEEAARRFGSQCVVVSIDVKKELDGS 138 (232)
T ss_pred CCCCHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHcCCCEEEEChhHhcCHHHHHHHHHHcCCceEEEEEEeccCCCCC
Confidence 344577788888888877666 78889999888889999999999999999999998874 444 555522110
Q ss_pred ------------CHHHHHHHHHHHHhcCCCCceeecccCCCCCCCCcccccCceEEeeecCCCCCCccCCCchHHHHHHH
Q psy17999 118 ------------SIEHVDNIYTTVKQYHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYPTPYHDINLNVIHTLRS 185 (335)
Q Consensus 118 ------------tl~Ei~~Av~~i~~g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~s~YP~~~~~~nL~~i~~L~~ 185 (335)
+..+....++.+..... +..++|..+.-.+. +-.|+..+..+++
T Consensus 139 ~~~v~~~~~~~~~~~~~~~~~~~~~~~G~-----------------------d~i~i~~i~~~g~~-~g~~~~~~~~i~~ 194 (232)
T TIGR03572 139 DYKVYSDNGRRATGRDPVEWAREAEQLGA-----------------------GEILLNSIDRDGTM-KGYDLELIKTVSD 194 (232)
T ss_pred cEEEEECCCcccCCCCHHHHHHHHHHcCC-----------------------CEEEEeCCCccCCc-CCCCHHHHHHHHh
Confidence 11112233333333112 44556655544332 4478999999999
Q ss_pred HCCCCCeecCCCCCChHH-HHHHHHcCCc
Q psy17999 186 RYPDIPIGYSGHENGVHV-CYAAVAMGAQ 213 (335)
Q Consensus 186 ~fp~~pVG~SdHt~g~~~-~~aAvalGA~ 213 (335)
.. ++||..++--....- ..+....||+
T Consensus 195 ~~-~ipvia~GGi~s~~di~~~l~~~gad 222 (232)
T TIGR03572 195 AV-SIPVIALGGAGSLDDLVEVALEAGAS 222 (232)
T ss_pred hC-CCCEEEECCCCCHHHHHHHHHHcCCC
Confidence 87 899988765554333 3335567887
No 65
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=95.70 E-value=0.23 Score=47.67 Aligned_cols=85 Identities=14% Similarity=0.075 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHcCCceEecc------------CChhhHH----HHHhCCCCEEEEcCCCCCCHHHHHHHHhcCCcEEEe
Q psy17999 49 EEYVMLQQCADQVDIMFTASA------------MDQVSFD----FLLSANVPFIKIGSGDSNNIPLIKYAASKQKPLIIS 112 (335)
Q Consensus 49 e~~~~L~~~~~~~Gi~f~stp------------fd~~svd----~l~~l~v~~~KIaS~d~~n~~LL~~~a~~gkPvilS 112 (335)
+++.++++.|+++|++++.-+ +|.+-+- ...++|.|++|+.-...+ -.+=+.+...+.||+++
T Consensus 130 ~~~~~v~~~a~~~Gmp~v~~~YpRg~~~~~~~~~d~~~v~~aaRlaaelGADIiK~~ytg~~-e~F~~vv~~~~vpVvia 208 (265)
T COG1830 130 ENISQVVEDAHELGMPLVAWAYPRGPAIKDEYHRDADLVGYAARLAAELGADIIKTKYTGDP-ESFRRVVAACGVPVVIA 208 (265)
T ss_pred HHHHHHHHHHHHcCCceEEEEeccCCcccccccccHHHHHHHHHHHHHhcCCeEeecCCCCh-HHHHHHHHhCCCCEEEe
Confidence 678999999999999999833 3444443 556799999999876644 33444555568999999
Q ss_pred CCCCC-CHHHHHHHHHHHH-hcCC
Q psy17999 113 TGMLP-SIEHVDNIYTTVK-QYHS 134 (335)
Q Consensus 113 tG~~~-tl~Ei~~Av~~i~-~g~~ 134 (335)
=|... +..|.++.+.-.- +|..
T Consensus 209 GG~k~~~~~~~l~~~~~ai~aGa~ 232 (265)
T COG1830 209 GGPKTETEREFLEMVTAAIEAGAM 232 (265)
T ss_pred CCCCCCChHHHHHHHHHHHHccCc
Confidence 99774 7788777666443 3543
No 66
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=95.62 E-value=0.068 Score=50.98 Aligned_cols=82 Identities=17% Similarity=0.208 Sum_probs=69.2
Q ss_pred cCCHHHHHHHHHHHHHcCCceEeccCChhhHHHHHhCCCCEEEEcCCCCCCHHHH----HHHHh---cCCcEEEeCCCCC
Q psy17999 45 EFSQEEYVMLQQCADQVDIMFTASAMDQVSFDFLLSANVPFIKIGSGDSNNIPLI----KYAAS---KQKPLIISTGMLP 117 (335)
Q Consensus 45 el~~e~~~~L~~~~~~~Gi~f~stpfd~~svd~l~~l~v~~~KIaS~d~~n~~LL----~~~a~---~gkPvilStG~~~ 117 (335)
-|+.+++.+|.++|+++|+.++.++.|.+.++.+.++|.++|=|-.+|+..+..- ++++. .+.-+|--+|.+
T Consensus 139 ~L~~~~l~el~~~A~~LGm~~LVEVh~~eEl~rAl~~ga~iIGINnRdL~tf~vdl~~t~~la~~~p~~~~~IsESGI~- 217 (254)
T COG0134 139 ALDDEQLEELVDRAHELGMEVLVEVHNEEELERALKLGAKIIGINNRDLTTLEVDLETTEKLAPLIPKDVILISESGIS- 217 (254)
T ss_pred hcCHHHHHHHHHHHHHcCCeeEEEECCHHHHHHHHhCCCCEEEEeCCCcchheecHHHHHHHHhhCCCCcEEEecCCCC-
Confidence 4899999999999999999999999999999999999999999999999876543 33333 245567779999
Q ss_pred CHHHHHHHHH
Q psy17999 118 SIEHVDNIYT 127 (335)
Q Consensus 118 tl~Ei~~Av~ 127 (335)
|.+|+.....
T Consensus 218 ~~~dv~~l~~ 227 (254)
T COG0134 218 TPEDVRRLAK 227 (254)
T ss_pred CHHHHHHHHH
Confidence 9999987644
No 67
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=95.61 E-value=0.72 Score=42.32 Aligned_cols=136 Identities=17% Similarity=0.212 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHcCCceEe--ccCChhhHHHHHhCCCCEEEEcCCCCCCHHHHHHHHhc-C-CcEEEe----------CCC
Q psy17999 50 EYVMLQQCADQVDIMFTA--SAMDQVSFDFLLSANVPFIKIGSGDSNNIPLIKYAASK-Q-KPLIIS----------TGM 115 (335)
Q Consensus 50 ~~~~L~~~~~~~Gi~f~s--tpfd~~svd~l~~l~v~~~KIaS~d~~n~~LL~~~a~~-g-kPvilS----------tG~ 115 (335)
.+..+.+.++..++++.. -+-+.+.++.+.+.|++.+-++|.-+.|..+++++++. | .+|++| .|.
T Consensus 60 ~~~~i~~i~~~~~~pi~~ggGI~~~ed~~~~~~~Ga~~vvlgs~~l~d~~~~~~~~~~~g~~~i~~sid~~~~~v~~~g~ 139 (230)
T TIGR00007 60 NLPVIKKIVRETGVPVQVGGGIRSLEDVEKLLDLGVDRVIIGTAAVENPDLVKELLKEYGPERIVVSLDARGGEVAVKGW 139 (230)
T ss_pred cHHHHHHHHHhcCCCEEEeCCcCCHHHHHHHHHcCCCEEEEChHHhhCHHHHHHHHHHhCCCcEEEEEEEECCEEEEcCC
Confidence 456777777787887777 55688889999999999999999999999999988875 4 567765 221
Q ss_pred C----CCHHHHHHHHHHHHhcCCCCceeecccCCCCCCCCcccccCceEEeeecCCCCCCccCCCchHHHHHHHHCCCCC
Q psy17999 116 L----PSIEHVDNIYTTVKQYHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYPTPYHDINLNVIHTLRSRYPDIP 191 (335)
Q Consensus 116 ~----~tl~Ei~~Av~~i~~g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~s~YP~~~~~~nL~~i~~L~~~fp~~p 191 (335)
. .++.++. +.+.+.+. +-.++|..+.=-+ ....|+..+..+++.. ++|
T Consensus 140 ~~~~~~~~~~~~---~~~~~~g~-----------------------~~ii~~~~~~~g~-~~g~~~~~i~~i~~~~-~ip 191 (230)
T TIGR00007 140 LEKSEVSLEELA---KRLEELGL-----------------------EGIIYTDISRDGT-LSGPNFELTKELVKAV-NVP 191 (230)
T ss_pred cccCCCCHHHHH---HHHHhCCC-----------------------CEEEEEeecCCCC-cCCCCHHHHHHHHHhC-CCC
Confidence 1 1222322 22333111 3344454432111 1347899999999886 899
Q ss_pred eecCCCCCChHHHHHHHHcCCc
Q psy17999 192 IGYSGHENGVHVCYAAVAMGAQ 213 (335)
Q Consensus 192 VG~SdHt~g~~~~~aAvalGA~ 213 (335)
|..++=-....-...+...||+
T Consensus 192 via~GGi~~~~di~~~~~~Gad 213 (230)
T TIGR00007 192 VIASGGVSSIDDLIALKKLGVY 213 (230)
T ss_pred EEEeCCCCCHHHHHHHHHCCCC
Confidence 9776644443333445568887
No 68
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=95.58 E-value=0.53 Score=44.09 Aligned_cols=139 Identities=14% Similarity=0.150 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHcCCceEe--ccCChhhHHHHHhCCCCEEEEcCCCCCCHHHHHHHHhc-CCcEEEeC----C-----CC-
Q psy17999 50 EYVMLQQCADQVDIMFTA--SAMDQVSFDFLLSANVPFIKIGSGDSNNIPLIKYAASK-QKPLIIST----G-----ML- 116 (335)
Q Consensus 50 ~~~~L~~~~~~~Gi~f~s--tpfd~~svd~l~~l~v~~~KIaS~d~~n~~LL~~~a~~-gkPvilSt----G-----~~- 116 (335)
.+..+.+.++..++++.. -.-+.++++.+.++|++.+-++|.-++|.++++++++. +.-+++|. | ..
T Consensus 63 n~~~i~~i~~~~~~pv~vgGGirs~edv~~~l~~Ga~kvviGs~~l~~p~l~~~i~~~~~~~i~vsld~~~~~v~~~Gw~ 142 (241)
T PRK14024 63 NRELLAEVVGKLDVKVELSGGIRDDESLEAALATGCARVNIGTAALENPEWCARVIAEHGDRVAVGLDVRGHTLAARGWT 142 (241)
T ss_pred cHHHHHHHHHHcCCCEEEcCCCCCHHHHHHHHHCCCCEEEECchHhCCHHHHHHHHHHhhhhEEEEEEEeccEeccCCee
Confidence 457778888888887765 67899999999999999999999999999999998864 43354431 1 11
Q ss_pred CCHHHHHHHHHHHHhcCCCCceeecccCCCCCCCCcccccCceEEeeecCCCCCCccCCCchHHHHHHHHCCCCCeecCC
Q psy17999 117 PSIEHVDNIYTTVKQYHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYPTPYHDINLNVIHTLRSRYPDIPIGYSG 196 (335)
Q Consensus 117 ~tl~Ei~~Av~~i~~g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~s~YP~~~~~~nL~~i~~L~~~fp~~pVG~Sd 196 (335)
-+..+....++.+.+.+. .-.++|..+.--+-- -.|+..+..+++.. ++||-.|+
T Consensus 143 ~~~~~~~~~~~~l~~~G~-----------------------~~iiv~~~~~~g~~~-G~d~~~i~~i~~~~-~ipviasG 197 (241)
T PRK14024 143 RDGGDLWEVLERLDSAGC-----------------------SRYVVTDVTKDGTLT-GPNLELLREVCART-DAPVVASG 197 (241)
T ss_pred ecCccHHHHHHHHHhcCC-----------------------CEEEEEeecCCCCcc-CCCHHHHHHHHhhC-CCCEEEeC
Confidence 011122233333433112 455666665433322 35899999999987 89998888
Q ss_pred CCCChHHHHHHHH---cCCc
Q psy17999 197 HENGVHVCYAAVA---MGAQ 213 (335)
Q Consensus 197 Ht~g~~~~~aAva---lGA~ 213 (335)
.-....-...+.. .||+
T Consensus 198 Gi~s~~D~~~l~~~~~~Gvd 217 (241)
T PRK14024 198 GVSSLDDLRALAELVPLGVE 217 (241)
T ss_pred CCCCHHHHHHHhhhccCCcc
Confidence 7766544443332 4877
No 69
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=95.55 E-value=0.83 Score=40.97 Aligned_cols=125 Identities=16% Similarity=0.194 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHcCCceEeccCChhhHHHHHhCCCCEEEEcCCCCCCHHHHHHHHhcCCcEEEeCCCCCCHHHHHHHHHHH
Q psy17999 50 EYVMLQQCADQVDIMFTASAMDQVSFDFLLSANVPFIKIGSGDSNNIPLIKYAASKQKPLIISTGMLPSIEHVDNIYTTV 129 (335)
Q Consensus 50 ~~~~L~~~~~~~Gi~f~stpfd~~svd~l~~l~v~~~KIaS~d~~n~~LL~~~a~~gkPvilStG~~~tl~Ei~~Av~~i 129 (335)
..+.+.+.|+..|+.++.. +.++.+.++|++++-+++.+.. ...++++-..++.+-+++ . |.+|+..|.+.
T Consensus 53 ~~~~~~~~~~~~~~~l~~~----~~~~~a~~~gad~vh~~~~~~~-~~~~~~~~~~~~~~g~~~--~-t~~e~~~a~~~- 123 (212)
T PRK00043 53 LARALKELCRRYGVPLIVN----DRVDLALAVGADGVHLGQDDLP-VADARALLGPDAIIGLST--H-TLEEAAAALAA- 123 (212)
T ss_pred HHHHHHHHHHHhCCeEEEe----ChHHHHHHcCCCEEecCcccCC-HHHHHHHcCCCCEEEEeC--C-CHHHHHHHhHc-
Confidence 4566778888999988774 5678889999999888765432 333444433455555555 4 88888887642
Q ss_pred HhcCCCCceeecccCCCCCCCCcccccCceEEeeecCCCCCCc-----cCCCchHHHHHHHHCCCCCeec-CCCCCChHH
Q psy17999 130 KQYHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYPTPY-----HDINLNVIHTLRSRYPDIPIGY-SGHENGVHV 203 (335)
Q Consensus 130 ~~g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~s~YP~~~-----~~~nL~~i~~L~~~fp~~pVG~-SdHt~g~~~ 203 (335)
| . +++.++ .-+|+.. ....+..+..+++.++++||.- .+=+ ..-
T Consensus 124 --g-a-----------------------D~v~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~a~GGI~--~~~ 173 (212)
T PRK00043 124 --G-A-----------------------DYVGVG--PIFPTPTKKDAKAPQGLEGLREIRAAVGDIPIVAIGGIT--PEN 173 (212)
T ss_pred --C-C-----------------------CEEEEC--CccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEEECCcC--HHH
Confidence 2 2 455444 2345432 1234788999998885588832 2222 344
Q ss_pred HHHHHHcCCc
Q psy17999 204 CYAAVAMGAQ 213 (335)
Q Consensus 204 ~~aAvalGA~ 213 (335)
...+.+.||+
T Consensus 174 i~~~~~~Ga~ 183 (212)
T PRK00043 174 APEVLEAGAD 183 (212)
T ss_pred HHHHHHcCCC
Confidence 4567788998
No 70
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=95.51 E-value=0.27 Score=47.55 Aligned_cols=139 Identities=13% Similarity=0.186 Sum_probs=81.9
Q ss_pred HHHHHHHHHcCCceEeccCChhhHHHHHhCCCCEEEEcCC--CC--------C---CH----HHHHHHHhcCCcEE--Ee
Q psy17999 52 VMLQQCADQVDIMFTASAMDQVSFDFLLSANVPFIKIGSG--DS--------N---NI----PLIKYAASKQKPLI--IS 112 (335)
Q Consensus 52 ~~L~~~~~~~Gi~f~stpfd~~svd~l~~l~v~~~KIaS~--d~--------~---n~----~LL~~~a~~gkPvi--lS 112 (335)
..+....+..|..+.+-.-...+++...+.|++.+-+... +. + .+ ..++++-+.|..|. ++
T Consensus 62 e~~~~l~~~~~~~~~~l~~~~~~ie~A~~~g~~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~ 141 (287)
T PRK05692 62 EVMAGIQRRPGVTYAALTPNLKGLEAALAAGADEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVS 141 (287)
T ss_pred HHHHhhhccCCCeEEEEecCHHHHHHHHHcCCCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEE
Confidence 3333333334454444444677777777777776555422 11 0 11 23344444566654 22
Q ss_pred -------CCCCCCHHHHHHHHHHHHh-cCCCCceeecccCCCCCCCCcccccCceEEeeecCCCCCCccCCCchHHHHHH
Q psy17999 113 -------TGMLPSIEHVDNIYTTVKQ-YHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYPTPYHDINLNVIHTLR 184 (335)
Q Consensus 113 -------tG~~~tl~Ei~~Av~~i~~-g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~s~YP~~~~~~nL~~i~~L~ 184 (335)
.|.. +++.+.+.++.+.. |-. .|-+|+.. .+=+|.+-.+| +..|+
T Consensus 142 ~~~~~~~~~~~-~~~~~~~~~~~~~~~G~d--~i~l~DT~----------------------G~~~P~~v~~l--v~~l~ 194 (287)
T PRK05692 142 CVLGCPYEGEV-PPEAVADVAERLFALGCY--EISLGDTI----------------------GVGTPGQVRAV--LEAVL 194 (287)
T ss_pred EEecCCCCCCC-CHHHHHHHHHHHHHcCCc--EEEecccc----------------------CccCHHHHHHH--HHHHH
Confidence 2344 77777777777766 544 44455442 33344433333 77889
Q ss_pred HHCCCCCeecCCCCC-C--hHHHHHHHHcCCcEEEe
Q psy17999 185 SRYPDIPIGYSGHEN-G--VHVCYAAVAMGAQIIEK 217 (335)
Q Consensus 185 ~~fp~~pVG~SdHt~-g--~~~~~aAvalGA~vIEk 217 (335)
+.+|++|+++=.|.. | ..-+++|+..||+.|+-
T Consensus 195 ~~~~~~~i~~H~Hn~~Gla~AN~laA~~aG~~~id~ 230 (287)
T PRK05692 195 AEFPAERLAGHFHDTYGQALANIYASLEEGITVFDA 230 (287)
T ss_pred HhCCCCeEEEEecCCCCcHHHHHHHHHHhCCCEEEE
Confidence 999779999977753 3 66679999999999983
No 71
>PRK07094 biotin synthase; Provisional
Probab=95.45 E-value=2.6 Score=40.77 Aligned_cols=170 Identities=14% Similarity=0.104 Sum_probs=95.3
Q ss_pred CCHHHHHHHHHHHHH-cCCceEecc--CChhhHHHHHhCCCCEEEEcCCCCCCHHHHHH----------------HHhcC
Q psy17999 46 FSQEEYVMLQQCADQ-VDIMFTASA--MDQVSFDFLLSANVPFIKIGSGDSNNIPLIKY----------------AASKQ 106 (335)
Q Consensus 46 l~~e~~~~L~~~~~~-~Gi~f~stp--fd~~svd~l~~l~v~~~KIaS~d~~n~~LL~~----------------~a~~g 106 (335)
++.+++.++.+..++ .|+.+..++ .+++.++.|.+.|++.+-++ -+..|..+++. +-+.|
T Consensus 100 ~~~~~l~~l~~~i~~~~~l~i~~~~g~~~~e~l~~Lk~aG~~~v~~g-lEs~~~~~~~~i~~~~s~~~~~~~i~~l~~~G 178 (323)
T PRK07094 100 YTDEKIADIIKEIKKELDVAITLSLGERSYEEYKAWKEAGADRYLLR-HETADKELYAKLHPGMSFENRIACLKDLKELG 178 (323)
T ss_pred CCHHHHHHHHHHHHccCCceEEEecCCCCHHHHHHHHHcCCCEEEec-cccCCHHHHHHhCCCCCHHHHHHHHHHHHHcC
Confidence 456778888888877 577655444 56788888888888877642 33333333333 33345
Q ss_pred CcEE--EeCCC-CCCHHHHHHHHHHHHhcCCCCceeecccCCCCCCCCcccccCceEEeeecCCCC-CCccCC-------
Q psy17999 107 KPLI--ISTGM-LPSIEHVDNIYTTVKQYHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYP-TPYHDI------- 175 (335)
Q Consensus 107 kPvi--lStG~-~~tl~Ei~~Av~~i~~g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~s~YP-~~~~~~------- 175 (335)
.++- +-.|+ .-|.+++.+.++++++-+. +.+-+.-...+| ||..+.
T Consensus 179 i~v~~~~iiGlpget~ed~~~~l~~l~~l~~-----------------------~~v~~~~~~P~pgTpl~~~~~~~~~~ 235 (323)
T PRK07094 179 YEVGSGFMVGLPGQTLEDLADDILFLKELDL-----------------------DMIGIGPFIPHPDTPLKDEKGGSLEL 235 (323)
T ss_pred CeecceEEEECCCCCHHHHHHHHHHHHhCCC-----------------------CeeeeeccccCCCCCcccCCCCCHHH
Confidence 4421 12332 2377777777777765222 222222222333 333222
Q ss_pred CchHHHHHHHHCCCCCeecC-C-CCCChHHHHHHHHcCCcEEEeccCCCCCCC---CCCCCCCCCHHHH
Q psy17999 176 NLNVIHTLRSRYPDIPIGYS-G-HENGVHVCYAAVAMGAQIIEKHFTLDKSWK---GSDHASSLTPPEL 239 (335)
Q Consensus 176 nL~~i~~L~~~fp~~pVG~S-d-Ht~g~~~~~aAvalGA~vIEkH~tld~~~~---G~Dh~~Sl~p~el 239 (335)
.++.+..+|-.+|+..|--+ . -+.+......++..||+.|=--+|+..-.. =.|++..++-+..
T Consensus 236 ~~~~~a~~R~~lp~~~i~~~~~~~~~~~~~~~~~l~~Gan~~~~~~~~~~~~~~~~~y~~~~~~~~~~~ 304 (323)
T PRK07094 236 TLKVLALLRLLLPDANIPATTALGTLNPDGREKGLKAGANVVMPNLTPGEYRKLYSLYPGKICTGEEAA 304 (323)
T ss_pred HHHHHHHHHHhCcCCCCcccCCccccCchhHHHHHHcCCceecCCCCchhhCcccccCCCCCCCCccHH
Confidence 27888888988987555211 1 223444556899999996655577763222 2355555544433
No 72
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=95.44 E-value=1.6 Score=42.23 Aligned_cols=53 Identities=9% Similarity=0.052 Sum_probs=43.1
Q ss_pred HHcCCceEeccCChhhHHHHHhCCCCEEEEcCCCCCCHHHHHHHHhcCCcEEEe
Q psy17999 59 DQVDIMFTASAMDQVSFDFLLSANVPFIKIGSGDSNNIPLIKYAASKQKPLIIS 112 (335)
Q Consensus 59 ~~~Gi~f~stpfd~~svd~l~~l~v~~~KIaS~d~~n~~LL~~~a~~gkPvilS 112 (335)
+..++.+...-|..+-++.+.+.|++++==-|+ +++..+++.+++.+.|+||-
T Consensus 87 ~~~~~~ISIDT~~~~va~~AL~~GadiINDI~g-~~d~~~~~~~a~~~~~vVlm 139 (282)
T PRK11613 87 QRFEVWISVDTSKPEVIRESAKAGAHIINDIRS-LSEPGALEAAAETGLPVCLM 139 (282)
T ss_pred hcCCCeEEEECCCHHHHHHHHHcCCCEEEECCC-CCCHHHHHHHHHcCCCEEEE
Confidence 355899999999999999999999998733344 34668888899999999985
No 73
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=95.42 E-value=0.78 Score=42.56 Aligned_cols=107 Identities=14% Similarity=0.262 Sum_probs=78.8
Q ss_pred CHHHHHHHHHHHHHcC----Cce-EeccCChhhHHHHHhCCCCEEEEcCCCCCCHHHHHHHHhcCCcEEEeCCCCCCHHH
Q psy17999 47 SQEEYVMLQQCADQVD----IMF-TASAMDQVSFDFLLSANVPFIKIGSGDSNNIPLIKYAASKQKPLIISTGMLPSIEH 121 (335)
Q Consensus 47 ~~e~~~~L~~~~~~~G----i~f-~stpfd~~svd~l~~l~v~~~KIaS~d~~n~~LL~~~a~~gkPvilStG~~~tl~E 121 (335)
+...+..+.+.+++++ +.+ .-|+.+.++++.+.+.|.+|+- +-..|..+++++-+.+.|+|- |.. |+.|
T Consensus 48 ~~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~aGA~Fiv---sP~~~~~v~~~~~~~~i~~iP--G~~-T~~E 121 (213)
T PRK06552 48 NPFASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILAGAQFIV---SPSFNRETAKICNLYQIPYLP--GCM-TVTE 121 (213)
T ss_pred CccHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHcCCCEEE---CCCCCHHHHHHHHHcCCCEEC--CcC-CHHH
Confidence 3455666667777663 433 3588999999999999999887 336788999999988988886 555 9999
Q ss_pred HHHHHHHHHhcCCCCceeecccCCCCCCCCcccccCceEEeeecCCCCCCccCCCchHHHHHHHHCCCCCee
Q psy17999 122 VDNIYTTVKQYHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYPTPYHDINLNVIHTLRSRYPDIPIG 193 (335)
Q Consensus 122 i~~Av~~i~~g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~s~YP~~~~~~nL~~i~~L~~~fp~~pVG 193 (335)
+..|.+. |- +++-+ ||+.. +.+..|..|+..||++|+.
T Consensus 122 ~~~A~~~---Ga------------------------d~vkl-----FPa~~--~G~~~ik~l~~~~p~ip~~ 159 (213)
T PRK06552 122 IVTALEA---GS------------------------EIVKL-----FPGST--LGPSFIKAIKGPLPQVNVM 159 (213)
T ss_pred HHHHHHc---CC------------------------CEEEE-----CCccc--CCHHHHHHHhhhCCCCEEE
Confidence 9988652 32 22222 88664 5688899999999888874
No 74
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=95.40 E-value=0.32 Score=48.66 Aligned_cols=146 Identities=16% Similarity=0.276 Sum_probs=88.3
Q ss_pred CCHHHHHHHHHHHHHcCCceEeccCC---hhhHHHHHhCCCCEEEEc--CCCCC---------------CHHHHHHHHhc
Q psy17999 46 FSQEEYVMLQQCADQVDIMFTASAMD---QVSFDFLLSANVPFIKIG--SGDSN---------------NIPLIKYAASK 105 (335)
Q Consensus 46 l~~e~~~~L~~~~~~~Gi~f~stpfd---~~svd~l~~l~v~~~KIa--S~d~~---------------n~~LL~~~a~~ 105 (335)
++.+++..+....+ .|.......|. .+.++.+.+.|++.+-|. ..+.. =.+.++++.+.
T Consensus 50 ~~~~~~e~i~~i~~-~~~~~~i~~~~r~~~~di~~a~~~g~~~i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~ 128 (378)
T PRK11858 50 VSEDEKEAIKAIAK-LGLNASILALNRAVKSDIDASIDCGVDAVHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDH 128 (378)
T ss_pred cChHHHHHHHHHHh-cCCCeEEEEEcccCHHHHHHHHhCCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHC
Confidence 34555555444443 46555455554 667777777777765553 33321 11244455556
Q ss_pred CCcEEEe---CCCCCCHHHHHHHHHHHHh-cCCCCceeecccCCCCCCCCcccccCceEEeeecCCCCCCccCCCchHHH
Q psy17999 106 QKPLIIS---TGMLPSIEHVDNIYTTVKQ-YHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYPTPYHDINLNVIH 181 (335)
Q Consensus 106 gkPvilS---tG~~~tl~Ei~~Av~~i~~-g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~s~YP~~~~~~nL~~i~ 181 (335)
|..|.++ .+.+ +++.+.+.++.+.. |-. .|.+|+.. .+-+|.+-.+ .+.
T Consensus 129 G~~v~~~~ed~~r~-~~~~l~~~~~~~~~~Ga~--~I~l~DT~----------------------G~~~P~~v~~--lv~ 181 (378)
T PRK11858 129 GLYVSFSAEDASRT-DLDFLIEFAKAAEEAGAD--RVRFCDTV----------------------GILDPFTMYE--LVK 181 (378)
T ss_pred CCeEEEEeccCCCC-CHHHHHHHHHHHHhCCCC--EEEEeccC----------------------CCCCHHHHHH--HHH
Confidence 7777665 2234 67777777776665 544 45555432 3334443333 367
Q ss_pred HHHHHCCCCCeecCCCCC-C--hHHHHHHHHcCCcEEEeccCCC
Q psy17999 182 TLRSRYPDIPIGYSGHEN-G--VHVCYAAVAMGAQIIEKHFTLD 222 (335)
Q Consensus 182 ~L~~~fp~~pVG~SdHt~-g--~~~~~aAvalGA~vIEkH~tld 222 (335)
.|++.+ ++|+|+-.|.. | .+-+++|+..||+.|+ .|+.
T Consensus 182 ~l~~~~-~~~l~~H~Hnd~GlA~AN~laAv~aGa~~vd--~tv~ 222 (378)
T PRK11858 182 ELVEAV-DIPIEVHCHNDFGMATANALAGIEAGAKQVH--TTVN 222 (378)
T ss_pred HHHHhc-CCeEEEEecCCcCHHHHHHHHHHHcCCCEEE--Eeec
Confidence 888888 89999988864 4 5567999999999997 4554
No 75
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=95.33 E-value=0.13 Score=47.20 Aligned_cols=78 Identities=13% Similarity=0.033 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHcC-CceEeccCChhhHHHHHhCCCCEEEEcCC---------CCCCHHHHHHHHh-cCCcEEEeCCCCC
Q psy17999 49 EEYVMLQQCADQVD-IMFTASAMDQVSFDFLLSANVPFIKIGSG---------DSNNIPLIKYAAS-KQKPLIISTGMLP 117 (335)
Q Consensus 49 e~~~~L~~~~~~~G-i~f~stpfd~~svd~l~~l~v~~~KIaS~---------d~~n~~LL~~~a~-~gkPvilStG~~~ 117 (335)
+...++.+.+++.| +.++..+.+.+.+..+.++|++++.+.+. ...++.+++++.+ .+.||+..-|.+
T Consensus 109 ~~~~~~i~~~~~~g~~~iiv~v~t~~ea~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~l~~i~~~~~ipvia~GGI~- 187 (219)
T cd04729 109 ETLAELIKRIHEEYNCLLMADISTLEEALNAAKLGFDIIGTTLSGYTEETAKTEDPDFELLKELRKALGIPVIAEGRIN- 187 (219)
T ss_pred cCHHHHHHHHHHHhCCeEEEECCCHHHHHHHHHcCCCEEEccCccccccccCCCCCCHHHHHHHHHhcCCCEEEeCCCC-
Confidence 37788888888888 99999999999999999999999987432 2356788888876 489999999999
Q ss_pred CHHHHHHHHH
Q psy17999 118 SIEHVDNIYT 127 (335)
Q Consensus 118 tl~Ei~~Av~ 127 (335)
+.+++.++++
T Consensus 188 ~~~~~~~~l~ 197 (219)
T cd04729 188 SPEQAAKALE 197 (219)
T ss_pred CHHHHHHHHH
Confidence 9999988765
No 76
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=95.24 E-value=0.76 Score=43.27 Aligned_cols=166 Identities=17% Similarity=0.147 Sum_probs=109.1
Q ss_pred CCHHHHHHHHHHHHHcCCceEe--ccCChhhHHHHHhCCCCEEEEcCCCCCCHHHHHHHHhc-C-CcEEEeCCCC-----
Q psy17999 46 FSQEEYVMLQQCADQVDIMFTA--SAMDQVSFDFLLSANVPFIKIGSGDSNNIPLIKYAASK-Q-KPLIISTGML----- 116 (335)
Q Consensus 46 l~~e~~~~L~~~~~~~Gi~f~s--tpfd~~svd~l~~l~v~~~KIaS~d~~n~~LL~~~a~~-g-kPvilStG~~----- 116 (335)
.....+..+.+.++..+++++. -+.+.++++.+...|++.+-|++.-+.|..+++++.+. | .-|++|.-.-
T Consensus 58 ~~~~n~~~i~~i~~~~~~pv~~~GGi~s~~d~~~~~~~Ga~~vivgt~~~~~p~~~~~~~~~~~~~~iv~slD~~~g~~~ 137 (254)
T TIGR00735 58 GRTTMIDVVERTAETVFIPLTVGGGIKSIEDVDKLLRAGADKVSINTAAVKNPELIYELADRFGSQCIVVAIDAKRVYVN 137 (254)
T ss_pred cChhhHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEEChhHhhChHHHHHHHHHcCCCCEEEEEEeccCCCC
Confidence 4445677888888888888777 67999999999999999999999999999999998864 3 2355554211
Q ss_pred --------------CCHHHHHHHHHHHHhcCCCCceeecccCCCCCCCCcccccCceEEeeecCCCCCCccCCCchHHHH
Q psy17999 117 --------------PSIEHVDNIYTTVKQYHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYPTPYHDINLNVIHT 182 (335)
Q Consensus 117 --------------~tl~Ei~~Av~~i~~g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~s~YP~~~~~~nL~~i~~ 182 (335)
.+-.+....++.+....- +..++|..+...+. .-.|+..+..
T Consensus 138 ~~~~~~v~i~gw~~~~~~~~~~~~~~l~~~G~-----------------------~~iivt~i~~~g~~-~g~~~~~~~~ 193 (254)
T TIGR00735 138 SYCWYEVYIYGGRESTGLDAVEWAKEVEKLGA-----------------------GEILLTSMDKDGTK-SGYDLELTKA 193 (254)
T ss_pred CCccEEEEEeCCcccCCCCHHHHHHHHHHcCC-----------------------CEEEEeCcCcccCC-CCCCHHHHHH
Confidence 012233344444444222 45666777665443 4588999999
Q ss_pred HHHHCCCCCeecCCCCCChHHHHHHHHcC-CcEEEeccCCCCCCCCCCCCCCCCHHHHHHHHH
Q psy17999 183 LRSRYPDIPIGYSGHENGVHVCYAAVAMG-AQIIEKHFTLDKSWKGSDHASSLTPPELKALVT 244 (335)
Q Consensus 183 L~~~fp~~pVG~SdHt~g~~~~~aAvalG-A~vIEkH~tld~~~~G~Dh~~Sl~p~el~~lv~ 244 (335)
+++.. ++||..++=-....-...+...| |+.+ ..-+. .|.-.++..++++.++
T Consensus 194 i~~~~-~ipvia~GGi~s~~di~~~~~~g~~dgv----~~g~a----~~~~~~~~~~~~~~~~ 247 (254)
T TIGR00735 194 VSEAV-KIPVIASGGAGKPEHFYEAFTKGKADAA----LAASV----FHYREITIGEVKEYLA 247 (254)
T ss_pred HHHhC-CCCEEEeCCCCCHHHHHHHHHcCCccee----eEhHH----HhCCCCCHHHHHHHHH
Confidence 99987 89998776454555555566666 6632 11111 2333456666665554
No 77
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=95.23 E-value=1.6 Score=39.89 Aligned_cols=110 Identities=15% Similarity=0.185 Sum_probs=69.4
Q ss_pred hhhHHHHHhCCCCEEEEcCCCCCCHHHHHHHHhcCCcEEEeCCCCCCHHHHHHHHHHHHhcCCCCceeecccCCCCCCCC
Q psy17999 72 QVSFDFLLSANVPFIKIGSGDSNNIPLIKYAASKQKPLIISTGMLPSIEHVDNIYTTVKQYHSNLSILHCVSAYPTPYPT 151 (335)
Q Consensus 72 ~~svd~l~~l~v~~~KIaS~d~~n~~LL~~~a~~gkPvilStG~~~tl~Ei~~Av~~i~~g~~~~~~~~c~~g~~~~~~~ 151 (335)
.+.++.+.++|++++.++.. ....+++++.+.+.|++.+. . +.+++..+.+ .+ .
T Consensus 70 ~~~~~~~~~~g~d~v~l~~~--~~~~~~~~~~~~~i~~i~~v--~-~~~~~~~~~~---~g-a----------------- 123 (236)
T cd04730 70 EALLEVALEEGVPVVSFSFG--PPAEVVERLKAAGIKVIPTV--T-SVEEARKAEA---AG-A----------------- 123 (236)
T ss_pred HHHHHHHHhCCCCEEEEcCC--CCHHHHHHHHHcCCEEEEeC--C-CHHHHHHHHH---cC-C-----------------
Confidence 34678888999999999876 56888999998899998874 4 6666655443 12 2
Q ss_pred cccccCceEEeeecC--CCCCCccCCCchHHHHHHHHCCCCCeecCCCCCChHHHHHHHHcCCcE
Q psy17999 152 VKQYHSNLSILHCVS--AYPTPYHDINLNVIHTLRSRYPDIPIGYSGHENGVHVCYAAVAMGAQI 214 (335)
Q Consensus 152 ~~~~~~~l~llHC~s--~YP~~~~~~nL~~i~~L~~~fp~~pVG~SdHt~g~~~~~aAvalGA~v 214 (335)
+.+++++.. .+..+.+...+..+..+++.+ ++||...+=-....-...+...||+-
T Consensus 124 ------d~i~~~~~~~~G~~~~~~~~~~~~i~~i~~~~-~~Pvi~~GGI~~~~~v~~~l~~Gadg 181 (236)
T cd04730 124 ------DALVAQGAEAGGHRGTFDIGTFALVPEVRDAV-DIPVIAAGGIADGRGIAAALALGADG 181 (236)
T ss_pred ------CEEEEeCcCCCCCCCccccCHHHHHHHHHHHh-CCCEEEECCCCCHHHHHHHHHcCCcE
Confidence 344444321 111121224577888888888 78985433121123344556789983
No 78
>PRK06852 aldolase; Validated
Probab=95.20 E-value=0.34 Score=47.42 Aligned_cols=82 Identities=12% Similarity=0.073 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHcCCceEecc----------CChhh----HHHHHhCCCCEEEEcCCCC---CCHHHHHH-HHhc-CCcE
Q psy17999 49 EEYVMLQQCADQVDIMFTASA----------MDQVS----FDFLLSANVPFIKIGSGDS---NNIPLIKY-AASK-QKPL 109 (335)
Q Consensus 49 e~~~~L~~~~~~~Gi~f~stp----------fd~~s----vd~l~~l~v~~~KIaS~d~---~n~~LL~~-~a~~-gkPv 109 (335)
+++.++.+.|+++|++.+... .|++- +....++|.|++|+.-..- .+...+++ ++.. ..||
T Consensus 154 ~~l~~v~~ea~~~GlPll~~~yprG~~i~~~~~~~~ia~aaRiaaELGADIVKv~y~~~~~~g~~e~f~~vv~~~g~vpV 233 (304)
T PRK06852 154 SEAAQIIYEAHKHGLIAVLWIYPRGKAVKDEKDPHLIAGAAGVAACLGADFVKVNYPKKEGANPAELFKEAVLAAGRTKV 233 (304)
T ss_pred HHHHHHHHHHHHhCCcEEEEeeccCcccCCCccHHHHHHHHHHHHHHcCCEEEecCCCcCCCCCHHHHHHHHHhCCCCcE
Confidence 678999999999999998632 22222 3455689999999987621 33444544 3445 6789
Q ss_pred EEeCCCCCCHHHHHHHHH-HHH
Q psy17999 110 IISTGMLPSIEHVDNIYT-TVK 130 (335)
Q Consensus 110 ilStG~~~tl~Ei~~Av~-~i~ 130 (335)
+++=|...+.+|+.+-+. .+.
T Consensus 234 viaGG~k~~~~e~L~~v~~ai~ 255 (304)
T PRK06852 234 VCAGGSSTDPEEFLKQLYEQIH 255 (304)
T ss_pred EEeCCCCCCHHHHHHHHHHHHH
Confidence 999886645556665544 445
No 79
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=95.14 E-value=0.048 Score=50.64 Aligned_cols=83 Identities=13% Similarity=0.209 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHcCCceEeccCCh--h------------hHHHHHhCCCCEEEEcCC-----CCCCHHHHHHHH-hcCCc
Q psy17999 49 EEYVMLQQCADQVDIMFTASAMDQ--V------------SFDFLLSANVPFIKIGSG-----DSNNIPLIKYAA-SKQKP 108 (335)
Q Consensus 49 e~~~~L~~~~~~~Gi~f~stpfd~--~------------svd~l~~l~v~~~KIaS~-----d~~n~~LL~~~a-~~gkP 108 (335)
+++.++.+.|+++|++++..++-. + ....+.++|+|++|...+ ...+..+++++. ....|
T Consensus 112 ~~i~~v~~~~~~~gl~vIlE~~l~~~~~~~~~~~~~I~~a~ria~e~GaD~vKt~tg~~~~~t~~~~~~~~~~~~~~~~p 191 (236)
T PF01791_consen 112 EEIAAVVEECHKYGLKVILEPYLRGEEVADEKKPDLIARAARIAAELGADFVKTSTGKPVGATPEDVELMRKAVEAAPVP 191 (236)
T ss_dssp HHHHHHHHHHHTSEEEEEEEECECHHHBSSTTHHHHHHHHHHHHHHTT-SEEEEE-SSSSCSHHHHHHHHHHHHHTHSST
T ss_pred HHHHHHHHHHhcCCcEEEEEEecCchhhcccccHHHHHHHHHHHHHhCCCEEEecCCccccccHHHHHHHHHHHHhcCCC
Confidence 788999999999999999885422 2 234556799999999988 222345555544 46889
Q ss_pred ----EEEeCCCCCCHH----HHHHHHHHHHhcC
Q psy17999 109 ----LIISTGMLPSIE----HVDNIYTTVKQYH 133 (335)
Q Consensus 109 ----vilStG~~~tl~----Ei~~Av~~i~~g~ 133 (335)
|.+|=|.. .+ .++.|.+++..|.
T Consensus 192 ~~~~Vk~sGGi~--~~~~~~~l~~a~~~i~aGa 222 (236)
T PF01791_consen 192 GKVGVKASGGID--AEDFLRTLEDALEFIEAGA 222 (236)
T ss_dssp TTSEEEEESSSS--HHHHHHSHHHHHHHHHTTH
T ss_pred cceEEEEeCCCC--hHHHHHHHHHHHHHHHcCC
Confidence 99998872 22 3334444555453
No 80
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=95.14 E-value=1.3 Score=42.05 Aligned_cols=149 Identities=15% Similarity=0.120 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHHcCCceEecc--CChhhHHHHHhCCCCEEEEcCCCCCCHHHHHH----------------HHhcCCcE
Q psy17999 48 QEEYVMLQQCADQVDIMFTASA--MDQVSFDFLLSANVPFIKIGSGDSNNIPLIKY----------------AASKQKPL 109 (335)
Q Consensus 48 ~e~~~~L~~~~~~~Gi~f~stp--fd~~svd~l~~l~v~~~KIaS~d~~n~~LL~~----------------~a~~gkPv 109 (335)
.+.+..+.+..++.||.+..++ .+++.++.|.+.|++.+-++ -+ .+..+++. +.+.|.++
T Consensus 97 ~~~~~~i~~~~~~~~i~~~~~~g~~~~e~l~~Lk~aG~~~v~i~-~E-~~~~~~~~i~~~~s~~~~~~ai~~l~~~Gi~v 174 (296)
T TIGR00433 97 MEYVEAMVQIVEEMGLKTCATLGLLDPEQAKRLKDAGLDYYNHN-LD-TSQEFYSNIISTHTYDDRVDTLENAKKAGLKV 174 (296)
T ss_pred HHHHHHHHHHHHhCCCeEEecCCCCCHHHHHHHHHcCCCEEEEc-cc-CCHHHHhhccCCCCHHHHHHHHHHHHHcCCEE
Confidence 3467777788888999887775 78999999999999998776 33 44444443 33456664
Q ss_pred EEe--CCCCCCHHHHHHHHHHHHhcCCCCceeecccCCCCCCCCcccccCceEEeeecCCCC-CCccC-------CCchH
Q psy17999 110 IIS--TGMLPSIEHVDNIYTTVKQYHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYP-TPYHD-------INLNV 179 (335)
Q Consensus 110 ilS--tG~~~tl~Ei~~Av~~i~~g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~s~YP-~~~~~-------~nL~~ 179 (335)
... .|+.-+.+++.+.++.+..-+. +.+-+|-...+| |+.+. --++.
T Consensus 175 ~~~~i~Gl~et~~d~~~~~~~l~~l~~-----------------------~~i~l~~l~p~~gT~l~~~~~~s~~~~~~~ 231 (296)
T TIGR00433 175 CSGGIFGLGETVEDRIGLALALANLPP-----------------------ESVPINFLVKIKGTPLADNKELSADDALKT 231 (296)
T ss_pred EEeEEEeCCCCHHHHHHHHHHHHhCCC-----------------------CEEEeeeeEEcCCCccCCCCCCCHHHHHHH
Confidence 211 3544477888887777765222 233344333344 22222 22466
Q ss_pred HHHHHHHCCCCCeecCC-C--CCChHHHHHHHHcCCc--EEEeccCC
Q psy17999 180 IHTLRSRYPDIPIGYSG-H--ENGVHVCYAAVAMGAQ--IIEKHFTL 221 (335)
Q Consensus 180 i~~L~~~fp~~pVG~Sd-H--t~g~~~~~aAvalGA~--vIEkH~tl 221 (335)
|...|..+|+..|-.++ . ..+......|+..||+ ++-.-.|-
T Consensus 232 ia~~r~~lp~~~i~~~~~~~~~~~~~~~~~~l~~G~n~i~~g~~~~~ 278 (296)
T TIGR00433 232 IALARIIMPKAEIRLAGGREVNMRELQQAMCFMAGANSIFVGDYLTT 278 (296)
T ss_pred HHHHHHHCCcceEEEeCCcchhhhhhHHHHHHHhcCceEEEcCcccC
Confidence 77778888865553322 1 2233334448888998 55544443
No 81
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=95.11 E-value=0.16 Score=50.95 Aligned_cols=77 Identities=13% Similarity=0.170 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHcCCceEe-ccCChhhHHHHHhCCCCEEEEcCCC--------CC--CHHHHHHHHhc-------------
Q psy17999 50 EYVMLQQCADQVDIMFTA-SAMDQVSFDFLLSANVPFIKIGSGD--------SN--NIPLIKYAASK------------- 105 (335)
Q Consensus 50 ~~~~L~~~~~~~Gi~f~s-tpfd~~svd~l~~l~v~~~KIaS~d--------~~--n~~LL~~~a~~------------- 105 (335)
++..+.+.+++.+++++. .+++.+.+..+.+.|+|+++|+.+. .. ..|++.++.+.
T Consensus 175 ~~~~i~~~ik~~~ipVIaG~V~t~e~A~~l~~aGAD~V~VG~G~Gs~~~t~~~~g~g~p~~~ai~~~~~a~~~~l~~~~~ 254 (368)
T PRK08649 175 EPLNLKEFIYELDVPVIVGGCVTYTTALHLMRTGAAGVLVGIGPGAACTSRGVLGIGVPMATAIADVAAARRDYLDETGG 254 (368)
T ss_pred CHHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHcCCCEEEECCCCCcCCCCcccCCCCcCHHHHHHHHHHHHHHhhhhhcC
Confidence 456678888889999998 9999999998889999999998442 12 25666544321
Q ss_pred -CCcEEEeCCCCCCHHHHHHHHH
Q psy17999 106 -QKPLIISTGMLPSIEHVDNIYT 127 (335)
Q Consensus 106 -gkPvilStG~~~tl~Ei~~Av~ 127 (335)
+.|||-+=|.. +-.++.+|+.
T Consensus 255 ~~vpVIAdGGI~-~~~diakAla 276 (368)
T PRK08649 255 RYVHVIADGGIG-TSGDIAKAIA 276 (368)
T ss_pred CCCeEEEeCCCC-CHHHHHHHHH
Confidence 58999999999 9999999875
No 82
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=95.08 E-value=1 Score=42.19 Aligned_cols=135 Identities=10% Similarity=0.073 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHcCCceEe--ccCChhhHHHHHhCCCCEEEEcCCCCCCHHHHHHHHhc-CCcEEEeCCCC---------
Q psy17999 49 EEYVMLQQCADQVDIMFTA--SAMDQVSFDFLLSANVPFIKIGSGDSNNIPLIKYAASK-QKPLIISTGML--------- 116 (335)
Q Consensus 49 e~~~~L~~~~~~~Gi~f~s--tpfd~~svd~l~~l~v~~~KIaS~d~~n~~LL~~~a~~-gkPvilStG~~--------- 116 (335)
..+..+.+.++..++++.. -.-+.++++.+.++|++.+-|+|.-++|+.+++++++. +--|++|-=.-
T Consensus 63 ~n~~~I~~i~~~~~~pi~vGGGIrs~e~v~~~l~~Ga~kvvigt~a~~~~~~l~~~~~~fg~~ivvslD~~~g~v~~~gw 142 (234)
T PRK13587 63 REFDYIKSLRRLTTKDIEVGGGIRTKSQIMDYFAAGINYCIVGTKGIQDTDWLKEMAHTFPGRIYLSVDAYGEDIKVNGW 142 (234)
T ss_pred chHHHHHHHHhhcCCeEEEcCCcCCHHHHHHHHHCCCCEEEECchHhcCHHHHHHHHHHcCCCEEEEEEeeCCEEEecCC
Confidence 3577788888888888777 56889999999999999999999999999999998875 33366663211
Q ss_pred -----CCHHHHHHHHHHHHh-cCCCCceeecccCCCCCCCCcccccCceEEeeecCCCCCC-ccCCCchHHHHHHHHCCC
Q psy17999 117 -----PSIEHVDNIYTTVKQ-YHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYPTP-YHDINLNVIHTLRSRYPD 189 (335)
Q Consensus 117 -----~tl~Ei~~Av~~i~~-g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~s~YP~~-~~~~nL~~i~~L~~~fp~ 189 (335)
.++.|+. +.+.. +-. .+++.+ + -.-. ..-.|+..+..+.+.. +
T Consensus 143 ~~~~~~~~~~~~---~~~~~~g~~--~ii~td----------------------i--~~dGt~~G~~~~li~~l~~~~-~ 192 (234)
T PRK13587 143 EEDTELNLFSFV---RQLSDIPLG--GIIYTD----------------------I--AKDGKMSGPNFELTGQLVKAT-T 192 (234)
T ss_pred cccCCCCHHHHH---HHHHHcCCC--EEEEec----------------------c--cCcCCCCccCHHHHHHHHHhC-C
Confidence 1223332 33333 322 111111 1 1111 1447888899999876 8
Q ss_pred CCeecCCCCCChHHHHHHHHcCCc
Q psy17999 190 IPIGYSGHENGVHVCYAAVAMGAQ 213 (335)
Q Consensus 190 ~pVG~SdHt~g~~~~~aAvalGA~ 213 (335)
+||-+++......-...+..+|++
T Consensus 193 ipvi~~GGi~s~edi~~l~~~G~~ 216 (234)
T PRK13587 193 IPVIASGGIRHQQDIQRLASLNVH 216 (234)
T ss_pred CCEEEeCCCCCHHHHHHHHHcCCC
Confidence 999998876665555556678887
No 83
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=95.04 E-value=0.98 Score=41.38 Aligned_cols=137 Identities=20% Similarity=0.207 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHcCCceEec--cCChhhHHHHHhCCCCEEEEcCCCCCCHHHHHHHHhc-CCcEEEeC----------CC
Q psy17999 49 EEYVMLQQCADQVDIMFTAS--AMDQVSFDFLLSANVPFIKIGSGDSNNIPLIKYAASK-QKPLIIST----------GM 115 (335)
Q Consensus 49 e~~~~L~~~~~~~Gi~f~st--pfd~~svd~l~~l~v~~~KIaS~d~~n~~LL~~~a~~-gkPvilSt----------G~ 115 (335)
..+..+.+.++..+++++.. +-+.+.+..+.+.|++.+-+++.-+.+..+++++.+. +..+++|- |.
T Consensus 61 ~~~~~i~~i~~~~~~pv~~~GGI~~~ed~~~~~~~Ga~~vilg~~~l~~~~~l~ei~~~~~~~i~vsid~k~~~v~~~g~ 140 (233)
T PRK00748 61 VNLELIEAIVKAVDIPVQVGGGIRSLETVEALLDAGVSRVIIGTAAVKNPELVKEACKKFPGKIVVGLDARDGKVATDGW 140 (233)
T ss_pred ccHHHHHHHHHHCCCCEEEcCCcCCHHHHHHHHHcCCCEEEECchHHhCHHHHHHHHHHhCCCceeeeeccCCEEEEccC
Confidence 45677777778888888774 4677888888899999999999999999999988774 33355542 21
Q ss_pred ----CCCHHHHHHHHHHHHhcCCCCceeecccCCCCCCCCcccccCceEEeeecCCCCCCccCCCchHHHHHHHHCCCCC
Q psy17999 116 ----LPSIEHVDNIYTTVKQYHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYPTPYHDINLNVIHTLRSRYPDIP 191 (335)
Q Consensus 116 ----~~tl~Ei~~Av~~i~~g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~s~YP~~~~~~nL~~i~~L~~~fp~~p 191 (335)
..++.|+.+. +...+. +-.++|..+.-=+. .-.|+..+..+++.. ++|
T Consensus 141 ~~~~~~~~~e~~~~---~~~~g~-----------------------~~ii~~~~~~~g~~-~G~d~~~i~~l~~~~-~ip 192 (233)
T PRK00748 141 LETSGVTAEDLAKR---FEDAGV-----------------------KAIIYTDISRDGTL-SGPNVEATRELAAAV-PIP 192 (233)
T ss_pred eecCCCCHHHHHHH---HHhcCC-----------------------CEEEEeeecCcCCc-CCCCHHHHHHHHHhC-CCC
Confidence 1133444333 333122 34566644322222 237999999999988 699
Q ss_pred eecCCCCCChHHHHHHHHcC-Cc
Q psy17999 192 IGYSGHENGVHVCYAAVAMG-AQ 213 (335)
Q Consensus 192 VG~SdHt~g~~~~~aAvalG-A~ 213 (335)
|..++.-....-...+...| |+
T Consensus 193 via~GGi~~~~di~~~~~~g~~~ 215 (233)
T PRK00748 193 VIASGGVSSLDDIKALKGLGAVE 215 (233)
T ss_pred EEEeCCCCCHHHHHHHHHcCCcc
Confidence 98888777655555566666 65
No 84
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=95.00 E-value=0.71 Score=45.38 Aligned_cols=67 Identities=22% Similarity=0.332 Sum_probs=46.0
Q ss_pred CchHHHHHHHHCCCC--Ce-ecCCCCCChHHHHHHHHcCCc-----EEEeccCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q psy17999 176 NLNVIHTLRSRYPDI--PI-GYSGHENGVHVCYAAVAMGAQ-----IIEKHFTLDKSWKGSDHASSLTPPELKALVTGI 246 (335)
Q Consensus 176 nL~~i~~L~~~fp~~--pV-G~SdHt~g~~~~~aAvalGA~-----vIEkH~tld~~~~G~Dh~~Sl~p~el~~lv~~i 246 (335)
.|+.|...|=.+|+. .| +.. .+.|......+...||+ ++|-|+..+.. ..+...+++++|..+++++
T Consensus 257 ~lr~iAv~Rl~lp~~~~~i~a~~-~~l~~~~~~~~l~~Gan~~~g~~~~e~v~~~~g---~~~~~~~~~~~~~~~i~~~ 331 (343)
T TIGR03551 257 DLKVHAIARILLHGLIDNIQASW-VKLGKKLAQVALRCGANDLGGTLMEESISRAAG---ASHGEYLSPEELEAIIEDA 331 (343)
T ss_pred HHHHHHHHHHhCCCcccCeeccc-cccCHHHHHHHHhCCCccCCccceecccccccC---CCCCCCCCHHHHHHHHHHc
Confidence 456666666666764 34 333 57787776778888886 78888876544 3455568999999888764
No 85
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=94.98 E-value=1.9 Score=41.67 Aligned_cols=182 Identities=18% Similarity=0.151 Sum_probs=102.9
Q ss_pred CCHHHHHHHHHHHHHcC--CceEe-cc------------CChhhHHHHHhCCCCEEEEcCCCC--------------C--
Q psy17999 46 FSQEEYVMLQQCADQVD--IMFTA-SA------------MDQVSFDFLLSANVPFIKIGSGDS--------------N-- 94 (335)
Q Consensus 46 l~~e~~~~L~~~~~~~G--i~f~s-tp------------fd~~svd~l~~l~v~~~KIaS~d~--------------~-- 94 (335)
+..+.+.++.+..++.+ +.+.+ |+ -+++.++.|.+.|++.+-..+.+. +
T Consensus 66 ~~~~~~~~i~~~Ik~~~~~i~~~~~s~~e~~~~~~~~g~~~~e~l~~LkeAGl~~i~~~g~E~l~~~~~~~i~~~~~t~~ 145 (309)
T TIGR00423 66 LDIEYYEELFRAIKQEFPDVHIHAFSPMEVYFLAKNEGLSIEEVLKRLKKAGLDSMPGTGAEILDDSVRRKICPNKLSSD 145 (309)
T ss_pred CCHHHHHHHHHHHHHHCCCceEEecCHHHHHHHHHHcCCCHHHHHHHHHHcCCCcCCCCcchhcCHHHHHhhCCCCCCHH
Confidence 45566777777777765 33331 11 246778888888888763212111 1
Q ss_pred -CHHHHHHHHhcCCcEEEe--CCCCCCHHHHHHHHHHHHh-cCCCCceeecccCCCCCCCCcccccCceEEee-ecC---
Q psy17999 95 -NIPLIKYAASKQKPLIIS--TGMLPSIEHVDNIYTTVKQ-YHSNLSILHCVSAYPTPYPTVKQYHSNLSILH-CVS--- 166 (335)
Q Consensus 95 -n~~LL~~~a~~gkPvilS--tG~~~tl~Ei~~Av~~i~~-g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llH-C~s--- 166 (335)
++..++.+.+.|.++-.. .|+..|.+|+.+-+..+++ +.. .+..+.. + ++-.+| -+.
T Consensus 146 ~~l~~i~~a~~~Gi~~~s~~iiG~~Et~ed~~~~l~~lr~l~~~--------~~~f~~f--i-----P~~f~~~~t~~l~ 210 (309)
T TIGR00423 146 EWLEVIKTAHRLGIPTTATMMFGHVENPEHRVEHLLRIRKIQEK--------TGGFTEF--I-----PLPFQPENNPYLE 210 (309)
T ss_pred HHHHHHHHHHHcCCCceeeEEecCCCCHHHHHHHHHHHHhhchh--------hCCeeeE--E-----eeeecCCCChhhc
Confidence 145666777778776522 3433578888877777775 321 0000000 0 111111 010
Q ss_pred --CCCCCccCCCchHHHHHHHHCCCCC-e-ecCCCCCChHHHHHHHHcCCc-----EEEeccCCCCCCCCCCCCCCCCHH
Q psy17999 167 --AYPTPYHDINLNVIHTLRSRYPDIP-I-GYSGHENGVHVCYAAVAMGAQ-----IIEKHFTLDKSWKGSDHASSLTPP 237 (335)
Q Consensus 167 --~YP~~~~~~nL~~i~~L~~~fp~~p-V-G~SdHt~g~~~~~aAvalGA~-----vIEkH~tld~~~~G~Dh~~Sl~p~ 237 (335)
..|.+...-.|+.|...|=.+|+++ | ++- .+.|......|...||+ ++|-|++.+- |.++...++++
T Consensus 211 ~~~~~~~~~~e~lr~iA~~Rl~lp~~~~i~a~~-~~l~~~~~~~~l~~Gand~~gt~~~e~v~~~a---g~~~~~~~~~~ 286 (309)
T TIGR00423 211 GEVRKGASGIDDLKVIAISRILLNNIRNIQASW-VKLGLKLAQVALEFGANDLGGTLMEENISKAA---GAKSGVGLTVE 286 (309)
T ss_pred cCCCCCCCHHHHHHHHHHHHHhcCCCccceecc-hhcCHHHHHHHHhCCCccCCcccccceecccc---CCCCCCCCCHH
Confidence 0122222334777777777777655 4 222 46677767788888887 6777777653 34566678999
Q ss_pred HHHHHHHHH
Q psy17999 238 ELKALVTGI 246 (335)
Q Consensus 238 el~~lv~~i 246 (335)
+|.+++++.
T Consensus 287 ~l~~~~~~~ 295 (309)
T TIGR00423 287 ELIEAIKDA 295 (309)
T ss_pred HHHHHHHHc
Confidence 999888764
No 86
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=94.85 E-value=0.43 Score=45.66 Aligned_cols=118 Identities=18% Similarity=0.246 Sum_probs=77.7
Q ss_pred ChhhHHHHHhCCCCEEEEcCCCCCCHHHHHH----HHhcCCcEE--EeC---CCCCCHHHHHHHHHHHHh-cCCCCceee
Q psy17999 71 DQVSFDFLLSANVPFIKIGSGDSNNIPLIKY----AASKQKPLI--IST---GMLPSIEHVDNIYTTVKQ-YHSNLSILH 140 (335)
Q Consensus 71 d~~svd~l~~l~v~~~KIaS~d~~n~~LL~~----~a~~gkPvi--lSt---G~~~tl~Ei~~Av~~i~~-g~~~~~~~~ 140 (335)
.+..++...+.|++.+-|. ..+++++.++. +-+.|+-+. ++. +.. +.+.+.+.++.+.+ |.. .|-+
T Consensus 93 ~~~di~~~~~~g~~~iri~-~~~~~~~~~~~~i~~ak~~G~~v~~~i~~~~~~~~-~~~~~~~~~~~~~~~Ga~--~i~l 168 (275)
T cd07937 93 VELFVEKAAKNGIDIFRIF-DALNDVRNLEVAIKAVKKAGKHVEGAICYTGSPVH-TLEYYVKLAKELEDMGAD--SICI 168 (275)
T ss_pred HHHHHHHHHHcCCCEEEEe-ecCChHHHHHHHHHHHHHCCCeEEEEEEecCCCCC-CHHHHHHHHHHHHHcCCC--EEEE
Confidence 4556777788889998884 45556665543 334576655 343 456 88999988888877 644 4444
Q ss_pred cccCCCCCCCCcccccCceEEeeecCCCCCCccCCCchHHHHHHHHCCCCCeecCCCC-CC--hHHHHHHHHcCCcEEEe
Q psy17999 141 CVSAYPTPYPTVKQYHSNLSILHCVSAYPTPYHDINLNVIHTLRSRYPDIPIGYSGHE-NG--VHVCYAAVAMGAQIIEK 217 (335)
Q Consensus 141 c~~g~~~~~~~~~~~~~~l~llHC~s~YP~~~~~~nL~~i~~L~~~fp~~pVG~SdHt-~g--~~~~~aAvalGA~vIEk 217 (335)
|++. ..=+|..-.+ .+..+++.+ ++|+|+=.|. .| ..-+++|+..||+.|+-
T Consensus 169 ~DT~----------------------G~~~P~~v~~--lv~~l~~~~-~~~l~~H~Hnd~GlA~aN~laA~~aGa~~vd~ 223 (275)
T cd07937 169 KDMA----------------------GLLTPYAAYE--LVKALKKEV-GLPIHLHTHDTSGLAVATYLAAAEAGVDIVDT 223 (275)
T ss_pred cCCC----------------------CCCCHHHHHH--HHHHHHHhC-CCeEEEEecCCCChHHHHHHHHHHhCCCEEEE
Confidence 4442 2222332222 367888889 4999998885 35 55578899999999983
No 87
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=94.80 E-value=0.81 Score=43.68 Aligned_cols=39 Identities=33% Similarity=0.684 Sum_probs=31.9
Q ss_pred HHHHHHHHCCCCCeecCCCCC-C--hHHHHHHHHcCCcEEEe
Q psy17999 179 VIHTLRSRYPDIPIGYSGHEN-G--VHVCYAAVAMGAQIIEK 217 (335)
Q Consensus 179 ~i~~L~~~fp~~pVG~SdHt~-g--~~~~~aAvalGA~vIEk 217 (335)
.+..+++.+|++++|+-.|.. | ..-+++|+..||+.|+-
T Consensus 185 lv~~l~~~~~~~~l~~H~Hnd~Gla~An~laA~~aGa~~id~ 226 (273)
T cd07941 185 IVKEVRERLPGVPLGIHAHNDSGLAVANSLAAVEAGATQVQG 226 (273)
T ss_pred HHHHHHHhCCCCeeEEEecCCCCcHHHHHHHHHHcCCCEEEE
Confidence 367889999889999987753 4 66678999999999984
No 88
>PRK12399 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=94.75 E-value=0.47 Score=46.76 Aligned_cols=94 Identities=16% Similarity=0.133 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHcCCceEecc--CC-----h--------------hhHHHHH--hCCCCEEEEcCCC------------C
Q psy17999 49 EEYVMLQQCADQVDIMFTASA--MD-----Q--------------VSFDFLL--SANVPFIKIGSGD------------S 93 (335)
Q Consensus 49 e~~~~L~~~~~~~Gi~f~stp--fd-----~--------------~svd~l~--~l~v~~~KIaS~d------------~ 93 (335)
+..+++-+.|+..||+|+..+ +| . +++..+. ++|||.+||...- .
T Consensus 142 a~vervg~eC~a~dipf~lE~ltY~~~~~d~~~~~yak~kP~~V~~a~kefs~~~~gvDVlKvEvPvn~~~veG~~~~e~ 221 (324)
T PRK12399 142 AYIERIGSECVAEDIPFFLEILTYDEKIADNGSVEYAKVKPHKVNEAMKVFSKPRFGVDVLKVEVPVNMKYVEGFAEGEV 221 (324)
T ss_pred HHHHHHHHHHHHCCCCeEEEEeeccCcccccccHHHHhhChHHHHHHHHHhccCCCCCcEEEEecccccccccccCcccc
Confidence 678899999999999999874 33 1 2334443 3799999993321 1
Q ss_pred --CCHHH---HHH-HHhcCCc-EEEeCCCCCCHHHHHHHHHHHHh-cCCCCceeecccCC
Q psy17999 94 --NNIPL---IKY-AASKQKP-LIISTGMLPSIEHVDNIYTTVKQ-YHSNLSILHCVSAY 145 (335)
Q Consensus 94 --~n~~L---L~~-~a~~gkP-vilStG~~~tl~Ei~~Av~~i~~-g~~~~~~~~c~~g~ 145 (335)
+--.- .++ -..++.| |+||.|. +.+.....+++-.. |.. -+=+||-|.+
T Consensus 222 ~yt~~eA~~~f~~~~~~~~~P~i~LSaGV--~~~~F~~~l~~A~~aGa~-fsGvL~GRAt 278 (324)
T PRK12399 222 VYTKEEAAQHFKEQDAATHLPYIYLSAGV--SAELFQETLVFAHEAGAK-FNGVLCGRAT 278 (324)
T ss_pred cccHHHHHHHHHHHhhccCCCEEEEcCCC--CHHHHHHHHHHHHHcCCC-cceEEeehhh
Confidence 11122 222 2236899 5566664 57888888887766 431 1236776654
No 89
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=94.73 E-value=1.8 Score=39.68 Aligned_cols=132 Identities=13% Similarity=0.081 Sum_probs=79.3
Q ss_pred HHHHHHHHHHcCCceE-------------eccCChhhHHHHHhCCCCEEEEcCCC------CCCHHHHHHHHh-cCCcEE
Q psy17999 51 YVMLQQCADQVDIMFT-------------ASAMDQVSFDFLLSANVPFIKIGSGD------SNNIPLIKYAAS-KQKPLI 110 (335)
Q Consensus 51 ~~~L~~~~~~~Gi~f~-------------stpfd~~svd~l~~l~v~~~KIaS~d------~~n~~LL~~~a~-~gkPvi 110 (335)
+..+.+..+..+++|+ .++ +.+.++.+.+.|+|++-+.... -+...+++++.+ .+.|++
T Consensus 45 ~~~i~~i~~~~~~Pil~~~~~d~~~~~~~~~~-~~~~v~~a~~aGad~I~~d~~~~~~p~~~~~~~~i~~~~~~~~i~vi 123 (221)
T PRK01130 45 VEDIKAIRAVVDVPIIGIIKRDYPDSEVYITP-TLKEVDALAAAGADIIALDATLRPRPDGETLAELVKRIKEYPGQLLM 123 (221)
T ss_pred HHHHHHHHHhCCCCEEEEEecCCCCCCceECC-CHHHHHHHHHcCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCeEE
Confidence 4455555555677765 112 2456888889999988886654 344578888888 788877
Q ss_pred EeCCCCCCHHHHHHHHHHHHhcCCCCceeecccCCCCCCCCcccccCceEEe--eecCCCCCCccCCCchHHHHHHHHCC
Q psy17999 111 ISTGMLPSIEHVDNIYTTVKQYHSNLSILHCVSAYPTPYPTVKQYHSNLSIL--HCVSAYPTPYHDINLNVIHTLRSRYP 188 (335)
Q Consensus 111 lStG~~~tl~Ei~~Av~~i~~g~~~~~~~~c~~g~~~~~~~~~~~~~~l~ll--HC~s~YP~~~~~~nL~~i~~L~~~fp 188 (335)
.. .. +++|+..+.+ .|. +++.. ++.+.-+......++..+..+++.+
T Consensus 124 ~~--v~-t~ee~~~a~~---~G~------------------------d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~~- 172 (221)
T PRK01130 124 AD--CS-TLEEGLAAQK---LGF------------------------DFIGTTLSGYTEETKKPEEPDFALLKELLKAV- 172 (221)
T ss_pred Ee--CC-CHHHHHHHHH---cCC------------------------CEEEcCCceeecCCCCCCCcCHHHHHHHHHhC-
Confidence 64 45 8888765433 132 22211 1221111122345678899999988
Q ss_pred CCCeecCCCCCChHHHHHHHHcCCcE
Q psy17999 189 DIPIGYSGHENGVHVCYAAVAMGAQI 214 (335)
Q Consensus 189 ~~pVG~SdHt~g~~~~~aAvalGA~v 214 (335)
++||.-.+=-....-...+.++||+.
T Consensus 173 ~iPvia~GGI~t~~~~~~~l~~Gadg 198 (221)
T PRK01130 173 GCPVIAEGRINTPEQAKKALELGAHA 198 (221)
T ss_pred CCCEEEECCCCCHHHHHHHHHCCCCE
Confidence 89985433222234455677899983
No 90
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=94.63 E-value=0.71 Score=43.89 Aligned_cols=61 Identities=18% Similarity=0.194 Sum_probs=49.9
Q ss_pred HHHHHHHHHHc-CCceEeccCChhhHHHHHhCCCCEEEEcCCCCCCHHHHHHHHhcCCcEEEe
Q psy17999 51 YVMLQQCADQV-DIMFTASAMDQVSFDFLLSANVPFIKIGSGDSNNIPLIKYAASKQKPLIIS 112 (335)
Q Consensus 51 ~~~L~~~~~~~-Gi~f~stpfd~~svd~l~~l~v~~~KIaS~d~~n~~LL~~~a~~gkPvilS 112 (335)
+.++.+..++. ++++...-++++.++...+.|+++|==.|+.- +-.+++-+++.|.|+|+-
T Consensus 63 l~~~v~~~~~~~~~plsiDT~~~~vi~~al~~G~~iINsis~~~-~~~~~~l~~~~~~~vV~m 124 (257)
T TIGR01496 63 VVPVIKALRDQPDVPISVDTYRAEVARAALEAGADIINDVSGGQ-DPAMLEVAAEYGVPLVLM 124 (257)
T ss_pred HHHHHHHHHhcCCCeEEEeCCCHHHHHHHHHcCCCEEEECCCCC-CchhHHHHHHcCCcEEEE
Confidence 55555666665 99999999999999999999999987666653 566888888999999984
No 91
>TIGR01232 lacD tagatose 1,6-diphosphate aldolase. This family consists of Gram-positive proteins. Tagatose 1,6-diphosphate aldolase is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=94.56 E-value=0.77 Score=45.29 Aligned_cols=94 Identities=16% Similarity=0.139 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHcCCceEeccCC-------hhhHHH--------------HHh--CCCCEEEEcCCCCC-------C---
Q psy17999 49 EEYVMLQQCADQVDIMFTASAMD-------QVSFDF--------------LLS--ANVPFIKIGSGDSN-------N--- 95 (335)
Q Consensus 49 e~~~~L~~~~~~~Gi~f~stpfd-------~~svd~--------------l~~--l~v~~~KIaS~d~~-------n--- 95 (335)
+..+++-+.|+..||+|+..+-. ..+.++ +.+ +|+|.+||-..--- .
T Consensus 143 a~vervg~ec~a~dipf~lE~ltYd~~~~~~~~~~yak~kP~~V~~a~kefs~~~~gvDVlKvEvPvn~~~veG~~~~e~ 222 (325)
T TIGR01232 143 AYIERIGSECVAEDIPFFLEVLTYDDNIPDNGSVEFAKVKPRKVNEAMKLFSEPRFNVDVLKVEVPVNVKYVEGFAEGEV 222 (325)
T ss_pred HHHHHHHHHHHHCCCCeEEEEeccCCCCCCCCcHHHHHhChHHHHHHHHHhccCCCCCcEEEEecccccccccccCcccc
Confidence 77889999999999999997532 233333 333 79999999843211 1
Q ss_pred ----HHHHHHHH----hcCCc-EEEeCCCCCCHHHHHHHHHHHHh-cCCCCceeecccCC
Q psy17999 96 ----IPLIKYAA----SKQKP-LIISTGMLPSIEHVDNIYTTVKQ-YHSNLSILHCVSAY 145 (335)
Q Consensus 96 ----~~LL~~~a----~~gkP-vilStG~~~tl~Ei~~Av~~i~~-g~~~~~~~~c~~g~ 145 (335)
-.-.+++. .++.| |+||.|. +.+.....+++-.. |.. -+=+||-|.+
T Consensus 223 ~yt~~eA~~~f~eq~~~~~~P~i~LSaGV--~~~~F~~~l~~A~~aGa~-fsGvL~GRAt 279 (325)
T TIGR01232 223 VYTKEEAAQHFKDQDAATHLPYIYLSAGV--SAELFQETLKFAHEAGAK-FNGVLCGRAT 279 (325)
T ss_pred cccHHHHHHHHHHHhhccCCCEEEEcCCC--CHHHHHHHHHHHHHcCCC-cceEEeehhh
Confidence 22222232 36899 5566664 58888888887766 431 1236776654
No 92
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=94.51 E-value=0.65 Score=46.24 Aligned_cols=120 Identities=17% Similarity=0.214 Sum_probs=75.7
Q ss_pred CChhhHHHHHhCCCCEEEE--cCCCCCC-----------H----HHHHHHHhcCCcEEEeC---CCCCCHHHHHHHHHHH
Q psy17999 70 MDQVSFDFLLSANVPFIKI--GSGDSNN-----------I----PLIKYAASKQKPLIIST---GMLPSIEHVDNIYTTV 129 (335)
Q Consensus 70 fd~~svd~l~~l~v~~~KI--aS~d~~n-----------~----~LL~~~a~~gkPvilSt---G~~~tl~Ei~~Av~~i 129 (335)
...+.++.+.+.|++.+-| ++.+... + +.++++.+.|..|.++. +.+ +.+.+.+.++.+
T Consensus 72 ~~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~eda~r~-~~~~l~~~~~~~ 150 (363)
T TIGR02090 72 ALKKDIDKAIDCGVDSIHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFSAEDATRT-DIDFLIKVFKRA 150 (363)
T ss_pred cCHHHHHHHHHcCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeecCCC-CHHHHHHHHHHH
Confidence 3567777777788887666 4433321 2 34445555677766662 234 777777777776
Q ss_pred Hh-cCCCCceeecccCCCCCCCCcccccCceEEeeecCCCCCCccCCCchHHHHHHHHCCCCCeecCCCCC-C--hHHHH
Q psy17999 130 KQ-YHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYPTPYHDINLNVIHTLRSRYPDIPIGYSGHEN-G--VHVCY 205 (335)
Q Consensus 130 ~~-g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~s~YP~~~~~~nL~~i~~L~~~fp~~pVG~SdHt~-g--~~~~~ 205 (335)
.. |.. .|-+|+.- .+-+|.+-. ..+..|++.+ ++|+||-.|.. | ..-++
T Consensus 151 ~~~g~~--~i~l~DT~----------------------G~~~P~~v~--~li~~l~~~~-~~~l~~H~Hnd~GlA~AN~l 203 (363)
T TIGR02090 151 EEAGAD--RINIADTV----------------------GVLTPQKME--ELIKKLKENV-KLPISVHCHNDFGLATANSI 203 (363)
T ss_pred HhCCCC--EEEEeCCC----------------------CccCHHHHH--HHHHHHhccc-CceEEEEecCCCChHHHHHH
Confidence 66 544 45555541 222333322 2367788888 59999987764 4 55678
Q ss_pred HHHHcCCcEEEe
Q psy17999 206 AAVAMGAQIIEK 217 (335)
Q Consensus 206 aAvalGA~vIEk 217 (335)
+|+..||+.|+-
T Consensus 204 aA~~aGa~~vd~ 215 (363)
T TIGR02090 204 AGVKAGAEQVHV 215 (363)
T ss_pred HHHHCCCCEEEE
Confidence 999999999883
No 93
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=94.48 E-value=0.6 Score=42.53 Aligned_cols=132 Identities=9% Similarity=0.041 Sum_probs=79.7
Q ss_pred HHcCCceEeccC--Chh----hHHHHHhCCCCEEEEcCC--------------CCCCHHHHHHHHh-----cCCcEEEeC
Q psy17999 59 DQVDIMFTASAM--DQV----SFDFLLSANVPFIKIGSG--------------DSNNIPLIKYAAS-----KQKPLIIST 113 (335)
Q Consensus 59 ~~~Gi~f~stpf--d~~----svd~l~~l~v~~~KIaS~--------------d~~n~~LL~~~a~-----~gkPvilSt 113 (335)
...+.+++.+.. +++ .+..+.+.|+|.+.|..+ -.++..++.++.+ .+.||.+..
T Consensus 51 ~~~~~p~~~qi~g~~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~~~v~vk~ 130 (231)
T cd02801 51 NPEERPLIVQLGGSDPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVPIPVTVKI 130 (231)
T ss_pred CccCCCEEEEEcCCCHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 345666666554 344 455666778999988533 3457665554433 357888875
Q ss_pred CCCCCHH-HHHHHHHHHHhcCCCCceeecccCCCCCCCCcccccCceEEeeecCCCCCCccCCCchHHHHHHHHCCCCCe
Q psy17999 114 GMLPSIE-HVDNIYTTVKQYHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYPTPYHDINLNVIHTLRSRYPDIPI 192 (335)
Q Consensus 114 G~~~tl~-Ei~~Av~~i~~g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~s~YP~~~~~~nL~~i~~L~~~fp~~pV 192 (335)
..+.+.+ +....++.+...+- +...+|+.+....+....|+..+..+++.. ++||
T Consensus 131 r~~~~~~~~~~~~~~~l~~~Gv-----------------------d~i~v~~~~~~~~~~~~~~~~~~~~i~~~~-~ipv 186 (231)
T cd02801 131 RLGWDDEEETLELAKALEDAGA-----------------------SALTVHGRTREQRYSGPADWDYIAEIKEAV-SIPV 186 (231)
T ss_pred eeccCCchHHHHHHHHHHHhCC-----------------------CEEEECCCCHHHcCCCCCCHHHHHHHHhCC-CCeE
Confidence 4432443 67776666665222 456667654311112246888899999876 8999
Q ss_pred ecCCCCCChHHHHHHHHc-CCcE
Q psy17999 193 GYSGHENGVHVCYAAVAM-GAQI 214 (335)
Q Consensus 193 G~SdHt~g~~~~~aAval-GA~v 214 (335)
..++--....-...++.. ||+.
T Consensus 187 i~~Ggi~~~~d~~~~l~~~gad~ 209 (231)
T cd02801 187 IANGDIFSLEDALRCLEQTGVDG 209 (231)
T ss_pred EEeCCCCCHHHHHHHHHhcCCCE
Confidence 776654445555566666 7773
No 94
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=94.45 E-value=0.26 Score=47.18 Aligned_cols=78 Identities=12% Similarity=0.189 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHcCCceEeccCChhhHH-HHHhCCCCEEEEcCCCCCCHHHHHHHHhcCCcEEEeCCCCCCHHHHHHHHHH
Q psy17999 50 EYVMLQQCADQVDIMFTASAMDQVSFD-FLLSANVPFIKIGSGDSNNIPLIKYAASKQKPLIISTGMLPSIEHVDNIYTT 128 (335)
Q Consensus 50 ~~~~L~~~~~~~Gi~f~stpfd~~svd-~l~~l~v~~~KIaS~d~~n~~LL~~~a~~gkPvilStG~~~tl~Ei~~Av~~ 128 (335)
....+.+.++++|+. ..| .+.+ +|++-++|++-|++.+-.+.++..++.+.||+|++...++.|++|.+..++.
T Consensus 39 ~~~~a~~~a~~~~~~---~~~--~~~~~ll~~~~iD~V~Iatp~~~H~e~~~~AL~aGkhVl~EKPla~t~~ea~~l~~~ 113 (342)
T COG0673 39 DPERAEAFAEEFGIA---KAY--TDLEELLADPDIDAVYIATPNALHAELALAALEAGKHVLCEKPLALTLEEAEELVEL 113 (342)
T ss_pred CHHHHHHHHHHcCCC---ccc--CCHHHHhcCCCCCEEEEcCCChhhHHHHHHHHhcCCEEEEcCCCCCCHHHHHHHHHH
Confidence 344588899999998 222 2344 4444559999999999999999999999999999999999999999998887
Q ss_pred HHhc
Q psy17999 129 VKQY 132 (335)
Q Consensus 129 i~~g 132 (335)
-++.
T Consensus 114 a~~~ 117 (342)
T COG0673 114 ARKA 117 (342)
T ss_pred HHHc
Confidence 7763
No 95
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=94.45 E-value=1.1 Score=44.57 Aligned_cols=41 Identities=29% Similarity=0.527 Sum_probs=31.9
Q ss_pred HHHHHHHHCCCCCeecCCCCC-C--hHHHHHHHHcCCcEEEeccCCC
Q psy17999 179 VIHTLRSRYPDIPIGYSGHEN-G--VHVCYAAVAMGAQIIEKHFTLD 222 (335)
Q Consensus 179 ~i~~L~~~fp~~pVG~SdHt~-g--~~~~~aAvalGA~vIEkH~tld 222 (335)
.+..+++.+ ++||++-.|.. | ..-+++|+..||+.|+ .|+.
T Consensus 176 lv~~l~~~~-~v~l~~H~HNd~GlA~ANalaA~~aGa~~vd--~tl~ 219 (365)
T TIGR02660 176 LVRALRQAV-DLPLEMHAHNDLGMATANTLAAVRAGATHVN--TTVN 219 (365)
T ss_pred HHHHHHHhc-CCeEEEEecCCCChHHHHHHHHHHhCCCEEE--EEee
Confidence 367888888 79999988753 4 5567899999999987 4544
No 96
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=94.35 E-value=0.66 Score=46.23 Aligned_cols=121 Identities=12% Similarity=0.131 Sum_probs=68.9
Q ss_pred CChhhHHHHHhCCCCEEEEc--CCC--------CCCH-------HHHHHHHhcCCcEE--EeC-------CCCCCHHHHH
Q psy17999 70 MDQVSFDFLLSANVPFIKIG--SGD--------SNNI-------PLIKYAASKQKPLI--IST-------GMLPSIEHVD 123 (335)
Q Consensus 70 fd~~svd~l~~l~v~~~KIa--S~d--------~~n~-------~LL~~~a~~gkPvi--lSt-------G~~~tl~Ei~ 123 (335)
...++++.+.+.|++.+-|. ..+ .+-- ++++++-+.|+.|. +|+ |.. +++.+.
T Consensus 122 ~n~~die~A~~~g~~~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~~fg~p~~~r~-~~~~l~ 200 (347)
T PLN02746 122 PNLKGFEAAIAAGAKEVAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGYVSCVVGCPIEGPV-PPSKVA 200 (347)
T ss_pred CCHHHHHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeecCCccCCC-CHHHHH
Confidence 36666666666666654443 211 1111 22233333466554 443 444 666666
Q ss_pred HHHHHHHh-cCCCCceeecccCCCCCCCCcccccCceEEeeecCCCCCCccCCCchHHHHHHHHCCCCCeecCCCCC-C-
Q psy17999 124 NIYTTVKQ-YHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYPTPYHDINLNVIHTLRSRYPDIPIGYSGHEN-G- 200 (335)
Q Consensus 124 ~Av~~i~~-g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~s~YP~~~~~~nL~~i~~L~~~fp~~pVG~SdHt~-g- 200 (335)
+.++.+.. |-. .|-+|+. ..+-+|.+-..| +..|++.||..+|++=.|.. |
T Consensus 201 ~~~~~~~~~Gad--~I~l~DT----------------------~G~a~P~~v~~l--v~~l~~~~~~~~i~~H~Hnd~Gl 254 (347)
T PLN02746 201 YVAKELYDMGCY--EISLGDT----------------------IGVGTPGTVVPM--LEAVMAVVPVDKLAVHFHDTYGQ 254 (347)
T ss_pred HHHHHHHHcCCC--EEEecCC----------------------cCCcCHHHHHHH--HHHHHHhCCCCeEEEEECCCCCh
Confidence 66666555 443 3444443 233334433333 67788889666899977754 4
Q ss_pred -hHHHHHHHHcCCcEEEe
Q psy17999 201 -VHVCYAAVAMGAQIIEK 217 (335)
Q Consensus 201 -~~~~~aAvalGA~vIEk 217 (335)
..-+++|+..||++|+-
T Consensus 255 A~AN~lAA~~aGa~~vd~ 272 (347)
T PLN02746 255 ALANILVSLQMGISTVDS 272 (347)
T ss_pred HHHHHHHHHHhCCCEEEE
Confidence 55578999999999984
No 97
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=94.28 E-value=0.58 Score=48.39 Aligned_cols=146 Identities=16% Similarity=0.140 Sum_probs=92.4
Q ss_pred cCCHHHHHHHHHHHHHcCCceEecc-------CChhh-----HHHHHhCCCCEEEEcCCCCCCHHHHHHHH----hcCCc
Q psy17999 45 EFSQEEYVMLQQCADQVDIMFTASA-------MDQVS-----FDFLLSANVPFIKIGSGDSNNIPLIKYAA----SKQKP 108 (335)
Q Consensus 45 el~~e~~~~L~~~~~~~Gi~f~stp-------fd~~s-----vd~l~~l~v~~~KIaS~d~~n~~LL~~~a----~~gkP 108 (335)
|=++|.++.+++...+..+..++.- ..++. ++...+.|++++.|.. .+|+.+-++... +.|+-
T Consensus 69 edpwerlr~~r~~~~nt~lqmLlRG~n~vgy~~ypddvv~~fv~~a~~~Gidi~Rifd-~lnd~~n~~~ai~~ak~~G~~ 147 (468)
T PRK12581 69 EDPWERLRTLKKGLPNTRLQMLLRGQNLLGYRHYADDIVDKFISLSAQNGIDVFRIFD-ALNDPRNIQQALRAVKKTGKE 147 (468)
T ss_pred CCHHHHHHHHHHhCCCCceeeeeccccccCccCCcchHHHHHHHHHHHCCCCEEEEcc-cCCCHHHHHHHHHHHHHcCCE
Confidence 4566777777777766666655543 22233 6777788999999998 566776665533 45766
Q ss_pred EEEeCCC--CC--CHHHHHHHHHHHHh-cCCCCceeecccCCCCCCCCcccccCceEEeeecCCCCCCccCCCchHHHHH
Q psy17999 109 LIISTGM--LP--SIEHVDNIYTTVKQ-YHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYPTPYHDINLNVIHTL 183 (335)
Q Consensus 109 vilStG~--~~--tl~Ei~~Av~~i~~-g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~s~YP~~~~~~nL~~i~~L 183 (335)
+.+.-+. ++ |++-+.+.++.+.+ |.. .|-+|+.. ..=+|..-.+| +..|
T Consensus 148 ~~~~i~yt~sp~~t~~y~~~~a~~l~~~Gad--~I~IkDta----------------------G~l~P~~v~~L--v~al 201 (468)
T PRK12581 148 AQLCIAYTTSPVHTLNYYLSLVKELVEMGAD--SICIKDMA----------------------GILTPKAAKEL--VSGI 201 (468)
T ss_pred EEEEEEEEeCCcCcHHHHHHHHHHHHHcCCC--EEEECCCC----------------------CCcCHHHHHHH--HHHH
Confidence 4444332 21 55666666666666 654 45555542 22233333333 6677
Q ss_pred HHHCCCCCeecCCCCC-C--hHHHHHHHHcCCcEEEec
Q psy17999 184 RSRYPDIPIGYSGHEN-G--VHVCYAAVAMGAQIIEKH 218 (335)
Q Consensus 184 ~~~fp~~pVG~SdHt~-g--~~~~~aAvalGA~vIEkH 218 (335)
|+. +++||++=.|.. | ....++|+..||++|+-=
T Consensus 202 k~~-~~~pi~~H~Hnt~GlA~An~laAieAGad~vD~a 238 (468)
T PRK12581 202 KAM-TNLPLIVHTHATSGISQMTYLAAVEAGADRIDTA 238 (468)
T ss_pred Hhc-cCCeEEEEeCCCCccHHHHHHHHHHcCCCEEEee
Confidence 774 499999988864 4 566789999999998843
No 98
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=94.26 E-value=1.6 Score=40.91 Aligned_cols=162 Identities=20% Similarity=0.187 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHHHcCCceEe--ccCChhhHHHHHhCCCCEEEEcCCCCCCHHHHHHHHhc-C-CcEEEeCCCC-------
Q psy17999 48 QEEYVMLQQCADQVDIMFTA--SAMDQVSFDFLLSANVPFIKIGSGDSNNIPLIKYAASK-Q-KPLIISTGML------- 116 (335)
Q Consensus 48 ~e~~~~L~~~~~~~Gi~f~s--tpfd~~svd~l~~l~v~~~KIaS~d~~n~~LL~~~a~~-g-kPvilStG~~------- 116 (335)
...+..+++.++..+++++. -..+.+.++.+.+.|++.+-|++.-+.|..+++++++. | --+++|...-
T Consensus 60 ~~~~~~i~~i~~~~~ipv~~~GGi~s~~~~~~~l~~Ga~~Viigt~~l~~p~~~~ei~~~~g~~~iv~slD~~~~~~~~~ 139 (253)
T PRK02083 60 DTMLDVVERVAEQVFIPLTVGGGIRSVEDARRLLRAGADKVSINSAAVANPELISEAADRFGSQCIVVAIDAKRDPEPGR 139 (253)
T ss_pred cchHHHHHHHHHhCCCCEEeeCCCCCHHHHHHHHHcCCCEEEEChhHhhCcHHHHHHHHHcCCCCEEEEEEeccCCCCCC
Confidence 45677888888888888877 56889999888889999999999999999999998875 2 1245554210
Q ss_pred ----------CCHHHHHHHHHHHHh-cCCCCceeecccCCCCCCCCcccccCceEEeeecCCCCCCccCCCchHHHHHHH
Q psy17999 117 ----------PSIEHVDNIYTTVKQ-YHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYPTPYHDINLNVIHTLRS 185 (335)
Q Consensus 117 ----------~tl~Ei~~Av~~i~~-g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~s~YP~~~~~~nL~~i~~L~~ 185 (335)
.+-......++.+.+ |. .-.++|-++.-.+. ...|+..+..+++
T Consensus 140 ~~v~~~~~~~~~~~~~~~~~~~~~~~g~------------------------~~ii~~~i~~~g~~-~g~d~~~i~~~~~ 194 (253)
T PRK02083 140 WEVYTHGGRKPTGLDAVEWAKEVEELGA------------------------GEILLTSMDRDGTK-NGYDLELTRAVSD 194 (253)
T ss_pred EEEEEcCCceecCCCHHHHHHHHHHcCC------------------------CEEEEcCCcCCCCC-CCcCHHHHHHHHh
Confidence 000111222222222 32 22344333322222 3458999999999
Q ss_pred HCCCCCeecCCCCCChHHHHHHHH-cCCc-EEEeccCCCCCCCCCCCCCCCCHHHHHHHHH
Q psy17999 186 RYPDIPIGYSGHENGVHVCYAAVA-MGAQ-IIEKHFTLDKSWKGSDHASSLTPPELKALVT 244 (335)
Q Consensus 186 ~fp~~pVG~SdHt~g~~~~~aAva-lGA~-vIEkH~tld~~~~G~Dh~~Sl~p~el~~lv~ 244 (335)
.. ++||-.++.-....-...+.. .||+ ++=-. ..|.-.+++.++++.++
T Consensus 195 ~~-~ipvia~GGv~s~~d~~~~~~~~G~~gvivg~---------al~~~~~~~~~~~~~~~ 245 (253)
T PRK02083 195 AV-NVPVIASGGAGNLEHFVEAFTEGGADAALAAS---------IFHFGEITIGELKAYLA 245 (253)
T ss_pred hC-CCCEEEECCCCCHHHHHHHHHhCCccEEeEhH---------HHHcCCCCHHHHHHHHH
Confidence 88 799988876655444444454 5886 33211 12334566777766554
No 99
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=94.24 E-value=0.56 Score=49.87 Aligned_cols=115 Identities=13% Similarity=0.191 Sum_probs=78.0
Q ss_pred hHHHHHhCCCCEEEEcCCCCCCHHH----HHHHHhcCCcE--EEe---CCCCCCHHHHHHHHHHHHh-cCCCCceeeccc
Q psy17999 74 SFDFLLSANVPFIKIGSGDSNNIPL----IKYAASKQKPL--IIS---TGMLPSIEHVDNIYTTVKQ-YHSNLSILHCVS 143 (335)
Q Consensus 74 svd~l~~l~v~~~KIaS~d~~n~~L----L~~~a~~gkPv--ilS---tG~~~tl~Ei~~Av~~i~~-g~~~~~~~~c~~ 143 (335)
.++...+.|++.+-|.. .+++.+. ++++.+.|+-+ -|+ .... |++.+.+.++.+.. |.. .|-+|+.
T Consensus 102 ~v~~a~~~Gid~~rifd-~lnd~~~~~~ai~~ak~~G~~~~~~i~yt~~p~~-~~~~~~~~a~~l~~~Gad--~i~i~Dt 177 (593)
T PRK14040 102 FVERAVKNGMDVFRVFD-AMNDPRNLETALKAVRKVGAHAQGTLSYTTSPVH-TLQTWVDLAKQLEDMGVD--SLCIKDM 177 (593)
T ss_pred HHHHHHhcCCCEEEEee-eCCcHHHHHHHHHHHHHcCCeEEEEEEEeeCCcc-CHHHHHHHHHHHHHcCCC--EEEECCC
Confidence 37777888999999984 5555553 34444567753 233 3345 78888888887777 654 5556655
Q ss_pred CCCCCCCCcccccCceEEeeecCCCCCCccCCCchHHHHHHHHCCCCCeecCCCCC-C--hHHHHHHHHcCCcEEEe
Q psy17999 144 AYPTPYPTVKQYHSNLSILHCVSAYPTPYHDINLNVIHTLRSRYPDIPIGYSGHEN-G--VHVCYAAVAMGAQIIEK 217 (335)
Q Consensus 144 g~~~~~~~~~~~~~~l~llHC~s~YP~~~~~~nL~~i~~L~~~fp~~pVG~SdHt~-g--~~~~~aAvalGA~vIEk 217 (335)
. ..=+|..-.+| +..||+.+ ++|||+=.|.. | ....++|+..||++|.-
T Consensus 178 ~----------------------G~l~P~~~~~l--v~~lk~~~-~~pi~~H~Hnt~GlA~An~laAieAGa~~vD~ 229 (593)
T PRK14040 178 A----------------------GLLKPYAAYEL--VSRIKKRV-DVPLHLHCHATTGLSTATLLKAIEAGIDGVDT 229 (593)
T ss_pred C----------------------CCcCHHHHHHH--HHHHHHhc-CCeEEEEECCCCchHHHHHHHHHHcCCCEEEe
Confidence 2 22233333333 77889999 89999988864 4 55678999999998874
No 100
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=94.24 E-value=2.6 Score=38.57 Aligned_cols=111 Identities=22% Similarity=0.266 Sum_probs=68.4
Q ss_pred hhHHHHHhCCCCEEEEcCCCC------CCHHHHHHHHhcC-CcEEEeCCCCCCHHHHHHHHHHHHhcCCCCceee-cccC
Q psy17999 73 VSFDFLLSANVPFIKIGSGDS------NNIPLIKYAASKQ-KPLIISTGMLPSIEHVDNIYTTVKQYHSNLSILH-CVSA 144 (335)
Q Consensus 73 ~svd~l~~l~v~~~KIaS~d~------~n~~LL~~~a~~g-kPvilStG~~~tl~Ei~~Av~~i~~g~~~~~~~~-c~~g 144 (335)
+.++.+.+.|++++-+..... ....+++++.+.+ .|+++ +.. |.+|...+.+. |.. ++. ..+|
T Consensus 83 ~~~~~a~~aGad~I~~~~~~~~~p~~~~~~~~i~~~~~~g~~~iiv--~v~-t~~ea~~a~~~---G~d---~i~~~~~g 153 (219)
T cd04729 83 EEVDALAAAGADIIALDATDRPRPDGETLAELIKRIHEEYNCLLMA--DIS-TLEEALNAAKL---GFD---IIGTTLSG 153 (219)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCCCCCcCHHHHHHHHHHHhCCeEEE--ECC-CHHHHHHHHHc---CCC---EEEccCcc
Confidence 367888899999988876553 5567888888887 77777 445 88887665442 322 111 0111
Q ss_pred CCCCCCCcccccCceEEeeecCCCCCCccCCCchHHHHHHHHCCCCCeecCCCCCChHHHHHHHHcCCc
Q psy17999 145 YPTPYPTVKQYHSNLSILHCVSAYPTPYHDINLNVIHTLRSRYPDIPIGYSGHENGVHVCYAAVAMGAQ 213 (335)
Q Consensus 145 ~~~~~~~~~~~~~~l~llHC~s~YP~~~~~~nL~~i~~L~~~fp~~pVG~SdHt~g~~~~~aAvalGA~ 213 (335)
. +.--......++..+..+++.+ ++||.-.+--....-...+.++||+
T Consensus 154 ~--------------------t~~~~~~~~~~~~~l~~i~~~~-~ipvia~GGI~~~~~~~~~l~~Gad 201 (219)
T cd04729 154 Y--------------------TEETAKTEDPDFELLKELRKAL-GIPVIAEGRINSPEQAAKALELGAD 201 (219)
T ss_pred c--------------------cccccCCCCCCHHHHHHHHHhc-CCCEEEeCCCCCHHHHHHHHHCCCC
Confidence 1 0000011235678899999988 8998543322224555667788988
No 101
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=94.20 E-value=2.4 Score=39.34 Aligned_cols=141 Identities=21% Similarity=0.202 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHHcCCceEec--cCChhhHHHHHhCCCCEEEEcCCCCCCHHHHHHHHhc-CC-cEEEeC----------
Q psy17999 48 QEEYVMLQQCADQVDIMFTAS--AMDQVSFDFLLSANVPFIKIGSGDSNNIPLIKYAASK-QK-PLIIST---------- 113 (335)
Q Consensus 48 ~e~~~~L~~~~~~~Gi~f~st--pfd~~svd~l~~l~v~~~KIaS~d~~n~~LL~~~a~~-gk-PvilSt---------- 113 (335)
...+..+.+.+++.+++++.. +.+.+++..+.+.|++.+-+++.-+.|+.+++++.+. +. -+++|.
T Consensus 57 ~~~~~~i~~i~~~~~~pv~~~GGI~s~~d~~~~l~~G~~~v~ig~~~~~~p~~~~~i~~~~~~~~i~~~ld~k~~~~~~~ 136 (243)
T cd04731 57 ETMLDVVERVAEEVFIPLTVGGGIRSLEDARRLLRAGADKVSINSAAVENPELIREIAKRFGSQCVVVSIDAKRRGDGGY 136 (243)
T ss_pred cccHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCceEEECchhhhChHHHHHHHHHcCCCCEEEEEEeeecCCCce
Confidence 345677777788888777765 5888898888888999999999999999999988773 22 144442
Q ss_pred ------CCCCCHHHHHHHHHHHHhcCCCCceeecccCCCCCCCCcccccCceEEeeecCCCCCCccCCCchHHHHHHHHC
Q psy17999 114 ------GMLPSIEHVDNIYTTVKQYHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYPTPYHDINLNVIHTLRSRY 187 (335)
Q Consensus 114 ------G~~~tl~Ei~~Av~~i~~g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~s~YP~~~~~~nL~~i~~L~~~f 187 (335)
+...+..+....+..+...+. +..++|..+.-.+. +-.|+..+..+++..
T Consensus 137 ~v~~~~~~~~~~~~~~~~~~~l~~~G~-----------------------d~i~v~~i~~~g~~-~g~~~~~i~~i~~~~ 192 (243)
T cd04731 137 EVYTHGGRKPTGLDAVEWAKEVEELGA-----------------------GEILLTSMDRDGTK-KGYDLELIRAVSSAV 192 (243)
T ss_pred EEEEcCCceecCCCHHHHHHHHHHCCC-----------------------CEEEEeccCCCCCC-CCCCHHHHHHHHhhC
Confidence 111112222222233333222 56677776544332 446899999999887
Q ss_pred CCCCeecCCCCCChHHHHHHHHc-CCc
Q psy17999 188 PDIPIGYSGHENGVHVCYAAVAM-GAQ 213 (335)
Q Consensus 188 p~~pVG~SdHt~g~~~~~aAval-GA~ 213 (335)
++||..++--....-...+... ||+
T Consensus 193 -~~pvia~GGi~~~~di~~~l~~~g~d 218 (243)
T cd04731 193 -NIPVIASGGAGKPEHFVEAFEEGGAD 218 (243)
T ss_pred -CCCEEEeCCCCCHHHHHHHHHhCCCC
Confidence 8999888766555555555555 886
No 102
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=94.16 E-value=0.66 Score=44.44 Aligned_cols=129 Identities=16% Similarity=0.202 Sum_probs=79.9
Q ss_pred CCceEeccCChhhHHHHHhCCCCEEEEc--CCCC--------C---C----HHHHHHHHhcCCcEEE----eC-----CC
Q psy17999 62 DIMFTASAMDQVSFDFLLSANVPFIKIG--SGDS--------N---N----IPLIKYAASKQKPLII----ST-----GM 115 (335)
Q Consensus 62 Gi~f~stpfd~~svd~l~~l~v~~~KIa--S~d~--------~---n----~~LL~~~a~~gkPvil----St-----G~ 115 (335)
+..+.+-+-..+.++.+.+.+++.+-+. ..+. + + ...++++-+.|+-+.+ +. |.
T Consensus 66 ~~~~~~~~~~~~dv~~A~~~g~~~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~f~~~~~~~ 145 (274)
T cd07938 66 GVRYSALVPNLRGAERALAAGVDEVAVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGLRVRGYVSTAFGCPYEGE 145 (274)
T ss_pred CCEEEEECCCHHHHHHHHHcCcCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeEecCCCCCC
Confidence 4554444456777888888887765443 3331 0 0 1224444455766643 12 34
Q ss_pred CCCHHHHHHHHHHHHh-cCCCCceeecccCCCCCCCCcccccCceEEeeecCCCCCCccCCCchHHHHHHHHCCCCCeec
Q psy17999 116 LPSIEHVDNIYTTVKQ-YHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYPTPYHDINLNVIHTLRSRYPDIPIGY 194 (335)
Q Consensus 116 ~~tl~Ei~~Av~~i~~-g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~s~YP~~~~~~nL~~i~~L~~~fp~~pVG~ 194 (335)
. +++.+.+.++.+.. |-. .|-+|+.. .+-+|..-.++ +..|++.+|++|||+
T Consensus 146 ~-~~~~~~~~~~~~~~~Ga~--~i~l~DT~----------------------G~~~P~~v~~l--v~~l~~~~~~~~i~~ 198 (274)
T cd07938 146 V-PPERVAEVAERLLDLGCD--EISLGDTI----------------------GVATPAQVRRL--LEAVLERFPDEKLAL 198 (274)
T ss_pred C-CHHHHHHHHHHHHHcCCC--EEEECCCC----------------------CccCHHHHHHH--HHHHHHHCCCCeEEE
Confidence 5 77778777777766 543 34444432 23334433333 778899998899999
Q ss_pred CCCCC-C--hHHHHHHHHcCCcEEEe
Q psy17999 195 SGHEN-G--VHVCYAAVAMGAQIIEK 217 (335)
Q Consensus 195 SdHt~-g--~~~~~aAvalGA~vIEk 217 (335)
=.|.. | ..-+++|+..||++|+-
T Consensus 199 H~Hnd~GlA~AN~laA~~aGa~~id~ 224 (274)
T cd07938 199 HFHDTRGQALANILAALEAGVRRFDS 224 (274)
T ss_pred EECCCCChHHHHHHHHHHhCCCEEEE
Confidence 87764 4 55678999999999983
No 103
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=94.10 E-value=0.43 Score=47.39 Aligned_cols=81 Identities=12% Similarity=0.208 Sum_probs=65.0
Q ss_pred cCCHHHHHHHHHHHHHcCCceEeccCChhhHHHHHhC-CCCEEEEcCCCCCCH----HHHHHHHh-c---CCc----EEE
Q psy17999 45 EFSQEEYVMLQQCADQVDIMFTASAMDQVSFDFLLSA-NVPFIKIGSGDSNNI----PLIKYAAS-K---QKP----LII 111 (335)
Q Consensus 45 el~~e~~~~L~~~~~~~Gi~f~stpfd~~svd~l~~l-~v~~~KIaS~d~~n~----~LL~~~a~-~---gkP----vil 111 (335)
-|+.+++.+|.++|+++|+..+.+++|++.++...++ |+++|=|-.+|+..+ ..-..++. . ..| +++
T Consensus 213 iL~~~~L~~l~~~A~~LGme~LVEVH~~~ElerAl~~~ga~iIGINNRdL~Tf~vDl~~t~~L~~~~~~~~i~~~~~~~V 292 (338)
T PLN02460 213 VLPDLDIKYMLKICKSLGMAALIEVHDEREMDRVLGIEGVELIGINNRSLETFEVDISNTKKLLEGERGEQIREKGIIVV 292 (338)
T ss_pred hCCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhcCCCCEEEEeCCCCCcceECHHHHHHHhhhccccccCCCCeEEE
Confidence 3788999999999999999999999999999999998 999999999998643 33333433 0 122 445
Q ss_pred e-CCCCCCHHHHHHHH
Q psy17999 112 S-TGMLPSIEHVDNIY 126 (335)
Q Consensus 112 S-tG~~~tl~Ei~~Av 126 (335)
| .|.. |.+++....
T Consensus 293 sESGI~-t~~Dv~~l~ 307 (338)
T PLN02460 293 GESGLF-TPDDVAYVQ 307 (338)
T ss_pred ECCCCC-CHHHHHHHH
Confidence 5 9999 999998654
No 104
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=94.10 E-value=0.89 Score=48.44 Aligned_cols=144 Identities=16% Similarity=0.160 Sum_probs=97.9
Q ss_pred cCCHHHHHHHHHHHHHcCCceEe--------ccCChh----hHHHHHhCCCCEEEEcCCCCCCHHHHHH----HHhcCCc
Q psy17999 45 EFSQEEYVMLQQCADQVDIMFTA--------SAMDQV----SFDFLLSANVPFIKIGSGDSNNIPLIKY----AASKQKP 108 (335)
Q Consensus 45 el~~e~~~~L~~~~~~~Gi~f~s--------tpfd~~----svd~l~~l~v~~~KIaS~d~~n~~LL~~----~a~~gkP 108 (335)
|=++|-++.+++...+.-+..+. +++..+ -++...+.|+|++.|.. .+|+.+-++. +.+.|+-
T Consensus 60 edpwerl~~~r~~~pnt~lqmL~Rg~N~vGy~~~~d~vv~~~v~~a~~~Gidv~Rifd-~lnd~~n~~~~i~~~k~~G~~ 138 (596)
T PRK14042 60 EDPWSRLRQLRQALPNTQLSMLLRGQNLLGYRNYADDVVRAFVKLAVNNGVDVFRVFD-ALNDARNLKVAIDAIKSHKKH 138 (596)
T ss_pred CCHHHHHHHHHHhCCCCceEEEeccccccccccCChHHHHHHHHHHHHcCCCEEEEcc-cCcchHHHHHHHHHHHHcCCE
Confidence 56778888888888877777776 223322 34556678999999987 6777766654 3445664
Q ss_pred EEEe---CC--CCCCHHHHHHHHHHHHh-cCCCCceeecccCCCCCCCCcccccCceEEeeecCCCCCCccCCCchHHHH
Q psy17999 109 LIIS---TG--MLPSIEHVDNIYTTVKQ-YHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYPTPYHDINLNVIHT 182 (335)
Q Consensus 109 vilS---tG--~~~tl~Ei~~Av~~i~~-g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~s~YP~~~~~~nL~~i~~ 182 (335)
+... |+ +. |++.+.+.++.+.. |.. .|-+|+.. ..=+|..-.. .+..
T Consensus 139 ~~~~i~yt~sp~~-t~e~~~~~ak~l~~~Gad--~I~IkDta----------------------G~l~P~~v~~--lv~a 191 (596)
T PRK14042 139 AQGAICYTTSPVH-TLDNFLELGKKLAEMGCD--SIAIKDMA----------------------GLLTPTVTVE--LYAG 191 (596)
T ss_pred EEEEEEecCCCCC-CHHHHHHHHHHHHHcCCC--EEEeCCcc----------------------cCCCHHHHHH--HHHH
Confidence 3322 34 66 99999998888887 654 45555542 2223333233 3678
Q ss_pred HHHHCCCCCeecCCCCC-C--hHHHHHHHHcCCcEEEe
Q psy17999 183 LRSRYPDIPIGYSGHEN-G--VHVCYAAVAMGAQIIEK 217 (335)
Q Consensus 183 L~~~fp~~pVG~SdHt~-g--~~~~~aAvalGA~vIEk 217 (335)
||+.+ ++||++=.|.. | ....++|+..||++|.-
T Consensus 192 lk~~~-~ipi~~H~Hnt~Gla~an~laAieaGad~iD~ 228 (596)
T PRK14042 192 LKQAT-GLPVHLHSHSTSGLASICHYEAVLAGCNHIDT 228 (596)
T ss_pred HHhhc-CCEEEEEeCCCCCcHHHHHHHHHHhCCCEEEe
Confidence 89998 79999988864 4 55678999999999884
No 105
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=94.07 E-value=2.1 Score=40.45 Aligned_cols=140 Identities=16% Similarity=0.207 Sum_probs=92.6
Q ss_pred CCHHHHHHHHHHHHHcCCceEec--cCChhhHHHHHhCCCCEEEEcCCCCCCHHHHHHHHhc-CC-cEEEe----CC---
Q psy17999 46 FSQEEYVMLQQCADQVDIMFTAS--AMDQVSFDFLLSANVPFIKIGSGDSNNIPLIKYAASK-QK-PLIIS----TG--- 114 (335)
Q Consensus 46 l~~e~~~~L~~~~~~~Gi~f~st--pfd~~svd~l~~l~v~~~KIaS~d~~n~~LL~~~a~~-gk-PvilS----tG--- 114 (335)
.....+..+.+.++..++++... +-+.+.+..+.+.|++.+-|+|.-+.|..+++++++. +. -+++| .|
T Consensus 58 ~~~~n~~~i~~i~~~~~~pv~~gGGi~s~~d~~~l~~~G~~~vvigs~~~~~~~~~~~~~~~~~~~~i~vsiD~k~g~~~ 137 (258)
T PRK01033 58 GSEPNYELIENLASECFMPLCYGGGIKTLEQAKKIFSLGVEKVSINTAALEDPDLITEAAERFGSQSVVVSIDVKKNLGG 137 (258)
T ss_pred CCcccHHHHHHHHHhCCCCEEECCCCCCHHHHHHHHHCCCCEEEEChHHhcCHHHHHHHHHHhCCCcEEEEEEEecCCCC
Confidence 34556788888888888877655 5677888888889999999999999999999998864 21 13332 11
Q ss_pred -----------CC-CCHHHHHHHHHHHHhcCCCCceeecccCCCCCCCCcccccCceEEeeecCCCCCCccCCCchHHHH
Q psy17999 115 -----------ML-PSIEHVDNIYTTVKQYHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYPTPYHDINLNVIHT 182 (335)
Q Consensus 115 -----------~~-~tl~Ei~~Av~~i~~g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~s~YP~~~~~~nL~~i~~ 182 (335)
.+ .++.|+. +.+.+... .-.++|+.+.-=+- .-.|+..+..
T Consensus 138 ~~~v~~~gw~~~~~~~~~e~~---~~~~~~g~-----------------------~~ii~~~i~~~G~~-~G~d~~~i~~ 190 (258)
T PRK01033 138 KFDVYTHNGTKKLKKDPLELA---KEYEALGA-----------------------GEILLNSIDRDGTM-KGYDLELLKS 190 (258)
T ss_pred cEEEEEcCCeecCCCCHHHHH---HHHHHcCC-----------------------CEEEEEccCCCCCc-CCCCHHHHHH
Confidence 01 1233333 33333112 45566766533222 2259999999
Q ss_pred HHHHCCCCCeecCCCCCChHHHHHHH-HcCCc
Q psy17999 183 LRSRYPDIPIGYSGHENGVHVCYAAV-AMGAQ 213 (335)
Q Consensus 183 L~~~fp~~pVG~SdHt~g~~~~~aAv-alGA~ 213 (335)
+++.. ++||..|+--....-...+. ..|++
T Consensus 191 ~~~~~-~ipvIasGGv~s~eD~~~l~~~~Gvd 221 (258)
T PRK01033 191 FRNAL-KIPLIALGGAGSLDDIVEAILNLGAD 221 (258)
T ss_pred HHhhC-CCCEEEeCCCCCHHHHHHHHHHCCCC
Confidence 99986 89998887666554444555 67887
No 106
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=94.06 E-value=0.18 Score=46.23 Aligned_cols=78 Identities=13% Similarity=0.078 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHcCCceEeccCChhhHHHHHhCCCCEEEEc--------CCCCCCHHHHHHHHhcCCcEEEeCCCCCCHH
Q psy17999 49 EEYVMLQQCADQVDIMFTASAMDQVSFDFLLSANVPFIKIG--------SGDSNNIPLIKYAASKQKPLIISTGMLPSIE 120 (335)
Q Consensus 49 e~~~~L~~~~~~~Gi~f~stpfd~~svd~l~~l~v~~~KIa--------S~d~~n~~LL~~~a~~gkPvilStG~~~tl~ 120 (335)
+.+.+|.+..++.+..+|+.+-+.+....+.++|+|++=-- ..+-.|++|++++.+.+.|||..=+-+ |++
T Consensus 79 ~~l~~li~~i~~~~~l~MADist~ee~~~A~~~G~D~I~TTLsGYT~~t~~~~pD~~lv~~l~~~~~pvIaEGri~-tpe 157 (192)
T PF04131_consen 79 ETLEELIREIKEKYQLVMADISTLEEAINAAELGFDIIGTTLSGYTPYTKGDGPDFELVRELVQADVPVIAEGRIH-TPE 157 (192)
T ss_dssp S-HHHHHHHHHHCTSEEEEE-SSHHHHHHHHHTT-SEEE-TTTTSSTTSTTSSHHHHHHHHHHHTTSEEEEESS---SHH
T ss_pred cCHHHHHHHHHHhCcEEeeecCCHHHHHHHHHcCCCEEEcccccCCCCCCCCCCCHHHHHHHHhCCCcEeecCCCC-CHH
Confidence 77889999999999999999999999999999999987321 116678999999999999999999999 999
Q ss_pred HHHHHHH
Q psy17999 121 HVDNIYT 127 (335)
Q Consensus 121 Ei~~Av~ 127 (335)
+..+|++
T Consensus 158 ~a~~al~ 164 (192)
T PF04131_consen 158 QAAKALE 164 (192)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9888865
No 107
>PRK04161 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=93.94 E-value=0.88 Score=44.94 Aligned_cols=95 Identities=15% Similarity=0.108 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHcCCceEeccC--C-----h--------------hhHHHHH--hCCCCEEEEcCCC-------------
Q psy17999 49 EEYVMLQQCADQVDIMFTASAM--D-----Q--------------VSFDFLL--SANVPFIKIGSGD------------- 92 (335)
Q Consensus 49 e~~~~L~~~~~~~Gi~f~stpf--d-----~--------------~svd~l~--~l~v~~~KIaS~d------------- 92 (335)
+..+++-+.|+..||+|+..+- | . +++..+. ++|||.+||...-
T Consensus 144 a~vervg~eC~a~dipf~lE~l~Yd~~~~d~~~~eyak~kP~~V~~amkefs~~~~gvDVlKvEvPvn~~~veG~~~g~~ 223 (329)
T PRK04161 144 AYIERIGSECTAEDIPFFLELLTYDERISDNNSAAYAKLKPHKVNGAMKVFSDKRFGVDVLKVEVPVNMAYVEGFTEGEV 223 (329)
T ss_pred HHHHHHHHHHHHCCCCeEEEEeccCCcccccccHHHHhhChHHHHHHHHHhccCCCCCcEEEEecccccccccccCcccc
Confidence 6788999999999999999864 2 1 1223333 3799999993321
Q ss_pred -CCCHHHHHHHHh----cCCc-EEEeCCCCCCHHHHHHHHHHHHh-cCCCCceeecccCCC
Q psy17999 93 -SNNIPLIKYAAS----KQKP-LIISTGMLPSIEHVDNIYTTVKQ-YHSNLSILHCVSAYP 146 (335)
Q Consensus 93 -~~n~~LL~~~a~----~gkP-vilStG~~~tl~Ei~~Av~~i~~-g~~~~~~~~c~~g~~ 146 (335)
.+--....++.+ ++.| |+||.|. +.+.....+++-.+ |.. -+=+||-|.+=
T Consensus 224 ~yt~~eA~~~f~~~~~~~~~P~i~LSaGV--~~~~F~~~l~~A~~aGa~-fnGvL~GRAtW 281 (329)
T PRK04161 224 VYSQEEAIKAFKDQEAATHLPYIYLSAGV--SAKLFQETLVFAAEAGAQ-FNGVLCGRATW 281 (329)
T ss_pred cccHHHHHHHHHHHhcccCCCEEEEcCCC--CHHHHHHHHHHHHhcCCC-cccEEeehhhh
Confidence 112244344433 5889 5566664 57888888887775 432 22367777643
No 108
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=93.93 E-value=3.3 Score=35.41 Aligned_cols=65 Identities=11% Similarity=0.087 Sum_probs=48.0
Q ss_pred HHHHHHHHHcCCceEeccCChhh-------HHHHHhCCCCEEEEcCCCCC----CHHHHHHHHhc--CCcEEEeCCCC
Q psy17999 52 VMLQQCADQVDIMFTASAMDQVS-------FDFLLSANVPFIKIGSGDSN----NIPLIKYAASK--QKPLIISTGML 116 (335)
Q Consensus 52 ~~L~~~~~~~Gi~f~stpfd~~s-------vd~l~~l~v~~~KIaS~d~~----n~~LL~~~a~~--gkPvilStG~~ 116 (335)
+.+...++..++.++...+.... +.++.+.|++.+.|...... -..+++++.+. +.|++++....
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~d~v~l~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~~ 124 (200)
T cd04722 47 EVLKEVAAETDLPLGVQLAINDAAAAVDIAAAAARAAGADGVEIHGAVGYLAREDLELIRELREAVPDVKVVVKLSPT 124 (200)
T ss_pred cHHHHHHhhcCCcEEEEEccCCchhhhhHHHHHHHHcCCCEEEEeccCCcHHHHHHHHHHHHHHhcCCceEEEEECCC
Confidence 45666677778887776654322 24778899999999999865 46677888776 89999998754
No 109
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=93.85 E-value=1.3 Score=43.85 Aligned_cols=171 Identities=14% Similarity=0.123 Sum_probs=90.1
Q ss_pred cCCceEeccCCh----------hhHHHHHhCC--CCEEEE--c------CCCCCCHHHH----HHHHh-cC-----CcEE
Q psy17999 61 VDIMFTASAMDQ----------VSFDFLLSAN--VPFIKI--G------SGDSNNIPLI----KYAAS-KQ-----KPLI 110 (335)
Q Consensus 61 ~Gi~f~stpfd~----------~svd~l~~l~--v~~~KI--a------S~d~~n~~LL----~~~a~-~g-----kPvi 110 (335)
.+++++.++.-. +-++.+++++ +|++-+ . .+...+...+ +++.+ .+ +||+
T Consensus 136 ~~~pvivsI~~~~~~~~~~~~~d~~~~~~~~~~~ad~lelN~scP~~~g~~~~~~~~~~~eiv~aVr~~~~~~~~~~PV~ 215 (344)
T PRK05286 136 RGIPLGINIGKNKDTPLEDAVDDYLICLEKLYPYADYFTVNISSPNTPGLRDLQYGEALDELLAALKEAQAELHGYVPLL 215 (344)
T ss_pred CCCcEEEEEecCCCCCcccCHHHHHHHHHHHHhhCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHhccccCCceE
Confidence 688888888532 2233344444 777655 2 2334444444 44443 34 8999
Q ss_pred EeCCCCCCHHHHHHHHHHHHhcCCCCceeecccCCCCCCCCcccccCceEEeeecCCCCCC-ccCCCchHHHHHHHHCC-
Q psy17999 111 ISTGMLPSIEHVDNIYTTVKQYHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYPTP-YHDINLNVIHTLRSRYP- 188 (335)
Q Consensus 111 lStG~~~tl~Ei~~Av~~i~~g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~s~YP~~-~~~~nL~~i~~L~~~fp- 188 (335)
++.....+.+|+...++.+...+. +.+.+..++.... .+ ....+..-...|.-+ ...+.|+.+..+++..+
T Consensus 216 vKlsp~~~~~~~~~ia~~l~~~Ga--dgi~~~nt~~~~~-~~----~~~~~~~~~gg~SG~~~~~~~l~~v~~l~~~~~~ 288 (344)
T PRK05286 216 VKIAPDLSDEELDDIADLALEHGI--DGVIATNTTLSRD-GL----KGLPNADEAGGLSGRPLFERSTEVIRRLYKELGG 288 (344)
T ss_pred EEeCCCCCHHHHHHHHHHHHHhCC--cEEEEeCCccccc-cc----cccccCCCCCCcccHHHHHHHHHHHHHHHHHhCC
Confidence 999866577788888888776322 1122221111000 00 000000001122211 13457788999988764
Q ss_pred CCCeecCCCCCChHHHHHHHHcCCcEEEeccCCCCCC--CCCCCCCCCCHHHHHHHHHHHHHHH
Q psy17999 189 DIPIGYSGHENGVHVCYAAVAMGAQIIEKHFTLDKSW--KGSDHASSLTPPELKALVTGIRDIE 250 (335)
Q Consensus 189 ~~pVG~SdHt~g~~~~~aAvalGA~vIEkH~tld~~~--~G~Dh~~Sl~p~el~~lv~~ir~~~ 250 (335)
++||.-++=-....-+...+..||+.+.- -+.. .| |.-++++.+.+++.-
T Consensus 289 ~ipIig~GGI~s~eda~e~l~aGAd~V~v----~~~~~~~g--------P~~~~~i~~~L~~~l 340 (344)
T PRK05286 289 RLPIIGVGGIDSAEDAYEKIRAGASLVQI----YSGLIYEG--------PGLVKEIVRGLARLL 340 (344)
T ss_pred CCCEEEECCCCCHHHHHHHHHcCCCHHHH----HHHHHHhC--------chHHHHHHHHHHHHH
Confidence 58885554444445555566689986652 2221 22 446777776665543
No 110
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=93.82 E-value=0.47 Score=51.32 Aligned_cols=81 Identities=10% Similarity=0.162 Sum_probs=67.2
Q ss_pred CCHHHHHHHHHHHHHcCCceEeccCChhhHHHHHhCCCCEEEEcCCCCCC----HHHHHHHHh---cCCcEEEeCCCCCC
Q psy17999 46 FSQEEYVMLQQCADQVDIMFTASAMDQVSFDFLLSANVPFIKIGSGDSNN----IPLIKYAAS---KQKPLIISTGMLPS 118 (335)
Q Consensus 46 l~~e~~~~L~~~~~~~Gi~f~stpfd~~svd~l~~l~v~~~KIaS~d~~n----~~LL~~~a~---~gkPvilStG~~~t 118 (335)
|+.+++.+|.++|+++|++.+.++.|++.++...+.+.++|=|-.+|+.. ...-++++. .+..+|-..|.. +
T Consensus 144 L~~~~l~~l~~~a~~lGme~LvEvh~~~el~~a~~~ga~iiGINnRdL~tf~vd~~~t~~L~~~ip~~~~~VsESGI~-~ 222 (695)
T PRK13802 144 LDDAQLKHLLDLAHELGMTVLVETHTREEIERAIAAGAKVIGINARNLKDLKVDVNKYNELAADLPDDVIKVAESGVF-G 222 (695)
T ss_pred cCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhCCCCEEEEeCCCCccceeCHHHHHHHHhhCCCCcEEEEcCCCC-C
Confidence 78899999999999999999999999999999999999999999999884 333344443 244455559999 9
Q ss_pred HHHHHHHHH
Q psy17999 119 IEHVDNIYT 127 (335)
Q Consensus 119 l~Ei~~Av~ 127 (335)
.+|+....+
T Consensus 223 ~~d~~~l~~ 231 (695)
T PRK13802 223 AVEVEDYAR 231 (695)
T ss_pred HHHHHHHHH
Confidence 999987654
No 111
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=93.78 E-value=7.3 Score=38.17 Aligned_cols=174 Identities=12% Similarity=0.176 Sum_probs=90.6
Q ss_pred HHHHHHHHcCCceEeccCC--hh----hHHHHHhCCCCEEEEcCCCCCC-------------HHHHHHHHh-cCCcEEEe
Q psy17999 53 MLQQCADQVDIMFTASAMD--QV----SFDFLLSANVPFIKIGSGDSNN-------------IPLIKYAAS-KQKPLIIS 112 (335)
Q Consensus 53 ~L~~~~~~~Gi~f~stpfd--~~----svd~l~~l~v~~~KIaS~d~~n-------------~~LL~~~a~-~gkPvilS 112 (335)
++.+..++.++.++++.+- .+ .+..++++++|++.|-=+.+.+ ..+++++.+ +++||+++
T Consensus 90 ~i~~~~~~~~~pvi~si~g~~~~~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~~~iPv~vK 169 (325)
T cd04739 90 LIRRAKRAVSIPVIASLNGVSAGGWVDYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSAVTIPVAVK 169 (325)
T ss_pred HHHHHHhccCCeEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhccCCCEEEE
Confidence 3443334457888888854 22 2345566789999875432221 356777755 48999999
Q ss_pred CCCCCCHHHHHHHHHHHHh-cCCCCceeecccCCCCCCCCcccccC-ceEEeeecCCCCCCc-cCCCchHHHHHHHHCCC
Q psy17999 113 TGMLPSIEHVDNIYTTVKQ-YHSNLSILHCVSAYPTPYPTVKQYHS-NLSILHCVSAYPTPY-HDINLNVIHTLRSRYPD 189 (335)
Q Consensus 113 tG~~~tl~Ei~~Av~~i~~-g~~~~~~~~c~~g~~~~~~~~~~~~~-~l~llHC~s~YP~~~-~~~nL~~i~~L~~~fp~ 189 (335)
... .+.++...++.+.. |-. -|.+.-+.... ++ |... +. .. ...|..|. ...-|+.+..+++.. +
T Consensus 170 l~p--~~~~~~~~a~~l~~~Gad--gi~~~nt~~~~---~i-d~~~~~~-~~--~~glSG~~~~~~al~~v~~v~~~~-~ 237 (325)
T cd04739 170 LSP--FFSALAHMAKQLDAAGAD--GLVLFNRFYQP---DI-DLETLEV-VP--NLLLSSPAEIRLPLRWIAILSGRV-K 237 (325)
T ss_pred cCC--CccCHHHHHHHHHHcCCC--eEEEEcCcCCC---Cc-cccccce-ec--CCCcCCccchhHHHHHHHHHHccc-C
Confidence 663 34466666666665 433 22222221110 00 0000 00 00 01122222 223467778888777 7
Q ss_pred CCe-ecCCCCCChHHHHHHHHcCCcEEEeccCCCCC--CCCCCCCCCCCHHHHHHHHHHHHHHHH
Q psy17999 190 IPI-GYSGHENGVHVCYAAVAMGAQIIEKHFTLDKS--WKGSDHASSLTPPELKALVTGIRDIEQ 251 (335)
Q Consensus 190 ~pV-G~SdHt~g~~~~~aAvalGA~vIEkH~tld~~--~~G~Dh~~Sl~p~el~~lv~~ir~~~~ 251 (335)
+|| |--+=.. ..-+...+.+||+.+.- . +. ..| |+-+.++.+++.+.-.
T Consensus 238 ipIig~GGI~s-~~Da~e~l~aGA~~Vqv--~--ta~~~~g--------p~~~~~i~~~L~~~l~ 289 (325)
T cd04739 238 ASLAASGGVHD-AEDVVKYLLAGADVVMT--T--SALLRHG--------PDYIGTLLAGLEAWME 289 (325)
T ss_pred CCEEEECCCCC-HHHHHHHHHcCCCeeEE--e--hhhhhcC--------chHHHHHHHHHHHHHH
Confidence 898 4333233 33344455689998772 1 11 123 4477777777765433
No 112
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=93.73 E-value=0.7 Score=48.18 Aligned_cols=145 Identities=12% Similarity=0.117 Sum_probs=89.6
Q ss_pred CCHHHHHHHHHHHHHcCCceEec--------cCC----hhhHHHHHhCCCCEEEEcC--CCCCCHHHH-HHHHhcCCcE-
Q psy17999 46 FSQEEYVMLQQCADQVDIMFTAS--------AMD----QVSFDFLLSANVPFIKIGS--GDSNNIPLI-KYAASKQKPL- 109 (335)
Q Consensus 46 l~~e~~~~L~~~~~~~Gi~f~st--------pfd----~~svd~l~~l~v~~~KIaS--~d~~n~~LL-~~~a~~gkPv- 109 (335)
=++|-++.+++...+..+..++. ++. +..++...+.|+|++.|.- .|+.|.... +.+.+.|+=+
T Consensus 62 dpwerlr~lr~~~~nt~lqmL~Rg~N~vGy~~y~ddvv~~fv~~a~~~Gidi~RIfd~lndv~nl~~ai~~vk~ag~~~~ 141 (499)
T PRK12330 62 DPWERLRTFRKLMPNSRLQMLLRGQNLLGYRHYEDEVVDRFVEKSAENGMDVFRVFDALNDPRNLEHAMKAVKKVGKHAQ 141 (499)
T ss_pred CHHHHHHHHHHhCCCCeEEEEEcccccCCccCcchhHHHHHHHHHHHcCCCEEEEEecCChHHHHHHHHHHHHHhCCeEE
Confidence 34455555555555666666663 222 3456677778999987763 344444333 3333456533
Q ss_pred --EEe--CCCCCCHHHHHHHHHHHHh-cCCCCceeecccCCCCCCCCcccccCceEEeeecCCCCCCccCCCchHHHHHH
Q psy17999 110 --IIS--TGMLPSIEHVDNIYTTVKQ-YHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYPTPYHDINLNVIHTLR 184 (335)
Q Consensus 110 --ilS--tG~~~tl~Ei~~Av~~i~~-g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~s~YP~~~~~~nL~~i~~L~ 184 (335)
|.= .... |++.+.+.++.+.. |.. .|-+|+.. ..=+|..-.+| +..||
T Consensus 142 ~~i~yt~sp~~-t~e~~~~~a~~l~~~Gad--~I~IkDta----------------------Gll~P~~~~~L--V~~Lk 194 (499)
T PRK12330 142 GTICYTVSPIH-TVEGFVEQAKRLLDMGAD--SICIKDMA----------------------ALLKPQPAYDI--VKGIK 194 (499)
T ss_pred EEEEEecCCCC-CHHHHHHHHHHHHHcCCC--EEEeCCCc----------------------cCCCHHHHHHH--HHHHH
Confidence 211 2356 89998888887777 654 44444432 23334433333 77889
Q ss_pred HHCC-CCCeecCCCCC-C--hHHHHHHHHcCCcEEEe
Q psy17999 185 SRYP-DIPIGYSGHEN-G--VHVCYAAVAMGAQIIEK 217 (335)
Q Consensus 185 ~~fp-~~pVG~SdHt~-g--~~~~~aAvalGA~vIEk 217 (335)
+.+| ++||++=.|.. | ....++|+..||++|+-
T Consensus 195 ~~~~~~ipI~~H~Hnt~GlA~An~laAieAGad~vDt 231 (499)
T PRK12330 195 EACGEDTRINLHCHSTTGVTLVSLMKAIEAGVDVVDT 231 (499)
T ss_pred HhCCCCCeEEEEeCCCCCcHHHHHHHHHHcCCCEEEe
Confidence 9996 89999988864 4 55678999999999884
No 113
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=93.70 E-value=1.3 Score=39.92 Aligned_cols=79 Identities=9% Similarity=0.117 Sum_probs=53.5
Q ss_pred CCHHHHHHHHHHHHHcCCceE---eccCCh-hhHHHHHhCCCCEEEEcCC------CCCCHHHHHHHHhc-CCcEEEeCC
Q psy17999 46 FSQEEYVMLQQCADQVDIMFT---ASAMDQ-VSFDFLLSANVPFIKIGSG------DSNNIPLIKYAASK-QKPLIISTG 114 (335)
Q Consensus 46 l~~e~~~~L~~~~~~~Gi~f~---stpfd~-~svd~l~~l~v~~~KIaS~------d~~n~~LL~~~a~~-gkPvilStG 114 (335)
.+.....++.++|+++|+.++ .+|.+. +.+..+.++|++++++..+ .-..++.++++.+. ..|.|.-+|
T Consensus 86 ~~~~~~~~~i~~~~~~g~~~~~~~~~~~t~~~~~~~~~~~g~d~v~~~pg~~~~~~~~~~~~~i~~l~~~~~~~~i~v~G 165 (206)
T TIGR03128 86 ADDATIKGAVKAAKKHGKEVQVDLINVKDKVKRAKELKELGADYIGVHTGLDEQAKGQNPFEDLQTILKLVKEARVAVAG 165 (206)
T ss_pred CCHHHHHHHHHHHHHcCCEEEEEecCCCChHHHHHHHHHcCCCEEEEcCCcCcccCCCCCHHHHHHHHHhcCCCcEEEEC
Confidence 344567889999999999998 455553 5666677889999999643 12345566666653 345555457
Q ss_pred CCCCHHHHHHH
Q psy17999 115 MLPSIEHVDNI 125 (335)
Q Consensus 115 ~~~tl~Ei~~A 125 (335)
+- +.+.+...
T Consensus 166 GI-~~~n~~~~ 175 (206)
T TIGR03128 166 GI-NLDTIPDV 175 (206)
T ss_pred Cc-CHHHHHHH
Confidence 66 77776654
No 114
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=93.62 E-value=4.5 Score=38.63 Aligned_cols=164 Identities=17% Similarity=0.249 Sum_probs=98.2
Q ss_pred HHHHHHHHH-HcCCceEeccCChhhHHHHHhC--CCCEEEEcCCCC-CCHHHHHHHHhcCCcEEEe----CCCCCCHHH-
Q psy17999 51 YVMLQQCAD-QVDIMFTASAMDQVSFDFLLSA--NVPFIKIGSGDS-NNIPLIKYAASKQKPLIIS----TGMLPSIEH- 121 (335)
Q Consensus 51 ~~~L~~~~~-~~Gi~f~stpfd~~svd~l~~l--~v~~~KIaS~d~-~n~~LL~~~a~~gkPvilS----tG~~~tl~E- 121 (335)
+.++.+..+ ..++++...-++++.++...+. |.++|==-|++. ....+++-+++.|.|+|+- .|+.-|.++
T Consensus 57 ~~~~v~~l~~~~~~plsIDT~~~~v~eaaL~~~~G~~iINsIs~~~~~~~~~~~l~~~~g~~vv~m~~~~~g~P~t~~~~ 136 (261)
T PRK07535 57 MEWLVETVQEVVDVPLCIDSPNPAAIEAGLKVAKGPPLINSVSAEGEKLEVVLPLVKKYNAPVVALTMDDTGIPKDAEDR 136 (261)
T ss_pred HHHHHHHHHHhCCCCEEEeCCCHHHHHHHHHhCCCCCEEEeCCCCCccCHHHHHHHHHhCCCEEEEecCCCCCCCCHHHH
Confidence 444444443 3599999999999999999887 889876666653 2456778788889999974 344435544
Q ss_pred ---HHHHHHHHHh-cCCCCceeecccCCCCCCCCcccccCceEEeeecCCCCCCccCCC---chHHHHHHHHCCCCCe--
Q psy17999 122 ---VDNIYTTVKQ-YHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYPTPYHDIN---LNVIHTLRSRYPDIPI-- 192 (335)
Q Consensus 122 ---i~~Av~~i~~-g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~s~YP~~~~~~n---L~~i~~L~~~fp~~pV-- 192 (335)
..+.++.+.+ |-.. +=++.+-|+- ...+. ..-+ |+.|..+++.||++|+
T Consensus 137 ~~~l~~~v~~a~~~GI~~-~~IilDPgi~--------------------~~~~~-~~~~~~~l~~i~~l~~~~pg~p~l~ 194 (261)
T PRK07535 137 LAVAKELVEKADEYGIPP-EDIYIDPLVL--------------------PLSAA-QDAGPEVLETIRRIKELYPKVHTTC 194 (261)
T ss_pred HHHHHHHHHHHHHcCCCH-hHEEEeCCCC--------------------cccCC-hHHHHHHHHHHHHHHHhCCCCCEEE
Confidence 3334444443 3210 1122222222 11121 1234 8889999999988887
Q ss_pred ecCCCCCC------hH--HHHHHHHcCCc--EEEeccCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCCC
Q psy17999 193 GYSGHENG------VH--VCYAAVAMGAQ--IIEKHFTLDKSWKGSDHASSLTPPELKALVTGIRDIEQSLGSP 256 (335)
Q Consensus 193 G~SdHt~g------~~--~~~aAvalGA~--vIEkH~tld~~~~G~Dh~~Sl~p~el~~lv~~ir~~~~alG~~ 256 (335)
|.|==+.| .- -..+|+..|.+ |+- .. | ..|++.++..+..+|..
T Consensus 195 G~Sn~Sfglp~r~~in~~fl~~a~~~Gl~~aI~n--p~--------~----------~~~~~~~~~~~~l~g~d 248 (261)
T PRK07535 195 GLSNISFGLPNRKLINRAFLVMAMGAGMDSAILD--PL--------D----------RDLMGAIAAAEALLGQD 248 (261)
T ss_pred EeCCCccCCcchHHHHHHHHHHHHHcCCCEEeeC--CC--------C----------HHHHHHHHHHHHHhCCC
Confidence 76655554 11 23456677776 332 11 1 23567778888887754
No 115
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=93.54 E-value=0.56 Score=45.71 Aligned_cols=74 Identities=8% Similarity=0.095 Sum_probs=62.4
Q ss_pred HHHHHHHHcCCceEeccCChhhHHHHHhCCCCEEEEcC-------CCCCCHHHHHHHHhc-CCcEEEeCCCCCCHHHHHH
Q psy17999 53 MLQQCADQVDIMFTASAMDQVSFDFLLSANVPFIKIGS-------GDSNNIPLIKYAASK-QKPLIISTGMLPSIEHVDN 124 (335)
Q Consensus 53 ~L~~~~~~~Gi~f~stpfd~~svd~l~~l~v~~~KIaS-------~d~~n~~LL~~~a~~-gkPvilStG~~~tl~Ei~~ 124 (335)
++.+..++.|+.++..+.+.+.+..++++|+|++-+-+ +...++.||.++.+. +.|||..-|.. +.+++..
T Consensus 100 ~~i~~lk~~g~~v~~~v~s~~~a~~a~~~GaD~Ivv~g~eagGh~g~~~~~~ll~~v~~~~~iPviaaGGI~-~~~~~~~ 178 (307)
T TIGR03151 100 KYIPRLKENGVKVIPVVASVALAKRMEKAGADAVIAEGMESGGHIGELTTMALVPQVVDAVSIPVIAAGGIA-DGRGMAA 178 (307)
T ss_pred HHHHHHHHcCCEEEEEcCCHHHHHHHHHcCCCEEEEECcccCCCCCCCcHHHHHHHHHHHhCCCEEEECCCC-CHHHHHH
Confidence 36666777799999999999999999999999998833 245679999998875 79999999999 9999888
Q ss_pred HHH
Q psy17999 125 IYT 127 (335)
Q Consensus 125 Av~ 127 (335)
++.
T Consensus 179 al~ 181 (307)
T TIGR03151 179 AFA 181 (307)
T ss_pred HHH
Confidence 875
No 116
>PRK13753 dihydropteroate synthase; Provisional
Probab=93.53 E-value=2.7 Score=40.75 Aligned_cols=59 Identities=12% Similarity=0.077 Sum_probs=47.8
Q ss_pred HHHHHHHHcCCceEeccCChhhHHHHHhCCCCEEEEcCCCCCCHHHHHHHHhcCCcEEEe
Q psy17999 53 MLQQCADQVDIMFTASAMDQVSFDFLLSANVPFIKIGSGDSNNIPLIKYAASKQKPLIIS 112 (335)
Q Consensus 53 ~L~~~~~~~Gi~f~stpfd~~svd~l~~l~v~~~KIaS~d~~n~~LL~~~a~~gkPvilS 112 (335)
...+..++.++.+...-|.++-++.+.+.|++++-==|+. ++..+++-+++.+.|++|.
T Consensus 67 pvI~~l~~~~~~ISIDT~~~~va~~al~aGadiINDVsg~-~d~~~~~vva~~~~~vVlm 125 (279)
T PRK13753 67 PLLDALSDQMHRVSIDSFQPETQRYALKRGVGYLNDIQGF-PDPALYPDIAEADCRLVVM 125 (279)
T ss_pred HHHHHHHhCCCcEEEECCCHHHHHHHHHcCCCEEEeCCCC-CchHHHHHHHHcCCCEEEE
Confidence 4455556668889999999999999999999987655654 5778888899999999994
No 117
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=93.45 E-value=0.52 Score=43.41 Aligned_cols=142 Identities=21% Similarity=0.260 Sum_probs=85.5
Q ss_pred HHHHHHHHHHcCCceEeccCChhhHHH----HHhCCCCEEEEcCCCCC-------------CHHHH----HHHHhcCCcE
Q psy17999 51 YVMLQQCADQVDIMFTASAMDQVSFDF----LLSANVPFIKIGSGDSN-------------NIPLI----KYAASKQKPL 109 (335)
Q Consensus 51 ~~~L~~~~~~~Gi~f~stpfd~~svd~----l~~l~v~~~KIaS~d~~-------------n~~LL----~~~a~~gkPv 109 (335)
++.+.+...+.-+..++. ...+.++. +...+++.+.+...-.. ....+ +++-+.|..+
T Consensus 46 v~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v 124 (237)
T PF00682_consen 46 VRRLREALPNARLQALCR-ANEEDIERAVEAAKEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEV 124 (237)
T ss_dssp HHHHHHHHHSSEEEEEEE-SCHHHHHHHHHHHHHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEE
T ss_pred hhhhhhhhcccccceeee-ehHHHHHHHHHhhHhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCce
Confidence 344444444533333333 34455554 33488888777643221 03333 3344568888
Q ss_pred EEeC---CCCCCHHHHHHHHHHHHh-cCCCCceeecccCCCCCCCCcccccCceEEeeecCCCCCCccCCCchHHHHHHH
Q psy17999 110 IIST---GMLPSIEHVDNIYTTVKQ-YHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYPTPYHDINLNVIHTLRS 185 (335)
Q Consensus 110 ilSt---G~~~tl~Ei~~Av~~i~~-g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~s~YP~~~~~~nL~~i~~L~~ 185 (335)
-++. +.. +++++.+.++.+.. |-. .|-+|++- .+=+|..-. ..+..+++
T Consensus 125 ~~~~~~~~~~-~~~~~~~~~~~~~~~g~~--~i~l~Dt~----------------------G~~~P~~v~--~lv~~~~~ 177 (237)
T PF00682_consen 125 AFGCEDASRT-DPEELLELAEALAEAGAD--IIYLADTV----------------------GIMTPEDVA--ELVRALRE 177 (237)
T ss_dssp EEEETTTGGS-SHHHHHHHHHHHHHHT-S--EEEEEETT----------------------S-S-HHHHH--HHHHHHHH
T ss_pred EeCccccccc-cHHHHHHHHHHHHHcCCe--EEEeeCcc----------------------CCcCHHHHH--HHHHHHHH
Confidence 7774 345 89999999998887 544 45555442 222333222 44788999
Q ss_pred HCCCCCeecCCCC-CC--hHHHHHHHHcCCcEEEeccCCC
Q psy17999 186 RYPDIPIGYSGHE-NG--VHVCYAAVAMGAQIIEKHFTLD 222 (335)
Q Consensus 186 ~fp~~pVG~SdHt-~g--~~~~~aAvalGA~vIEkH~tld 222 (335)
.+|++++||-.|. .| ...+++|+..||+.|+ .|+.
T Consensus 178 ~~~~~~l~~H~Hnd~Gla~An~laA~~aGa~~id--~t~~ 215 (237)
T PF00682_consen 178 ALPDIPLGFHAHNDLGLAVANALAALEAGADRID--GTLG 215 (237)
T ss_dssp HSTTSEEEEEEBBTTS-HHHHHHHHHHTT-SEEE--EBGG
T ss_pred hccCCeEEEEecCCccchhHHHHHHHHcCCCEEE--ccCc
Confidence 9988999997665 34 5667899999999987 5553
No 118
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=93.36 E-value=1.7 Score=42.33 Aligned_cols=103 Identities=14% Similarity=0.079 Sum_probs=62.1
Q ss_pred cCCCCCCHHHHHHHHh-----cCCcEEEeCC--CCCCHHHHHHHHHHHHhcCCCCceeecccCCCCCCCCcccccCceEE
Q psy17999 89 GSGDSNNIPLIKYAAS-----KQKPLIISTG--MLPSIEHVDNIYTTVKQYHSNLSILHCVSAYPTPYPTVKQYHSNLSI 161 (335)
Q Consensus 89 aS~d~~n~~LL~~~a~-----~gkPvilStG--~~~tl~Ei~~Av~~i~~g~~~~~~~~c~~g~~~~~~~~~~~~~~l~l 161 (335)
||.-++|..++.++.+ ++.||.++.- ...+..++.+.++.+...+. +...
T Consensus 109 Gs~l~~~~~~~~ei~~~vr~~~~~pv~vKir~g~~~~~~~~~~~a~~l~~~G~-----------------------d~i~ 165 (319)
T TIGR00737 109 GSALLRDPDLIGKIVKAVVDAVDIPVTVKIRIGWDDAHINAVEAARIAEDAGA-----------------------QAVT 165 (319)
T ss_pred cchHhCCHHHHHHHHHHHHhhcCCCEEEEEEcccCCCcchHHHHHHHHHHhCC-----------------------CEEE
Confidence 4445677777766554 4799999863 22122234444454554222 4555
Q ss_pred eeecCCCCCCccCCCchHHHHHHHHCCCCCeecCCCCCChHHHHHHH-HcCCcEE
Q psy17999 162 LHCVSAYPTPYHDINLNVIHTLRSRYPDIPIGYSGHENGVHVCYAAV-AMGAQII 215 (335)
Q Consensus 162 lHC~s~YP~~~~~~nL~~i~~L~~~fp~~pVG~SdHt~g~~~~~aAv-alGA~vI 215 (335)
+|+-+.........++..+..+++.. ++||..++--....-+..++ ..||+.+
T Consensus 166 vh~r~~~~~~~~~~~~~~i~~i~~~~-~ipvi~nGgI~~~~da~~~l~~~gad~V 219 (319)
T TIGR00737 166 LHGRTRAQGYSGEANWDIIARVKQAV-RIPVIGNGDIFSPEDAKAMLETTGCDGV 219 (319)
T ss_pred EEcccccccCCCchhHHHHHHHHHcC-CCcEEEeCCCCCHHHHHHHHHhhCCCEE
Confidence 67654322222346899999999988 79997766555556666666 4678743
No 119
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=93.36 E-value=0.45 Score=46.00 Aligned_cols=119 Identities=17% Similarity=0.198 Sum_probs=69.4
Q ss_pred CCCCcEEEeeccc---ccccccccccCCCCCCCCCCcccHHHHHHhhcCCHHHHHHHHHHHH-HcCCceEeccC------
Q psy17999 1 ECGADCVKFQKSC---LSTKFTQSALDRPYLSPHAWANTYGQHKQHLEFSQEEYVMLQQCAD-QVDIMFTASAM------ 70 (335)
Q Consensus 1 ~aGaDaVKFQ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~e~~~~L~~~~~-~~Gi~f~stpf------ 70 (335)
++|+|+|++..-. .+.+++... + .....|+.+. .++..+..|-++.+++.+. ..-|.+=.++.
T Consensus 152 ~aGfDgveih~~~gyL~~qFlsp~~-n---~R~d~yGgs~---enr~r~~~eii~avr~~~g~d~~i~vris~~~~~~~g 224 (327)
T cd02803 152 EAGFDGVEIHGAHGYLLSQFLSPYT-N---KRTDEYGGSL---ENRARFLLEIVAAVREAVGPDFPVGVRLSADDFVPGG 224 (327)
T ss_pred HcCCCEEEEcchhhhHHHHhcCccc-c---CCCcccCCCH---HHHHHHHHHHHHHHHHHcCCCceEEEEechhccCCCC
Confidence 4899999987521 111112111 0 0011245443 3445666777777777662 22222222432
Q ss_pred -Chhh----HHHHHhCCCCEEEEcCCCC---------------CCHHHHHHHHh-cCCcEEEeCCCCCCHHHHHHHHH
Q psy17999 71 -DQVS----FDFLLSANVPFIKIGSGDS---------------NNIPLIKYAAS-KQKPLIISTGMLPSIEHVDNIYT 127 (335)
Q Consensus 71 -d~~s----vd~l~~l~v~~~KIaS~d~---------------~n~~LL~~~a~-~gkPvilStG~~~tl~Ei~~Av~ 127 (335)
+.+. ++.++++|++++.|.++.. .++++++.+.+ .+.||+..-|.. |.+++.++++
T Consensus 225 ~~~~e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~Ggi~-t~~~a~~~l~ 301 (327)
T cd02803 225 LTLEEAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKAVKIPVIAVGGIR-DPEVAEEILA 301 (327)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHHCCCCEEEeCCCC-CHHHHHHHHH
Confidence 2222 5677788999999877653 24567777665 489999998888 8888877653
No 120
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=93.33 E-value=2.7 Score=41.30 Aligned_cols=139 Identities=17% Similarity=0.139 Sum_probs=77.6
Q ss_pred CCHHHHHHHHHHHHH-cCCceEe--ccCChhhHHHHHhCCCCEEEEcCCCCCC---HHHHHHHHhcC--CcEEEeCCCCC
Q psy17999 46 FSQEEYVMLQQCADQ-VDIMFTA--SAMDQVSFDFLLSANVPFIKIGSGDSNN---IPLIKYAASKQ--KPLIISTGMLP 117 (335)
Q Consensus 46 l~~e~~~~L~~~~~~-~Gi~f~s--tpfd~~svd~l~~l~v~~~KIaS~d~~n---~~LL~~~a~~g--kPvilStG~~~ 117 (335)
++.+++.+..+..++ .++.... ++-+.+.++.+.+.|++++-|.+..-.+ .++++++.+.. .||++.+. .
T Consensus 67 ~~~~~~~~~i~~vk~~l~v~~~~~~~~~~~~~~~~l~eagv~~I~vd~~~G~~~~~~~~i~~ik~~~p~v~Vi~G~v-~- 144 (325)
T cd00381 67 MSIEEQAEEVRKVKGRLLVGAAVGTREDDKERAEALVEAGVDVIVIDSAHGHSVYVIEMIKFIKKKYPNVDVIAGNV-V- 144 (325)
T ss_pred CCHHHHHHHHHHhccCceEEEecCCChhHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHHHHHCCCceEEECCC-C-
Confidence 566666665555553 2222222 2234456777788899999986654333 56777777765 77887333 3
Q ss_pred CHHHHHHHHHHHHhcCCCCceeecccCCCCCCCCcccccCceEEe------eecCCCCCCccCCCchHHHHHHHHCC--C
Q psy17999 118 SIEHVDNIYTTVKQYHSNLSILHCVSAYPTPYPTVKQYHSNLSIL------HCVSAYPTPYHDINLNVIHTLRSRYP--D 189 (335)
Q Consensus 118 tl~Ei~~Av~~i~~g~~~~~~~~c~~g~~~~~~~~~~~~~~l~ll------HC~s~YP~~~~~~nL~~i~~L~~~fp--~ 189 (335)
|.++...+.+ .|- +.+.. +|++.--+.....++..|..+.+... +
T Consensus 145 t~~~A~~l~~---aGa------------------------D~I~vg~g~G~~~~t~~~~g~g~p~~~~i~~v~~~~~~~~ 197 (325)
T cd00381 145 TAEAARDLID---AGA------------------------DGVKVGIGPGSICTTRIVTGVGVPQATAVADVAAAARDYG 197 (325)
T ss_pred CHHHHHHHHh---cCC------------------------CEEEECCCCCcCcccceeCCCCCCHHHHHHHHHHHHhhcC
Confidence 6666666544 243 23322 24433222223446666666654332 5
Q ss_pred CCeecCCCCCChHHHHHHHHcCCc
Q psy17999 190 IPIGYSGHENGVHVCYAAVAMGAQ 213 (335)
Q Consensus 190 ~pVG~SdHt~g~~~~~aAvalGA~ 213 (335)
+||.-++--....-...|.++||+
T Consensus 198 vpVIA~GGI~~~~di~kAla~GA~ 221 (325)
T cd00381 198 VPVIADGGIRTSGDIVKALAAGAD 221 (325)
T ss_pred CcEEecCCCCCHHHHHHHHHcCCC
Confidence 888543333334555678899998
No 121
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=93.26 E-value=0.82 Score=48.65 Aligned_cols=145 Identities=19% Similarity=0.251 Sum_probs=89.8
Q ss_pred CCHHHHHHHHHHHHH-cCCc--eEecc------------CChhhHHHHHhCCCCEEEEcCC--CCCCHH-HHHHHHhcCC
Q psy17999 46 FSQEEYVMLQQCADQ-VDIM--FTASA------------MDQVSFDFLLSANVPFIKIGSG--DSNNIP-LIKYAASKQK 107 (335)
Q Consensus 46 l~~e~~~~L~~~~~~-~Gi~--f~stp------------fd~~svd~l~~l~v~~~KIaS~--d~~n~~-LL~~~a~~gk 107 (335)
++++.|..|.+..+. .+.. .++.. .-...++...+.|++.+.|... |+.|.. .++++.+.|+
T Consensus 58 l~edp~e~l~~l~~~~~~~~l~~l~Rg~N~~gy~~ypd~vv~~~v~~A~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~ 137 (592)
T PRK09282 58 LNEDPWERLRKLKKALPNTPLQMLLRGQNLVGYRHYPDDVVEKFVEKAAENGIDIFRIFDALNDVRNMEVAIKAAKKAGA 137 (592)
T ss_pred CCccHHHHHHHHHHhCCCCEEEEEeccccccccccccchhhHHHHHHHHHCCCCEEEEEEecChHHHHHHHHHHHHHcCC
Confidence 566777777776655 2333 33222 1123467777889999887643 343332 3344445677
Q ss_pred cEE--Ee-CC--CCCCHHHHHHHHHHHHh-cCCCCceeecccCCCCCCCCcccccCceEEeeecCCCCCCccCCCchHHH
Q psy17999 108 PLI--IS-TG--MLPSIEHVDNIYTTVKQ-YHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYPTPYHDINLNVIH 181 (335)
Q Consensus 108 Pvi--lS-tG--~~~tl~Ei~~Av~~i~~-g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~s~YP~~~~~~nL~~i~ 181 (335)
-+- ++ |+ .. |++.+.+.++.+.. |.. .|.+|+.. ..=+|..-. ..+.
T Consensus 138 ~v~~~i~~t~~p~~-t~~~~~~~a~~l~~~Gad--~I~i~Dt~----------------------G~~~P~~~~--~lv~ 190 (592)
T PRK09282 138 HVQGTISYTTSPVH-TIEKYVELAKELEEMGCD--SICIKDMA----------------------GLLTPYAAY--ELVK 190 (592)
T ss_pred EEEEEEEeccCCCC-CHHHHHHHHHHHHHcCCC--EEEECCcC----------------------CCcCHHHHH--HHHH
Confidence 554 33 22 23 78888888877776 655 56666652 122233222 3377
Q ss_pred HHHHHCCCCCeecCCCCC-C--hHHHHHHHHcCCcEEEec
Q psy17999 182 TLRSRYPDIPIGYSGHEN-G--VHVCYAAVAMGAQIIEKH 218 (335)
Q Consensus 182 ~L~~~fp~~pVG~SdHt~-g--~~~~~aAvalGA~vIEkH 218 (335)
.||+++ ++|||+=.|.. | ....++|+..||++|.-=
T Consensus 191 ~lk~~~-~~pi~~H~Hnt~Gla~An~laAv~aGad~vD~a 229 (592)
T PRK09282 191 ALKEEV-DLPVQLHSHCTSGLAPMTYLKAVEAGVDIIDTA 229 (592)
T ss_pred HHHHhC-CCeEEEEEcCCCCcHHHHHHHHHHhCCCEEEee
Confidence 889999 69999988864 4 666789999999998843
No 122
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=93.20 E-value=1.9 Score=38.95 Aligned_cols=89 Identities=18% Similarity=0.230 Sum_probs=68.8
Q ss_pred EeccCChhhHHHHHhCCCCEEEEcCCCCCCHHHHHHHHhcCCcEEEeCCCCCCHHHHHHHHHHHHhcCCCCceeecccCC
Q psy17999 66 TASAMDQVSFDFLLSANVPFIKIGSGDSNNIPLIKYAASKQKPLIISTGMLPSIEHVDNIYTTVKQYHSNLSILHCVSAY 145 (335)
Q Consensus 66 ~stpfd~~svd~l~~l~v~~~KIaS~d~~n~~LL~~~a~~gkPvilStG~~~tl~Ei~~Av~~i~~g~~~~~~~~c~~g~ 145 (335)
..|++..+.++.+.++|.+++-++..+ .+.++.....+.+.++ |.. |++|+.+|.+. |.
T Consensus 68 ~gtvl~~d~~~~A~~~gAdgv~~p~~~---~~~~~~~~~~~~~~i~--G~~-t~~e~~~A~~~---Ga------------ 126 (187)
T PRK07455 68 TGTILTLEDLEEAIAAGAQFCFTPHVD---PELIEAAVAQDIPIIP--GAL-TPTEIVTAWQA---GA------------ 126 (187)
T ss_pred EEEEEcHHHHHHHHHcCCCEEECCCCC---HHHHHHHHHcCCCEEc--CcC-CHHHHHHHHHC---CC------------
Confidence 568999999999999999999888765 6777777777888776 466 99999988752 33
Q ss_pred CCCCCCcccccCceEEeeecCCCCCCccCCCchHHHHHHHHCCCCCee
Q psy17999 146 PTPYPTVKQYHSNLSILHCVSAYPTPYHDINLNVIHTLRSRYPDIPIG 193 (335)
Q Consensus 146 ~~~~~~~~~~~~~l~llHC~s~YP~~~~~~nL~~i~~L~~~fp~~pVG 193 (335)
+++-+ |||+. -..+..+..++..+|++|+-
T Consensus 127 ------------dyv~~-----Fpt~~-~~G~~~l~~~~~~~~~ipvv 156 (187)
T PRK07455 127 ------------SCVKV-----FPVQA-VGGADYIKSLQGPLGHIPLI 156 (187)
T ss_pred ------------CEEEE-----CcCCc-ccCHHHHHHHHhhCCCCcEE
Confidence 33333 89854 35688899999999888873
No 123
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=93.17 E-value=0.94 Score=42.73 Aligned_cols=83 Identities=11% Similarity=0.081 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHcCCceEeccC---------Chhh----HHHHHhCCCCEEEEcCCCCCCHHHHHHHHh-cCCcEEEeCC
Q psy17999 49 EEYVMLQQCADQVDIMFTASAM---------DQVS----FDFLLSANVPFIKIGSGDSNNIPLIKYAAS-KQKPLIISTG 114 (335)
Q Consensus 49 e~~~~L~~~~~~~Gi~f~stpf---------d~~s----vd~l~~l~v~~~KIaS~d~~n~~LL~~~a~-~gkPvilStG 114 (335)
++..++.+.|+++|+.|+.-.+ +.+. +....++|+|++|++.. .....++++.+ .+.||+.+=|
T Consensus 123 ~~~~~i~~~~~~~g~~liv~~~~~Gvh~~~~~~~~~~~~~~~a~~~GADyikt~~~--~~~~~l~~~~~~~~iPVva~GG 200 (258)
T TIGR01949 123 RDLGMIAEICDDWGVPLLAMMYPRGPHIDDRDPELVAHAARLGAELGADIVKTPYT--GDIDSFRDVVKGCPAPVVVAGG 200 (258)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeccCcccccccHHHHHHHHHHHHHHCCCEEeccCC--CCHHHHHHHHHhCCCcEEEecC
Confidence 5788999999999999988332 2222 34445789999999744 47899999886 6899977644
Q ss_pred CC-CCHHHHHHHHHHHHh-cC
Q psy17999 115 ML-PSIEHVDNIYTTVKQ-YH 133 (335)
Q Consensus 115 ~~-~tl~Ei~~Av~~i~~-g~ 133 (335)
.. .|+++..+-++.+.. |.
T Consensus 201 i~~~~~~~~~~~i~~~~~aGa 221 (258)
T TIGR01949 201 PKTNSDREFLQMIKDAMEAGA 221 (258)
T ss_pred CCCCCHHHHHHHHHHHHHcCC
Confidence 33 135554444433333 53
No 124
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=93.09 E-value=6.5 Score=35.48 Aligned_cols=76 Identities=7% Similarity=0.013 Sum_probs=58.4
Q ss_pred cCCHHHHHHHHHHHHH--cCCceEeccCChhhHHHHHhCCCCEEEEcCCCCCCHHHHHHHHh-cCCcEEEeCCCCCCHHH
Q psy17999 45 EFSQEEYVMLQQCADQ--VDIMFTASAMDQVSFDFLLSANVPFIKIGSGDSNNIPLIKYAAS-KQKPLIISTGMLPSIEH 121 (335)
Q Consensus 45 el~~e~~~~L~~~~~~--~Gi~f~stpfd~~svd~l~~l~v~~~KIaS~d~~n~~LL~~~a~-~gkPvilStG~~~tl~E 121 (335)
+++.++.++|.+.|+. .++.++....-.+-.+.+.++++|.++++..+ ....++++-+ .+.++|..-|.+ +..+
T Consensus 34 ~v~~~~a~~l~~~~~~~~~~V~v~vn~~~~~i~~ia~~~~~d~Vqlhg~e--~~~~~~~l~~~~~~~~i~~i~~~-~~~~ 110 (203)
T cd00405 34 YVSPEQAREIVAALPPFVKRVGVFVNEDLEEILEIAEELGLDVVQLHGDE--SPEYCAQLRARLGLPVIKAIRVK-DEED 110 (203)
T ss_pred CCCHHHHHHHHHhCCCCCcEEEEEeCCCHHHHHHHHHhcCCCEEEECCCC--CHHHHHHHHhhcCCcEEEEEecC-Chhh
Confidence 4678899999999998 88888777665666688889999999999886 4556776655 378999777776 5544
Q ss_pred HH
Q psy17999 122 VD 123 (335)
Q Consensus 122 i~ 123 (335)
..
T Consensus 111 ~~ 112 (203)
T cd00405 111 LE 112 (203)
T ss_pred HH
Confidence 43
No 125
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=93.08 E-value=6.8 Score=37.81 Aligned_cols=144 Identities=13% Similarity=0.091 Sum_probs=84.9
Q ss_pred hcCCHHHHHHHHHHHHHcCCceEeccCChhhHHHHHhCCCCEEEEcCCC----------C-CC----------------H
Q psy17999 44 LEFSQEEYVMLQQCADQVDIMFTASAMDQVSFDFLLSANVPFIKIGSGD----------S-NN----------------I 96 (335)
Q Consensus 44 ~el~~e~~~~L~~~~~~~Gi~f~stpfd~~svd~l~~l~v~~~KIaS~d----------~-~n----------------~ 96 (335)
-+|+.+++.++.+.-. +++..+.+.|+|.++|..+. . |. .
T Consensus 129 ~~mt~~ei~~~i~~~~-------------~aA~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~ 195 (327)
T cd02803 129 REMTKEEIEQIIEDFA-------------AAARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLL 195 (327)
T ss_pred CcCCHHHHHHHHHHHH-------------HHHHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHH
Confidence 3688888887776433 45677778889998887541 1 11 3
Q ss_pred HHHHHHHhc---CCcEEEeCCCC------CCHHHHHHHHHHHHhcCCCCceeecccCCCCCCCCcccccCceEEeeecCC
Q psy17999 97 PLIKYAASK---QKPLIISTGML------PSIEHVDNIYTTVKQYHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSA 167 (335)
Q Consensus 97 ~LL~~~a~~---gkPvilStG~~------~tl~Ei~~Av~~i~~g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~s~ 167 (335)
..++++.+. +.||.+..... .+++|....++.+...+- ..+.+..|.... .. .. ...
T Consensus 196 eii~avr~~~g~d~~i~vris~~~~~~~g~~~~e~~~la~~l~~~G~--d~i~vs~g~~~~---------~~-~~--~~~ 261 (327)
T cd02803 196 EIVAAVREAVGPDFPVGVRLSADDFVPGGLTLEEAIEIAKALEEAGV--DALHVSGGSYES---------PP-PI--IPP 261 (327)
T ss_pred HHHHHHHHHcCCCceEEEEechhccCCCCCCHHHHHHHHHHHHHcCC--CEEEeCCCCCcc---------cc-cc--cCC
Confidence 566666653 56888754421 278888888887776222 223222222100 00 00 000
Q ss_pred CCCCccCCCchHHHHHHHHCCCCCeecCCCCCChHHHHHHHHc-CCcEEE
Q psy17999 168 YPTPYHDINLNVIHTLRSRYPDIPIGYSGHENGVHVCYAAVAM-GAQIIE 216 (335)
Q Consensus 168 YP~~~~~~nL~~i~~L~~~fp~~pVG~SdHt~g~~~~~aAval-GA~vIE 216 (335)
++ .....++..+..+++.+ ++||.-.+--.....+..+++. ||++|-
T Consensus 262 ~~-~~~~~~~~~~~~ir~~~-~iPVi~~Ggi~t~~~a~~~l~~g~aD~V~ 309 (327)
T cd02803 262 PY-VPEGYFLELAEKIKKAV-KIPVIAVGGIRDPEVAEEILAEGKADLVA 309 (327)
T ss_pred CC-CCcchhHHHHHHHHHHC-CCCEEEeCCCCCHHHHHHHHHCCCCCeee
Confidence 00 11357788889999998 8999665554456666677777 677553
No 126
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=93.01 E-value=2.8 Score=40.42 Aligned_cols=148 Identities=13% Similarity=0.091 Sum_probs=79.8
Q ss_pred HHHHHhCCCCEEEEcCCCC-----CCHHHHHHHHhc-CCcEEEeCCCCCCHHHHHHHHHHHHhcCCCCceeecccCCCCC
Q psy17999 75 FDFLLSANVPFIKIGSGDS-----NNIPLIKYAASK-QKPLIISTGMLPSIEHVDNIYTTVKQYHSNLSILHCVSAYPTP 148 (335)
Q Consensus 75 vd~l~~l~v~~~KIaS~d~-----~n~~LL~~~a~~-gkPvilStG~~~tl~Ei~~Av~~i~~g~~~~~~~~c~~g~~~~ 148 (335)
++.+++.+++++-+.-... ..+..|+++.+. +.||+++. .. +.++...+.+ .|-
T Consensus 135 i~~~~~~g~~~i~l~~~~p~~~~~~~~~~i~~l~~~~~~pvivK~-v~-s~~~a~~a~~---~G~--------------- 194 (299)
T cd02809 135 LRRAEAAGYKALVLTVDTPVLGRRLTWDDLAWLRSQWKGPLILKG-IL-TPEDALRAVD---AGA--------------- 194 (299)
T ss_pred HHHHHHcCCCEEEEecCCCCCCCCCCHHHHHHHHHhcCCCEEEee-cC-CHHHHHHHHH---CCC---------------
Confidence 3444556677766643222 236788888764 89999984 34 6666555543 132
Q ss_pred CCCcccccCceEEeeecCCCCCCccCCCchHHHHHHHHCC-CCCeecCCCCCChHHHHHHHHcCCcEE--EeccCCCCCC
Q psy17999 149 YPTVKQYHSNLSILHCVSAYPTPYHDINLNVIHTLRSRYP-DIPIGYSGHENGVHVCYAAVAMGAQII--EKHFTLDKSW 225 (335)
Q Consensus 149 ~~~~~~~~~~l~llHC~s~YP~~~~~~nL~~i~~L~~~fp-~~pVG~SdHt~g~~~~~aAvalGA~vI--EkH~tld~~~ 225 (335)
+.+.+|............++..+..+++..+ ++||.-++--....-...|.++||+.+ =+-|-..-..
T Consensus 195 ---------d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~kal~lGAd~V~ig~~~l~~~~~ 265 (299)
T cd02809 195 ---------DGIVVSNHGGRQLDGAPATIDALPEIVAAVGGRIEVLLDGGIRRGTDVLKALALGADAVLIGRPFLYGLAA 265 (299)
T ss_pred ---------CEEEEcCCCCCCCCCCcCHHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHcCCCEEEEcHHHHHHHHh
Confidence 3333332111111112356777888877764 588865554444455556778999933 3222111001
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHhCC
Q psy17999 226 KGSDHASSLTPPELKALVTGIRDIEQSLGS 255 (335)
Q Consensus 226 ~G~Dh~~Sl~p~el~~lv~~ir~~~~alG~ 255 (335)
.|.+ --.+.+..+.++++..-..+|.
T Consensus 266 ~g~~----~v~~~i~~l~~el~~~m~~~G~ 291 (299)
T cd02809 266 GGEA----GVAHVLEILRDELERAMALLGC 291 (299)
T ss_pred cCHH----HHHHHHHHHHHHHHHHHHHHCC
Confidence 1211 0134566666777777777774
No 127
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=92.91 E-value=0.75 Score=43.77 Aligned_cols=78 Identities=15% Similarity=0.132 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHc---CCceE-eccCChhhHHHHHhCCCCEEEE-----cCC-CCCCHHHHHHHHh-cCCcEEEeCCCCC
Q psy17999 49 EEYVMLQQCADQV---DIMFT-ASAMDQVSFDFLLSANVPFIKI-----GSG-DSNNIPLIKYAAS-KQKPLIISTGMLP 117 (335)
Q Consensus 49 e~~~~L~~~~~~~---Gi~f~-stpfd~~svd~l~~l~v~~~KI-----aS~-d~~n~~LL~~~a~-~gkPvilStG~~~ 117 (335)
.+..++.+.|+++ |+.++ -+.-|..-...|+++|++++-. ||+ -+.|..+|+.+.+ .+.|||+.-|-+
T Consensus 107 pd~~~tv~aa~~L~~~Gf~vlpyc~dd~~~ar~l~~~G~~~vmPlg~pIGsg~Gi~~~~~I~~I~e~~~vpVI~egGI~- 185 (248)
T cd04728 107 PDPIETLKAAEILVKEGFTVLPYCTDDPVLAKRLEDAGCAAVMPLGSPIGSGQGLLNPYNLRIIIERADVPVIVDAGIG- 185 (248)
T ss_pred cCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHcCCCEeCCCCcCCCCCCCCCCHHHHHHHHHhCCCcEEEeCCCC-
Confidence 3578899999999 99999 8888999999999999999833 333 4558999999988 588999999999
Q ss_pred CHHHHHHHHH
Q psy17999 118 SIEHVDNIYT 127 (335)
Q Consensus 118 tl~Ei~~Av~ 127 (335)
|.+++..|++
T Consensus 186 tpeda~~Ame 195 (248)
T cd04728 186 TPSDAAQAME 195 (248)
T ss_pred CHHHHHHHHH
Confidence 9999999977
No 128
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=92.81 E-value=1.3 Score=45.86 Aligned_cols=146 Identities=16% Similarity=0.200 Sum_probs=88.7
Q ss_pred CCHHHHHHHHHHHHH-cCCceEe--cc-------CChhh-----HHHHHhCCCCEEEEc--CCCCCCHH-HHHHHHhcCC
Q psy17999 46 FSQEEYVMLQQCADQ-VDIMFTA--SA-------MDQVS-----FDFLLSANVPFIKIG--SGDSNNIP-LIKYAASKQK 107 (335)
Q Consensus 46 l~~e~~~~L~~~~~~-~Gi~f~s--tp-------fd~~s-----vd~l~~l~v~~~KIa--S~d~~n~~-LL~~~a~~gk 107 (335)
++++.|..|....+. .++.+.+ .. ..++. ++...+.|++.+.|. ..|+.|.. .++++.+.|+
T Consensus 57 l~e~p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~~dDvv~~fv~~A~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~ 136 (467)
T PRK14041 57 LNENPWERLKEIRKRLKNTKIQMLLRGQNLVGYRHYADDVVELFVKKVAEYGLDIIRIFDALNDIRNLEKSIEVAKKHGA 136 (467)
T ss_pred cCCCHHHHHHHHHHhCCCCEEEEEeccccccCcccccchhhHHHHHHHHHCCcCEEEEEEeCCHHHHHHHHHHHHHHCCC
Confidence 455566666666655 3444432 32 12223 567778899987776 33444443 3344445677
Q ss_pred cEE--EeC--C-CCCCHHHHHHHHHHHHh-cCCCCceeecccCCCCCCCCcccccCceEEeeecCCCCCCccCCCchHHH
Q psy17999 108 PLI--IST--G-MLPSIEHVDNIYTTVKQ-YHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYPTPYHDINLNVIH 181 (335)
Q Consensus 108 Pvi--lSt--G-~~~tl~Ei~~Av~~i~~-g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~s~YP~~~~~~nL~~i~ 181 (335)
-+. ++. + .. +++.+.+.++.+.. |.. .|-+|+.. .+=+|..-.. .+.
T Consensus 137 ~v~~~i~~t~~p~~-t~e~~~~~a~~l~~~Gad--~I~i~Dt~----------------------G~l~P~~v~~--Lv~ 189 (467)
T PRK14041 137 HVQGAISYTVSPVH-TLEYYLEFARELVDMGVD--SICIKDMA----------------------GLLTPKRAYE--LVK 189 (467)
T ss_pred EEEEEEEeccCCCC-CHHHHHHHHHHHHHcCCC--EEEECCcc----------------------CCcCHHHHHH--HHH
Confidence 655 331 1 23 77888887777776 654 45555542 2223333333 377
Q ss_pred HHHHHCCCCCeecCCCCC-C--hHHHHHHHHcCCcEEEecc
Q psy17999 182 TLRSRYPDIPIGYSGHEN-G--VHVCYAAVAMGAQIIEKHF 219 (335)
Q Consensus 182 ~L~~~fp~~pVG~SdHt~-g--~~~~~aAvalGA~vIEkH~ 219 (335)
.||+++ ++||++=.|.. | ....++|+..||++|.-=+
T Consensus 190 ~lk~~~-~vpI~~H~Hnt~GlA~AN~laAieaGad~vD~sv 229 (467)
T PRK14041 190 ALKKKF-GVPVEVHSHCTTGLASLAYLAAVEAGADMFDTAI 229 (467)
T ss_pred HHHHhc-CCceEEEecCCCCcHHHHHHHHHHhCCCEEEeec
Confidence 889999 69999987754 4 6667899999999988533
No 129
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=92.44 E-value=7.2 Score=38.20 Aligned_cols=185 Identities=16% Similarity=0.231 Sum_probs=99.2
Q ss_pred CCHHHHHHHH-HHHHHcCCceEeccCChhh------HHHHHhCCCCEEEEcCC----C--C-------CCHHHHHHHHh-
Q psy17999 46 FSQEEYVMLQ-QCADQVDIMFTASAMDQVS------FDFLLSANVPFIKIGSG----D--S-------NNIPLIKYAAS- 104 (335)
Q Consensus 46 l~~e~~~~L~-~~~~~~Gi~f~stpfd~~s------vd~l~~l~v~~~KIaS~----d--~-------~n~~LL~~~a~- 104 (335)
.+.+.|.+.. ...++.++.++.+.+.... +..+++.|++++-|.-+ + . .-+.+++++.+
T Consensus 84 ~g~d~~~~~i~~~~~~~~~pvi~sI~g~~~~e~~~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~~ 163 (334)
T PRK07565 84 VGPEEYLELIRRAKEAVDIPVIASLNGSSAGGWVDYARQIEQAGADALELNIYYLPTDPDISGAEVEQRYLDILRAVKSA 163 (334)
T ss_pred cCHHHHHHHHHHHHHhcCCcEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHhc
Confidence 4445554444 4435567888888865332 33556678999988211 1 1 12466777765
Q ss_pred cCCcEEEeCCCCCCHHHHHHHHHHHHh-cCCCCceeecccCCCCCCCCcccccCceEEeeecCCCCCCc-cCCCchHHHH
Q psy17999 105 KQKPLIISTGMLPSIEHVDNIYTTVKQ-YHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYPTPY-HDINLNVIHT 182 (335)
Q Consensus 105 ~gkPvilStG~~~tl~Ei~~Av~~i~~-g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~s~YP~~~-~~~nL~~i~~ 182 (335)
+++||+++.+.. ..++...++.+.. |-. -|.+..+...... +.+.. +.. ....|+.+. -..-|+.+..
T Consensus 164 ~~iPV~vKl~p~--~~~~~~~a~~l~~~G~d--gI~~~n~~~~~~~-d~~~~--~~~---~~~glsg~~~~~~al~~v~~ 233 (334)
T PRK07565 164 VSIPVAVKLSPY--FSNLANMAKRLDAAGAD--GLVLFNRFYQPDI-DLETL--EVV---PGLVLSTPAELRLPLRWIAI 233 (334)
T ss_pred cCCcEEEEeCCC--chhHHHHHHHHHHcCCC--eEEEECCcCCCCc-Chhhc--ccc---cCCCCCCchhhhHHHHHHHH
Confidence 489999995533 3456666666666 543 2333333221100 00000 000 011233333 2344677788
Q ss_pred HHHHCCCCCeecC-CCCCChHHHHHHHHcCCcEEEeccCCCCC--CCCCCCCCCCCHHHHHHHHHHHHHHHHHhC
Q psy17999 183 LRSRYPDIPIGYS-GHENGVHVCYAAVAMGAQIIEKHFTLDKS--WKGSDHASSLTPPELKALVTGIRDIEQSLG 254 (335)
Q Consensus 183 L~~~fp~~pVG~S-dHt~g~~~~~aAvalGA~vIEkH~tld~~--~~G~Dh~~Sl~p~el~~lv~~ir~~~~alG 254 (335)
+++.. ++||.-+ +-..+..+ .-.+.+||+.+-- . +. ..| |+-+.++++.++..-...|
T Consensus 234 ~~~~~-~ipIig~GGI~s~~Da-~e~l~aGA~~V~v--~--t~~~~~g--------~~~~~~i~~~L~~~l~~~g 294 (334)
T PRK07565 234 LSGRV-GADLAATTGVHDAEDV-IKMLLAGADVVMI--A--SALLRHG--------PDYIGTILRGLEDWMERHG 294 (334)
T ss_pred HHhhc-CCCEEEECCCCCHHHH-HHHHHcCCCceee--e--hHHhhhC--------cHHHHHHHHHHHHHHHHcC
Confidence 88877 7998444 33343444 4455699996652 1 11 112 4577788888877655444
No 130
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=92.38 E-value=0.96 Score=48.04 Aligned_cols=118 Identities=18% Similarity=0.194 Sum_probs=76.5
Q ss_pred hhHHHHHhCCCCEEEEc--CCCCCCHH-HHHHHHhcCCcEEEe--CCCCC--CHHHHHHHHHHHHh-cCCCCceeecccC
Q psy17999 73 VSFDFLLSANVPFIKIG--SGDSNNIP-LIKYAASKQKPLIIS--TGMLP--SIEHVDNIYTTVKQ-YHSNLSILHCVSA 144 (335)
Q Consensus 73 ~svd~l~~l~v~~~KIa--S~d~~n~~-LL~~~a~~gkPvilS--tG~~~--tl~Ei~~Av~~i~~-g~~~~~~~~c~~g 144 (335)
..++...+.|++.+.|. ..+..|.. .++++-+.|+-+..+ .-.++ |++.+.+.++.+.. |.. .|-+|+..
T Consensus 95 ~~v~~a~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~~~~~~~~Gad--~I~i~Dt~ 172 (582)
T TIGR01108 95 RFVKKAVENGMDVFRIFDALNDPRNLQAAIQAAKKHGAHAQGTISYTTSPVHTLETYLDLAEELLEMGVD--SICIKDMA 172 (582)
T ss_pred HHHHHHHHCCCCEEEEEEecCcHHHHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcCCC--EEEECCCC
Confidence 34677778899987776 23444433 233344467776643 22232 78888888887777 654 56666653
Q ss_pred CCCCCCCcccccCceEEeeecCCCCCCccCCCchHHHHHHHHCCCCCeecCCCCC-C--hHHHHHHHHcCCcEEEe
Q psy17999 145 YPTPYPTVKQYHSNLSILHCVSAYPTPYHDINLNVIHTLRSRYPDIPIGYSGHEN-G--VHVCYAAVAMGAQIIEK 217 (335)
Q Consensus 145 ~~~~~~~~~~~~~~l~llHC~s~YP~~~~~~nL~~i~~L~~~fp~~pVG~SdHt~-g--~~~~~aAvalGA~vIEk 217 (335)
.+=+|..-.+ .+..||+++ ++||++=.|.. | ...+++|+..||++|.-
T Consensus 173 ----------------------G~~~P~~v~~--lv~~lk~~~-~~pi~~H~Hnt~Gla~An~laAveaGa~~vd~ 223 (582)
T TIGR01108 173 ----------------------GILTPKAAYE--LVSALKKRF-GLPVHLHSHATTGMAEMALLKAIEAGADGIDT 223 (582)
T ss_pred ----------------------CCcCHHHHHH--HHHHHHHhC-CCceEEEecCCCCcHHHHHHHHHHhCCCEEEe
Confidence 2223333333 377889999 59999988864 4 66678999999998874
No 131
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=92.26 E-value=1.6 Score=41.63 Aligned_cols=40 Identities=35% Similarity=0.561 Sum_probs=30.9
Q ss_pred HHHHHHHCCCCCeecCCCCC-C--hHHHHHHHHcCCcEEEeccCCC
Q psy17999 180 IHTLRSRYPDIPIGYSGHEN-G--VHVCYAAVAMGAQIIEKHFTLD 222 (335)
Q Consensus 180 i~~L~~~fp~~pVG~SdHt~-g--~~~~~aAvalGA~vIEkH~tld 222 (335)
+..+++.+ ++|+||=.|.. | ..-+++|+..||++|+ .|+.
T Consensus 176 ~~~~~~~~-~~~i~~H~Hn~~Gla~an~~~a~~aG~~~vd--~s~~ 218 (262)
T cd07948 176 VRTLRGVV-SCDIEFHGHNDTGCAIANAYAALEAGATHID--TTVL 218 (262)
T ss_pred HHHHHHhc-CCeEEEEECCCCChHHHHHHHHHHhCCCEEE--Eecc
Confidence 56778888 59999977753 4 5567899999999988 4544
No 132
>PRK00208 thiG thiazole synthase; Reviewed
Probab=92.22 E-value=1 Score=42.89 Aligned_cols=91 Identities=14% Similarity=0.096 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHc---CCceE-eccCChhhHHHHHhCCCCEEEE-----cCC-CCCCHHHHHHHHh-cCCcEEEeCCCCC
Q psy17999 49 EEYVMLQQCADQV---DIMFT-ASAMDQVSFDFLLSANVPFIKI-----GSG-DSNNIPLIKYAAS-KQKPLIISTGMLP 117 (335)
Q Consensus 49 e~~~~L~~~~~~~---Gi~f~-stpfd~~svd~l~~l~v~~~KI-----aS~-d~~n~~LL~~~a~-~gkPvilStG~~~ 117 (335)
.+..++.+.|+++ |+.++ -+.-|..-...++++|++++-. ||+ -+.|..+|+.+.+ .+.|||+.-|-+
T Consensus 107 pd~~~tv~aa~~L~~~Gf~vlpyc~~d~~~ak~l~~~G~~~vmPlg~pIGsg~gi~~~~~i~~i~e~~~vpVIveaGI~- 185 (250)
T PRK00208 107 PDPIETLKAAEILVKEGFVVLPYCTDDPVLAKRLEEAGCAAVMPLGAPIGSGLGLLNPYNLRIIIEQADVPVIVDAGIG- 185 (250)
T ss_pred cCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHcCCCEeCCCCcCCCCCCCCCCHHHHHHHHHhcCCeEEEeCCCC-
Confidence 4688999999999 99999 8888999999999999999833 333 3558999999988 588999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCceeecccCCC
Q psy17999 118 SIEHVDNIYTTVKQYHSNLSILHCVSAYP 146 (335)
Q Consensus 118 tl~Ei~~Av~~i~~g~~~~~~~~c~~g~~ 146 (335)
+.++...|++. |. .-+++-+|+.
T Consensus 186 tpeda~~Amel---GA---dgVlV~SAIt 208 (250)
T PRK00208 186 TPSDAAQAMEL---GA---DAVLLNTAIA 208 (250)
T ss_pred CHHHHHHHHHc---CC---CEEEEChHhh
Confidence 99999999773 43 3455555554
No 133
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=92.11 E-value=8.2 Score=34.28 Aligned_cols=126 Identities=17% Similarity=0.199 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHcCCceEeccCChhhHHHHHhCCCCEEEEcCCCCCCHHHHHHHHhcCCcEEEeCCCCCCHHHHHHHHHHH
Q psy17999 50 EYVMLQQCADQVDIMFTASAMDQVSFDFLLSANVPFIKIGSGDSNNIPLIKYAASKQKPLIISTGMLPSIEHVDNIYTTV 129 (335)
Q Consensus 50 ~~~~L~~~~~~~Gi~f~stpfd~~svd~l~~l~v~~~KIaS~d~~n~~LL~~~a~~gkPvilStG~~~tl~Ei~~Av~~i 129 (335)
....+.+.|+++|+.++..- .++.+.++|++.+-++..++. ..-++..-..+ .+++.... +.+|+..|.+.
T Consensus 45 ~~~~l~~~~~~~~~~l~i~~----~~~la~~~g~~GvHl~~~~~~-~~~~r~~~~~~--~~ig~s~h-~~~e~~~a~~~- 115 (196)
T TIGR00693 45 LAEKLQELCRRYGVPFIVND----RVDLALALGADGVHLGQDDLP-ASEARALLGPD--KIIGVSTH-NLEELAEAEAE- 115 (196)
T ss_pred HHHHHHHHHHHhCCeEEEEC----HHHHHHHcCCCEEecCcccCC-HHHHHHhcCCC--CEEEEeCC-CHHHHHHHhHc-
Confidence 35677899999999999864 468888999999999877653 33333333223 45666666 89888776542
Q ss_pred HhcCCCCceeecccCCCCCCCCcccccCceEEeeecCCCCCCc-----cCCCchHHHHHHHHCCCCCeecCCCCCChHHH
Q psy17999 130 KQYHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYPTPY-----HDINLNVIHTLRSRYPDIPIGYSGHENGVHVC 204 (335)
Q Consensus 130 ~~g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~s~YP~~~-----~~~nL~~i~~L~~~fp~~pVG~SdHt~g~~~~ 204 (335)
|- +++.+ ..-||+.. ...++..+..+++.+|++||--.+-.. ....
T Consensus 116 --g~------------------------dyi~~--~~v~~t~~k~~~~~~~g~~~l~~~~~~~~~~pv~a~GGI~-~~~~ 166 (196)
T TIGR00693 116 --GA------------------------DYIGF--GPIFPTPTKKDPAPPAGVELLREIAATSIDIPIVAIGGIT-LENA 166 (196)
T ss_pred --CC------------------------CEEEE--CCccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEEECCcC-HHHH
Confidence 22 22221 11244432 124678888888777678884333221 2333
Q ss_pred HHHHHcCCc
Q psy17999 205 YAAVAMGAQ 213 (335)
Q Consensus 205 ~aAvalGA~ 213 (335)
..+...||+
T Consensus 167 ~~~~~~G~~ 175 (196)
T TIGR00693 167 AEVLAAGAD 175 (196)
T ss_pred HHHHHcCCC
Confidence 445678887
No 134
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=92.07 E-value=12 Score=35.92 Aligned_cols=187 Identities=13% Similarity=0.118 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHHcCCceEeccCC--hhh----HHHHHhC--CCCEEEE--cC--------CCCCCHHHHHHH----Hh-c
Q psy17999 49 EEYVMLQQCADQVDIMFTASAMD--QVS----FDFLLSA--NVPFIKI--GS--------GDSNNIPLIKYA----AS-K 105 (335)
Q Consensus 49 e~~~~L~~~~~~~Gi~f~stpfd--~~s----vd~l~~l--~v~~~KI--aS--------~d~~n~~LL~~~----a~-~ 105 (335)
.+++.+....++.+.+++.+.+. .+. ++.+++. ++++|-| ++ .-+.+..++.++ .+ .
T Consensus 77 ~~~~~~~~~~~~~~~pl~~qi~g~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~~~g~~l~~~~~~~~eiv~~vr~~~ 156 (300)
T TIGR01037 77 AFLEELKPVREEFPTPLIASVYGSSVEEFAEVAEKLEKAPPYVDAYELNLSCPHVKGGGIAIGQDPELSADVVKAVKDKT 156 (300)
T ss_pred HHHHHHHHHhccCCCcEEEEeecCCHHHHHHHHHHHHhccCccCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhc
Confidence 34556666677777788888744 333 3344433 2677766 32 223556655444 33 4
Q ss_pred CCcEEEeCCCCCCHHHHHHHHHHHHh-cCCCCceeecccCCCCCCCCcccccCceEEeeecCCCCCC-ccCCCchHHHHH
Q psy17999 106 QKPLIISTGMLPSIEHVDNIYTTVKQ-YHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYPTP-YHDINLNVIHTL 183 (335)
Q Consensus 106 gkPvilStG~~~tl~Ei~~Av~~i~~-g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~s~YP~~-~~~~nL~~i~~L 183 (335)
++||.++... +.+|+...++.+.. |-. .+....++.....+... ....+-.....|--+ ...+.+..+..+
T Consensus 157 ~~pv~vKi~~--~~~~~~~~a~~l~~~G~d---~i~v~nt~~~~~~~~~~--~~~~~~~~~gg~sg~~~~~~~l~~v~~i 229 (300)
T TIGR01037 157 DVPVFAKLSP--NVTDITEIAKAAEEAGAD---GLTLINTLRGMKIDIKT--GKPILANKTGGLSGPAIKPIALRMVYDV 229 (300)
T ss_pred CCCEEEECCC--ChhhHHHHHHHHHHcCCC---EEEEEccCCcccccccc--CceeeCCCCccccchhhhHHHHHHHHHH
Confidence 8999999863 66777777777766 432 11111100000000000 000000000011111 112456788888
Q ss_pred HHHCCCCCeecCCCCCChHHHHHHHHcCCcEEEeccCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhC
Q psy17999 184 RSRYPDIPIGYSGHENGVHVCYAAVAMGAQIIEKHFTLDKSWKGSDHASSLTPPELKALVTGIRDIEQSLG 254 (335)
Q Consensus 184 ~~~fp~~pVG~SdHt~g~~~~~aAvalGA~vIEkH~tld~~~~G~Dh~~Sl~p~el~~lv~~ir~~~~alG 254 (335)
++.. ++||.-.+--....-+..++..||+.+- +-|..- .+|.-+.++.+.+++.-...|
T Consensus 230 ~~~~-~ipvi~~GGI~s~~da~~~l~~GAd~V~----igr~~l-------~~p~~~~~i~~~l~~~~~~~g 288 (300)
T TIGR01037 230 YKMV-DIPIIGVGGITSFEDALEFLMAGASAVQ----VGTAVY-------YRGFAFKKIIEGLIAFLKAEG 288 (300)
T ss_pred HhcC-CCCEEEECCCCCHHHHHHHHHcCCCcee----ecHHHh-------cCchHHHHHHHHHHHHHHHcC
Confidence 8888 7999655544445566667778998665 222211 246678888888877766655
No 135
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=92.04 E-value=4.2 Score=39.84 Aligned_cols=148 Identities=11% Similarity=0.075 Sum_probs=74.9
Q ss_pred cCCceEeccCChh----------hHHHHHhCC--CCEEEE--------cCCCCCCHHHHHH----HHh-cC-----CcEE
Q psy17999 61 VDIMFTASAMDQV----------SFDFLLSAN--VPFIKI--------GSGDSNNIPLIKY----AAS-KQ-----KPLI 110 (335)
Q Consensus 61 ~Gi~f~stpfd~~----------svd~l~~l~--v~~~KI--------aS~d~~n~~LL~~----~a~-~g-----kPvi 110 (335)
.++.++.+.+-.. -++.+.+++ +|++-+ +.+...+...+++ +.+ ++ +||+
T Consensus 127 ~~~plivsi~g~~~~~~~~~~~d~~~~~~~~~~~ad~ielN~scP~~~g~~~~~~~~~~~~iv~av~~~~~~~~~~~Pv~ 206 (327)
T cd04738 127 RGGPLGVNIGKNKDTPLEDAVEDYVIGVRKLGPYADYLVVNVSSPNTPGLRDLQGKEALRELLTAVKEERNKLGKKVPLL 206 (327)
T ss_pred CCCeEEEEEeCCCCCcccccHHHHHHHHHHHHhhCCEEEEECCCCCCCccccccCHHHHHHHHHHHHHHHhhcccCCCeE
Confidence 6788888885432 222223333 677665 2233444455544 333 23 8999
Q ss_pred EeCCCCCCHHHHHHHHHHHHh-cCCCCceeecccCCCCCCCCcccccCceEEeeecCCCCCCc-cCCCchHHHHHHHHCC
Q psy17999 111 ISTGMLPSIEHVDNIYTTVKQ-YHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYPTPY-HDINLNVIHTLRSRYP 188 (335)
Q Consensus 111 lStG~~~tl~Ei~~Av~~i~~-g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~s~YP~~~-~~~nL~~i~~L~~~fp 188 (335)
++.....+.+++...++.+.. |-. .+..-..+... . ...+...-+-...|..+. ....|+.+..+++..+
T Consensus 207 vKl~~~~~~~~~~~ia~~l~~aGad---~I~~~n~~~~~-~----~~~~~~~~~~~gG~sG~~~~~~~l~~v~~l~~~~~ 278 (327)
T cd04738 207 VKIAPDLSDEELEDIADVALEHGVD---GIIATNTTISR-P----GLLRSPLANETGGLSGAPLKERSTEVLRELYKLTG 278 (327)
T ss_pred EEeCCCCCHHHHHHHHHHHHHcCCc---EEEEECCcccc-c----ccccccccCCCCccCChhhhHHHHHHHHHHHHHhC
Confidence 998865577788888887776 432 11111100000 0 000000000011232222 2255888999998774
Q ss_pred -CCCeecCCCCCChHHHHHHHHcCCcEEE
Q psy17999 189 -DIPIGYSGHENGVHVCYAAVAMGAQIIE 216 (335)
Q Consensus 189 -~~pVG~SdHt~g~~~~~aAvalGA~vIE 216 (335)
++||.-++=-....-+...+..||+.+.
T Consensus 279 ~~ipIi~~GGI~t~~da~e~l~aGAd~V~ 307 (327)
T cd04738 279 GKIPIIGVGGISSGEDAYEKIRAGASLVQ 307 (327)
T ss_pred CCCcEEEECCCCCHHHHHHHHHcCCCHHh
Confidence 5788444322223444455668998665
No 136
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=92.02 E-value=2.7 Score=38.86 Aligned_cols=83 Identities=14% Similarity=0.149 Sum_probs=67.8
Q ss_pred CCHHHHHHHHHHHHHcCCceEeccCChhhHHHHHhCCCCEEEEcCCCCCC-HHHHHHHHhc--CCcEEEeCCCCCCHHHH
Q psy17999 46 FSQEEYVMLQQCADQVDIMFTASAMDQVSFDFLLSANVPFIKIGSGDSNN-IPLIKYAASK--QKPLIISTGMLPSIEHV 122 (335)
Q Consensus 46 l~~e~~~~L~~~~~~~Gi~f~stpfd~~svd~l~~l~v~~~KIaS~d~~n-~~LL~~~a~~--gkPvilStG~~~tl~Ei 122 (335)
+|.-.-.++.++|+++|+.++--++++..+-.+.++|.+++|+=-.+... ..+++.+..- +.|++ -||+- ++
T Consensus 85 vsP~~~~~v~~~~~~~~i~~iPG~~TptEi~~A~~~Ga~~vKlFPA~~~GG~~yikal~~plp~i~~~-ptGGV-~~--- 159 (204)
T TIGR01182 85 VSPGLTPELAKHAQDHGIPIIPGVATPSEIMLALELGITALKLFPAEVSGGVKMLKALAGPFPQVRFC-PTGGI-NL--- 159 (204)
T ss_pred ECCCCCHHHHHHHHHcCCcEECCCCCHHHHHHHHHCCCCEEEECCchhcCCHHHHHHHhccCCCCcEE-ecCCC-CH---
Confidence 45555678999999999999999999999999999999999999888776 8999998863 55665 77766 55
Q ss_pred HHHHHHHHhcC
Q psy17999 123 DNIYTTVKQYH 133 (335)
Q Consensus 123 ~~Av~~i~~g~ 133 (335)
+++-+++..|.
T Consensus 160 ~N~~~~l~aGa 170 (204)
T TIGR01182 160 ANVRDYLAAPN 170 (204)
T ss_pred HHHHHHHhCCC
Confidence 45557777653
No 137
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=92.01 E-value=1.2 Score=46.32 Aligned_cols=79 Identities=16% Similarity=0.233 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHc-CCceEe-ccCChhhHHHHHhCCCCEEEEc--CC--CCC---------CHHH---H-HHHHhcCCcE
Q psy17999 49 EEYVMLQQCADQV-DIMFTA-SAMDQVSFDFLLSANVPFIKIG--SG--DSN---------NIPL---I-KYAASKQKPL 109 (335)
Q Consensus 49 e~~~~L~~~~~~~-Gi~f~s-tpfd~~svd~l~~l~v~~~KIa--S~--d~~---------n~~L---L-~~~a~~gkPv 109 (335)
..+..+++..+++ ++.+++ ++.+.+.+..+.+.|+|++|++ ++ ..+ .+.. + +.+.+.+.||
T Consensus 268 ~~~~~i~~ik~~~~~~~v~aG~V~t~~~a~~~~~aGad~I~vg~g~Gs~~~t~~~~~~g~p~~~ai~~~~~~~~~~~v~v 347 (495)
T PTZ00314 268 YQIDMIKKLKSNYPHVDIIAGNVVTADQAKNLIDAGADGLRIGMGSGSICITQEVCAVGRPQASAVYHVARYARERGVPC 347 (495)
T ss_pred HHHHHHHHHHhhCCCceEEECCcCCHHHHHHHHHcCCCEEEECCcCCcccccchhccCCCChHHHHHHHHHHHhhcCCeE
Confidence 3345555555564 688888 9999999999999999999975 22 222 1122 2 2233468999
Q ss_pred EEeCCCCCCHHHHHHHHHH
Q psy17999 110 IISTGMLPSIEHVDNIYTT 128 (335)
Q Consensus 110 ilStG~~~tl~Ei~~Av~~ 128 (335)
|-+-|.. +..|+.+|+..
T Consensus 348 IadGGi~-~~~di~kAla~ 365 (495)
T PTZ00314 348 IADGGIK-NSGDICKALAL 365 (495)
T ss_pred EecCCCC-CHHHHHHHHHc
Confidence 9999999 99999999763
No 138
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=91.99 E-value=4.6 Score=35.98 Aligned_cols=141 Identities=13% Similarity=0.126 Sum_probs=85.4
Q ss_pred CCHHHHHHHHHHHHHcCCceEe--ccCCh--hhHHHHHhCCCCEEEEcCCCCC--CHHHHHHHHhcCCcEEEe-CCCCCC
Q psy17999 46 FSQEEYVMLQQCADQVDIMFTA--SAMDQ--VSFDFLLSANVPFIKIGSGDSN--NIPLIKYAASKQKPLIIS-TGMLPS 118 (335)
Q Consensus 46 l~~e~~~~L~~~~~~~Gi~f~s--tpfd~--~svd~l~~l~v~~~KIaS~d~~--n~~LL~~~a~~gkPvilS-tG~~~t 118 (335)
++.+..+.++++. .++.++. ++.+. ..++.+.+.|++++-+...... ...+++++.+.|+++++. -|.. |
T Consensus 39 ~g~~~i~~i~~~~--~~~~i~~~~~v~~~~~~~~~~~~~aGad~i~~h~~~~~~~~~~~i~~~~~~g~~~~v~~~~~~-t 115 (202)
T cd04726 39 EGMEAVRALREAF--PDKIIVADLKTADAGALEAEMAFKAGADIVTVLGAAPLSTIKKAVKAAKKYGKEVQVDLIGVE-D 115 (202)
T ss_pred hCHHHHHHHHHHC--CCCEEEEEEEeccccHHHHHHHHhcCCCEEEEEeeCCHHHHHHHHHHHHHcCCeEEEEEeCCC-C
Confidence 3456666665542 2555554 44454 3567888999999998775532 346788888889999986 6666 8
Q ss_pred HHHHHHHHHHHHhcCCCCceeecccCCCCCCCCcccccCceEEeeecCCCCCCc--cCCCchHHHHHHHHCCCCCeecCC
Q psy17999 119 IEHVDNIYTTVKQYHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYPTPY--HDINLNVIHTLRSRYPDIPIGYSG 196 (335)
Q Consensus 119 l~Ei~~Av~~i~~g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~s~YP~~~--~~~nL~~i~~L~~~fp~~pVG~Sd 196 (335)
.+|+..+++. + . +++.++ -.|++.. .......+..+++.. ++||.-.+
T Consensus 116 ~~e~~~~~~~---~-~-----------------------d~v~~~--~~~~~~~~~~~~~~~~i~~~~~~~-~~~i~~~G 165 (202)
T cd04726 116 PEKRAKLLKL---G-V-----------------------DIVILH--RGIDAQAAGGWWPEDDLKKVKKLL-GVKVAVAG 165 (202)
T ss_pred HHHHHHHHHC---C-C-----------------------CEEEEc--CcccccccCCCCCHHHHHHHHhhc-CCCEEEEC
Confidence 8888764331 2 2 344442 1122211 133466677777654 78886554
Q ss_pred CCCChHHHHHHHHcCCc--EEEeccC
Q psy17999 197 HENGVHVCYAAVAMGAQ--IIEKHFT 220 (335)
Q Consensus 197 Ht~g~~~~~aAvalGA~--vIEkH~t 220 (335)
.-. ......+...||+ ++=..++
T Consensus 166 GI~-~~~i~~~~~~Gad~vvvGsai~ 190 (202)
T cd04726 166 GIT-PDTLPEFKKAGADIVIVGRAIT 190 (202)
T ss_pred CcC-HHHHHHHHhcCCCEEEEeehhc
Confidence 332 4455567788998 5555544
No 139
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=91.90 E-value=7.9 Score=33.65 Aligned_cols=126 Identities=16% Similarity=0.156 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHcCCceEeccCChhhHHHHHhCCCCEEEEcCCCCCCHHHHHHHHhcCCcEEEeCCCCCCHHHHHHHHHHH
Q psy17999 50 EYVMLQQCADQVDIMFTASAMDQVSFDFLLSANVPFIKIGSGDSNNIPLIKYAASKQKPLIISTGMLPSIEHVDNIYTTV 129 (335)
Q Consensus 50 ~~~~L~~~~~~~Gi~f~stpfd~~svd~l~~l~v~~~KIaS~d~~n~~LL~~~a~~gkPvilStG~~~tl~Ei~~Av~~i 129 (335)
....+.+.|+..|+.++.. ..++.+.++|++++-++..+.. ..-++++...++.+-+++ . |.+|+..+.+.
T Consensus 44 ~~~~i~~~~~~~~~~l~~~----~~~~~a~~~g~~~vh~~~~~~~-~~~~~~~~~~~~~~g~~~--~-t~~~~~~~~~~- 114 (196)
T cd00564 44 LARALRELCRKYGVPLIIN----DRVDLALAVGADGVHLGQDDLP-VAEARALLGPDLIIGVST--H-SLEEALRAEEL- 114 (196)
T ss_pred HHHHHHHHHHHhCCeEEEe----ChHHHHHHcCCCEEecCcccCC-HHHHHHHcCCCCEEEeeC--C-CHHHHHHHhhc-
Confidence 3567778888899988874 2467788899999887765542 334444443445455554 5 78777766432
Q ss_pred HhcCCCCceeecccCCCCCCCCcccccCceEEeeecCCCCCCc-----cCCCchHHHHHHHHCCCCCeecCCCCCChHHH
Q psy17999 130 KQYHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYPTPY-----HDINLNVIHTLRSRYPDIPIGYSGHENGVHVC 204 (335)
Q Consensus 130 ~~g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~s~YP~~~-----~~~nL~~i~~L~~~fp~~pVG~SdHt~g~~~~ 204 (335)
| . +++++..+ ||+.. ....+..+..+++.. ++||.-.+=. ...-.
T Consensus 115 --g-~-----------------------d~i~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~pv~a~GGi-~~~~i 164 (196)
T cd00564 115 --G-A-----------------------DYVGFGPV--FPTPTKPGAGPPLGLELLREIAELV-EIPVVAIGGI-TPENA 164 (196)
T ss_pred --C-C-----------------------CEEEECCc--cCCCCCCCCCCCCCHHHHHHHHHhC-CCCEEEECCC-CHHHH
Confidence 2 2 44444333 44422 235577788888765 7888433211 13344
Q ss_pred HHHHHcCCcE
Q psy17999 205 YAAVAMGAQI 214 (335)
Q Consensus 205 ~aAvalGA~v 214 (335)
..+..+||+.
T Consensus 165 ~~~~~~Ga~~ 174 (196)
T cd00564 165 AEVLAAGADG 174 (196)
T ss_pred HHHHHcCCCE
Confidence 4566788883
No 140
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=91.87 E-value=9.7 Score=35.45 Aligned_cols=134 Identities=14% Similarity=0.121 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHcCCce--EeccCChhhHHHHHhCCCCEEEEcCCCCCCHHHHHHHHhc-CC-cEEEeC---CC-------
Q psy17999 50 EYVMLQQCADQVDIMF--TASAMDQVSFDFLLSANVPFIKIGSGDSNNIPLIKYAASK-QK-PLIIST---GM------- 115 (335)
Q Consensus 50 ~~~~L~~~~~~~Gi~f--~stpfd~~svd~l~~l~v~~~KIaS~d~~n~~LL~~~a~~-gk-PvilSt---G~------- 115 (335)
....+.+.++..++++ ---.-+.++++.+...|++-+-|+|.-.+| .+++++++. +. -+++|- +.
T Consensus 66 n~~~i~~i~~~~~~~v~vgGGir~~edv~~~l~~Ga~~viigt~~~~~-~~~~~~~~~~~~~~iivslD~~~~~~~~~~~ 144 (233)
T cd04723 66 NDEAIRELAAAWPLGLWVDGGIRSLENAQEWLKRGASRVIVGTETLPS-DDDEDRLAALGEQRLVLSLDFRGGQLLKPTD 144 (233)
T ss_pred cHHHHHHHHHhCCCCEEEecCcCCHHHHHHHHHcCCCeEEEcceeccc-hHHHHHHHhcCCCCeEEEEeccCCeeccccC
Confidence 4666777777765544 445678889999999999999999999999 999887764 55 577763 22
Q ss_pred CCCHHHHHHHHHHHHhcCCCCceeecccCCCCCCCCcccccCceEEeeecCCCCCCccCCCchHHHHHHHHCCCCCeecC
Q psy17999 116 LPSIEHVDNIYTTVKQYHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYPTPYHDINLNVIHTLRSRYPDIPIGYS 195 (335)
Q Consensus 116 ~~tl~Ei~~Av~~i~~g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~s~YP~~~~~~nL~~i~~L~~~fp~~pVG~S 195 (335)
..++.|+.+ .+... . +.+.++.+...= .....|+..+..+.+.. ++||-++
T Consensus 145 ~~~~~~~~~---~~~~~-~----------------------~~li~~di~~~G--~~~g~~~~~~~~i~~~~-~ipvi~~ 195 (233)
T cd04723 145 FIGPEELLR---RLAKW-P----------------------EELIVLDIDRVG--SGQGPDLELLERLAARA-DIPVIAA 195 (233)
T ss_pred cCCHHHHHH---HHHHh-C----------------------CeEEEEEcCccc--cCCCcCHHHHHHHHHhc-CCCEEEe
Confidence 113444433 33322 2 034444433211 12568888899998876 8999999
Q ss_pred CCCCChHHHHHHHHcCCc
Q psy17999 196 GHENGVHVCYAAVAMGAQ 213 (335)
Q Consensus 196 dHt~g~~~~~aAvalGA~ 213 (335)
+.-....-...+..+||.
T Consensus 196 GGi~s~edi~~l~~~G~~ 213 (233)
T cd04723 196 GGVRSVEDLELLKKLGAS 213 (233)
T ss_pred CCCCCHHHHHHHHHcCCC
Confidence 888777767777788987
No 141
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=91.84 E-value=1.4 Score=44.29 Aligned_cols=76 Identities=14% Similarity=0.227 Sum_probs=58.1
Q ss_pred HHHHHHHHHHcCCceEe-ccCChhhHHHHHhCCCCEEEEcCCC--CC------CHHHHHH---HH--------hcC---C
Q psy17999 51 YVMLQQCADQVDIMFTA-SAMDQVSFDFLLSANVPFIKIGSGD--SN------NIPLIKY---AA--------SKQ---K 107 (335)
Q Consensus 51 ~~~L~~~~~~~Gi~f~s-tpfd~~svd~l~~l~v~~~KIaS~d--~~------n~~LL~~---~a--------~~g---k 107 (335)
+..|.+.+++.++++++ .+++.+.+..+.+.|+|++.++.+- .+ ..|++.. ++ +++ .
T Consensus 177 p~~l~~~i~~~~IPVI~G~V~t~e~A~~~~~aGaDgV~~G~gg~~~~~~~lg~~~p~~~ai~d~~~a~~~~~~e~g~r~v 256 (369)
T TIGR01304 177 PLNLKEFIGELDVPVIAGGVNDYTTALHLMRTGAAGVIVGPGGANTTRLVLGIEVPMATAIADVAAARRDYLDETGGRYV 256 (369)
T ss_pred HHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHcCCCEEEECCCCCcccccccCCCCCHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 55678888899999998 8999999988888999999977432 11 1453333 32 133 8
Q ss_pred cEEEeCCCCCCHHHHHHHHH
Q psy17999 108 PLIISTGMLPSIEHVDNIYT 127 (335)
Q Consensus 108 PvilStG~~~tl~Ei~~Av~ 127 (335)
|||-+-|.. +-.++.+|+.
T Consensus 257 pVIAdGGI~-tg~di~kAlA 275 (369)
T TIGR01304 257 HVIADGGIE-TSGDLVKAIA 275 (369)
T ss_pred eEEEeCCCC-CHHHHHHHHH
Confidence 999999999 9999999875
No 142
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=91.77 E-value=1.2 Score=40.56 Aligned_cols=75 Identities=16% Similarity=0.263 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHcCCce--E-ec-cCChhh----HHHHHhCCCCEEEEcCCCC------CCHHHHHHHHhcCCcEEEeCC
Q psy17999 49 EEYVMLQQCADQVDIMF--T-AS-AMDQVS----FDFLLSANVPFIKIGSGDS------NNIPLIKYAASKQKPLIISTG 114 (335)
Q Consensus 49 e~~~~L~~~~~~~Gi~f--~-st-pfd~~s----vd~l~~l~v~~~KIaS~d~------~n~~LL~~~a~~gkPvilStG 114 (335)
+++.++.+.|+ |+.+ + -+ ..+.+. ...+.++|+|++|..++-. .+..+++++.+.+.||.+|=|
T Consensus 105 ~ei~~v~~~~~--g~~lkvI~e~~~l~~~~i~~a~ria~e~GaD~IKTsTG~~~~~at~~~v~~~~~~~~~~v~ik~aGG 182 (203)
T cd00959 105 EEIAAVVEACG--GAPLKVILETGLLTDEEIIKACEIAIEAGADFIKTSTGFGPGGATVEDVKLMKEAVGGRVGVKAAGG 182 (203)
T ss_pred HHHHHHHHhcC--CCeEEEEEecCCCCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHhCCCceEEEeCC
Confidence 67888888887 5553 2 22 233233 3556678999999998876 777888888777789999988
Q ss_pred CCCCHHHHHHHH
Q psy17999 115 MLPSIEHVDNIY 126 (335)
Q Consensus 115 ~~~tl~Ei~~Av 126 (335)
-. |+++..+-+
T Consensus 183 ik-t~~~~l~~~ 193 (203)
T cd00959 183 IR-TLEDALAMI 193 (203)
T ss_pred CC-CHHHHHHHH
Confidence 88 766655433
No 143
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=91.67 E-value=6.4 Score=41.17 Aligned_cols=143 Identities=13% Similarity=0.087 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHc-CCceEeccCChhhHHHHHhCCCCEEEEcCCCCCCHHHHHHHHhcCCcEEEeCCC-CCCHHHHHHHHH
Q psy17999 50 EYVMLQQCADQV-DIMFTASAMDQVSFDFLLSANVPFIKIGSGDSNNIPLIKYAASKQKPLIISTGM-LPSIEHVDNIYT 127 (335)
Q Consensus 50 ~~~~L~~~~~~~-Gi~f~stpfd~~svd~l~~l~v~~~KIaS~d~~n~~LL~~~a~~gkPvilStG~-~~tl~Ei~~Av~ 127 (335)
...++.+..++. ++.+...-++.+-++...+.|++++-=-|+. +...++.-+++.|.|+|+-... ....+...+.++
T Consensus 195 ~v~~~V~~l~~~~~~pISIDT~~~~v~eaAL~aGAdiINsVs~~-~~d~~~~l~a~~g~~vVlm~~~~~~~~~~l~~~ie 273 (499)
T TIGR00284 195 VVKEKVKTALDALDSPVIADTPTLDELYEALKAGASGVIMPDVE-NAVELASEKKLPEDAFVVVPGNQPTNYEELAKAVK 273 (499)
T ss_pred HHHHHHHHHHhhCCCcEEEeCCCHHHHHHHHHcCCCEEEECCcc-chhHHHHHHHHcCCeEEEEcCCCCchHHHHHHHHH
Confidence 355666666665 8999999999999999999999987755553 3346667788888888886532 224577777777
Q ss_pred HHHh-cCCCCceeecccCCCCCCCCcccccCceEEeeecCCCCCCc-cCCCchHHHHHHHHCCCCCe--ecCCC------
Q psy17999 128 TVKQ-YHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYPTPY-HDINLNVIHTLRSRYPDIPI--GYSGH------ 197 (335)
Q Consensus 128 ~i~~-g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~s~YP~~~-~~~nL~~i~~L~~~fp~~pV--G~SdH------ 197 (335)
.+.+ |-. -++.+-|+. |.+. ---+|..+..+|++| ++|+ |.|--
T Consensus 274 ~a~~~Gi~---~IIlDPglg----------------------~~~~~l~~sL~~l~~~r~~~-~~Pil~GvSNvtel~da 327 (499)
T TIGR00284 274 KLRTSGYS---KVAADPSLS----------------------PPLLGLLESIIRFRRASRLL-NVPLVFGAANVTELVDA 327 (499)
T ss_pred HHHHCCCC---cEEEeCCCC----------------------cchHHHHHHHHHHHHHHHhc-CCcEEEeeccccCCCcc
Confidence 7765 432 133333332 1111 112234444445678 5886 76633
Q ss_pred -CCChHH--HHHHHHcCCcEEEecc
Q psy17999 198 -ENGVHV--CYAAVAMGAQIIEKHF 219 (335)
Q Consensus 198 -t~g~~~--~~aAvalGA~vIEkH~ 219 (335)
+.|..+ +.+|+..||++|=-|=
T Consensus 328 Ds~g~naal~~~a~e~Ga~ilrvhd 352 (499)
T TIGR00284 328 DSHGVNALLAAIALEAGASILYVVE 352 (499)
T ss_pred chhHHHHHHHHHHHHcCCCEEEEcC
Confidence 234333 3567788999998773
No 144
>PRK12756 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional
Probab=91.64 E-value=0.53 Score=46.80 Aligned_cols=71 Identities=10% Similarity=0.127 Sum_probs=60.3
Q ss_pred HHHcCCceEeccCChhhHHHHHhCCCCEEEEcCCCCCCHHHHHHHHhcCCcEEEeCCCCCCHHHHHHHHHHH
Q psy17999 58 ADQVDIMFTASAMDQVSFDFLLSANVPFIKIGSGDSNNIPLIKYAASKQKPLIISTGMLPSIEHVDNIYTTV 129 (335)
Q Consensus 58 ~~~~Gi~f~stpfd~~svd~l~~l~v~~~KIaS~d~~n~~LL~~~a~~gkPvilStG~~~tl~Ei~~Av~~i 129 (335)
..+.|+++.++..|+....++.++ +..-.||++.+.|..+.+.++....||-++.|..+++....+|+..-
T Consensus 132 i~~~GlP~atE~ld~~~~qY~~Dl-iSwgaIGARt~esq~hre~ASgls~PVgfKN~t~g~i~~aidAi~aa 202 (348)
T PRK12756 132 INELGLPTATEFLDMVTGQYIADL-ISWGAIGARTTESQIHREMASALSCPVGFKNGTDGNTRIAIDAIRAA 202 (348)
T ss_pred HHHcCCceeehhcccccHHHHHHH-HhhhhhccccccCHHHHHHHhcCCCceEecCCCCCCHHHHHHHHHHH
Confidence 479999999999999888887766 44449999999999998888899999999999887877777766543
No 145
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional
Probab=91.61 E-value=1.4 Score=41.60 Aligned_cols=112 Identities=13% Similarity=0.104 Sum_probs=72.6
Q ss_pred CHHHHHHHHHHHHHcCCceEeccCCh----------hhHHHHHhCCCCEEEEcCCC---CCCHHHHHHHHh-----cCCc
Q psy17999 47 SQEEYVMLQQCADQVDIMFTASAMDQ----------VSFDFLLSANVPFIKIGSGD---SNNIPLIKYAAS-----KQKP 108 (335)
Q Consensus 47 ~~e~~~~L~~~~~~~Gi~f~stpfd~----------~svd~l~~l~v~~~KIaS~d---~~n~~LL~~~a~-----~gkP 108 (335)
+.+.+.+|.+.+++.|..++.|-+|. +-++.+.++|.|++||+..- -.+..|++...+ .++|
T Consensus 120 ~~~~~~~l~~~~~~~~~kvI~S~H~f~~tP~~~~l~~~~~~~~~~gaDivKia~~a~~~~D~~~ll~~~~~~~~~~~~~P 199 (253)
T PRK02412 120 GKDVVKEMVAFAHEHGVKVVLSYHDFEKTPPKEEIVERLRKMESLGADIVKIAVMPQSEQDVLTLLNATREMKELYADQP 199 (253)
T ss_pred ChHHHHHHHHHHHHcCCEEEEeeCCCCCCcCHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHHHHHHHHHhcCCCCC
Confidence 45678889999999999999999862 12445566799999998763 344555554432 3678
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHhcCCCCceeecccCCCCCCCCcccccCceEEeeecCCCCCCccCCCchHHHHHHHHC
Q psy17999 109 LIISTGMLPSIEHVDNIYTTVKQYHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYPTPYHDINLNVIHTLRSRY 187 (335)
Q Consensus 109 vilStG~~~tl~Ei~~Av~~i~~g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~s~YP~~~~~~nL~~i~~L~~~f 187 (335)
+| ..+|+ .+.-+-+.+.-+- |. .+-||.-..|+.+.++.+..+..+.+.+
T Consensus 200 ~i-~~~MG-~~G~~SRil~~~~-GS--------------------------~~ty~~~~~~sAPGQ~~~~el~~i~~~l 249 (253)
T PRK02412 200 LI-TMSMG-KLGRISRLAGEVF-GS--------------------------SWTFASLDKASAPGQISVEDLRRILEIL 249 (253)
T ss_pred EE-EEeCC-CCchHHHcchhhh-CC--------------------------cceecCCCCCCCCCCCCHHHHHHHHHHh
Confidence 76 33444 3333333322111 11 2356666677788899999888887766
No 146
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=91.52 E-value=6.8 Score=38.35 Aligned_cols=100 Identities=16% Similarity=0.217 Sum_probs=63.9
Q ss_pred cCCCCCCHHHHHHHHh-----cCCcEEEeC--CCCCCHHHHHHHHHHHHhcCCCCceeecccCCCCCCCCcccccCceEE
Q psy17999 89 GSGDSNNIPLIKYAAS-----KQKPLIIST--GMLPSIEHVDNIYTTVKQYHSNLSILHCVSAYPTPYPTVKQYHSNLSI 161 (335)
Q Consensus 89 aS~d~~n~~LL~~~a~-----~gkPvilSt--G~~~tl~Ei~~Av~~i~~g~~~~~~~~c~~g~~~~~~~~~~~~~~l~l 161 (335)
||.-+.|.+++.++.+ .+.||.++. |...+..++.+.++.+.+.+. +...
T Consensus 111 Gs~ll~~p~~~~eiv~av~~a~d~pv~vKiR~G~~~~~~~~~~~a~~le~~G~-----------------------d~i~ 167 (321)
T PRK10415 111 GSALLQYPDLVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCVEIAQLAEDCGI-----------------------QALT 167 (321)
T ss_pred ccHHhcCHHHHHHHHHHHHHhcCCceEEEEEccccCCcchHHHHHHHHHHhCC-----------------------CEEE
Confidence 6668899999988665 367998776 433233345555555555222 5566
Q ss_pred eeecCCCCCCc-cCCCchHHHHHHHHCCCCCeecCCCCCChHHHHHHHH-cCCc
Q psy17999 162 LHCVSAYPTPY-HDINLNVIHTLRSRYPDIPIGYSGHENGVHVCYAAVA-MGAQ 213 (335)
Q Consensus 162 lHC~s~YP~~~-~~~nL~~i~~L~~~fp~~pVG~SdHt~g~~~~~aAva-lGA~ 213 (335)
+|+-+. +..+ ...|+..|..+++.. ++||..++=-....-+..++. .||+
T Consensus 168 vh~rt~-~~~~~G~a~~~~i~~ik~~~-~iPVI~nGgI~s~~da~~~l~~~gad 219 (321)
T PRK10415 168 IHGRTR-ACLFNGEAEYDSIRAVKQKV-SIPVIANGDITDPLKARAVLDYTGAD 219 (321)
T ss_pred EecCcc-ccccCCCcChHHHHHHHHhc-CCcEEEeCCCCCHHHHHHHHhccCCC
Confidence 787652 2222 347899999999988 899977665544555555554 4665
No 147
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=91.37 E-value=1.6 Score=40.41 Aligned_cols=83 Identities=17% Similarity=0.133 Sum_probs=65.1
Q ss_pred CCHHHHHHHHHHHHHcCCceEeccCChhhHHHHHhCCCCEEEEcCCCCCCHHHHHHHHhc--CCcEEEeCCCCCCHHHHH
Q psy17999 46 FSQEEYVMLQQCADQVDIMFTASAMDQVSFDFLLSANVPFIKIGSGDSNNIPLIKYAASK--QKPLIISTGMLPSIEHVD 123 (335)
Q Consensus 46 l~~e~~~~L~~~~~~~Gi~f~stpfd~~svd~l~~l~v~~~KIaS~d~~n~~LL~~~a~~--gkPvilStG~~~tl~Ei~ 123 (335)
+|.-.-.++.++|++.||.++--++++..+..+.++|+|++|+=..+..-...|+.+..- +.|++ -||+= +. +
T Consensus 93 vsP~~~~~v~~~~~~~~i~~iPG~~T~~E~~~A~~~Gad~vklFPa~~~G~~~ik~l~~~~p~ip~~-atGGI-~~---~ 167 (213)
T PRK06552 93 VSPSFNRETAKICNLYQIPYLPGCMTVTEIVTALEAGSEIVKLFPGSTLGPSFIKAIKGPLPQVNVM-VTGGV-NL---D 167 (213)
T ss_pred ECCCCCHHHHHHHHHcCCCEECCcCCHHHHHHHHHcCCCEEEECCcccCCHHHHHHHhhhCCCCEEE-EECCC-CH---H
Confidence 566667899999999999999999999999999999999999954455568888888763 47766 66655 55 4
Q ss_pred HHHHHHHhcC
Q psy17999 124 NIYTTVKQYH 133 (335)
Q Consensus 124 ~Av~~i~~g~ 133 (335)
++-+++..|.
T Consensus 168 N~~~~l~aGa 177 (213)
T PRK06552 168 NVKDWFAAGA 177 (213)
T ss_pred HHHHHHHCCC
Confidence 4556666553
No 148
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=91.27 E-value=6 Score=39.16 Aligned_cols=145 Identities=14% Similarity=0.156 Sum_probs=86.5
Q ss_pred CCHHHHHHHHHHHHHcCCceEec----cCChhhHHHHHhCCC--CEEEEcCCCCCCHHH---HHHHHhc--CCcEEEeCC
Q psy17999 46 FSQEEYVMLQQCADQVDIMFTAS----AMDQVSFDFLLSANV--PFIKIGSGDSNNIPL---IKYAASK--QKPLIISTG 114 (335)
Q Consensus 46 l~~e~~~~L~~~~~~~Gi~f~st----pfd~~svd~l~~l~v--~~~KIaS~d~~n~~L---L~~~a~~--gkPvilStG 114 (335)
++.|+.....+.++..|+.+..+ +.+.+.++.|.+.|+ |++.|-+.+=.+..+ ++++-+. +.|||...
T Consensus 69 ~~~e~~~~~~r~~~~~~l~v~~~vg~~~~~~~~~~~Lv~ag~~~d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~g~- 147 (326)
T PRK05458 69 FDPEARIPFIKDMHEQGLIASISVGVKDDEYDFVDQLAAEGLTPEYITIDIAHGHSDSVINMIQHIKKHLPETFVIAGN- 147 (326)
T ss_pred CCHHHHHHHHHhccccccEEEEEecCCHHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHHHHHhhCCCCeEEEEe-
Confidence 46666666666666666644333 455567788888855 999997777444443 4444443 35566631
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCceeecccCCCCCCCCcccccCceEEee------ecCCCCCCccCC--CchHHHHHHHH
Q psy17999 115 MLPSIEHVDNIYTTVKQYHSNLSILHCVSAYPTPYPTVKQYHSNLSILH------CVSAYPTPYHDI--NLNVIHTLRSR 186 (335)
Q Consensus 115 ~~~tl~Ei~~Av~~i~~g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llH------C~s~YP~~~~~~--nL~~i~~L~~~ 186 (335)
.+ |.++...+.+. |.. .+..+ |++.-.+..... .|.++..+++.
T Consensus 148 V~-t~e~a~~l~~a---Gad------------------------~i~vg~~~G~~~~t~~~~g~~~~~w~l~ai~~~~~~ 199 (326)
T PRK05458 148 VG-TPEAVRELENA---GAD------------------------ATKVGIGPGKVCITKIKTGFGTGGWQLAALRWCAKA 199 (326)
T ss_pred cC-CHHHHHHHHHc---CcC------------------------EEEECCCCCcccccccccCCCCCccHHHHHHHHHHH
Confidence 33 78887776552 432 22111 555433333333 56678889887
Q ss_pred CCCCCeecCCCCCChHHHHHHHHcCCc--EEEeccC
Q psy17999 187 YPDIPIGYSGHENGVHVCYAAVAMGAQ--IIEKHFT 220 (335)
Q Consensus 187 fp~~pVG~SdHt~g~~~~~aAvalGA~--vIEkH~t 220 (335)
. ++||.-++--....-..-|.++||+ ++=..|+
T Consensus 200 ~-~ipVIAdGGI~~~~Di~KaLa~GA~aV~vG~~~~ 234 (326)
T PRK05458 200 A-RKPIIADGGIRTHGDIAKSIRFGATMVMIGSLFA 234 (326)
T ss_pred c-CCCEEEeCCCCCHHHHHHHHHhCCCEEEechhhc
Confidence 7 8998655544444444568889998 5555555
No 149
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=91.18 E-value=1.6 Score=44.74 Aligned_cols=80 Identities=14% Similarity=0.156 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHc-CCceEe-ccCChhhHHHHHhCCCCEEEEc--CC--CCC---------CHHHHHHH----HhcCCc
Q psy17999 48 QEEYVMLQQCADQV-DIMFTA-SAMDQVSFDFLLSANVPFIKIG--SG--DSN---------NIPLIKYA----ASKQKP 108 (335)
Q Consensus 48 ~e~~~~L~~~~~~~-Gi~f~s-tpfd~~svd~l~~l~v~~~KIa--S~--d~~---------n~~LL~~~----a~~gkP 108 (335)
...+..+++..+++ ++.+++ ++.+.+.+..+.+.|+|++||+ ++ ..+ .+.++..+ .+.+.|
T Consensus 250 ~~~~~~i~~i~~~~~~~~vi~G~v~t~~~a~~l~~aGad~i~vg~g~G~~~~t~~~~~~g~p~~~~i~~~~~~~~~~~vp 329 (450)
T TIGR01302 250 IYVIDSIKEIKKTYPDLDIIAGNVATAEQAKALIDAGADGLRVGIGPGSICTTRIVAGVGVPQITAVYDVAEYAAQSGIP 329 (450)
T ss_pred hHHHHHHHHHHHhCCCCCEEEEeCCCHHHHHHHHHhCCCEEEECCCCCcCCccceecCCCccHHHHHHHHHHHHhhcCCe
Confidence 34555666666664 788888 9999999999999999999976 32 111 22344333 346899
Q ss_pred EEEeCCCCCCHHHHHHHHHH
Q psy17999 109 LIISTGMLPSIEHVDNIYTT 128 (335)
Q Consensus 109 vilStG~~~tl~Ei~~Av~~ 128 (335)
||-+-|.. +..+|.+|+..
T Consensus 330 viadGGi~-~~~di~kAla~ 348 (450)
T TIGR01302 330 VIADGGIR-YSGDIVKALAA 348 (450)
T ss_pred EEEeCCCC-CHHHHHHHHHc
Confidence 99999999 99999998764
No 150
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=91.12 E-value=12 Score=34.08 Aligned_cols=126 Identities=10% Similarity=0.078 Sum_probs=79.6
Q ss_pred HHHHHHcCCceEecc--CChhhHHHHHhCCCCEEEEcCCCCCC---HHHHHHHHhcCCcEEEeCCCCCCHHHHHHHHHHH
Q psy17999 55 QQCADQVDIMFTASA--MDQVSFDFLLSANVPFIKIGSGDSNN---IPLIKYAASKQKPLIISTGMLPSIEHVDNIYTTV 129 (335)
Q Consensus 55 ~~~~~~~Gi~f~stp--fd~~svd~l~~l~v~~~KIaS~d~~n---~~LL~~~a~~gkPvilStG~~~tl~Ei~~Av~~i 129 (335)
....+..+++++.-- .+...++.+.+.|++.+-++..++.. ..+++++...|.-+++... +.+|+..+.+.
T Consensus 65 ~~i~~~v~iPi~~~~~i~~~~~v~~~~~~Gad~v~l~~~~~~~~~~~~~~~~~~~~g~~~~v~v~---~~~e~~~~~~~- 140 (217)
T cd00331 65 RAVREAVSLPVLRKDFIIDPYQIYEARAAGADAVLLIVAALDDEQLKELYELARELGMEVLVEVH---DEEELERALAL- 140 (217)
T ss_pred HHHHHhcCCCEEECCeecCHHHHHHHHHcCCCEEEEeeccCCHHHHHHHHHHHHHcCCeEEEEEC---CHHHHHHHHHc-
Confidence 333334477776433 44557899999999999999888875 3444555556777776663 78887776542
Q ss_pred HhcCCCCceeecccCCCCCCCCcccccCceEEeeecCCCCCCccCCCchHHHHHHHHCC-CCCeecCCCCCChHHHHHHH
Q psy17999 130 KQYHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYPTPYHDINLNVIHTLRSRYP-DIPIGYSGHENGVHVCYAAV 208 (335)
Q Consensus 130 ~~g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~s~YP~~~~~~nL~~i~~L~~~fp-~~pVG~SdHt~g~~~~~aAv 208 (335)
+. +++..+ +...+ ....|+..+..+++.+| ++||.-++--....-...+.
T Consensus 141 --g~------------------------~~i~~t--~~~~~-~~~~~~~~~~~l~~~~~~~~pvia~gGI~s~edi~~~~ 191 (217)
T cd00331 141 --GA------------------------KIIGIN--NRDLK-TFEVDLNTTERLAPLIPKDVILVSESGISTPEDVKRLA 191 (217)
T ss_pred --CC------------------------CEEEEe--CCCcc-ccCcCHHHHHHHHHhCCCCCEEEEEcCCCCHHHHHHHH
Confidence 22 333333 22222 23467788899988763 67886554444445555667
Q ss_pred HcCCc
Q psy17999 209 AMGAQ 213 (335)
Q Consensus 209 alGA~ 213 (335)
.+||+
T Consensus 192 ~~Ga~ 196 (217)
T cd00331 192 EAGAD 196 (217)
T ss_pred HcCCC
Confidence 88988
No 151
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=90.96 E-value=12 Score=34.96 Aligned_cols=138 Identities=9% Similarity=0.103 Sum_probs=83.8
Q ss_pred CHHHHHHHHHHHHHcCCceEeccCC--hhh----HHHHHhCCCCEEEE--------------cCCCCCCHHHHHH----H
Q psy17999 47 SQEEYVMLQQCADQVDIMFTASAMD--QVS----FDFLLSANVPFIKI--------------GSGDSNNIPLIKY----A 102 (335)
Q Consensus 47 ~~e~~~~L~~~~~~~Gi~f~stpfd--~~s----vd~l~~l~v~~~KI--------------aS~d~~n~~LL~~----~ 102 (335)
+.+++.......++.+..++...+. ++. +..+++. .+.|-| |+.-+.|.+++.+ +
T Consensus 57 ~~~~~~~~~~~~~~~~~p~~vqi~g~~~~~~~~aa~~~~~~-~~~ielN~gCP~~~v~~~g~G~~Ll~~p~~l~eiv~av 135 (233)
T cd02911 57 PLEFIEGEIKALKDSNVLVGVNVRSSSLEPLLNAAALVAKN-AAILEINAHCRQPEMVEAGAGEALLKDPERLSEFIKAL 135 (233)
T ss_pred hHHHHHHHHHHhhccCCeEEEEecCCCHHHHHHHHHHHhhc-CCEEEEECCCCcHHHhcCCcchHHcCCHHHHHHHHHHH
Confidence 4455555555566667777777755 333 2233332 344443 4445667766544 4
Q ss_pred HhcCCcEEEeCCCCCCHHHHHHHHHHHHhcCCCCceeecccCCCCCCCCcccccCceEEeeecCCCCCCccCCCchHHHH
Q psy17999 103 ASKQKPLIISTGMLPSIEHVDNIYTTVKQYHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYPTPYHDINLNVIHT 182 (335)
Q Consensus 103 a~~gkPvilStG~~~tl~Ei~~Av~~i~~g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~s~YP~~~~~~nL~~i~~ 182 (335)
.+.++||.++.....+ ++....++.+...+. + .+|-.+.||.. .+|+..|..
T Consensus 136 r~~~~pVsvKir~g~~-~~~~~la~~l~~aG~-----------------------d--~ihv~~~~~g~--~ad~~~I~~ 187 (233)
T cd02911 136 KETGVPVSVKIRAGVD-VDDEELARLIEKAGA-----------------------D--IIHVDAMDPGN--HADLKKIRD 187 (233)
T ss_pred HhcCCCEEEEEcCCcC-cCHHHHHHHHHHhCC-----------------------C--EEEECcCCCCC--CCcHHHHHH
Confidence 4568999998775535 555555566654222 3 46777777752 477888877
Q ss_pred HHHHCCCCCeecCCCCCChHHHHHHHHcCCcEEE
Q psy17999 183 LRSRYPDIPIGYSGHENGVHVCYAAVAMGAQIIE 216 (335)
Q Consensus 183 L~~~fp~~pVG~SdHt~g~~~~~aAvalGA~vIE 216 (335)
++ .++||.-.+=-....-+...+..||+.+-
T Consensus 188 i~---~~ipVIgnGgI~s~eda~~~l~~GaD~Vm 218 (233)
T cd02911 188 IS---TELFIIGNNSVTTIESAKEMFSYGADMVS 218 (233)
T ss_pred hc---CCCEEEEECCcCCHHHHHHHHHcCCCEEE
Confidence 76 37998555544455666666778999665
No 152
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=90.95 E-value=14 Score=35.63 Aligned_cols=150 Identities=14% Similarity=0.170 Sum_probs=76.4
Q ss_pred CCceEeccCCh---hh----HHHHHhCCCCEEEE--cC-----------CCCCCHHHHHHHHh-----cCCcEEEeCCCC
Q psy17999 62 DIMFTASAMDQ---VS----FDFLLSANVPFIKI--GS-----------GDSNNIPLIKYAAS-----KQKPLIISTGML 116 (335)
Q Consensus 62 Gi~f~stpfd~---~s----vd~l~~l~v~~~KI--aS-----------~d~~n~~LL~~~a~-----~gkPvilStG~~ 116 (335)
+..++.+.+-. +. ++.+++.++++|-| +. .-+.+..++.++-+ +++||+++..
T Consensus 99 ~~p~i~si~G~~~~~~~~~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~Pv~vKl~-- 176 (299)
T cd02940 99 DKILIASIMCEYNKEDWTELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVREAVKIPVIAKLT-- 176 (299)
T ss_pred CCeEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHHhcCCCeEEECC--
Confidence 57778877543 22 34555567888876 22 22355666655432 4799999965
Q ss_pred CCHHHHHHHHHHHHh-cCCCCceeecccCCCCCCCCcccccCceEEeeec---CCCCCCc-cCCCchHHHHHHHHCC-CC
Q psy17999 117 PSIEHVDNIYTTVKQ-YHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCV---SAYPTPY-HDINLNVIHTLRSRYP-DI 190 (335)
Q Consensus 117 ~tl~Ei~~Av~~i~~-g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~---s~YP~~~-~~~nL~~i~~L~~~fp-~~ 190 (335)
++..++.+.++.+.+ |-. -|.+.-+......-+++.. .....+|-. ..|=-+. ..+.|+.|..+++..+ ++
T Consensus 177 ~~~~~~~~~a~~~~~~Gad--gi~~~Nt~~~~~~id~~~~-~~~~~~~~~~~~gg~sG~a~~p~~l~~v~~~~~~~~~~i 253 (299)
T cd02940 177 PNITDIREIARAAKEGGAD--GVSAINTVNSLMGVDLDGT-PPAPGVEGKTTYGGYSGPAVKPIALRAVSQIARAPEPGL 253 (299)
T ss_pred CCchhHHHHHHHHHHcCCC--EEEEecccccccccccccC-CccccccCCCCcCcccCCCcchHHHHHHHHHHHhcCCCC
Confidence 355577777776666 533 1221111111000000000 001113321 1221111 2345889999999883 68
Q ss_pred CeecCCCCCChHHHHHHHHcCCcEEE
Q psy17999 191 PIGYSGHENGVHVCYAAVAMGAQIIE 216 (335)
Q Consensus 191 pVG~SdHt~g~~~~~aAvalGA~vIE 216 (335)
||.-++=-....-+...+..||+.+-
T Consensus 254 pIig~GGI~~~~da~~~l~aGA~~V~ 279 (299)
T cd02940 254 PISGIGGIESWEDAAEFLLLGASVVQ 279 (299)
T ss_pred cEEEECCCCCHHHHHHHHHcCCChhe
Confidence 88333322224444556679998655
No 153
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=90.89 E-value=1.1 Score=41.24 Aligned_cols=83 Identities=17% Similarity=0.138 Sum_probs=63.7
Q ss_pred CCHHHHHHHHHHHHHcCCceEeccCChhhHHHHHhCCCCEEEEcCCCCCC-HHHHHHHHhc--CCcEEEeCCCCCCHHHH
Q psy17999 46 FSQEEYVMLQQCADQVDIMFTASAMDQVSFDFLLSANVPFIKIGSGDSNN-IPLIKYAASK--QKPLIISTGMLPSIEHV 122 (335)
Q Consensus 46 l~~e~~~~L~~~~~~~Gi~f~stpfd~~svd~l~~l~v~~~KIaS~d~~n-~~LL~~~a~~--gkPvilStG~~~tl~Ei 122 (335)
+|.-.-.++.++|+++|+.++--++++..+..+.++|.+++|+=-.+... ..+++.+..- +.|+ +-||+- +++
T Consensus 85 vSP~~~~~v~~~~~~~~i~~iPG~~TptEi~~A~~~G~~~vK~FPA~~~GG~~~ik~l~~p~p~~~~-~ptGGV-~~~-- 160 (196)
T PF01081_consen 85 VSPGFDPEVIEYAREYGIPYIPGVMTPTEIMQALEAGADIVKLFPAGALGGPSYIKALRGPFPDLPF-MPTGGV-NPD-- 160 (196)
T ss_dssp EESS--HHHHHHHHHHTSEEEEEESSHHHHHHHHHTT-SEEEETTTTTTTHHHHHHHHHTTTTT-EE-EEBSS---TT--
T ss_pred ECCCCCHHHHHHHHHcCCcccCCcCCHHHHHHHHHCCCCEEEEecchhcCcHHHHHHHhccCCCCeE-EEcCCC-CHH--
Confidence 45556788999999999999999999999999999999999999999988 9999999873 4555 467765 443
Q ss_pred HHHHHHHHhcC
Q psy17999 123 DNIYTTVKQYH 133 (335)
Q Consensus 123 ~~Av~~i~~g~ 133 (335)
++-++++.|+
T Consensus 161 -N~~~~l~ag~ 170 (196)
T PF01081_consen 161 -NLAEYLKAGA 170 (196)
T ss_dssp -THHHHHTSTT
T ss_pred -HHHHHHhCCC
Confidence 4556666553
No 154
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=90.88 E-value=14 Score=34.71 Aligned_cols=140 Identities=13% Similarity=0.063 Sum_probs=82.7
Q ss_pred cCCHHHHHHHHHHHHHcCCceEecc-C-ChhhH----HHHHhCCCCEEEE--------------cCCCCCCHHHHHHHHh
Q psy17999 45 EFSQEEYVMLQQCADQVDIMFTASA-M-DQVSF----DFLLSANVPFIKI--------------GSGDSNNIPLIKYAAS 104 (335)
Q Consensus 45 el~~e~~~~L~~~~~~~Gi~f~stp-f-d~~sv----d~l~~l~v~~~KI--------------aS~d~~n~~LL~~~a~ 104 (335)
|++.+|+.+-...+++.+ .++.++ + |++.. ..+.+ ++++|-| |+.-+.|.+++.++-+
T Consensus 51 e~~~~~i~~e~~~~~~~~-~vivnv~~~~~ee~~~~a~~v~~-~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~ 128 (231)
T TIGR00736 51 EEFNSYIIEQIKKAESRA-LVSVNVRFVDLEEAYDVLLTIAE-HADIIEINAHCRQPEITEIGIGQELLKNKELLKEFLT 128 (231)
T ss_pred ccHHHHHHHHHHHHhhcC-CEEEEEecCCHHHHHHHHHHHhc-CCCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHHHH
Confidence 346677666666666555 555555 3 44443 33333 4777765 4446778888766544
Q ss_pred ----cCCcEEEeCCCCCCHHHHHHHHHHHHh-cCCCCceeecccCCCCCCCCcccccCceEEeeecCCCCCCccCCCchH
Q psy17999 105 ----KQKPLIISTGMLPSIEHVDNIYTTVKQ-YHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYPTPYHDINLNV 179 (335)
Q Consensus 105 ----~gkPvilStG~~~tl~Ei~~Av~~i~~-g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~s~YP~~~~~~nL~~ 179 (335)
.++||.++.-...+..+....++.+.+ |- +...+|| .||-. ..++|+.
T Consensus 129 av~~~~~PVsvKiR~~~~~~~~~~~a~~l~~aGa------------------------d~i~Vd~--~~~g~-~~a~~~~ 181 (231)
T TIGR00736 129 KMKELNKPIFVKIRGNCIPLDELIDALNLVDDGF------------------------DGIHVDA--MYPGK-PYADMDL 181 (231)
T ss_pred HHHcCCCcEEEEeCCCCCcchHHHHHHHHHHcCC------------------------CEEEEee--CCCCC-chhhHHH
Confidence 589999997654243344455555655 43 3334474 56632 2288999
Q ss_pred HHHHHHHCCCCCeecCCCCCChHHHHHHHHcCCc
Q psy17999 180 IHTLRSRYPDIPIGYSGHENGVHVCYAAVAMGAQ 213 (335)
Q Consensus 180 i~~L~~~fp~~pVG~SdHt~g~~~~~aAvalGA~ 213 (335)
|..+++.++++||.=++--....-+......||+
T Consensus 182 I~~i~~~~~~ipIIgNGgI~s~eda~e~l~~GAd 215 (231)
T TIGR00736 182 LKILSEEFNDKIIIGNNSIDDIESAKEMLKAGAD 215 (231)
T ss_pred HHHHHHhcCCCcEEEECCcCCHHHHHHHHHhCCC
Confidence 9999998845888433333333444444456887
No 155
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=90.86 E-value=1.8 Score=45.17 Aligned_cols=81 Identities=17% Similarity=0.242 Sum_probs=61.9
Q ss_pred CHHHHHHHHHHHHHc-CCceEe-ccCChhhHHHHHhCCCCEEEEc--CC--------------CCCCHHHHHHHHh-cCC
Q psy17999 47 SQEEYVMLQQCADQV-DIMFTA-SAMDQVSFDFLLSANVPFIKIG--SG--------------DSNNIPLIKYAAS-KQK 107 (335)
Q Consensus 47 ~~e~~~~L~~~~~~~-Gi~f~s-tpfd~~svd~l~~l~v~~~KIa--S~--------------d~~n~~LL~~~a~-~gk 107 (335)
+...|..+++..+++ ++.++. .+-+.+.+..+.+.|+|+++++ ++ .++.+.++.++++ .+.
T Consensus 273 ~~~~~~~i~~ik~~~p~~~vi~g~v~t~e~a~~a~~aGaD~i~vg~g~G~~~~t~~~~~~g~~~~~~i~~~~~~~~~~~v 352 (505)
T PLN02274 273 SIYQLEMIKYIKKTYPELDVIGGNVVTMYQAQNLIQAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVASIAAQHGV 352 (505)
T ss_pred cHHHHHHHHHHHHhCCCCcEEEecCCCHHHHHHHHHcCcCEEEECCCCCccccCccccccCCCcccHHHHHHHHHHhcCC
Confidence 445566666666666 688865 7999999999999999999996 22 2334555666665 489
Q ss_pred cEEEeCCCCCCHHHHHHHHHH
Q psy17999 108 PLIISTGMLPSIEHVDNIYTT 128 (335)
Q Consensus 108 PvilStG~~~tl~Ei~~Av~~ 128 (335)
|||..-|.. +..++.+|+..
T Consensus 353 pVIadGGI~-~~~di~kAla~ 372 (505)
T PLN02274 353 PVIADGGIS-NSGHIVKALTL 372 (505)
T ss_pred eEEEeCCCC-CHHHHHHHHHc
Confidence 999999999 99999998763
No 156
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=90.82 E-value=5 Score=38.57 Aligned_cols=82 Identities=17% Similarity=0.101 Sum_probs=55.6
Q ss_pred HHHHHHHHcCCceEeccCChhhHHHHHhCCCCEEEEcCC------------CCCCHHHHHHH---Hh-cCCc-EEEeCC-
Q psy17999 53 MLQQCADQVDIMFTASAMDQVSFDFLLSANVPFIKIGSG------------DSNNIPLIKYA---AS-KQKP-LIISTG- 114 (335)
Q Consensus 53 ~L~~~~~~~Gi~f~stpfd~~svd~l~~l~v~~~KIaS~------------d~~n~~LL~~~---a~-~gkP-vilStG- 114 (335)
.|++.-++-....+.++||..++..+++.|+|++-++++ .++--.++..+ ++ ++.| |+...+
T Consensus 6 ~lr~~~~~g~~i~~~tayD~~sArl~e~aG~d~i~vGds~~~~~lG~~Dt~~vtl~em~~h~~~V~r~~~~p~vvaD~pf 85 (264)
T PRK00311 6 DLQKMKQEGEKIVMLTAYDYPFAKLFDEAGVDVILVGDSLGMVVLGYDSTLPVTLDDMIYHTKAVARGAPRALVVADMPF 85 (264)
T ss_pred HHHHHHhCCCCEEEEeCCCHHHHHHHHHcCCCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcCCCCcEEEeCCC
Confidence 344444555688899999999999999999999998844 22333444443 33 3555 777776
Q ss_pred CC--CCHHH-HHHHHHHHHh-cCC
Q psy17999 115 ML--PSIEH-VDNIYTTVKQ-YHS 134 (335)
Q Consensus 115 ~~--~tl~E-i~~Av~~i~~-g~~ 134 (335)
++ .+.++ +.++++.+++ |..
T Consensus 86 g~y~~~~~~av~~a~r~~~~aGa~ 109 (264)
T PRK00311 86 GSYQASPEQALRNAGRLMKEAGAH 109 (264)
T ss_pred CCccCCHHHHHHHHHHHHHHhCCe
Confidence 32 25566 7888888885 543
No 157
>PRK15447 putative protease; Provisional
Probab=90.82 E-value=2.9 Score=40.60 Aligned_cols=102 Identities=7% Similarity=0.124 Sum_probs=70.3
Q ss_pred cCCHHHHHHHHHHHHHcCCceEe-ccC---ChhhHH---HHHhCCCCEEEEcCCCCCCHHHHHHHHhcCCcEEEeCCCCC
Q psy17999 45 EFSQEEYVMLQQCADQVDIMFTA-SAM---DQVSFD---FLLSANVPFIKIGSGDSNNIPLIKYAASKQKPLIISTGMLP 117 (335)
Q Consensus 45 el~~e~~~~L~~~~~~~Gi~f~s-tpf---d~~svd---~l~~l~v~~~KIaS~d~~n~~LL~~~a~~gkPvilStG~~~ 117 (335)
.|+.+++.+..+++++.|..+.. +|- .....+ .+.+.+++.+. +.|+..+..+.+.+.|++.++.+.
T Consensus 44 ~f~~~~l~e~v~~~~~~gkkvyva~p~i~~~~~e~~~l~~~l~~~~~~v~-----v~d~g~l~~~~e~~~~l~~d~~ln- 117 (301)
T PRK15447 44 ELKVGDWLELAERLAAAGKEVVLSTLALVEAPSELKELRRLVENGEFLVE-----ANDLGAVRLLAERGLPFVAGPALN- 117 (301)
T ss_pred CCCHHHHHHHHHHHHHcCCEEEEEecccccCHHHHHHHHHHHhcCCCEEE-----EeCHHHHHHHHhcCCCEEEecccc-
Confidence 68999999999999999988765 332 233333 33344555544 467887777777799999999987
Q ss_pred CHHHHHHHHHHHHh-cCCCCceeecccCCCCCCCCcccccCceEEeeecCCCCCCccCCCchHHHHHHHHC
Q psy17999 118 SIEHVDNIYTTVKQ-YHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYPTPYHDINLNVIHTLRSRY 187 (335)
Q Consensus 118 tl~Ei~~Av~~i~~-g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~s~YP~~~~~~nL~~i~~L~~~f 187 (335)
..+ ..+++++.+ |-. .+ +..-++|+..|..|.+..
T Consensus 118 i~N--~~a~~~l~~~G~~-----------------------rv----------~ls~ELsl~eI~~i~~~~ 153 (301)
T PRK15447 118 CYN--AATLALLARLGAT-----------------------RW----------CMPVELSRDWLANLLAQC 153 (301)
T ss_pred cCC--HHHHHHHHHcCCc-----------------------EE----------EECCcCCHHHHHHHHHhc
Confidence 444 345666765 433 22 123479999999998764
No 158
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=90.80 E-value=6.7 Score=38.04 Aligned_cols=168 Identities=18% Similarity=0.093 Sum_probs=98.2
Q ss_pred HHHHHHcCCceEeccCChhhHHHHHhC---------CCCEEEEcCC---------C---CCCHHHHHHHH----hcCCcE
Q psy17999 55 QQCADQVDIMFTASAMDQVSFDFLLSA---------NVPFIKIGSG---------D---SNNIPLIKYAA----SKQKPL 109 (335)
Q Consensus 55 ~~~~~~~Gi~f~stpfd~~svd~l~~l---------~v~~~KIaS~---------d---~~n~~LL~~~a----~~gkPv 109 (335)
++.-++.++.++-.+||.-|+..+++. |.+++.+.|. | ++--+++..+. .+..||
T Consensus 2 r~~l~~~~~l~~p~~~D~~SA~~~e~~~~~~~~~~~Gf~ai~~ss~~~a~s~G~pD~~~~~~~e~~~~~~~I~~a~~~Pv 81 (285)
T TIGR02320 2 RQLLHSKPLERLMEAHNGLSALIAEEARVEVGGESLGFDGIWSSSLTDSTSRGVPDIEEASWTQRLDVVEFMFDVTTKPI 81 (285)
T ss_pred hHHhcCCCCEEEecCcCHHHHHHHHHhhhcccCcCCCcCEEEechHHHHHHCCCCCcCcCCHHHHHHHHHHHHhhcCCCE
Confidence 455577889999999999999999999 9999998875 3 33334444432 258898
Q ss_pred EEe--CCCCCCHHHHHHHHHHHHh-cCCCCceeecccCCCCCCCCcccccCceEEeeecCCCCCCccCCCchHHHHHHHH
Q psy17999 110 IIS--TGMLPSIEHVDNIYTTVKQ-YHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYPTPYHDINLNVIHTLRSR 186 (335)
Q Consensus 110 ilS--tG~~~tl~Ei~~Av~~i~~-g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~s~YP~~~~~~nL~~i~~L~~~ 186 (335)
++. +| . +...+.+.|+.+.+ |-. -+..|-.+... +...+--...++.-..+--...|...++.
T Consensus 82 ~~D~d~G-g-~~~~v~r~V~~l~~aGva---Gi~iEDq~~pk---------~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a 147 (285)
T TIGR02320 82 ILDGDTG-G-NFEHFRRLVRKLERRGVS---AVCIEDKLGLK---------KNSLFGNDVAQPQASVEEFCGKIRAGKDA 147 (285)
T ss_pred EEecCCC-C-CHHHHHHHHHHHHHcCCe---EEEEeccCCCc---------cccccCCCCcccccCHHHHHHHHHHHHHh
Confidence 876 88 6 99999999998877 643 11121111000 00000000011211112234455555443
Q ss_pred --CCCCCee------cCCCCCC--hHHHHHHHHcCCcEEEeccCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q psy17999 187 --YPDIPIG------YSGHENG--VHVCYAAVAMGAQIIEKHFTLDKSWKGSDHASSLTPPELKALVTGIRD 248 (335)
Q Consensus 187 --fp~~pVG------~SdHt~g--~~~~~aAvalGA~vIEkH~tld~~~~G~Dh~~Sl~p~el~~lv~~ir~ 248 (335)
-++++|. ...|... +.-+.++..+||++|=-+. ...+++++.++++.++.
T Consensus 148 ~~~~~~~IiARTDa~~~~~~~~eAi~Ra~ay~eAGAD~ifv~~------------~~~~~~ei~~~~~~~~~ 207 (285)
T TIGR02320 148 QTTEDFMIIARVESLILGKGMEDALKRAEAYAEAGADGIMIHS------------RKKDPDEILEFARRFRN 207 (285)
T ss_pred ccCCCeEEEEecccccccCCHHHHHHHHHHHHHcCCCEEEecC------------CCCCHHHHHHHHHHhhh
Confidence 1245552 1233322 3336788999999543221 11357899999998863
No 159
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=90.78 E-value=5.6 Score=41.67 Aligned_cols=139 Identities=17% Similarity=0.213 Sum_probs=86.9
Q ss_pred HHHHHhCCCCEEEEcCCCCCCHHH--HHHHHhcC----------CcEEEeCCCCCCHHHHHHHHHHHHh-cCCCCceeec
Q psy17999 75 FDFLLSANVPFIKIGSGDSNNIPL--IKYAASKQ----------KPLIISTGMLPSIEHVDNIYTTVKQ-YHSNLSILHC 141 (335)
Q Consensus 75 vd~l~~l~v~~~KIaS~d~~n~~L--L~~~a~~g----------kPvilStG~~~tl~Ei~~Av~~i~~-g~~~~~~~~c 141 (335)
++.|.++||+.|-+++.-...... ++++++.. .|.|..-+.+ ..++|+.|++.+.. +..
T Consensus 112 a~~L~~~GVd~IEvG~Pa~s~~e~e~i~~i~~~~~~~~~~~~~l~~~i~a~~R~-~~~dId~a~~a~~~a~~~------- 183 (503)
T PLN03228 112 ARQLAKLRVDIMEVGFPGSSEEEFEAVKTIAKTVGNEVDEETGYVPVICGIARC-KKRDIEAAWEALKYAKRP------- 183 (503)
T ss_pred HHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHhcccccccccccceEEeeeccc-CHhhHHHHHHhhcccCCC-------
Confidence 567788889999998876665444 78887652 3788888888 88999999987654 322
Q ss_pred ccCCCCCCCCcccccCceEEeeecCCC------CCCc-cCCC--chHHHHHHHHCCCCC-eecCC-----CCCC--hHHH
Q psy17999 142 VSAYPTPYPTVKQYHSNLSILHCVSAY------PTPY-HDIN--LNVIHTLRSRYPDIP-IGYSG-----HENG--VHVC 204 (335)
Q Consensus 142 ~~g~~~~~~~~~~~~~~l~llHC~s~Y------P~~~-~~~n--L~~i~~L~~~fp~~p-VG~Sd-----Ht~g--~~~~ 204 (335)
.+.+.=++|.+ -... +.++ ...+...|+. +.. |.|+- +... ..+.
T Consensus 184 ----------------~V~i~i~~Sd~h~~~kl~~s~ee~l~~~~~~V~~Ak~~--G~~~v~f~~EDa~Rtd~efl~~~~ 245 (503)
T PLN03228 184 ----------------RILAFTSTSDIHMKYKLKKTKEEVIEMAVSSIRYAKSL--GFHDIQFGCEDGGRSDKEFLCKIL 245 (503)
T ss_pred ----------------EEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHc--CCceEEeccccccccCHHHHHHHH
Confidence 33333233311 1111 1111 2344455554 343 44432 1122 3445
Q ss_pred HHHHHcCCcEEEeccCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q psy17999 205 YAAVAMGAQIIEKHFTLDKSWKGSDHASSLTPPELKALVTGIRDI 249 (335)
Q Consensus 205 ~aAvalGA~vIEkH~tld~~~~G~Dh~~Sl~p~el~~lv~~ir~~ 249 (335)
.+|..+||+.|- + +|-.-.++|.++.++|+.+++.
T Consensus 246 ~~a~~~Gad~I~----l------~DTvG~~tP~~v~~lV~~l~~~ 280 (503)
T PLN03228 246 GEAIKAGATSVG----I------ADTVGINMPHEFGELVTYVKAN 280 (503)
T ss_pred HHHHhcCCCEEE----E------ecCCCCCCHHHHHHHHHHHHHH
Confidence 678889999753 2 2788889999999999999863
No 160
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=90.77 E-value=2.2 Score=39.00 Aligned_cols=76 Identities=8% Similarity=0.040 Sum_probs=58.7
Q ss_pred HHHHHHHHHHcCCceEeccCChhhHHHHHhCCCCEEEEcCC------CC---CCHHHHHHHHh-cCCcEEEeCCCCCCHH
Q psy17999 51 YVMLQQCADQVDIMFTASAMDQVSFDFLLSANVPFIKIGSG------DS---NNIPLIKYAAS-KQKPLIISTGMLPSIE 120 (335)
Q Consensus 51 ~~~L~~~~~~~Gi~f~stpfd~~svd~l~~l~v~~~KIaS~------d~---~n~~LL~~~a~-~gkPvilStG~~~tl~ 120 (335)
-..+.+.+++.++.++..+.+.+.+..+.+.+++++.+.+. .. ..+.+++++.+ .++||++.-|.+ +.+
T Consensus 91 ~~~~~~~~~~~~i~~i~~v~~~~~~~~~~~~gad~i~~~~~~~~G~~~~~~~~~~~~i~~i~~~~~~Pvi~~GGI~-~~~ 169 (236)
T cd04730 91 PAEVVERLKAAGIKVIPTVTSVEEARKAEAAGADALVAQGAEAGGHRGTFDIGTFALVPEVRDAVDIPVIAAGGIA-DGR 169 (236)
T ss_pred CHHHHHHHHHcCCEEEEeCCCHHHHHHHHHcCCCEEEEeCcCCCCCCCccccCHHHHHHHHHHHhCCCEEEECCCC-CHH
Confidence 35567777888999999998888888888899999998432 11 23567887765 489999999999 888
Q ss_pred HHHHHHH
Q psy17999 121 HVDNIYT 127 (335)
Q Consensus 121 Ei~~Av~ 127 (335)
++.++++
T Consensus 170 ~v~~~l~ 176 (236)
T cd04730 170 GIAAALA 176 (236)
T ss_pred HHHHHHH
Confidence 8887764
No 161
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=90.74 E-value=9.5 Score=38.38 Aligned_cols=80 Identities=11% Similarity=0.113 Sum_probs=51.7
Q ss_pred CCHHHHHHHHHHHHHcCCceEe--cc-CChhhHHHHHhCCCCEEEEc---------CCCCCCHHHHHHHHhcCCcEEEeC
Q psy17999 46 FSQEEYVMLQQCADQVDIMFTA--SA-MDQVSFDFLLSANVPFIKIG---------SGDSNNIPLIKYAASKQKPLIIST 113 (335)
Q Consensus 46 l~~e~~~~L~~~~~~~Gi~f~s--tp-fd~~svd~l~~l~v~~~KIa---------S~d~~n~~LL~~~a~~gkPvilSt 113 (335)
+..+-..++.+..++.++.+-. +| ...+-++.+.+.|++++-|. |+.-....+.+.+.+.+.|||. -
T Consensus 116 ~~p~l~~~ii~~vr~a~VtvkiRl~~~~~~e~a~~l~eAGad~I~ihgrt~~q~~~sg~~~p~~l~~~i~~~~IPVI~-G 194 (369)
T TIGR01304 116 LKPELLGERIAEVRDSGVITAVRVSPQNAREIAPIVVKAGADLLVIQGTLVSAEHVSTSGEPLNLKEFIGELDVPVIA-G 194 (369)
T ss_pred cChHHHHHHHHHHHhcceEEEEecCCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCCCCHHHHHHHHHHCCCCEEE-e
Confidence 3445555566666666654443 33 23455688889999999986 3344444566667778999997 3
Q ss_pred CCCCCHHHHHHHHH
Q psy17999 114 GMLPSIEHVDNIYT 127 (335)
Q Consensus 114 G~~~tl~Ei~~Av~ 127 (335)
|.. |.++..++++
T Consensus 195 ~V~-t~e~A~~~~~ 207 (369)
T TIGR01304 195 GVN-DYTTALHLMR 207 (369)
T ss_pred CCC-CHHHHHHHHH
Confidence 455 8877776654
No 162
>PLN02321 2-isopropylmalate synthase
Probab=90.61 E-value=3.6 Score=44.19 Aligned_cols=138 Identities=16% Similarity=0.247 Sum_probs=83.8
Q ss_pred HHHHHhCCCCEEEEcCCC--CCCHHHHHHHHhcCC---------cEEEeCCCCCCHHHHHHHHHHHHh-cCCCCceeecc
Q psy17999 75 FDFLLSANVPFIKIGSGD--SNNIPLIKYAASKQK---------PLIISTGMLPSIEHVDNIYTTVKQ-YHSNLSILHCV 142 (335)
Q Consensus 75 vd~l~~l~v~~~KIaS~d--~~n~~LL~~~a~~gk---------PvilStG~~~tl~Ei~~Av~~i~~-g~~~~~~~~c~ 142 (335)
++.|.++||+.|-+++.- -.++..++++++..+ |+|+.-+.+ ..++|+.|++.+.. ...
T Consensus 114 a~~L~~lGVd~IEvGfP~~Sp~D~e~vr~i~~~~~~~v~~~~~v~~i~a~~ra-~~~dId~A~~al~~a~~~-------- 184 (632)
T PLN02321 114 ARQLAKLGVDIIEAGFPIASPDDLEAVKTIAKEVGNEVDEDGYVPVICGLSRC-NKKDIDAAWEAVKHAKRP-------- 184 (632)
T ss_pred HHHHHHcCCCEEEEeCcCCCccHHHHHHHHHHhcccCCCccccceeeeeehhc-cHHhHHHHHHHhcCCCCC--------
Confidence 355666677777776632 256677888876522 788889988 99999999987653 222
Q ss_pred cCCCCCCCCcccccCceEEeeecCCC------CCCc-cCCC--chHHHHHHHHCCCC-CeecCCCCC-----C--hHHHH
Q psy17999 143 SAYPTPYPTVKQYHSNLSILHCVSAY------PTPY-HDIN--LNVIHTLRSRYPDI-PIGYSGHEN-----G--VHVCY 205 (335)
Q Consensus 143 ~g~~~~~~~~~~~~~~l~llHC~s~Y------P~~~-~~~n--L~~i~~L~~~fp~~-pVG~SdHt~-----g--~~~~~ 205 (335)
.+.+.-.+|.. -... +.++ ...+...|+ . +. .|.|+-=.. + ..++.
T Consensus 185 ---------------~I~i~~stSd~h~~~~l~~t~ee~l~~~~~~V~~Ak~-~-G~~~v~fs~EDa~rtd~d~l~~~~~ 247 (632)
T PLN02321 185 ---------------RIHTFIATSEIHMEHKLRKTPDEVVEIARDMVKYARS-L-GCEDVEFSPEDAGRSDPEFLYRILG 247 (632)
T ss_pred ---------------EEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH-c-CCceEEEecccCCCCCHHHHHHHHH
Confidence 34343333321 2222 2122 122333344 3 34 466653211 1 44677
Q ss_pred HHHHcCCcEEEeccCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q psy17999 206 AAVAMGAQIIEKHFTLDKSWKGSDHASSLTPPELKALVTGIRD 248 (335)
Q Consensus 206 aAvalGA~vIEkH~tld~~~~G~Dh~~Sl~p~el~~lv~~ir~ 248 (335)
+++.+||+.|= + +|=.-.++|.++.++++.+++
T Consensus 248 ~a~~aGa~~I~----L------~DTvG~~~P~~v~~li~~l~~ 280 (632)
T PLN02321 248 EVIKAGATTLN----I------PDTVGYTLPSEFGQLIADIKA 280 (632)
T ss_pred HHHHcCCCEEE----e------cccccCCCHHHHHHHHHHHHH
Confidence 88899998653 2 266667899999999999975
No 163
>PLN02623 pyruvate kinase
Probab=90.58 E-value=1.8 Score=45.88 Aligned_cols=87 Identities=18% Similarity=0.159 Sum_probs=65.1
Q ss_pred CHHHHHHHHHHHHHcC--CceEeccCChhhHHHHHh--CCCCEEEEcCCCCCC-----------HHHHHHHHhcCCcEEE
Q psy17999 47 SQEEYVMLQQCADQVD--IMFTASAMDQVSFDFLLS--ANVPFIKIGSGDSNN-----------IPLIKYAASKQKPLII 111 (335)
Q Consensus 47 ~~e~~~~L~~~~~~~G--i~f~stpfd~~svd~l~~--l~v~~~KIaS~d~~n-----------~~LL~~~a~~gkPvil 111 (335)
+.++..++.+|.++.| +.+++-.-+.++++-+++ .++|.+-||-+||.- -.+++.+.+.|||+++
T Consensus 302 ~a~DV~~~r~~l~~~~~~~~iiakIEt~eaVeNldeIl~g~DgImIgrgDLgvelg~~~v~~~qk~Ii~~~~~~gKpviv 381 (581)
T PLN02623 302 DAQVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPIEEVPLLQEEIIRRCRSMGKPVIV 381 (581)
T ss_pred CHHHHHHHHHHHHHcCCcceEEEEECCHHHHHhHHHHHHhCCEEEECcchhhhhcCcHHHHHHHHHHHHHHHHhCCCEEE
Confidence 5578888888888765 567777777777765544 279999999998753 2344446667999998
Q ss_pred eC---------CCCCCHHHHHHHHHHHHhcCC
Q psy17999 112 ST---------GMLPSIEHVDNIYTTVKQYHS 134 (335)
Q Consensus 112 St---------G~~~tl~Ei~~Av~~i~~g~~ 134 (335)
.| +.. |-+|+..+.+.+..|-.
T Consensus 382 aTQMLESMi~~~~P-TRAEv~Dva~av~dG~d 412 (581)
T PLN02623 382 ATNMLESMIVHPTP-TRAEVSDIAIAVREGAD 412 (581)
T ss_pred ECchhhhcccCCCC-CchhHHHHHHHHHcCCC
Confidence 88 544 99999999998887643
No 164
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=90.40 E-value=17 Score=34.79 Aligned_cols=166 Identities=15% Similarity=0.140 Sum_probs=89.1
Q ss_pred CCCCcEEEeecccccccccccccCCCCCCCCCCcc-cHHHHHHhhc--CCHHH-HHHHHHHHHHcCCc-eEeccCCh---
Q psy17999 1 ECGADCVKFQKSCLSTKFTQSALDRPYLSPHAWAN-TYGQHKQHLE--FSQEE-YVMLQQCADQVDIM-FTASAMDQ--- 72 (335)
Q Consensus 1 ~aGaDaVKFQ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~e--l~~e~-~~~L~~~~~~~Gi~-f~stpfd~--- 72 (335)
++|||++-.+. ||..|...|. .+....+.++ ++.++ +..+.+..++..++ ++-|=+.+
T Consensus 40 ~~Gad~iElGi--------------PfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~~~~p~vlm~Y~N~i~~ 105 (263)
T CHL00200 40 KKGADIIELGI--------------PYSDPLADGPIIQEASNRALKQGINLNKILSILSEVNGEIKAPIVIFTYYNPVLH 105 (263)
T ss_pred HCCCCEEEECC--------------CCCCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEEEEecccHHHH
Confidence 46888888886 3444433332 2222223222 44444 55566655556666 33333332
Q ss_pred ----hhHHHHHhCCCCEEEEcCCCCCCH-HHHHHHHhcCCcEEEe-CCCCCCHHHHHHHHHHHHhcCCCCceeecccCCC
Q psy17999 73 ----VSFDFLLSANVPFIKIGSGDSNNI-PLIKYAASKQKPLIIS-TGMLPSIEHVDNIYTTVKQYHSNLSILHCVSAYP 146 (335)
Q Consensus 73 ----~svd~l~~l~v~~~KIaS~d~~n~-~LL~~~a~~gkPvilS-tG~~~tl~Ei~~Av~~i~~g~~~~~~~~c~~g~~ 146 (335)
+-++.+.+.|++.+-|+-=-..+. ++++.+.+.|...|+- +-.+ +.+.+...++.- .
T Consensus 106 ~G~e~F~~~~~~aGvdgviipDLP~ee~~~~~~~~~~~gi~~I~lv~PtT-~~eri~~i~~~a----~------------ 168 (263)
T CHL00200 106 YGINKFIKKISQAGVKGLIIPDLPYEESDYLISVCNLYNIELILLIAPTS-SKSRIQKIARAA----P------------ 168 (263)
T ss_pred hCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEEECCCC-CHHHHHHHHHhC----C------------
Confidence 225666788999999886555444 5566677778755554 4444 566666554421 1
Q ss_pred CCCCCcccccCceEEeeecCCCCCCcc--CC--C-chHHHHHHHHCCCCCe--ecCCCCCChHHHHHHHHcCCc
Q psy17999 147 TPYPTVKQYHSNLSILHCVSAYPTPYH--DI--N-LNVIHTLRSRYPDIPI--GYSGHENGVHVCYAAVAMGAQ 213 (335)
Q Consensus 147 ~~~~~~~~~~~~l~llHC~s~YP~~~~--~~--n-L~~i~~L~~~fp~~pV--G~SdHt~g~~~~~aAvalGA~ 213 (335)
..+.|+|...+--. .+ + ...+..+|+.+ +.|| ||-=++ ..........||+
T Consensus 169 -------------gFIY~vS~~GvTG~~~~~~~~~~~~i~~ir~~t-~~Pi~vGFGI~~--~e~~~~~~~~GAD 226 (263)
T CHL00200 169 -------------GCIYLVSTTGVTGLKTELDKKLKKLIETIKKMT-NKPIILGFGIST--SEQIKQIKGWNIN 226 (263)
T ss_pred -------------CcEEEEcCCCCCCCCccccHHHHHHHHHHHHhc-CCCEEEECCcCC--HHHHHHHHhcCCC
Confidence 12345554443222 11 1 23466778877 8887 663222 3344446667776
No 165
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=90.40 E-value=2.3 Score=43.77 Aligned_cols=146 Identities=15% Similarity=0.203 Sum_probs=87.7
Q ss_pred CCHHHHHHHHHHHHH-cCCceE--ecc-----C-------ChhhHHHHHhCCCCEEEEcC--CCCCCHH-HHHHHHhcCC
Q psy17999 46 FSQEEYVMLQQCADQ-VDIMFT--ASA-----M-------DQVSFDFLLSANVPFIKIGS--GDSNNIP-LIKYAASKQK 107 (335)
Q Consensus 46 l~~e~~~~L~~~~~~-~Gi~f~--stp-----f-------d~~svd~l~~l~v~~~KIaS--~d~~n~~-LL~~~a~~gk 107 (335)
++++.|..|....+. .+..+. +-. | -...++...+.|++.+-|.- .++.|.. .++++-+.|+
T Consensus 58 ~~e~p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~pddvv~~~v~~A~~~Gvd~irif~~lnd~~n~~~~v~~ak~~G~ 137 (448)
T PRK12331 58 LNEDPWERLRKIRKAVKKTKLQMLLRGQNLLGYRNYADDVVESFVQKSVENGIDIIRIFDALNDVRNLETAVKATKKAGG 137 (448)
T ss_pred CCCCHHHHHHHHHHhCCCCEEEEEeccccccccccCchhhHHHHHHHHHHCCCCEEEEEEecCcHHHHHHHHHHHHHcCC
Confidence 455566666666555 344443 221 1 23456777788899877663 3444543 3444445677
Q ss_pred cEEE--eCCCC--CCHHHHHHHHHHHHh-cCCCCceeecccCCCCCCCCcccccCceEEeeecCCCCCCccCCCchHHHH
Q psy17999 108 PLII--STGML--PSIEHVDNIYTTVKQ-YHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYPTPYHDINLNVIHT 182 (335)
Q Consensus 108 Pvil--StG~~--~tl~Ei~~Av~~i~~-g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~s~YP~~~~~~nL~~i~~ 182 (335)
-+.+ +.-.+ -+++-+.+.++.+.+ |.. .|-+|+.. .+=+|..-.. .+..
T Consensus 138 ~v~~~i~~t~~p~~~~~~~~~~a~~l~~~Gad--~I~i~Dt~----------------------G~l~P~~v~~--lv~a 191 (448)
T PRK12331 138 HAQVAISYTTSPVHTIDYFVKLAKEMQEMGAD--SICIKDMA----------------------GILTPYVAYE--LVKR 191 (448)
T ss_pred eEEEEEEeecCCCCCHHHHHHHHHHHHHcCCC--EEEEcCCC----------------------CCCCHHHHHH--HHHH
Confidence 6443 32111 267777777777766 644 44444442 2233333222 4788
Q ss_pred HHHHCCCCCeecCCCC-CC--hHHHHHHHHcCCcEEEec
Q psy17999 183 LRSRYPDIPIGYSGHE-NG--VHVCYAAVAMGAQIIEKH 218 (335)
Q Consensus 183 L~~~fp~~pVG~SdHt-~g--~~~~~aAvalGA~vIEkH 218 (335)
||+.+ ++||++=.|. .| ....++|+..||++|.-=
T Consensus 192 lk~~~-~~pi~~H~Hnt~GlA~AN~laAieaGad~vD~s 229 (448)
T PRK12331 192 IKEAV-TVPLEVHTHATSGIAEMTYLKAIEAGADIIDTA 229 (448)
T ss_pred HHHhc-CCeEEEEecCCCCcHHHHHHHHHHcCCCEEEee
Confidence 89999 6999998775 34 566789999999999843
No 166
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=90.38 E-value=3.6 Score=37.96 Aligned_cols=82 Identities=16% Similarity=0.112 Sum_probs=67.3
Q ss_pred CCHHHHHHHHHHHHHcCCceEeccCChhhHHHHHhCCCCEEEEcCCCCCC-HHHHHHHHhc--CCcEEEeCCCCCCHHHH
Q psy17999 46 FSQEEYVMLQQCADQVDIMFTASAMDQVSFDFLLSANVPFIKIGSGDSNN-IPLIKYAASK--QKPLIISTGMLPSIEHV 122 (335)
Q Consensus 46 l~~e~~~~L~~~~~~~Gi~f~stpfd~~svd~l~~l~v~~~KIaS~d~~n-~~LL~~~a~~--gkPvilStG~~~tl~Ei 122 (335)
+|.-.-.++.++|+++|+.++--++++..+-.+.++|.+++|+=-.+... ..+|+.+..- +.|++ -||+- +++
T Consensus 81 vSP~~~~~vi~~a~~~~i~~iPG~~TptEi~~A~~~Ga~~vK~FPa~~~GG~~yikal~~plp~~~l~-ptGGV-~~~-- 156 (201)
T PRK06015 81 VSPGTTQELLAAANDSDVPLLPGAATPSEVMALREEGYTVLKFFPAEQAGGAAFLKALSSPLAGTFFC-PTGGI-SLK-- 156 (201)
T ss_pred ECCCCCHHHHHHHHHcCCCEeCCCCCHHHHHHHHHCCCCEEEECCchhhCCHHHHHHHHhhCCCCcEE-ecCCC-CHH--
Confidence 56666788999999999999999999999999999999999999887774 9999998763 56666 77766 554
Q ss_pred HHHHHHHHhc
Q psy17999 123 DNIYTTVKQY 132 (335)
Q Consensus 123 ~~Av~~i~~g 132 (335)
++-++++.|
T Consensus 157 -n~~~~l~ag 165 (201)
T PRK06015 157 -NARDYLSLP 165 (201)
T ss_pred -HHHHHHhCC
Confidence 555677654
No 167
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=90.37 E-value=17 Score=34.59 Aligned_cols=173 Identities=14% Similarity=0.085 Sum_probs=92.9
Q ss_pred CCCCcEEEeecccccccccccccCCCCCCCCCCcc-cHHHHHHhh--cCCHHHHHH-HHHHHHH-cCCc-eEeccCCh--
Q psy17999 1 ECGADCVKFQKSCLSTKFTQSALDRPYLSPHAWAN-TYGQHKQHL--EFSQEEYVM-LQQCADQ-VDIM-FTASAMDQ-- 72 (335)
Q Consensus 1 ~aGaDaVKFQ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--el~~e~~~~-L~~~~~~-~Gi~-f~stpfd~-- 72 (335)
++|||++-++. ||..|...|. .+....+.+ .++.++..+ +++.+++ .+++ +.-+.+++
T Consensus 35 ~~Gad~iElGi--------------PfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~~~~plv~m~Y~Npi~ 100 (256)
T TIGR00262 35 EAGADALELGV--------------PFSDPLADGPTIQAADLRALRAGMTPEKCFELLKKVRQKHPNIPIGLLTYYNLIF 100 (256)
T ss_pred HcCCCEEEECC--------------CCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEEeccHHh
Confidence 36888888887 3444433332 122222222 355555444 4444434 4555 34455554
Q ss_pred -----hhHHHHHhCCCCEEEEcCCCCCC-HHHHHHHHhcCCc-EEEeCCCCCCHHHHHHHHHHHHhcCCCCceeecccCC
Q psy17999 73 -----VSFDFLLSANVPFIKIGSGDSNN-IPLIKYAASKQKP-LIISTGMLPSIEHVDNIYTTVKQYHSNLSILHCVSAY 145 (335)
Q Consensus 73 -----~svd~l~~l~v~~~KIaS~d~~n-~~LL~~~a~~gkP-vilStG~~~tl~Ei~~Av~~i~~g~~~~~~~~c~~g~ 145 (335)
+-++.+.+.|++.+-|+---... .++++++-+.|.. +++=+..+ +.+.+...++... | .+.|-+
T Consensus 101 ~~G~e~f~~~~~~aGvdgviipDlp~ee~~~~~~~~~~~gl~~i~lv~P~T-~~eri~~i~~~~~-g-----fiy~vs-- 171 (256)
T TIGR00262 101 RKGVEEFYAKCKEVGVDGVLVADLPLEESGDLVEAAKKHGVKPIFLVAPNA-DDERLKQIAEKSQ-G-----FVYLVS-- 171 (256)
T ss_pred hhhHHHHHHHHHHcCCCEEEECCCChHHHHHHHHHHHHCCCcEEEEECCCC-CHHHHHHHHHhCC-C-----CEEEEE--
Confidence 44778888999998888443322 3456667777865 44556666 7777776555311 1 111111
Q ss_pred CCCCCCcccccCceEEeeecCCCCCCccCCCchHHHHHHHHCCCCCeecCCCCCChHHHHHHHHcCCc
Q psy17999 146 PTPYPTVKQYHSNLSILHCVSAYPTPYHDINLNVIHTLRSRYPDIPIGYSGHENGVHVCYAAVAMGAQ 213 (335)
Q Consensus 146 ~~~~~~~~~~~~~l~llHC~s~YP~~~~~~nL~~i~~L~~~fp~~pVG~SdHt~g~~~~~aAvalGA~ 213 (335)
...++.--+....--+..|..+|+.+ +.||..-..-........+..+||+
T Consensus 172 ----------------~~G~TG~~~~~~~~~~~~i~~lr~~~-~~pi~vgfGI~~~e~~~~~~~~GAD 222 (256)
T TIGR00262 172 ----------------RAGVTGARNRAASALNELVKRLKAYS-AKPVLVGFGISKPEQVKQAIDAGAD 222 (256)
T ss_pred ----------------CCCCCCCcccCChhHHHHHHHHHhhc-CCCEEEeCCCCCHHHHHHHHHcCCC
Confidence 01222222122223567788899877 7787432222224455567788887
No 168
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=90.37 E-value=16 Score=34.74 Aligned_cols=59 Identities=19% Similarity=0.271 Sum_probs=45.9
Q ss_pred HHHHHH-cCCceEeccCChhhHHHHHhCCCCEEEEcCCCCCCHHHHHHHHhcCCcEEEeC
Q psy17999 55 QQCADQ-VDIMFTASAMDQVSFDFLLSANVPFIKIGSGDSNNIPLIKYAASKQKPLIIST 113 (335)
Q Consensus 55 ~~~~~~-~Gi~f~stpfd~~svd~l~~l~v~~~KIaS~d~~n~~LL~~~a~~gkPvilSt 113 (335)
.+..++ .++.+...-|+++.++.+.+.|+++|==-|+.-.+..+++-+++.|.|+|+..
T Consensus 68 v~~i~~~~~~plSIDT~~~~v~e~al~~G~~iINdisg~~~~~~~~~l~~~~~~~vV~m~ 127 (257)
T cd00739 68 LEALRGELDVLISVDTFRAEVARAALEAGADIINDVSGGSDDPAMLEVAAEYGAPLVLMH 127 (257)
T ss_pred HHHHHhcCCCcEEEeCCCHHHHHHHHHhCCCEEEeCCCCCCChHHHHHHHHcCCCEEEEC
Confidence 344444 49999999999999999999999988744555334678888888999999953
No 169
>KOG2741|consensus
Probab=90.34 E-value=1.4 Score=43.82 Aligned_cols=80 Identities=14% Similarity=0.217 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHcCCceEeccCChhhHHHHH-hCCCCEEEEcCCCCCCHHHHHHHHhcCCcEEEeCCCCCCHHHHHHHHHH
Q psy17999 50 EYVMLQQCADQVDIMFTASAMDQVSFDFLL-SANVPFIKIGSGDSNNIPLIKYAASKQKPLIISTGMLPSIEHVDNIYTT 128 (335)
Q Consensus 50 ~~~~L~~~~~~~Gi~f~stpfd~~svd~l~-~l~v~~~KIaS~d~~n~~LL~~~a~~gkPvilStG~~~tl~Ei~~Av~~ 128 (335)
....=++.|+++++. -.+.|+ |.|.|. +-.||++-|++...+++..+--++..||+|++...++.+.+|.++.++.
T Consensus 42 s~~~A~~fAq~~~~~-~~k~y~--syEeLakd~~vDvVyi~~~~~qH~evv~l~l~~~K~VL~EKPla~n~~e~~~ivea 118 (351)
T KOG2741|consen 42 SLERAKEFAQRHNIP-NPKAYG--SYEELAKDPEVDVVYISTPNPQHYEVVMLALNKGKHVLCEKPLAMNVAEAEEIVEA 118 (351)
T ss_pred cHHHHHHHHHhcCCC-CCcccc--CHHHHhcCCCcCEEEeCCCCccHHHHHHHHHHcCCcEEecccccCCHHHHHHHHHH
Confidence 355567889999998 555565 555554 5679999999999999999999999999999999999999999999998
Q ss_pred HHhc
Q psy17999 129 VKQY 132 (335)
Q Consensus 129 i~~g 132 (335)
.+.+
T Consensus 119 A~~r 122 (351)
T KOG2741|consen 119 AEAR 122 (351)
T ss_pred HHHc
Confidence 8763
No 170
>PRK10206 putative oxidoreductase; Provisional
Probab=90.25 E-value=1.5 Score=43.04 Aligned_cols=57 Identities=12% Similarity=0.288 Sum_probs=51.7
Q ss_pred HHHHhCCCCEEEEcCCCCCCHHHHHHHHhcCCcEEEeCCCCCCHHHHHHHHHHHHhc
Q psy17999 76 DFLLSANVPFIKIGSGDSNNIPLIKYAASKQKPLIISTGMLPSIEHVDNIYTTVKQY 132 (335)
Q Consensus 76 d~l~~l~v~~~KIaS~d~~n~~LL~~~a~~gkPvilStG~~~tl~Ei~~Av~~i~~g 132 (335)
++|.+-++|++-|++..-.+.++..++.+.||+|++...++.|++|.++.++..++.
T Consensus 58 ell~~~~iD~V~I~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~ 114 (344)
T PRK10206 58 EVLNDPDVKLVVVCTHADSHFEYAKRALEAGKNVLVEKPFTPTLAEAKELFALAKSK 114 (344)
T ss_pred HHhcCCCCCEEEEeCCchHHHHHHHHHHHcCCcEEEecCCcCCHHHHHHHHHHHHHh
Confidence 455567799999999999999999999999999999999999999999999987763
No 171
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=90.13 E-value=2.9 Score=41.14 Aligned_cols=78 Identities=13% Similarity=0.097 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHcC--CceEe-ccCChhhHHHHHhCCCCEEEEc----CCCC---------CCHHHHHHHHh----cCCc
Q psy17999 49 EEYVMLQQCADQVD--IMFTA-SAMDQVSFDFLLSANVPFIKIG----SGDS---------NNIPLIKYAAS----KQKP 108 (335)
Q Consensus 49 e~~~~L~~~~~~~G--i~f~s-tpfd~~svd~l~~l~v~~~KIa----S~d~---------~n~~LL~~~a~----~gkP 108 (335)
+.+.++.+..++.+ +.+++ ++.+.+.+..+.+.|+|+++++ |... -++.+|..+++ .+.|
T Consensus 120 ~~~~~~i~~ik~~~p~v~Vi~G~v~t~~~A~~l~~aGaD~I~vg~g~G~~~~t~~~~g~g~p~~~~i~~v~~~~~~~~vp 199 (325)
T cd00381 120 VYVIEMIKFIKKKYPNVDVIAGNVVTAEAARDLIDAGADGVKVGIGPGSICTTRIVTGVGVPQATAVADVAAAARDYGVP 199 (325)
T ss_pred HHHHHHHHHHHHHCCCceEEECCCCCHHHHHHHHhcCCCEEEECCCCCcCcccceeCCCCCCHHHHHHHHHHHHhhcCCc
Confidence 33444445445544 77775 8999999999999999999984 1111 23334444432 4799
Q ss_pred EEEeCCCCCCHHHHHHHHH
Q psy17999 109 LIISTGMLPSIEHVDNIYT 127 (335)
Q Consensus 109 vilStG~~~tl~Ei~~Av~ 127 (335)
||-+=|.. +..++.+|+.
T Consensus 200 VIA~GGI~-~~~di~kAla 217 (325)
T cd00381 200 VIADGGIR-TSGDIVKALA 217 (325)
T ss_pred EEecCCCC-CHHHHHHHHH
Confidence 99888888 9999999876
No 172
>cd04261 AAK_AKii-LysC-BS AAK_AKii-LysC-BS: Amino Acid Kinase Superfamily (AAK), AKii; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine, and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase isoenzyme type, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In this organism and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regulated by the concerted action of lysine and
Probab=90.02 E-value=12 Score=34.65 Aligned_cols=38 Identities=21% Similarity=0.289 Sum_probs=26.6
Q ss_pred EEEEcCCCCCCHHHHHHHHh-------cC-CcEEEeCCCCCCHHHH
Q psy17999 85 FIKIGSGDSNNIPLIKYAAS-------KQ-KPLIISTGMLPSIEHV 122 (335)
Q Consensus 85 ~~KIaS~d~~n~~LL~~~a~-------~g-kPvilStG~~~tl~Ei 122 (335)
.+|+|+.-+.|.+.++.+++ .| .||+++.|+.....+.
T Consensus 3 ViK~GGs~l~~~~~~~~~~~~i~~l~~~g~~~vvV~sg~g~~~~~l 48 (239)
T cd04261 3 VQKFGGTSVASIERIKRVAERIKKRKKKGNQVVVVVSAMGGTTDEL 48 (239)
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEECCCCchhHHH
Confidence 58999999999887777654 24 5788788744344444
No 173
>PLN02389 biotin synthase
Probab=90.00 E-value=18 Score=36.46 Aligned_cols=142 Identities=12% Similarity=0.054 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHHcCCceEecc--CChhhHHHHHhCCCCEEEEcCCCC-----------CC----HHHHHHHHhcCCcE-
Q psy17999 48 QEEYVMLQQCADQVDIMFTASA--MDQVSFDFLLSANVPFIKIGSGDS-----------NN----IPLIKYAASKQKPL- 109 (335)
Q Consensus 48 ~e~~~~L~~~~~~~Gi~f~stp--fd~~svd~l~~l~v~~~KIaS~d~-----------~n----~~LL~~~a~~gkPv- 109 (335)
.+++.++.+..++.|+.+.++. .+.+.+..|.+.|++.|-+. -+. .+ +..++.+.+.|.++
T Consensus 152 ~e~i~eiir~ik~~~l~i~~s~G~l~~E~l~~LkeAGld~~~~~-LeTs~~~y~~i~~~~s~e~rl~ti~~a~~~Gi~v~ 230 (379)
T PLN02389 152 FNQILEYVKEIRGMGMEVCCTLGMLEKEQAAQLKEAGLTAYNHN-LDTSREYYPNVITTRSYDDRLETLEAVREAGISVC 230 (379)
T ss_pred HHHHHHHHHHHhcCCcEEEECCCCCCHHHHHHHHHcCCCEEEee-ecCChHHhCCcCCCCCHHHHHHHHHHHHHcCCeEe
Confidence 3456666666666677655443 67777777777777765431 110 01 13555555666655
Q ss_pred -EEeCCCCCCHHHHHHHHHHHHh-c-CCCCceeecccCCCCCCCCcccccCceEEeeecCCCC-CCcc-------CCCch
Q psy17999 110 -IISTGMLPSIEHVDNIYTTVKQ-Y-HSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYP-TPYH-------DINLN 178 (335)
Q Consensus 110 -ilStG~~~tl~Ei~~Av~~i~~-g-~~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~s~YP-~~~~-------~~nL~ 178 (335)
-+=.|+.-+.+|+..-+..++. . .. +-+-++=...+| ||.. .--|+
T Consensus 231 sg~IiGlgEt~edrv~~l~~Lr~L~~~~-----------------------~~v~l~~l~P~~GTpL~~~~~~s~~e~lr 287 (379)
T PLN02389 231 SGGIIGLGEAEEDRVGLLHTLATLPEHP-----------------------ESVPINALVAVKGTPLEDQKPVEIWEMVR 287 (379)
T ss_pred EEEEECCCCCHHHHHHHHHHHHhcccCC-----------------------cEEecccceecCCCcCCCCCCCCHHHHHH
Confidence 2224445566666666555554 2 11 111222111222 2221 12367
Q ss_pred HHHHHHHHCCCCCeecCC--CCCChHHHHHHHHcCCc
Q psy17999 179 VIHTLRSRYPDIPIGYSG--HENGVHVCYAAVAMGAQ 213 (335)
Q Consensus 179 ~i~~L~~~fp~~pVG~Sd--Ht~g~~~~~aAvalGA~ 213 (335)
.|...|-.+|+..+-.+. -+.|......|...||+
T Consensus 288 ~iAi~Rl~lP~~~i~i~~gr~~l~~~~~~~~l~~GAN 324 (379)
T PLN02389 288 MIATARIVMPKAMVRLSAGRVRFSMAEQALCFLAGAN 324 (379)
T ss_pred HHHHHHHHCCCccccccccccccChhHHHHHHHhCCC
Confidence 777777777876554332 24467777889999999
No 174
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=89.93 E-value=1.5 Score=43.70 Aligned_cols=68 Identities=21% Similarity=0.200 Sum_probs=55.8
Q ss_pred hcCCHHHHHHHHHHHHHcCCceEeccCC----------hhhHHHHHhCCCCEEEEcCCCCCCHHHHHHHHhcC--CcEEE
Q psy17999 44 LEFSQEEYVMLQQCADQVDIMFTASAMD----------QVSFDFLLSANVPFIKIGSGDSNNIPLIKYAASKQ--KPLII 111 (335)
Q Consensus 44 ~el~~e~~~~L~~~~~~~Gi~f~stpfd----------~~svd~l~~l~v~~~KIaS~d~~n~~LL~~~a~~g--kPvil 111 (335)
..|+.+++.+..++|+++|..+..+.-. .+.++.|.++|+|++-++ +.-++..+++.+ .|+++
T Consensus 44 ~nfs~~~l~e~i~~ah~~gkk~~V~~N~~~~~~~~~~~~~~l~~l~e~GvDaviv~-----Dpg~i~l~~e~~p~l~ih~ 118 (347)
T COG0826 44 LNFSVEDLAEAVELAHSAGKKVYVAVNTLLHNDELETLERYLDRLVELGVDAVIVA-----DPGLIMLARERGPDLPIHV 118 (347)
T ss_pred ccCCHHHHHHHHHHHHHcCCeEEEEeccccccchhhHHHHHHHHHHHcCCCEEEEc-----CHHHHHHHHHhCCCCcEEE
Confidence 4699999999999999999987776532 355788889999998764 677888888777 99999
Q ss_pred eCCCC
Q psy17999 112 STGML 116 (335)
Q Consensus 112 StG~~ 116 (335)
||=++
T Consensus 119 S~q~~ 123 (347)
T COG0826 119 STQAN 123 (347)
T ss_pred eeeEe
Confidence 98765
No 175
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=89.67 E-value=6.4 Score=41.19 Aligned_cols=153 Identities=12% Similarity=0.207 Sum_probs=90.9
Q ss_pred CCHHHHHHHHHHHHH------------cCCceEeccCChhhHHHHHhCCCCEEEEcCCCCCCH---HHHHHHHhc--CCc
Q psy17999 46 FSQEEYVMLQQCADQ------------VDIMFTASAMDQVSFDFLLSANVPFIKIGSGDSNNI---PLIKYAASK--QKP 108 (335)
Q Consensus 46 l~~e~~~~L~~~~~~------------~Gi~f~stpfd~~svd~l~~l~v~~~KIaS~d~~n~---~LL~~~a~~--gkP 108 (335)
++..++....+|-.. .|-.+-+.+.+.+-++.|.+.|+|++-|.+.+=.+. .+++++-+. +.+
T Consensus 212 ITr~DIlk~~~~p~~~~~~~d~~~~l~vgaavg~~~~~~~r~~~l~~ag~d~i~iD~~~g~~~~~~~~i~~ik~~~p~~~ 291 (505)
T PLN02274 212 VTRTDVKRVKGYPKLGKPSVGKDGKLLVGAAIGTRESDKERLEHLVKAGVDVVVLDSSQGDSIYQLEMIKYIKKTYPELD 291 (505)
T ss_pred EEHHHHHHHhhCcCccccccCCCCCEEEEEEEcCCccHHHHHHHHHHcCCCEEEEeCCCCCcHHHHHHHHHHHHhCCCCc
Confidence 345666666666221 133344456778889999999999999998865444 577787774 334
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHhcCCCCceeecccCCCCCCCCcccccCceEEeeecCCCCCCcc---CCCchHHHHHHH
Q psy17999 109 LIISTGMLPSIEHVDNIYTTVKQYHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYPTPYH---DINLNVIHTLRS 185 (335)
Q Consensus 109 vilStG~~~tl~Ei~~Av~~i~~g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~s~YP~~~~---~~nL~~i~~L~~ 185 (335)
|| --+.+ |.++-..+++ .|.. .+.. |+-.+ ..|++..++..- .-.+..+..+.+
T Consensus 292 vi-~g~v~-t~e~a~~a~~---aGaD---~i~v--g~g~G-------------~~~~t~~~~~~g~~~~~~i~~~~~~~~ 348 (505)
T PLN02274 292 VI-GGNVV-TMYQAQNLIQ---AGVD---GLRV--GMGSG-------------SICTTQEVCAVGRGQATAVYKVASIAA 348 (505)
T ss_pred EE-EecCC-CHHHHHHHHH---cCcC---EEEE--CCCCC-------------ccccCccccccCCCcccHHHHHHHHHH
Confidence 43 34456 8888777665 3433 1111 00000 135554332211 112333566667
Q ss_pred HCCCCCeecCCCCCChHHHHHHHHcCCc--EEEeccCCC
Q psy17999 186 RYPDIPIGYSGHENGVHVCYAAVAMGAQ--IIEKHFTLD 222 (335)
Q Consensus 186 ~fp~~pVG~SdHt~g~~~~~aAvalGA~--vIEkH~tld 222 (335)
.+ ++||..-+.-....-...|.++||+ ++=.-|+--
T Consensus 349 ~~-~vpVIadGGI~~~~di~kAla~GA~~V~vGs~~~~t 386 (505)
T PLN02274 349 QH-GVPVIADGGISNSGHIVKALTLGASTVMMGSFLAGT 386 (505)
T ss_pred hc-CCeEEEeCCCCCHHHHHHHHHcCCCEEEEchhhccc
Confidence 77 8999766666666677789999998 555555543
No 176
>PRK09389 (R)-citramalate synthase; Provisional
Probab=89.56 E-value=5.1 Score=41.66 Aligned_cols=51 Identities=27% Similarity=0.387 Sum_probs=36.3
Q ss_pred CCCCCccCCCchHHHHHHHHCCCCCeecCCCCC-C--hHHHHHHHHcCCcEEEeccCCC
Q psy17999 167 AYPTPYHDINLNVIHTLRSRYPDIPIGYSGHEN-G--VHVCYAAVAMGAQIIEKHFTLD 222 (335)
Q Consensus 167 ~YP~~~~~~nL~~i~~L~~~fp~~pVG~SdHt~-g--~~~~~aAvalGA~vIEkH~tld 222 (335)
.+-+|.+-.++ +..|++++ ++|+|+-.|.. | .+-+++|+..||+.|| .|+.
T Consensus 167 G~~~P~~~~~l--v~~l~~~~-~v~l~~H~HND~GlAvANalaAv~aGa~~Vd--~Ti~ 220 (488)
T PRK09389 167 GILTPEKTYEL--FKRLSELV-KGPVSIHCHNDFGLAVANTLAALAAGADQVH--VTIN 220 (488)
T ss_pred CCcCHHHHHHH--HHHHHhhc-CCeEEEEecCCccHHHHHHHHHHHcCCCEEE--EEcc
Confidence 34444443333 77888888 69999987764 4 5567999999999998 4554
No 177
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=89.51 E-value=4.6 Score=37.37 Aligned_cols=106 Identities=12% Similarity=0.193 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHHcC-Cce-EeccCChhhHHHHHhCCCCEEEEcCCCCCCHHHHHHHHhcCCcEEEeCCCCCCHHHHHHH
Q psy17999 48 QEEYVMLQQCADQVD-IMF-TASAMDQVSFDFLLSANVPFIKIGSGDSNNIPLIKYAASKQKPLIISTGMLPSIEHVDNI 125 (335)
Q Consensus 48 ~e~~~~L~~~~~~~G-i~f-~stpfd~~svd~l~~l~v~~~KIaS~d~~n~~LL~~~a~~gkPvilStG~~~tl~Ei~~A 125 (335)
.+.+..+.+.+++++ +.+ .-|+.|.++++.+.+.|.+|+--+. .|..+++++-+.+.|++= |.. |+.|+..|
T Consensus 44 ~~a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~aGA~FivsP~---~~~~v~~~~~~~~i~~iP--G~~-TptEi~~A 117 (204)
T TIGR01182 44 PVALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDAGAQFIVSPG---LTPELAKHAQDHGIPIIP--GVA-TPSEIMLA 117 (204)
T ss_pred ccHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEEECCC---CCHHHHHHHHHcCCcEEC--CCC-CHHHHHHH
Confidence 445555555555554 333 3489999999999999999994443 488999999999998887 777 99999998
Q ss_pred HHHHHhcCCCCceeecccCCCCCCCCcccccCceEEeeecCCCCCCccCCC-chHHHHHHHHCCCCCee
Q psy17999 126 YTTVKQYHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYPTPYHDIN-LNVIHTLRSRYPDIPIG 193 (335)
Q Consensus 126 v~~i~~g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~s~YP~~~~~~n-L~~i~~L~~~fp~~pVG 193 (335)
.+. |.. .+=-||+. .+. .+.|..|+.=||++++-
T Consensus 118 ~~~---Ga~-----------------------------~vKlFPA~--~~GG~~yikal~~plp~i~~~ 152 (204)
T TIGR01182 118 LEL---GIT-----------------------------ALKLFPAE--VSGGVKMLKALAGPFPQVRFC 152 (204)
T ss_pred HHC---CCC-----------------------------EEEECCch--hcCCHHHHHHHhccCCCCcEE
Confidence 763 432 01126754 355 78899999999988773
No 178
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=89.34 E-value=23 Score=34.67 Aligned_cols=139 Identities=15% Similarity=0.220 Sum_probs=85.3
Q ss_pred hcCCHHHHHHHHHHHHHcCCceEeccCChhhHHHHHhCCCCEEEEcCCC-------------CCC--------------H
Q psy17999 44 LEFSQEEYVMLQQCADQVDIMFTASAMDQVSFDFLLSANVPFIKIGSGD-------------SNN--------------I 96 (335)
Q Consensus 44 ~el~~e~~~~L~~~~~~~Gi~f~stpfd~~svd~l~~l~v~~~KIaS~d-------------~~n--------------~ 96 (335)
.+|+.+++..+.+.-. +++..+.+.|.|.++|..+. -.. .
T Consensus 142 ~~mt~~eI~~ii~~~~-------------~aA~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~ 208 (336)
T cd02932 142 RELTREEIAEVVDAFV-------------AAARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLL 208 (336)
T ss_pred CcCCHHHHHHHHHHHH-------------HHHHHHHHcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHH
Confidence 4699998887766433 45677778899999997532 111 4
Q ss_pred HHHHHHHhc---CCcEEEeCC-------CCCCHHHHHHHHHHHHhcCCCCceeecccCCCCCCCCcccccCceEEeeecC
Q psy17999 97 PLIKYAASK---QKPLIISTG-------MLPSIEHVDNIYTTVKQYHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVS 166 (335)
Q Consensus 97 ~LL~~~a~~---gkPvilStG-------~~~tl~Ei~~Av~~i~~g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~s 166 (335)
.+++++-+. +.||.+... +. +++|....++.+...+- ..+.+..|..+. . .
T Consensus 209 eiv~aIR~~vG~d~~v~vri~~~~~~~~g~-~~~e~~~ia~~Le~~gv--d~iev~~g~~~~---------~-------~ 269 (336)
T cd02932 209 EVVDAVRAVWPEDKPLFVRISATDWVEGGW-DLEDSVELAKALKELGV--DLIDVSSGGNSP---------A-------Q 269 (336)
T ss_pred HHHHHHHHHcCCCceEEEEEcccccCCCCC-CHHHHHHHHHHHHHcCC--CEEEECCCCCCc---------c-------c
Confidence 777777764 568888633 34 78887777777764212 223222221110 0 0
Q ss_pred CCCCCccCCCchHHHHHHHHCCCCCeecCCCCCChHHHHHHHHcC-CcEEE
Q psy17999 167 AYPTPYHDINLNVIHTLRSRYPDIPIGYSGHENGVHVCYAAVAMG-AQIIE 216 (335)
Q Consensus 167 ~YP~~~~~~nL~~i~~L~~~fp~~pVG~SdHt~g~~~~~aAvalG-A~vIE 216 (335)
.+|.+ ...++.....+++.. ++||.-.+.-.....+..+++.| |++|-
T Consensus 270 ~~~~~-~~~~~~~~~~ir~~~-~iPVi~~G~i~t~~~a~~~l~~g~aD~V~ 318 (336)
T cd02932 270 KIPVG-PGYQVPFAERIRQEA-GIPVIAVGLITDPEQAEAILESGRADLVA 318 (336)
T ss_pred ccCCC-ccccHHHHHHHHhhC-CCCEEEeCCCCCHHHHHHHHHcCCCCeeh
Confidence 02221 234567788899998 89997666555566666777777 66553
No 179
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=89.25 E-value=2.3 Score=39.77 Aligned_cols=71 Identities=8% Similarity=0.091 Sum_probs=58.7
Q ss_pred CCHHHHHHHHHHHHHcCCceEeccCChhhHHHHHhCCCCEEEEcCCCCCCHHHHHHHHhc-CCcEEEeCCCC
Q psy17999 46 FSQEEYVMLQQCADQVDIMFTASAMDQVSFDFLLSANVPFIKIGSGDSNNIPLIKYAASK-QKPLIISTGML 116 (335)
Q Consensus 46 l~~e~~~~L~~~~~~~Gi~f~stpfd~~svd~l~~l~v~~~KIaS~d~~n~~LL~~~a~~-gkPvilStG~~ 116 (335)
+|.-.-..+.++|+++|+.++--++++..+-.+.++|++++|+=-.++.-..+|+.+..- .-.-++-||+-
T Consensus 96 VsP~~~~~v~~~~~~~~i~~iPG~~TpsEi~~A~~~Ga~~vKlFPA~~~G~~~ikal~~p~p~i~~~ptGGV 167 (222)
T PRK07114 96 VTPLFNPDIAKVCNRRKVPYSPGCGSLSEIGYAEELGCEIVKLFPGSVYGPGFVKAIKGPMPWTKIMPTGGV 167 (222)
T ss_pred ECCCCCHHHHHHHHHcCCCEeCCCCCHHHHHHHHHCCCCEEEECcccccCHHHHHHHhccCCCCeEEeCCCC
Confidence 566667889999999999999999999999999999999999988778889999998862 22234555544
No 180
>PRK08444 hypothetical protein; Provisional
Probab=89.21 E-value=23 Score=35.28 Aligned_cols=176 Identities=15% Similarity=0.086 Sum_probs=96.0
Q ss_pred CHHHHHHHHHHHHHc--CCceEe-------------ccCChhhHHHHHhCCCCEEEEcCCCCC-----------------
Q psy17999 47 SQEEYVMLQQCADQV--DIMFTA-------------SAMDQVSFDFLLSANVPFIKIGSGDSN----------------- 94 (335)
Q Consensus 47 ~~e~~~~L~~~~~~~--Gi~f~s-------------tpfd~~svd~l~~l~v~~~KIaS~d~~----------------- 94 (335)
+.+.+.++.+..++. ++.+-+ -.-.++.+..|.+.|++.+=-++.++.
T Consensus 111 ~~e~y~e~ir~Ik~~~p~i~i~a~s~~Ei~~~a~~~g~~~~e~l~~LkeAGl~~~~g~~aEi~~~~vr~~I~p~k~~~~~ 190 (353)
T PRK08444 111 GYEWYLEIFKKIKEAYPNLHVKAMTAAEVDFLSRKFGKSYEEVLEDMLEYGVDSMPGGGAEIFDEEVRKKICKGKVSSER 190 (353)
T ss_pred CHHHHHHHHHHHHHHCCCceEeeCCHHHHHHHHHHcCCCHHHHHHHHHHhCcccCCCCCchhcCHHHHhhhCCCCCCHHH
Confidence 446677777777764 344432 122335567777778776544443332
Q ss_pred CHHHHHHHHhcCCcE----EEeCCCCCCHHHHHHHHHHHHh-cCCCCceeecccCCCCCCCCcccccCceEEeeecCCCC
Q psy17999 95 NIPLIKYAASKQKPL----IISTGMLPSIEHVDNIYTTVKQ-YHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYP 169 (335)
Q Consensus 95 n~~LL~~~a~~gkPv----ilStG~~~tl~Ei~~Av~~i~~-g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~s~YP 169 (335)
...+++.+-+.|.|+ |+-.| -|.+|..+-+..|+. .-. .|=. +.-+.+=+..-.
T Consensus 191 ~~~i~~~a~~~Gi~~~sg~l~G~g--Et~edrv~hl~~Lr~Lq~~--------t~gf-----------~~fIp~~f~~~~ 249 (353)
T PRK08444 191 WLEIHKYWHKKGKMSNATMLFGHI--ENREHRIDHMLRLRDLQDK--------TGGF-----------NAFIPLVYQREN 249 (353)
T ss_pred HHHHHHHHHHcCCCccceeEEecC--CCHHHHHHHHHHHHHhccc--------cCCc-----------eEEEecccCCCC
Confidence 233445556678775 33333 467777776666765 211 0100 111111111112
Q ss_pred CCc-------cCCCchHHHHHHHHCCCCC-eecCCCCCChHHHHHHHHcCCc-----EEEeccCCCCCCCCCCCCCCCCH
Q psy17999 170 TPY-------HDINLNVIHTLRSRYPDIP-IGYSGHENGVHVCYAAVAMGAQ-----IIEKHFTLDKSWKGSDHASSLTP 236 (335)
Q Consensus 170 ~~~-------~~~nL~~i~~L~~~fp~~p-VG~SdHt~g~~~~~aAvalGA~-----vIEkH~tld~~~~G~Dh~~Sl~p 236 (335)
||. ..-.|+.|...|=.+|++| |--|-=+.|..+++.|...||+ ++|-+++..-.. .+...+++
T Consensus 250 t~l~~~~~~~~~e~Lr~iAi~Rl~L~~i~ni~a~w~~~g~~~~q~~L~~Ga~D~ggt~~~e~i~~~ag~---~~~~~~~~ 326 (353)
T PRK08444 250 NYLKVEKFPSSQEILKTIAISRILLDNIPHIKAYWATLTLNLALVAQEFGANDLDGTIEKESIQSAAGA---KSANGLSL 326 (353)
T ss_pred CcCCCCCCCCHHHHHHHHHHHHHhcCCCCccccccccCcHHHHHHHHhcCCccCccccccccchhhccC---CCCCCCCH
Confidence 222 2223666665555455542 1112224578889999999997 888888875332 34446889
Q ss_pred HHHHHHHHHH
Q psy17999 237 PELKALVTGI 246 (335)
Q Consensus 237 ~el~~lv~~i 246 (335)
++|.++++++
T Consensus 327 ~~l~~~i~~~ 336 (353)
T PRK08444 327 EDFIFLIKDS 336 (353)
T ss_pred HHHHHHHHHc
Confidence 9999888764
No 181
>PF00224 PK: Pyruvate kinase, barrel domain; InterPro: IPR015793 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the two barrel domains, the beta/alpha-barrel, and the beta-barrel inserted within it.; GO: 0000287 magnesium ion binding, 0004743 pyruvate kinase activity, 0030955 potassium ion binding, 0006096 glycolysis; PDB: 3HQQ_W 3KTX_A 3E0V_A 3QV6_D 3QV7_D 1PKL_D 3HQP_A 3QV8_D 3HQO_C 3IS4_B ....
Probab=89.19 E-value=0.74 Score=45.69 Aligned_cols=88 Identities=25% Similarity=0.331 Sum_probs=60.9
Q ss_pred CHHHHHHHHHHHHHc--CCceEeccCChhhHHHHHhC--CCCEEEEcCCCC------CCHHH-----HHHHHhcCCcEEE
Q psy17999 47 SQEEYVMLQQCADQV--DIMFTASAMDQVSFDFLLSA--NVPFIKIGSGDS------NNIPL-----IKYAASKQKPLII 111 (335)
Q Consensus 47 ~~e~~~~L~~~~~~~--Gi~f~stpfd~~svd~l~~l--~v~~~KIaS~d~------~n~~L-----L~~~a~~gkPvil 111 (335)
+.++..+++++.++. .+.+++=.-+.++++-+.+. -.|.+-||-+|| ...|+ ++.+-+.|||||+
T Consensus 200 sa~dV~~lr~~l~~~~~~~~iiaKIE~~~~v~nl~eI~~~sDgimiaRGDLg~e~~~e~v~~~Qk~ii~~~~~~~kpvi~ 279 (348)
T PF00224_consen 200 SAEDVKELRKILGEKGKDIKIIAKIETKEAVENLDEILEASDGIMIARGDLGVEIPFEKVPIIQKRIIKKCNAAGKPVIV 279 (348)
T ss_dssp SHHHHHHHHHHHTCTTTTSEEEEEE-SHHHHHTHHHHHHHSSEEEEEHHHHHHHSTGGGHHHHHHHHHHHHHHHT-EEEE
T ss_pred chHHHHHHHHHhhhcCcccceeeccccHHHHhhHHHHhhhcCeEEEecCCcceeeeHHHHHHHHHHHHHHHHHhCCCeee
Confidence 467788888888775 46677777777776555441 168899987765 34454 4445567999999
Q ss_pred eCCC--------CCCHHHHHHHHHHHHhcCC
Q psy17999 112 STGM--------LPSIEHVDNIYTTVKQYHS 134 (335)
Q Consensus 112 StG~--------~~tl~Ei~~Av~~i~~g~~ 134 (335)
+|.| .||..|+-.+++.+..|..
T Consensus 280 ATq~Lesm~~~~~PTRaEv~Dv~nav~dg~d 310 (348)
T PF00224_consen 280 ATQMLESMIKNPIPTRAEVSDVANAVLDGAD 310 (348)
T ss_dssp ESSSSGGGGTSSS--HHHHHHHHHHHHHT-S
T ss_pred hhHhHHHHHhCCCCchHHHhhHHHHHHcCCC
Confidence 9998 4899999999999887654
No 182
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=89.18 E-value=15 Score=32.83 Aligned_cols=137 Identities=10% Similarity=0.101 Sum_probs=78.5
Q ss_pred CCHHHHHHHHHHHHHcCCceEec--cCChh--hHHHHHhCCCCEEEEcCCCCC--CHHHHHHHHhcCCcEEEe-CCCCCC
Q psy17999 46 FSQEEYVMLQQCADQVDIMFTAS--AMDQV--SFDFLLSANVPFIKIGSGDSN--NIPLIKYAASKQKPLIIS-TGMLPS 118 (335)
Q Consensus 46 l~~e~~~~L~~~~~~~Gi~f~st--pfd~~--svd~l~~l~v~~~KIaS~d~~--n~~LL~~~a~~gkPvilS-tG~~~t 118 (335)
+..+.+++|+++.. +..+++. .+|+. .++.+.+.|++++-+....-. ...+++++-+.|+++++. -+..-.
T Consensus 38 ~g~~~i~~l~~~~~--~~~i~~d~k~~d~~~~~~~~~~~~Gad~i~vh~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~t~ 115 (206)
T TIGR03128 38 EGIEAVKEMKEAFP--DRKVLADLKTMDAGEYEAEQAFAAGADIVTVLGVADDATIKGAVKAAKKHGKEVQVDLINVKDK 115 (206)
T ss_pred hCHHHHHHHHHHCC--CCEEEEEEeeccchHHHHHHHHHcCCCEEEEeccCCHHHHHHHHHHHHHcCCEEEEEecCCCCh
Confidence 34455555554421 4444443 34655 678888999999998876432 257888888899999986 354413
Q ss_pred HHHHHHHHHHHHhcCCCCceeecccCCCCCCCCcccccCceEEeeecCCCCC-CccCCCchHHHHHHHHCCCCCeecCCC
Q psy17999 119 IEHVDNIYTTVKQYHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYPT-PYHDINLNVIHTLRSRYPDIPIGYSGH 197 (335)
Q Consensus 119 l~Ei~~Av~~i~~g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~s~YP~-~~~~~nL~~i~~L~~~fp~~pVG~SdH 197 (335)
.+++..+.+. | . +++-++ ..|.. ......+..|..+++.+|..+|...+-
T Consensus 116 ~~~~~~~~~~---g-~-----------------------d~v~~~--pg~~~~~~~~~~~~~i~~l~~~~~~~~i~v~GG 166 (206)
T TIGR03128 116 VKRAKELKEL---G-A-----------------------DYIGVH--TGLDEQAKGQNPFEDLQTILKLVKEARVAVAGG 166 (206)
T ss_pred HHHHHHHHHc---C-C-----------------------CEEEEc--CCcCcccCCCCCHHHHHHHHHhcCCCcEEEECC
Confidence 4677666442 2 2 322221 12211 112245677888888886665532321
Q ss_pred CCChHHHHHHHHcCCcE
Q psy17999 198 ENGVHVCYAAVAMGAQI 214 (335)
Q Consensus 198 t~g~~~~~aAvalGA~v 214 (335)
....-.......||+.
T Consensus 167 -I~~~n~~~~~~~Ga~~ 182 (206)
T TIGR03128 167 -INLDTIPDVIKLGPDI 182 (206)
T ss_pred -cCHHHHHHHHHcCCCE
Confidence 1233444566889983
No 183
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=89.02 E-value=3.6 Score=39.05 Aligned_cols=92 Identities=22% Similarity=0.192 Sum_probs=61.7
Q ss_pred cCCcEEEeCCCCCCHHHHHHHHHHHHhcCCCCceeecccCCCCCCCCcccccCceEEeeecCCCCCCc----cCCC--ch
Q psy17999 105 KQKPLIISTGMLPSIEHVDNIYTTVKQYHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYPTPY----HDIN--LN 178 (335)
Q Consensus 105 ~gkPvilStG~~~tl~Ei~~Av~~i~~g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~s~YP~~~----~~~n--L~ 178 (335)
.++|+|+|-+.+ +.+++.++++.+..... +.+-++|.+...... ++.. ..
T Consensus 97 ~~~pvi~si~g~-~~~~~~~~a~~~~~~G~-----------------------d~ielN~~cP~~~~~~~~~~~~~~~~e 152 (289)
T cd02810 97 PGQPLIASVGGS-SKEDYVELARKIERAGA-----------------------KALELNLSCPNVGGGRQLGQDPEAVAN 152 (289)
T ss_pred CCCeEEEEeccC-CHHHHHHHHHHHHHhCC-----------------------CEEEEEcCCCCCCCCcccccCHHHHHH
Confidence 479999999999 99999999998876323 566677654332211 1111 23
Q ss_pred HHHHHHHHCCCCCeec--C-CCC--CChHHHHHHHHcCCcEEEeccCC
Q psy17999 179 VIHTLRSRYPDIPIGY--S-GHE--NGVHVCYAAVAMGAQIIEKHFTL 221 (335)
Q Consensus 179 ~i~~L~~~fp~~pVG~--S-dHt--~g~~~~~aAvalGA~vIEkH~tl 221 (335)
.+..+|+.. ++||+. + ..+ .-...+.++...||+.|.-|-+.
T Consensus 153 iv~~vr~~~-~~pv~vKl~~~~~~~~~~~~a~~l~~~Gad~i~~~~~~ 199 (289)
T cd02810 153 LLKAVKAAV-DIPLLVKLSPYFDLEDIVELAKAAERAGADGLTAINTI 199 (289)
T ss_pred HHHHHHHcc-CCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEccc
Confidence 577788877 778753 3 333 22455667788999999887653
No 184
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=88.78 E-value=4.5 Score=40.00 Aligned_cols=75 Identities=19% Similarity=0.289 Sum_probs=58.7
Q ss_pred HHHHHHHHcC-CceEe-ccCChhhHHHHHhCCCCEEEEcCCC-------------CCCHHH--HHHHHh-cCCcEEEeCC
Q psy17999 53 MLQQCADQVD-IMFTA-SAMDQVSFDFLLSANVPFIKIGSGD-------------SNNIPL--IKYAAS-KQKPLIISTG 114 (335)
Q Consensus 53 ~L~~~~~~~G-i~f~s-tpfd~~svd~l~~l~v~~~KIaS~d-------------~~n~~L--L~~~a~-~gkPvilStG 114 (335)
.+.+..++.. +.++. ++-+.+.+..|.+.|+|+++++-+. ..+|.| +..+++ .+.|||-+-|
T Consensus 130 ~I~~ir~~~p~~~vi~g~V~t~e~a~~l~~aGad~i~vg~~~G~~~~t~~~~g~~~~~w~l~ai~~~~~~~~ipVIAdGG 209 (326)
T PRK05458 130 MIQHIKKHLPETFVIAGNVGTPEAVRELENAGADATKVGIGPGKVCITKIKTGFGTGGWQLAALRWCAKAARKPIIADGG 209 (326)
T ss_pred HHHHHHhhCCCCeEEEEecCCHHHHHHHHHcCcCEEEECCCCCcccccccccCCCCCccHHHHHHHHHHHcCCCEEEeCC
Confidence 3666666764 88888 6999999999999999999987221 223344 777776 4899999999
Q ss_pred CCCCHHHHHHHHHH
Q psy17999 115 MLPSIEHVDNIYTT 128 (335)
Q Consensus 115 ~~~tl~Ei~~Av~~ 128 (335)
.. +..++.+|+..
T Consensus 210 I~-~~~Di~KaLa~ 222 (326)
T PRK05458 210 IR-THGDIAKSIRF 222 (326)
T ss_pred CC-CHHHHHHHHHh
Confidence 99 99999998764
No 185
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=88.74 E-value=2.4 Score=36.99 Aligned_cols=76 Identities=13% Similarity=0.114 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHcCCceEeccC-----ChhhHHH----HHhCCCCEEEEcCCCC---CCHHHHHHHHhc---CCcEEEeCC
Q psy17999 50 EYVMLQQCADQVDIMFTASAM-----DQVSFDF----LLSANVPFIKIGSGDS---NNIPLIKYAASK---QKPLIISTG 114 (335)
Q Consensus 50 ~~~~L~~~~~~~Gi~f~stpf-----d~~svd~----l~~l~v~~~KIaS~d~---~n~~LL~~~a~~---gkPvilStG 114 (335)
.++.+.+.+ +.+++++.... +.+.+.. +.+.|++++|..++.. .|+..++.+.+. +.|+++..|
T Consensus 102 ~~~~i~~~~-~~~~pv~iy~~p~~~~~~~~~~~~~~~~~~~g~~~iK~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~gg 180 (201)
T cd00945 102 EIAAVVEAA-DGGLPLKVILETRGLKTADEIAKAARIAAEAGADFIKTSTGFGGGGATVEDVKLMKEAVGGRVGVKAAGG 180 (201)
T ss_pred HHHHHHHHh-cCCceEEEEEECCCCCCHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCHHHHHHHHHhcccCCcEEEECC
Confidence 344444444 46898886554 4444332 3568999999999843 266666665443 458988888
Q ss_pred CCCCHHHHHHHHH
Q psy17999 115 MLPSIEHVDNIYT 127 (335)
Q Consensus 115 ~~~tl~Ei~~Av~ 127 (335)
.. +++.+..++.
T Consensus 181 ~~-~~~~~~~~~~ 192 (201)
T cd00945 181 IK-TLEDALAAIE 192 (201)
T ss_pred CC-CHHHHHHHHH
Confidence 88 7877776654
No 186
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=88.71 E-value=2.7 Score=40.74 Aligned_cols=79 Identities=19% Similarity=0.207 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHcCCceEec-----------------cCChh-hHHHHHhCCCCEEEEcCCC--------CCCHHHHHHH
Q psy17999 49 EEYVMLQQCADQVDIMFTAS-----------------AMDQV-SFDFLLSANVPFIKIGSGD--------SNNIPLIKYA 102 (335)
Q Consensus 49 e~~~~L~~~~~~~Gi~f~st-----------------pfd~~-svd~l~~l~v~~~KIaS~d--------~~n~~LL~~~ 102 (335)
+.-+++.++|+.+|+.+=.. --|++ ..+|+++.|+|++.|+=+. --|+++|+++
T Consensus 115 ~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~~~T~pe~a~~Fv~~TgvD~LAvaiGt~HG~Y~~p~l~~~~l~~I 194 (283)
T PRK07998 115 AFTKEAVDFAKSYGVPVEAELGAILGKEDDHVSEADCKTEPEKVKDFVERTGCDMLAVSIGNVHGLEDIPRIDIPLLKRI 194 (283)
T ss_pred HHHHHHHHHHHHcCCEEEEEeccCCCccccccccccccCCHHHHHHHHHHhCcCeeehhccccccCCCCCCcCHHHHHHH
Confidence 45788999999999876110 01333 3678889999999988743 1378999999
Q ss_pred Hhc-CCcEEEeCCCCCCHHHHHHHHH
Q psy17999 103 ASK-QKPLIISTGMLPSIEHVDNIYT 127 (335)
Q Consensus 103 a~~-gkPvilStG~~~tl~Ei~~Av~ 127 (335)
.+. +.|++|-=|.+.+.+++.+|++
T Consensus 195 ~~~~~vPLVlHGgSG~~~e~~~~ai~ 220 (283)
T PRK07998 195 AEVSPVPLVIHGGSGIPPEILRSFVN 220 (283)
T ss_pred HhhCCCCEEEeCCCCCCHHHHHHHHH
Confidence 875 8999998776657788877755
No 187
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=88.69 E-value=2.8 Score=42.01 Aligned_cols=79 Identities=9% Similarity=0.130 Sum_probs=61.1
Q ss_pred CCHHHHHHHHHHHHHcCCceEeccCChhhHHHHHhCCCCEEEEcCCCCCC-------HHHHHHHHh-cCCcEEEeCCCCC
Q psy17999 46 FSQEEYVMLQQCADQVDIMFTASAMDQVSFDFLLSANVPFIKIGSGDSNN-------IPLIKYAAS-KQKPLIISTGMLP 117 (335)
Q Consensus 46 l~~e~~~~L~~~~~~~Gi~f~stpfd~~svd~l~~l~v~~~KIaS~d~~n-------~~LL~~~a~-~gkPvilStG~~~ 117 (335)
++++.+++|++... +-.++-.+.+.+.+..+.++|+|.|.|.-.--++ +..|.++.+ .+.|||++-|..
T Consensus 223 ~~w~~i~~ir~~~~--~pviiKgV~~~eda~~a~~~G~d~I~VSnhGGrqld~~~~~~~~L~ei~~~~~~~vi~dGGIr- 299 (361)
T cd04736 223 FNWQDLRWLRDLWP--HKLLVKGIVTAEDAKRCIELGADGVILSNHGGRQLDDAIAPIEALAEIVAATYKPVLIDSGIR- 299 (361)
T ss_pred CCHHHHHHHHHhCC--CCEEEecCCCHHHHHHHHHCCcCEEEECCCCcCCCcCCccHHHHHHHHHHHhCCeEEEeCCCC-
Confidence 67777777766552 4566778899999999999999999986544333 446666665 489999999999
Q ss_pred CHHHHHHHHH
Q psy17999 118 SIEHVDNIYT 127 (335)
Q Consensus 118 tl~Ei~~Av~ 127 (335)
+-.+|.+|+.
T Consensus 300 ~g~Dv~KALa 309 (361)
T cd04736 300 RGSDIVKALA 309 (361)
T ss_pred CHHHHHHHHH
Confidence 9999998865
No 188
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=88.54 E-value=11 Score=36.97 Aligned_cols=133 Identities=10% Similarity=0.141 Sum_probs=77.3
Q ss_pred CCHHHHHHHHHHHHHcCCceEeccCChhhHHHHHhCCCCEEEE-----cCCCCCCHHHHHHHHh-----cCCcEEEeCCC
Q psy17999 46 FSQEEYVMLQQCADQVDIMFTASAMDQVSFDFLLSANVPFIKI-----GSGDSNNIPLIKYAAS-----KQKPLIISTGM 115 (335)
Q Consensus 46 l~~e~~~~L~~~~~~~Gi~f~stpfd~~svd~l~~l~v~~~KI-----aS~d~~n~~LL~~~a~-----~gkPvilStG~ 115 (335)
-+.+++.+..+.+.+.|.+++= + .+|+|.-|+ ||.-+.+.+++.++-+ .++||.+++-.
T Consensus 64 ~~p~~~~~aA~~~~~~g~d~ID-------l----N~GCP~~~v~~~g~Gs~Ll~~p~~~~~iv~av~~~~~~PVsvKiR~ 132 (318)
T TIGR00742 64 SDPNDLAKCAKIAEKRGYDEIN-------L----NVGCPSDRVQNGNFGACLMGNADLVADCVKAMQEAVNIPVTVKHRI 132 (318)
T ss_pred CCHHHHHHHHHHHHhCCCCEEE-------E----ECCCCHHHhCCCCeehHhhcCHHHHHHHHHHHHHHhCCCeEEEEec
Confidence 3556666666666665533321 1 134565554 7778899998887654 47999999843
Q ss_pred CC-CHHHHH---HHHHHHHhcCCCCceeecccCCCCCCCCcccccCceEEeeecC----CCCCC----ccCCCchHHHHH
Q psy17999 116 LP-SIEHVD---NIYTTVKQYHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVS----AYPTP----YHDINLNVIHTL 183 (335)
Q Consensus 116 ~~-tl~Ei~---~Av~~i~~g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~s----~YP~~----~~~~nL~~i~~L 183 (335)
.. ..++.+ ..++.+.+.+. +.+.+|+-+ .|..+ ...+|+..|..+
T Consensus 133 g~~~~~~~~~~~~~~~~l~~~G~-----------------------~~itvHgRt~~~qg~sg~~~~~~~~~~~~~i~~v 189 (318)
T TIGR00742 133 GIDPLDSYEFLCDFVEIVSGKGC-----------------------QNFIVHARKAWLSGLSPKENREIPPLRYERVYQL 189 (318)
T ss_pred CCCCcchHHHHHHHHHHHHHcCC-----------------------CEEEEeCCchhhcCCCccccccCCchhHHHHHHH
Confidence 21 333334 44444444223 567788754 35322 123689999999
Q ss_pred HHHCCCCCeecCCCCCChHHHHHHHHcCCc
Q psy17999 184 RSRYPDIPIGYSGHENGVHVCYAAVAMGAQ 213 (335)
Q Consensus 184 ~~~fp~~pVG~SdHt~g~~~~~aAvalGA~ 213 (335)
++.+|++||...+=-....-+...+. ||+
T Consensus 190 k~~~~~ipVi~NGdI~s~~da~~~l~-g~d 218 (318)
T TIGR00742 190 KKDFPHLTIEINGGIKNSEQIKQHLS-HVD 218 (318)
T ss_pred HHhCCCCcEEEECCcCCHHHHHHHHh-CCC
Confidence 99888899854433333333332332 665
No 189
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=88.54 E-value=4.5 Score=36.31 Aligned_cols=73 Identities=12% Similarity=0.128 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHcCCceEeccCChhhHHHHHhCCCCEEEEcCCCCCCHHHHHHHHhc--CCcEEEeCCCCCCHHHHHH
Q psy17999 50 EYVMLQQCADQVDIMFTASAMDQVSFDFLLSANVPFIKIGSGDSNNIPLIKYAASK--QKPLIISTGMLPSIEHVDN 124 (335)
Q Consensus 50 ~~~~L~~~~~~~Gi~f~stpfd~~svd~l~~l~v~~~KIaS~d~~n~~LL~~~a~~--gkPvilStG~~~tl~Ei~~ 124 (335)
....+.++|+++|+.++..+.+.+.+..+.+.|+|++|+-.....-..+++.+.+. +.|++-+-|. +.+.+..
T Consensus 85 ~~~~~~~~~~~~~~~~i~gv~t~~e~~~A~~~Gad~i~~~p~~~~g~~~~~~l~~~~~~~p~~a~GGI--~~~n~~~ 159 (190)
T cd00452 85 LDPEVVKAANRAGIPLLPGVATPTEIMQALELGADIVKLFPAEAVGPAYIKALKGPFPQVRFMPTGGV--SLDNAAE 159 (190)
T ss_pred CCHHHHHHHHHcCCcEECCcCCHHHHHHHHHCCCCEEEEcCCcccCHHHHHHHHhhCCCCeEEEeCCC--CHHHHHH
Confidence 45679999999999999999999999999999999999976666678888888653 4666555554 5655554
No 190
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=88.50 E-value=4.5 Score=42.12 Aligned_cols=129 Identities=15% Similarity=0.149 Sum_probs=74.9
Q ss_pred CCceEeccCChhhHHHHHhCCCCEEEEcCCCC---CCHHHHHHHHhc--CCcEEEeCCCCCCHHHHHHHHHHHHhcCCCC
Q psy17999 62 DIMFTASAMDQVSFDFLLSANVPFIKIGSGDS---NNIPLIKYAASK--QKPLIISTGMLPSIEHVDNIYTTVKQYHSNL 136 (335)
Q Consensus 62 Gi~f~stpfd~~svd~l~~l~v~~~KIaS~d~---~n~~LL~~~a~~--gkPvilStG~~~tl~Ei~~Av~~i~~g~~~~ 136 (335)
|+.+-.++.+.+-++.|.+.|++++-|-+.+= ..+.+++++.+. +.||+..+. . |.++.+.+++ .|..
T Consensus 233 gaavg~~~~~~~~~~~l~~ag~d~i~id~a~G~s~~~~~~i~~ik~~~~~~~v~aG~V-~-t~~~a~~~~~---aGad-- 305 (495)
T PTZ00314 233 GAAISTRPEDIERAAALIEAGVDVLVVDSSQGNSIYQIDMIKKLKSNYPHVDIIAGNV-V-TADQAKNLID---AGAD-- 305 (495)
T ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCchHHHHHHHHHHhhCCCceEEECCc-C-CHHHHHHHHH---cCCC--
Confidence 34444455666778889999999999887433 335788888876 467776433 3 6777776654 2433
Q ss_pred ceeecccCCCCCCCCcccccCceEEeeecCCCCCCccCCCchHHHHH---HHHCCCCCeecCCCCCChHHHHHHHHcCCc
Q psy17999 137 SILHCVSAYPTPYPTVKQYHSNLSILHCVSAYPTPYHDINLNVIHTL---RSRYPDIPIGYSGHENGVHVCYAAVAMGAQ 213 (335)
Q Consensus 137 ~~~~c~~g~~~~~~~~~~~~~~l~llHC~s~YP~~~~~~nL~~i~~L---~~~fp~~pVG~SdHt~g~~~~~aAvalGA~ 213 (335)
.+-. |+..+ -+|++...+...-..+.+|..+ .+.+ ++||.-.+.-....-..-|.++||+
T Consensus 306 -~I~v--g~g~G-------------s~~~t~~~~~~g~p~~~ai~~~~~~~~~~-~v~vIadGGi~~~~di~kAla~GA~ 368 (495)
T PTZ00314 306 -GLRI--GMGSG-------------SICITQEVCAVGRPQASAVYHVARYARER-GVPCIADGGIKNSGDICKALALGAD 368 (495)
T ss_pred -EEEE--CCcCC-------------cccccchhccCCCChHHHHHHHHHHHhhc-CCeEEecCCCCCHHHHHHHHHcCCC
Confidence 1111 11100 1255543332222234443333 3446 7898766665555556679999998
Q ss_pred E
Q psy17999 214 I 214 (335)
Q Consensus 214 v 214 (335)
.
T Consensus 369 ~ 369 (495)
T PTZ00314 369 C 369 (495)
T ss_pred E
Confidence 3
No 191
>PRK06256 biotin synthase; Validated
Probab=88.26 E-value=20 Score=34.90 Aligned_cols=44 Identities=25% Similarity=0.259 Sum_probs=26.8
Q ss_pred chHHHHHHHHCCCCCeecCCCCCC--hHHHHHHHHcCCc--EEEeccCC
Q psy17999 177 LNVIHTLRSRYPDIPIGYSGHENG--VHVCYAAVAMGAQ--IIEKHFTL 221 (335)
Q Consensus 177 L~~i~~L~~~fp~~pVG~SdHt~g--~~~~~aAvalGA~--vIEkH~tl 221 (335)
++.|..+|-.+|+..|-.|+.-.. -....++. .||+ ++--+.|-
T Consensus 258 l~~ia~~Rl~~p~~~I~~~~gr~~~~~~~~~~~~-~g~~~~~~g~~lt~ 305 (336)
T PRK06256 258 LKTIAIFRLINPDKEIRIAGGREVNLRSLQPLGL-GGANSVIVGNYLTT 305 (336)
T ss_pred HHHHHHHHHHCCCCeeEecCchhhhchhhHHHHh-ccCceeeECCcccC
Confidence 566677788889998888765421 11222344 4988 55655543
No 192
>PRK00915 2-isopropylmalate synthase; Validated
Probab=88.16 E-value=11 Score=39.30 Aligned_cols=149 Identities=18% Similarity=0.249 Sum_probs=86.9
Q ss_pred hcCCHHHHHHHHHHHHHcCCceEeccCChhhHHHHHhCCCCEEEEcCCCC--CCHHHHHHHHhcCC-cEEEeCCCCCCHH
Q psy17999 44 LEFSQEEYVMLQQCADQVDIMFTASAMDQVSFDFLLSANVPFIKIGSGDS--NNIPLIKYAASKQK-PLIISTGMLPSIE 120 (335)
Q Consensus 44 ~el~~e~~~~L~~~~~~~Gi~f~stpfd~~svd~l~~l~v~~~KIaS~d~--~n~~LL~~~a~~gk-PvilStG~~~tl~ 120 (335)
..|+.++-.++.+...+.| |+.|-+|+.-. ..+..++++++..+ +-|..-+.+ ..+
T Consensus 21 ~~~s~e~K~~ia~~L~~~G--------------------v~~IE~G~p~~s~~d~~~v~~i~~~~~~~~i~a~~r~-~~~ 79 (513)
T PRK00915 21 ASLTVEEKLQIAKQLERLG--------------------VDVIEAGFPASSPGDFEAVKRIARTVKNSTVCGLARA-VKK 79 (513)
T ss_pred CCCCHHHHHHHHHHHHHcC--------------------CCEEEEcCCCCChHHHHHHHHHHhhCCCCEEEEEccC-CHH
Confidence 3577777777666555555 55555544322 23566777766544 444544555 789
Q ss_pred HHHHHHHHHHh-cCCCCceeecccCCCCCCCCcccccCceEEeeecCCC------CCCc-cCCC--chHHHHHHHHCCCC
Q psy17999 121 HVDNIYTTVKQ-YHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAY------PTPY-HDIN--LNVIHTLRSRYPDI 190 (335)
Q Consensus 121 Ei~~Av~~i~~-g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~s~Y------P~~~-~~~n--L~~i~~L~~~fp~~ 190 (335)
+++.|++.+.. +.. .+.+.-.+|.. -... +.++ ...+...|+. +.
T Consensus 80 did~a~~a~~~~~~~-----------------------~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~--g~ 134 (513)
T PRK00915 80 DIDAAAEALKPAEAP-----------------------RIHTFIATSPIHMEYKLKMSREEVLEMAVEAVKYARSY--TD 134 (513)
T ss_pred HHHHHHHHhhcCCCC-----------------------EEEEEECCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHC--CC
Confidence 99999988765 433 33333333311 1111 1111 1345555553 45
Q ss_pred CeecC--C---CCCC--hHHHHHHHHcCCcEEEeccCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q psy17999 191 PIGYS--G---HENG--VHVCYAAVAMGAQIIEKHFTLDKSWKGSDHASSLTPPELKALVTGIRD 248 (335)
Q Consensus 191 pVG~S--d---Ht~g--~~~~~aAvalGA~vIEkH~tld~~~~G~Dh~~Sl~p~el~~lv~~ir~ 248 (335)
.|-|+ | ++.. ..++.++..+||+.|- + +|-.-.++|+++..+++.+++
T Consensus 135 ~v~f~~ed~~r~d~~~l~~~~~~~~~~Ga~~i~----l------~DTvG~~~P~~~~~~i~~l~~ 189 (513)
T PRK00915 135 DVEFSAEDATRTDLDFLCRVVEAAIDAGATTIN----I------PDTVGYTTPEEFGELIKTLRE 189 (513)
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHHHHcCCCEEE----E------ccCCCCCCHHHHHHHHHHHHH
Confidence 56543 2 3333 4456678899998654 2 277778899999999999875
No 193
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=88.09 E-value=18 Score=36.31 Aligned_cols=144 Identities=13% Similarity=0.053 Sum_probs=78.8
Q ss_pred CHHHHHHHHHHHHHcCCceEe--cc-CChhhHHHHHhCCCCEEEEcCCC--------C-CCHHHHHHHHhcCCcEEEeCC
Q psy17999 47 SQEEYVMLQQCADQVDIMFTA--SA-MDQVSFDFLLSANVPFIKIGSGD--------S-NNIPLIKYAASKQKPLIISTG 114 (335)
Q Consensus 47 ~~e~~~~L~~~~~~~Gi~f~s--tp-fd~~svd~l~~l~v~~~KIaS~d--------~-~n~~LL~~~a~~gkPvilStG 114 (335)
..+...++.+..++.|+.+.. ++ ...+-++.+.+.|++++-|..+. - +...+.+.+.+.+.|||. -+
T Consensus 116 ~p~l~~~iv~~~~~~~V~v~vr~~~~~~~e~a~~l~eaGvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~~~ipVIa-G~ 194 (368)
T PRK08649 116 KPELITERIAEIRDAGVIVAVSLSPQRAQELAPTVVEAGVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYELDVPVIV-GG 194 (368)
T ss_pred CHHHHHHHHHHHHhCeEEEEEecCCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCcCCHHHHHHHHHHCCCCEEE-eC
Confidence 445555555666666665432 22 45567788899999999996532 1 334455566667999998 22
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCceeecccCCCCCCCCcccccCceEEeeecCCCCCCccCCCchHHHHHHH---HC----
Q psy17999 115 MLPSIEHVDNIYTTVKQYHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYPTPYHDINLNVIHTLRS---RY---- 187 (335)
Q Consensus 115 ~~~tl~Ei~~Av~~i~~g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~s~YP~~~~~~nL~~i~~L~~---~f---- 187 (335)
.. |.+...++++ .|.. .+..-+|-- . -|++...+...-.-+.+|....+ .|
T Consensus 195 V~-t~e~A~~l~~---aGAD---~V~VG~G~G-----------s----~~~t~~~~g~g~p~~~ai~~~~~a~~~~l~~~ 252 (368)
T PRK08649 195 CV-TYTTALHLMR---TGAA---GVLVGIGPG-----------A----ACTSRGVLGIGVPMATAIADVAAARRDYLDET 252 (368)
T ss_pred CC-CHHHHHHHHH---cCCC---EEEECCCCC-----------c----CCCCcccCCCCcCHHHHHHHHHHHHHHhhhhh
Confidence 44 7776666654 3543 333333311 1 14432222211122333333221 11
Q ss_pred --CCCCeecCCCCCChHHHHHHHHcCCc
Q psy17999 188 --PDIPIGYSGHENGVHVCYAAVAMGAQ 213 (335)
Q Consensus 188 --p~~pVG~SdHt~g~~~~~aAvalGA~ 213 (335)
.++||.-++.-....-...|.++||+
T Consensus 253 ~~~~vpVIAdGGI~~~~diakAlalGAd 280 (368)
T PRK08649 253 GGRYVHVIADGGIGTSGDIAKAIACGAD 280 (368)
T ss_pred cCCCCeEEEeCCCCCHHHHHHHHHcCCC
Confidence 14788666555545555678999998
No 194
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=88.05 E-value=22 Score=35.04 Aligned_cols=135 Identities=18% Similarity=0.140 Sum_probs=81.0
Q ss_pred hcCCHHHHHHHHHHHHHcCCceEeccCChhhHHHHHhCCCCEEEEcCC----------CCCCH-----------------
Q psy17999 44 LEFSQEEYVMLQQCADQVDIMFTASAMDQVSFDFLLSANVPFIKIGSG----------DSNNI----------------- 96 (335)
Q Consensus 44 ~el~~e~~~~L~~~~~~~Gi~f~stpfd~~svd~l~~l~v~~~KIaS~----------d~~n~----------------- 96 (335)
-+|+.+++.++.+.-.+ ++..+.+.|.|.++|..+ ..+|.
T Consensus 125 ~~mt~~eI~~i~~~f~~-------------aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~ 191 (353)
T cd02930 125 RELSEEEIEQTIEDFAR-------------CAALAREAGYDGVEIMGSEGYLINQFLAPRTNKRTDEWGGSFENRMRFPV 191 (353)
T ss_pred CCCCHHHHHHHHHHHHH-------------HHHHHHHcCCCEEEEecccchHHHHhcCCccCCCcCccCCCHHHHhHHHH
Confidence 36999998888765433 667778899999999773 35552
Q ss_pred HHHHHHHhc-CCc--EEEeC-------CCCCCHHHHHHHHHHHHhcCCCCceeecccCCCCCCCCcccccCceEEeeecC
Q psy17999 97 PLIKYAASK-QKP--LIIST-------GMLPSIEHVDNIYTTVKQYHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVS 166 (335)
Q Consensus 97 ~LL~~~a~~-gkP--vilSt-------G~~~tl~Ei~~Av~~i~~g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~s 166 (335)
.+++++.+. |.+ |.+.. |+. +++|....++.+...+- .++....|.-
T Consensus 192 eiv~aIR~~vG~d~~v~iRi~~~D~~~~g~-~~~e~~~i~~~Le~~G~--d~i~vs~g~~-------------------- 248 (353)
T cd02930 192 EIVRAVRAAVGEDFIIIYRLSMLDLVEGGS-TWEEVVALAKALEAAGA--DILNTGIGWH-------------------- 248 (353)
T ss_pred HHHHHHHHHcCCCceEEEEecccccCCCCC-CHHHHHHHHHHHHHcCC--CEEEeCCCcC--------------------
Confidence 455555553 555 44333 234 77877777777765211 2222221110
Q ss_pred CCCCC------ccCCCchHHHHHHHHCCCCCeecCCCCCChHHHHHHHHcC-CcEE
Q psy17999 167 AYPTP------YHDINLNVIHTLRSRYPDIPIGYSGHENGVHVCYAAVAMG-AQII 215 (335)
Q Consensus 167 ~YP~~------~~~~nL~~i~~L~~~fp~~pVG~SdHt~g~~~~~aAvalG-A~vI 215 (335)
.-|++ ....++.....+|+.+ ++||.-.+--........+++.| ++++
T Consensus 249 e~~~~~~~~~~~~~~~~~~~~~ik~~v-~iPVi~~G~i~~~~~a~~~i~~g~~D~V 303 (353)
T cd02930 249 EARVPTIATSVPRGAFAWATAKLKRAV-DIPVIASNRINTPEVAERLLADGDADMV 303 (353)
T ss_pred CCCCccccccCCchhhHHHHHHHHHhC-CCCEEEcCCCCCHHHHHHHHHCCCCChh
Confidence 00111 1223566677899998 89997776665666666677766 5543
No 195
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=88.03 E-value=27 Score=34.45 Aligned_cols=145 Identities=11% Similarity=0.052 Sum_probs=81.1
Q ss_pred hcCCHHHHHHHHHHHHHcCCceEeccCChhhHHHHHhCCCCEEEEcC----------CCCCCH-----------------
Q psy17999 44 LEFSQEEYVMLQQCADQVDIMFTASAMDQVSFDFLLSANVPFIKIGS----------GDSNNI----------------- 96 (335)
Q Consensus 44 ~el~~e~~~~L~~~~~~~Gi~f~stpfd~~svd~l~~l~v~~~KIaS----------~d~~n~----------------- 96 (335)
-+|+.+++.++.+.-. .++..+.+.|.|.+.|.. ...+|.
T Consensus 129 ~~mt~~eI~~ii~~f~-------------~AA~ra~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~ 195 (343)
T cd04734 129 KAMEEEDIEEIIAAFA-------------DAARRCQAGGLDGVELQAAHGHLIDQFLSPLTNRRTDEYGGSLENRMRFLL 195 (343)
T ss_pred CcCCHHHHHHHHHHHH-------------HHHHHHHHcCCCEEEEccccchHHHHhhCCCcCCCCCcCCCCHHHHhHHHH
Confidence 3699999888775432 345666777888888776 223333
Q ss_pred HHHHHHHhc-CCcE--EEeCCCC------CCHHHHHHHHHHHHh-cCCCCceeecccCCCCCCCCcccccCceEEeeecC
Q psy17999 97 PLIKYAASK-QKPL--IISTGML------PSIEHVDNIYTTVKQ-YHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVS 166 (335)
Q Consensus 97 ~LL~~~a~~-gkPv--ilStG~~------~tl~Ei~~Av~~i~~-g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~s 166 (335)
.+|+++.+. |.++ -+--|.. .|++|....++.+.. |.- .++....|.... +..--|
T Consensus 196 eiv~~ir~~vg~~~~v~iRl~~~~~~~~G~~~~e~~~~~~~l~~~G~v--d~i~vs~g~~~~---------~~~~~~--- 261 (343)
T cd04734 196 EVLAAVRAAVGPDFIVGIRISGDEDTEGGLSPDEALEIAARLAAEGLI--DYVNVSAGSYYT---------LLGLAH--- 261 (343)
T ss_pred HHHHHHHHHcCCCCeEEEEeehhhccCCCCCHHHHHHHHHHHHhcCCC--CEEEeCCCCCCc---------cccccc---
Confidence 555555553 6554 4433431 267788777777765 322 333333332100 000000
Q ss_pred CCCC-C-ccCCCchHHHHHHHHCCCCCeecCCCCCChHHHHHHHHcC-CcEEE
Q psy17999 167 AYPT-P-YHDINLNVIHTLRSRYPDIPIGYSGHENGVHVCYAAVAMG-AQIIE 216 (335)
Q Consensus 167 ~YP~-~-~~~~nL~~i~~L~~~fp~~pVG~SdHt~g~~~~~aAvalG-A~vIE 216 (335)
.+|. . ....++..+..+|+.. ++||..++=-.....+..++.-| |++|-
T Consensus 262 ~~~~~~~~~~~~~~~~~~ik~~~-~ipvi~~G~i~~~~~~~~~l~~~~~D~V~ 313 (343)
T cd04734 262 VVPSMGMPPGPFLPLAARIKQAV-DLPVFHAGRIRDPAEAEQALAAGHADMVG 313 (343)
T ss_pred ccCCCCCCcchhHHHHHHHHHHc-CCCEEeeCCCCCHHHHHHHHHcCCCCeee
Confidence 0111 1 1345677788899988 89998776444456666777766 66543
No 196
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=87.97 E-value=12 Score=38.29 Aligned_cols=121 Identities=17% Similarity=0.120 Sum_probs=68.0
Q ss_pred cCChhhHHHHHhCCCCEEEEcCCCCCCHHH---HHHHHhc--CCcEEEeCCCCCCHHHHHHHHHHHHhcCCCCceeeccc
Q psy17999 69 AMDQVSFDFLLSANVPFIKIGSGDSNNIPL---IKYAASK--QKPLIISTGMLPSIEHVDNIYTTVKQYHSNLSILHCVS 143 (335)
Q Consensus 69 pfd~~svd~l~~l~v~~~KIaS~d~~n~~L---L~~~a~~--gkPvilStG~~~tl~Ei~~Av~~i~~g~~~~~~~~c~~ 143 (335)
+.+.+.++.|.+.|+|++-|-+++=.+..+ ++++.+. +.+||+ -+.+ |.++...+++. |.. .+- .
T Consensus 152 ~~~~~~v~~lv~aGvDvI~iD~a~g~~~~~~~~v~~ik~~~p~~~vi~-g~V~-T~e~a~~l~~a---GaD---~I~--v 221 (404)
T PRK06843 152 IDTIERVEELVKAHVDILVIDSAHGHSTRIIELVKKIKTKYPNLDLIA-GNIV-TKEAALDLISV---GAD---CLK--V 221 (404)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCCChhHHHHHHHHHhhCCCCcEEE-EecC-CHHHHHHHHHc---CCC---EEE--E
Confidence 445578999999999999987776545444 4555443 234433 3445 78887777653 432 111 1
Q ss_pred CCCCCCCCcccccCceEEeeecCCCCCCccCCCchHHHHHH---HHCCCCCeecCCCCCChHHHHHHHHcCCc
Q psy17999 144 AYPTPYPTVKQYHSNLSILHCVSAYPTPYHDINLNVIHTLR---SRYPDIPIGYSGHENGVHVCYAAVAMGAQ 213 (335)
Q Consensus 144 g~~~~~~~~~~~~~~l~llHC~s~YP~~~~~~nL~~i~~L~---~~fp~~pVG~SdHt~g~~~~~aAvalGA~ 213 (335)
|+-.+. -|++--.+.....++..|..++ +.+ ++||.-.+.-.-..-..-|.++||+
T Consensus 222 G~g~Gs-------------~c~tr~~~g~g~p~ltai~~v~~~~~~~-~vpVIAdGGI~~~~Di~KALalGA~ 280 (404)
T PRK06843 222 GIGPGS-------------ICTTRIVAGVGVPQITAICDVYEVCKNT-NICIIADGGIRFSGDVVKAIAAGAD 280 (404)
T ss_pred CCCCCc-------------CCcceeecCCCCChHHHHHHHHHHHhhc-CCeEEEeCCCCCHHHHHHHHHcCCC
Confidence 221110 0222222222223455554333 345 7898666655556666679999998
No 197
>PRK00915 2-isopropylmalate synthase; Validated
Probab=87.94 E-value=9.6 Score=39.85 Aligned_cols=147 Identities=24% Similarity=0.284 Sum_probs=88.7
Q ss_pred CHHHHHHHHHHHHHc-CCceEecc-CChhhHHHHH----hCCCCEE--EEcCCCCCC---------------HHHHHHHH
Q psy17999 47 SQEEYVMLQQCADQV-DIMFTASA-MDQVSFDFLL----SANVPFI--KIGSGDSNN---------------IPLIKYAA 103 (335)
Q Consensus 47 ~~e~~~~L~~~~~~~-Gi~f~stp-fd~~svd~l~----~l~v~~~--KIaS~d~~n---------------~~LL~~~a 103 (335)
++.++..+.+.++.. +..+.+-. -...+++... +.+++.+ -+++.++.. .+.++++.
T Consensus 51 s~~d~~~v~~i~~~~~~~~i~a~~r~~~~did~a~~a~~~~~~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak 130 (513)
T PRK00915 51 SPGDFEAVKRIARTVKNSTVCGLARAVKKDIDAAAEALKPAEAPRIHTFIATSPIHMEYKLKMSREEVLEMAVEAVKYAR 130 (513)
T ss_pred ChHHHHHHHHHHhhCCCCEEEEEccCCHHHHHHHHHHhhcCCCCEEEEEECCcHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 556666666655432 22222211 2355666665 4555543 445555431 25566666
Q ss_pred hcCCcEEEeC--C-CCCCHHHHHHHHHHHHh-cCCCCceeecccCCCCCCCCcccccCceEEeeecCCCCCCccCCCchH
Q psy17999 104 SKQKPLIIST--G-MLPSIEHVDNIYTTVKQ-YHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYPTPYHDINLNV 179 (335)
Q Consensus 104 ~~gkPvilSt--G-~~~tl~Ei~~Av~~i~~-g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~s~YP~~~~~~nL~~ 179 (335)
+.|.-|.++. + .+ +++.+.+.++.+.. |.. .|-||+.- .|=+|.+-. ..
T Consensus 131 ~~g~~v~f~~ed~~r~-d~~~l~~~~~~~~~~Ga~--~i~l~DTv----------------------G~~~P~~~~--~~ 183 (513)
T PRK00915 131 SYTDDVEFSAEDATRT-DLDFLCRVVEAAIDAGAT--TINIPDTV----------------------GYTTPEEFG--EL 183 (513)
T ss_pred HCCCeEEEEeCCCCCC-CHHHHHHHHHHHHHcCCC--EEEEccCC----------------------CCCCHHHHH--HH
Confidence 6788888875 3 34 77777777777666 543 45555542 233444333 34
Q ss_pred HHHHHHHCCC---CCeecCCCCC-C--hHHHHHHHHcCCcEEEeccCCC
Q psy17999 180 IHTLRSRYPD---IPIGYSGHEN-G--VHVCYAAVAMGAQIIEKHFTLD 222 (335)
Q Consensus 180 i~~L~~~fp~---~pVG~SdHt~-g--~~~~~aAvalGA~vIEkH~tld 222 (335)
|..|++.+|+ +|+|+=.|.. | .+-+++|+..||+.|+ -|+.
T Consensus 184 i~~l~~~~~~~~~v~l~~H~HND~GlAvANslaAv~aGa~~Vd--~Tv~ 230 (513)
T PRK00915 184 IKTLRERVPNIDKAIISVHCHNDLGLAVANSLAAVEAGARQVE--CTIN 230 (513)
T ss_pred HHHHHHhCCCcccceEEEEecCCCCHHHHHHHHHHHhCCCEEE--EEee
Confidence 7788888865 8999988864 4 5567999999999987 4554
No 198
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=87.90 E-value=23 Score=35.00 Aligned_cols=136 Identities=14% Similarity=0.123 Sum_probs=83.2
Q ss_pred hcCCHHHHHHHHHHHHHcCCceEeccCChhhHHHHHhCCCCEEEEcCC----------CCCCH-----------------
Q psy17999 44 LEFSQEEYVMLQQCADQVDIMFTASAMDQVSFDFLLSANVPFIKIGSG----------DSNNI----------------- 96 (335)
Q Consensus 44 ~el~~e~~~~L~~~~~~~Gi~f~stpfd~~svd~l~~l~v~~~KIaS~----------d~~n~----------------- 96 (335)
-+|+.+++.++.+-=. .++..+.+.|.|.+.|..+ ..+|.
T Consensus 130 ~~mt~eeI~~ii~~f~-------------~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~RtD~yGGslenR~Rf~~ 196 (337)
T PRK13523 130 VEMTKEQIKETVLAFK-------------QAAVRAKEAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGSPENRYRFLR 196 (337)
T ss_pred CcCCHHHHHHHHHHHH-------------HHHHHHHHcCCCEEEEccccchHHHHhcCCccCCcCCCCCCCHHHHHHHHH
Confidence 3689888887765322 4566777788888888655 22221
Q ss_pred HHHHHHHhc-CCcEEEeCCC------CCCHHHHHHHHHHHHhcCCCCceeecccCCCCCCCCcccccCceEEeeecCCCC
Q psy17999 97 PLIKYAASK-QKPLIISTGM------LPSIEHVDNIYTTVKQYHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYP 169 (335)
Q Consensus 97 ~LL~~~a~~-gkPvilStG~------~~tl~Ei~~Av~~i~~g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~s~YP 169 (335)
.+|+++-+. +.||.+.... +.+++|....++.+...+- ..+.+..|. .+|
T Consensus 197 eii~~ir~~~~~~v~vRis~~d~~~~G~~~~e~~~i~~~l~~~gv--D~i~vs~g~---------------------~~~ 253 (337)
T PRK13523 197 EIIDAVKEVWDGPLFVRISASDYHPGGLTVQDYVQYAKWMKEQGV--DLIDVSSGA---------------------VVP 253 (337)
T ss_pred HHHHHHHHhcCCCeEEEecccccCCCCCCHHHHHHHHHHHHHcCC--CEEEeCCCC---------------------CCC
Confidence 244454443 6788876543 2378888888888875222 333333332 111
Q ss_pred C--C-ccCCCchHHHHHHHHCCCCCeecCCCCCChHHHHHHHHcC-CcEEE
Q psy17999 170 T--P-YHDINLNVIHTLRSRYPDIPIGYSGHENGVHVCYAAVAMG-AQIIE 216 (335)
Q Consensus 170 ~--~-~~~~nL~~i~~L~~~fp~~pVG~SdHt~g~~~~~aAvalG-A~vIE 216 (335)
. + +...++.....+|+.. ++||+-.+--.....+..+++-| |++|-
T Consensus 254 ~~~~~~~~~~~~~~~~ik~~~-~ipVi~~G~i~~~~~a~~~l~~g~~D~V~ 303 (337)
T PRK13523 254 ARIDVYPGYQVPFAEHIREHA-NIATGAVGLITSGAQAEEILQNNRADLIF 303 (337)
T ss_pred CCCCCCccccHHHHHHHHhhc-CCcEEEeCCCCCHHHHHHHHHcCCCChHH
Confidence 1 1 1234667778899988 89997665544466677778777 77554
No 199
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=87.77 E-value=7.3 Score=36.15 Aligned_cols=79 Identities=11% Similarity=0.052 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHcCCceEeccCChhhHHHHHhCCCCEEEEcCCCCC-CHHHHHHHHhc--CCcEEEeCCCCCCHHHHHHH
Q psy17999 49 EEYVMLQQCADQVDIMFTASAMDQVSFDFLLSANVPFIKIGSGDSN-NIPLIKYAASK--QKPLIISTGMLPSIEHVDNI 125 (335)
Q Consensus 49 e~~~~L~~~~~~~Gi~f~stpfd~~svd~l~~l~v~~~KIaS~d~~-n~~LL~~~a~~--gkPvilStG~~~tl~Ei~~A 125 (335)
-.-.++.++|++.|+.++--++++..+..+.++|++++|+=-.+.. -...|+.+..- +.|++ -||+- +++. +
T Consensus 95 ~~~~~vi~~a~~~~i~~iPG~~TptEi~~a~~~Ga~~vKlFPa~~~gg~~~lk~l~~p~p~~~~~-ptGGV-~~~n---i 169 (212)
T PRK05718 95 GLTPPLLKAAQEGPIPLIPGVSTPSELMLGMELGLRTFKFFPAEASGGVKMLKALAGPFPDVRFC-PTGGI-SPAN---Y 169 (212)
T ss_pred CCCHHHHHHHHHcCCCEeCCCCCHHHHHHHHHCCCCEEEEccchhccCHHHHHHHhccCCCCeEE-EeCCC-CHHH---H
Confidence 3345899999999999999999999899999999999999766654 48888888763 56666 56655 5544 4
Q ss_pred HHHHHhc
Q psy17999 126 YTTVKQY 132 (335)
Q Consensus 126 v~~i~~g 132 (335)
-+++..|
T Consensus 170 ~~~l~ag 176 (212)
T PRK05718 170 RDYLALP 176 (212)
T ss_pred HHHHhCC
Confidence 4556544
No 200
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=87.66 E-value=14 Score=36.60 Aligned_cols=155 Identities=17% Similarity=0.255 Sum_probs=93.6
Q ss_pred hhcCCHHHHHHHHHHHHHcCCceEeccCChhhHHHHHhCCCCEEEEcCCCCCCHHHHHHHHhcCCcEE----EeCCCCCC
Q psy17999 43 HLEFSQEEYVMLQQCADQVDIMFTASAMDQVSFDFLLSANVPFIKIGSGDSNNIPLIKYAASKQKPLI----ISTGMLPS 118 (335)
Q Consensus 43 ~~el~~e~~~~L~~~~~~~Gi~f~stpfd~~svd~l~~l~v~~~KIaS~d~~n~~LL~~~a~~gkPvi----lStG~~~t 118 (335)
...|+.++...+.+...+.|+..+=--|.. .++-.-+.++..-...+..++++.+..+..- +--|.. +
T Consensus 19 ~~~f~~~~~~~i~~~L~~aGv~~IEvg~~~-------g~g~~s~~~g~~~~~~~e~i~~~~~~~~~~~~~~ll~pg~~-~ 90 (337)
T PRK08195 19 RHQYTLEQVRAIARALDAAGVPVIEVTHGD-------GLGGSSFNYGFGAHTDEEYIEAAAEVVKQAKIAALLLPGIG-T 90 (337)
T ss_pred CCccCHHHHHHHHHHHHHcCCCEEEeecCC-------CCCCccccCCCCCCCHHHHHHHHHHhCCCCEEEEEeccCcc-c
Confidence 356899999999888888887666443311 1111122234445567888888865433222 333666 8
Q ss_pred HHHHHHHHHHHHhcCCCCceeecccCCCCCCCCcccccCceEEeeecCCCCCCccCCCchHHHHHHHHCCCCCe-ec-C-
Q psy17999 119 IEHVDNIYTTVKQYHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYPTPYHDINLNVIHTLRSRYPDIPI-GY-S- 195 (335)
Q Consensus 119 l~Ei~~Av~~i~~g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~s~YP~~~~~~nL~~i~~L~~~fp~~pV-G~-S- 195 (335)
.++++.|.+. |-.. + ++ ..||+- .+.-...|...|+. +..| ++ .
T Consensus 91 ~~dl~~a~~~---gvd~----------------i-----ri-~~~~~e------~~~~~~~i~~ak~~--G~~v~~~l~~ 137 (337)
T PRK08195 91 VDDLKMAYDA---GVRV----------------V-----RV-ATHCTE------ADVSEQHIGLAREL--GMDTVGFLMM 137 (337)
T ss_pred HHHHHHHHHc---CCCE----------------E-----EE-EEecch------HHHHHHHHHHHHHC--CCeEEEEEEe
Confidence 8998887653 2110 0 22 246663 23345666666653 5655 32 1
Q ss_pred CCC--CC--hHHHHHHHHcCCcEEEeccCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q psy17999 196 GHE--NG--VHVCYAAVAMGAQIIEKHFTLDKSWKGSDHASSLTPPELKALVTGIRD 248 (335)
Q Consensus 196 dHt--~g--~~~~~aAvalGA~vIEkH~tld~~~~G~Dh~~Sl~p~el~~lv~~ir~ 248 (335)
.|. .. ...+..+..+||+.|- + .|..-.+.|+++.++++.+++
T Consensus 138 a~~~~~e~l~~~a~~~~~~Ga~~i~----i------~DT~G~~~P~~v~~~v~~l~~ 184 (337)
T PRK08195 138 SHMAPPEKLAEQAKLMESYGAQCVY----V------VDSAGALLPEDVRDRVRALRA 184 (337)
T ss_pred ccCCCHHHHHHHHHHHHhCCCCEEE----e------CCCCCCCCHHHHHHHHHHHHH
Confidence 233 33 2344557789999764 2 278889999999999999985
No 201
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=87.64 E-value=3.1 Score=37.82 Aligned_cols=52 Identities=13% Similarity=0.130 Sum_probs=39.7
Q ss_pred HHHHHhCCCCEEEEcCCC-------CCCHHHHHHHHh-cCCcEEEeCCCCCCHHHHHHHHH
Q psy17999 75 FDFLLSANVPFIKIGSGD-------SNNIPLIKYAAS-KQKPLIISTGMLPSIEHVDNIYT 127 (335)
Q Consensus 75 vd~l~~l~v~~~KIaS~d-------~~n~~LL~~~a~-~gkPvilStG~~~tl~Ei~~Av~ 127 (335)
+..+++.|++++-|.++. -.+++.++++.+ .+.||+.+-|.. +.+++.++++
T Consensus 144 ~~~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~i~~~~~ipvi~~Ggi~-~~~d~~~~l~ 203 (231)
T cd02801 144 AKALEDAGASALTVHGRTREQRYSGPADWDYIAEIKEAVSIPVIANGDIF-SLEDALRCLE 203 (231)
T ss_pred HHHHHHhCCCEEEECCCCHHHcCCCCCCHHHHHHHHhCCCCeEEEeCCCC-CHHHHHHHHH
Confidence 455677899999765542 257888888877 478999999998 9988887654
No 202
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=87.49 E-value=4.6 Score=41.83 Aligned_cols=80 Identities=16% Similarity=0.197 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHc-CCc-eEeccCChhhHHHHHhCCCCEEEEcCC--------CCC-----CHHHHHHHHh----cCCc
Q psy17999 48 QEEYVMLQQCADQV-DIM-FTASAMDQVSFDFLLSANVPFIKIGSG--------DSN-----NIPLIKYAAS----KQKP 108 (335)
Q Consensus 48 ~e~~~~L~~~~~~~-Gi~-f~stpfd~~svd~l~~l~v~~~KIaS~--------d~~-----n~~LL~~~a~----~gkP 108 (335)
...+..+....++. ++. ++-.+.+.+.+..|.+.|+++++++-+ .+. .+..|..+++ .+.|
T Consensus 254 ~~vl~~i~~i~~~~p~~~vi~g~v~t~e~a~~l~~aGad~i~vg~g~gs~~~~r~~~~~g~p~~~~~~~~~~~~~~~~~~ 333 (486)
T PRK05567 254 EGVLDRVREIKAKYPDVQIIAGNVATAEAARALIEAGADAVKVGIGPGSICTTRIVAGVGVPQITAIADAAEAAKKYGIP 333 (486)
T ss_pred hhHHHHHHHHHhhCCCCCEEEeccCCHHHHHHHHHcCCCEEEECCCCCccccceeecCCCcCHHHHHHHHHHHhccCCCe
Confidence 35666777777777 777 458999999999999999999999622 122 2345655543 5899
Q ss_pred EEEeCCCCCCHHHHHHHHHH
Q psy17999 109 LIISTGMLPSIEHVDNIYTT 128 (335)
Q Consensus 109 vilStG~~~tl~Ei~~Av~~ 128 (335)
||.+-|.. +..|+.+|+..
T Consensus 334 viadGGi~-~~~di~kAla~ 352 (486)
T PRK05567 334 VIADGGIR-YSGDIAKALAA 352 (486)
T ss_pred EEEcCCCC-CHHHHHHHHHh
Confidence 99999999 99999999764
No 203
>PRK09234 fbiC FO synthase; Reviewed
Probab=87.48 E-value=9.6 Score=42.39 Aligned_cols=180 Identities=22% Similarity=0.211 Sum_probs=103.1
Q ss_pred CCHHHHHHHHHHHHHc--CCceEe-c------------cCChhhHHHHHhCCCCEEEEcCCCCCC---------------
Q psy17999 46 FSQEEYVMLQQCADQV--DIMFTA-S------------AMDQVSFDFLLSANVPFIKIGSGDSNN--------------- 95 (335)
Q Consensus 46 l~~e~~~~L~~~~~~~--Gi~f~s-t------------pfd~~svd~l~~l~v~~~KIaS~d~~n--------------- 95 (335)
++.+.+.++.+..++. +|.+-+ | .-..+.+..|.+.|++.|=-++.++.+
T Consensus 587 ~~~~~y~~lir~IK~~~p~i~i~afsp~Ei~~~a~~~Gl~~~e~l~~LkeAGLds~pgt~aeil~d~vr~~i~p~k~~~~ 666 (843)
T PRK09234 587 LPGTGYADLVRAVKARVPSMHVHAFSPMEIVNGAARLGLSIREWLTALREAGLDTIPGTAAEILDDEVRWVLTKGKLPTA 666 (843)
T ss_pred cCHHHHHHHHHHHHHhCCCeeEEecChHHHHHHHHHcCCCHHHHHHHHHHhCcCccCCCchhhCCHHHHhhcCCCCCCHH
Confidence 5666777777777665 344421 1 223455677788888877544443333
Q ss_pred --HHHHHHHHhcCCcEEEeC---CCCCCHHHHHHHHHHHHh-cCCCCceeecccCCCCCCCCcccccCceEEeeecCCC-
Q psy17999 96 --IPLIKYAASKQKPLIIST---GMLPSIEHVDNIYTTVKQ-YHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAY- 168 (335)
Q Consensus 96 --~~LL~~~a~~gkPvilSt---G~~~tl~Ei~~Av~~i~~-g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~s~Y- 168 (335)
+..++.+-+.|.|+ -|| |+.-|.+++.+-+..++. .-. .|-.+.+ + ++-++|-.+.-
T Consensus 667 ~wle~i~~Ah~lGi~~-~stmm~G~~Et~edrv~hl~~LreLq~~--------tgGf~~f--I-----Pl~F~~~~tpl~ 730 (843)
T PRK09234 667 EWIEVVTTAHEVGLRS-SSTMMYGHVDTPRHWVAHLRVLRDIQDR--------TGGFTEF--V-----PLPFVHQNAPLY 730 (843)
T ss_pred HHHHHHHHHHHcCCCc-ccceEEcCCCCHHHHHHHHHHHHhcCcc--------cCCeeee--e-----eccccCCCCCcc
Confidence 45556666667772 222 233477777777777765 211 0000000 0 34445544421
Q ss_pred ------CCCccCCCchHHHHHHHHCCC----CCeecCCCCCChHHHHHHHHcCCc-----EEEeccCCCCCCCCCCCCCC
Q psy17999 169 ------PTPYHDINLNVIHTLRSRYPD----IPIGYSGHENGVHVCYAAVAMGAQ-----IIEKHFTLDKSWKGSDHASS 233 (335)
Q Consensus 169 ------P~~~~~~nL~~i~~L~~~fp~----~pVG~SdHt~g~~~~~aAvalGA~-----vIEkH~tld~~~~G~Dh~~S 233 (335)
|.+...-+|+.|...|=.+|+ +..++ -+.|......+...||+ ++|-+++- +-|..|...
T Consensus 731 l~~~~~~~~t~~e~Lr~iAvaRl~Lp~~i~~Iqa~w--v~lg~~~~q~~L~~GaNDlgGtl~ee~i~~---~aG~~~~~~ 805 (843)
T PRK09234 731 LAGAARPGPTHRENRAVHALARIMLHGRIDNIQTSW--VKLGVEGTRAMLRGGANDLGGTLMEETISR---MAGSEHGSA 805 (843)
T ss_pred cccCCCCCCCHHHHHHHHHHHHHhCCCCcccccchh--hhcCHHHHHHHHhcCCcCcccccccceeee---ccCCCCCCC
Confidence 222223456666655555552 22233 46677777788888887 77877664 345678778
Q ss_pred CCHHHHHHHHHHH
Q psy17999 234 LTPPELKALVTGI 246 (335)
Q Consensus 234 l~p~el~~lv~~i 246 (335)
+++++|..+++++
T Consensus 806 ~~~~~l~~~i~~a 818 (843)
T PRK09234 806 KTVAELEAIAEGA 818 (843)
T ss_pred CCHHHHHHHHHHc
Confidence 9999999988774
No 204
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=87.47 E-value=5.1 Score=37.49 Aligned_cols=53 Identities=19% Similarity=0.223 Sum_probs=42.1
Q ss_pred HHHHHhCCCCEEEEcC------CCCCCHHHHHHHHhc-CCcEEEeCCCCCCHHHHHHHHHH
Q psy17999 75 FDFLLSANVPFIKIGS------GDSNNIPLIKYAASK-QKPLIISTGMLPSIEHVDNIYTT 128 (335)
Q Consensus 75 vd~l~~l~v~~~KIaS------~d~~n~~LL~~~a~~-gkPvilStG~~~tl~Ei~~Av~~ 128 (335)
++.+.++|++.+-+.+ ..-.|+++++++.+. +.|||.+-|.+ +.+++.++.+.
T Consensus 159 ~~~~~~~g~~~ii~~~i~~~g~~~g~d~~~i~~~~~~~~ipvia~GGv~-s~~d~~~~~~~ 218 (253)
T PRK02083 159 AKEVEELGAGEILLTSMDRDGTKNGYDLELTRAVSDAVNVPVIASGGAG-NLEHFVEAFTE 218 (253)
T ss_pred HHHHHHcCCCEEEEcCCcCCCCCCCcCHHHHHHHHhhCCCCEEEECCCC-CHHHHHHHHHh
Confidence 4666778999877733 345689999999875 89999999999 99999987543
No 205
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=87.47 E-value=26 Score=33.06 Aligned_cols=63 Identities=14% Similarity=0.181 Sum_probs=49.3
Q ss_pred HHHHHHHHHHc-CCceEeccCChhhHHHHHhCCCCEEEEcCCCCCCHHHHHHHHhcCCcEEEeC
Q psy17999 51 YVMLQQCADQV-DIMFTASAMDQVSFDFLLSANVPFIKIGSGDSNNIPLIKYAASKQKPLIIST 113 (335)
Q Consensus 51 ~~~L~~~~~~~-Gi~f~stpfd~~svd~l~~l~v~~~KIaS~d~~n~~LL~~~a~~gkPvilSt 113 (335)
+.++.+..++. ++.+...-++++-++...+.+++++==-|+.-.+..+++-+++.|.|+|+..
T Consensus 64 l~~~v~~l~~~~~~piSIDT~~~~v~~aaL~~g~~iINdis~~~~~~~~~~l~~~~~~~vV~m~ 127 (258)
T cd00423 64 VIPVLRALAGEPDVPISVDTFNAEVAEAALKAGADIINDVSGGRGDPEMAPLAAEYGAPVVLMH 127 (258)
T ss_pred HHHHHHHHHhcCCCeEEEeCCcHHHHHHHHHhCCCEEEeCCCCCCChHHHHHHHHcCCCEEEEC
Confidence 44444444444 9999999999999999999999987777776444678888888999999974
No 206
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=87.26 E-value=13 Score=36.73 Aligned_cols=145 Identities=11% Similarity=0.112 Sum_probs=85.9
Q ss_pred CCHHHHHHHHHHHHHcCCceEecc----CChhhHHHHHhCC--CCEEEEcCCCCCCHHHHHHHHh----cCCcEEEeCCC
Q psy17999 46 FSQEEYVMLQQCADQVDIMFTASA----MDQVSFDFLLSAN--VPFIKIGSGDSNNIPLIKYAAS----KQKPLIISTGM 115 (335)
Q Consensus 46 l~~e~~~~L~~~~~~~Gi~f~stp----fd~~svd~l~~l~--v~~~KIaS~d~~n~~LL~~~a~----~gkPvilStG~ 115 (335)
++.|+|....+..+..++.+..++ .|.+-++.|.+.+ +|++-|-+.+=.+...++.+.. +..|.++.-+.
T Consensus 66 ~~~E~~~sfvrk~k~~~L~v~~SvG~t~e~~~r~~~lv~a~~~~d~i~~D~ahg~s~~~~~~i~~i~~~~p~~~vi~GnV 145 (321)
T TIGR01306 66 FDEESRIPFIKDMQERGLFASISVGVKACEYEFVTQLAEEALTPEYITIDIAHGHSNSVINMIKHIKTHLPDSFVIAGNV 145 (321)
T ss_pred CCHHHHHHHHHhccccccEEEEEcCCCHHHHHHHHHHHhcCCCCCEEEEeCccCchHHHHHHHHHHHHhCCCCEEEEecC
Confidence 577877776666666566555444 4555567777767 7999999988888877655443 35677777666
Q ss_pred CCCHHHHHHHHHHHHhcCCCCceeecc---cCCCCCCCCcccccCceEEeeecCCCCCCccCCCchHHHHHHHHCCCCCe
Q psy17999 116 LPSIEHVDNIYTTVKQYHSNLSILHCV---SAYPTPYPTVKQYHSNLSILHCVSAYPTPYHDINLNVIHTLRSRYPDIPI 192 (335)
Q Consensus 116 ~~tl~Ei~~Av~~i~~g~~~~~~~~c~---~g~~~~~~~~~~~~~~l~llHC~s~YP~~~~~~nL~~i~~L~~~fp~~pV 192 (335)
. |.+....+++ .|.. .+... -++++- ++ .+-..+| ...|.+|...++.+ ++||
T Consensus 146 ~-t~e~a~~l~~---aGad---~I~V~~G~G~~~~t---------r~---~~g~g~~----~~~l~ai~ev~~a~-~~pV 201 (321)
T TIGR01306 146 G-TPEAVRELEN---AGAD---ATKVGIGPGKVCIT---------KI---KTGFGTG----GWQLAALRWCAKAA-RKPI 201 (321)
T ss_pred C-CHHHHHHHHH---cCcC---EEEECCCCCccccc---------ee---eeccCCC----chHHHHHHHHHHhc-CCeE
Confidence 6 7777666544 3433 11111 011100 11 1111222 22467888888887 8888
Q ss_pred -ecCCCCCChHHHHHHHHcCCcEE
Q psy17999 193 -GYSGHENGVHVCYAAVAMGAQII 215 (335)
Q Consensus 193 -G~SdHt~g~~~~~aAvalGA~vI 215 (335)
+..+=..|..+. -|+|+||+.+
T Consensus 202 IadGGIr~~~Di~-KALa~GAd~V 224 (321)
T TIGR01306 202 IADGGIRTHGDIA-KSIRFGASMV 224 (321)
T ss_pred EEECCcCcHHHHH-HHHHcCCCEE
Confidence 444444445555 4788899843
No 207
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=87.25 E-value=6.2 Score=37.68 Aligned_cols=83 Identities=13% Similarity=0.197 Sum_probs=61.4
Q ss_pred cCCHHHHHHHHHHHHHcCCceE--eccCC-hhhHHHHHhCCCCEEEE-cC---CCC-----CC-HHHHHHHHh-cCCcEE
Q psy17999 45 EFSQEEYVMLQQCADQVDIMFT--ASAMD-QVSFDFLLSANVPFIKI-GS---GDS-----NN-IPLIKYAAS-KQKPLI 110 (335)
Q Consensus 45 el~~e~~~~L~~~~~~~Gi~f~--stpfd-~~svd~l~~l~v~~~KI-aS---~d~-----~n-~~LL~~~a~-~gkPvi 110 (335)
.|+.|+..++.+.|+++|+..+ ++|-+ .+-+..+.++...|+=+ +. +.. .+ ..+++.+.+ +++||+
T Consensus 125 DLp~ee~~~~~~~~~~~gl~~I~lvap~t~~eri~~i~~~s~gfIY~vs~~GvTG~~~~~~~~~~~~i~~vk~~~~~pv~ 204 (258)
T PRK13111 125 DLPPEEAEELRAAAKKHGLDLIFLVAPTTTDERLKKIASHASGFVYYVSRAGVTGARSADAADLAELVARLKAHTDLPVA 204 (258)
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCCcEEEEeCCCCCCcccCCCccHHHHHHHHHhcCCCcEE
Confidence 4889999999999999998765 57766 45577777776666532 22 111 22 237777776 489999
Q ss_pred EeCCCCCCHHHHHHHHHH
Q psy17999 111 ISTGMLPSIEHVDNIYTT 128 (335)
Q Consensus 111 lStG~~~tl~Ei~~Av~~ 128 (335)
+..|-+ +.+++.++.+.
T Consensus 205 vGfGI~-~~e~v~~~~~~ 221 (258)
T PRK13111 205 VGFGIS-TPEQAAAIAAV 221 (258)
T ss_pred EEcccC-CHHHHHHHHHh
Confidence 999999 99999998764
No 208
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=87.18 E-value=22 Score=34.01 Aligned_cols=151 Identities=15% Similarity=0.229 Sum_probs=94.2
Q ss_pred hcCCHHHHHHHHHHHHHc---CCceEeccCC--hh-h---HHHHHhCCCCEEEEcCCCCCC---HHHHHH---HHh-cCC
Q psy17999 44 LEFSQEEYVMLQQCADQV---DIMFTASAMD--QV-S---FDFLLSANVPFIKIGSGDSNN---IPLIKY---AAS-KQK 107 (335)
Q Consensus 44 ~el~~e~~~~L~~~~~~~---Gi~f~stpfd--~~-s---vd~l~~l~v~~~KIaS~d~~n---~~LL~~---~a~-~gk 107 (335)
..|+.++...+.+.+.+. .+.+++.+-+ .+ + ...++++|+|.+-+...-... -.++++ +++ ++.
T Consensus 52 ~~Ls~eEr~~~~~~~~~~~~~~~~viagvg~~~t~~ai~~a~~a~~~Gad~v~v~~P~y~~~~~~~l~~~f~~va~a~~l 131 (293)
T PRK04147 52 FLLSTEEKKQVLEIVAEEAKGKVKLIAQVGSVNTAEAQELAKYATELGYDAISAVTPFYYPFSFEEICDYYREIIDSADN 131 (293)
T ss_pred ccCCHHHHHHHHHHHHHHhCCCCCEEecCCCCCHHHHHHHHHHHHHcCCCEEEEeCCcCCCCCHHHHHHHHHHHHHhCCC
Confidence 569999999888766542 3666666633 22 2 355667899988777664433 344444 454 689
Q ss_pred cEEEe-----CCCCCCHHHHHHHHHHHHhcCCCCceeecccCCCCCCCCcccccCceEEeeecCCCCCCccCCCchHHHH
Q psy17999 108 PLIIS-----TGMLPSIEHVDNIYTTVKQYHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYPTPYHDINLNVIHT 182 (335)
Q Consensus 108 PvilS-----tG~~~tl~Ei~~Av~~i~~g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~s~YP~~~~~~nL~~i~~ 182 (335)
||++= ||..++.+.+.+.++ .+ +++-+-+.| -|+..+..
T Consensus 132 Pv~iYn~P~~tg~~l~~~~l~~L~~-----~p-----------------------nvvgiK~s~--------~d~~~~~~ 175 (293)
T PRK04147 132 PMIVYNIPALTGVNLSLDQFNELFT-----LP-----------------------KVIGVKQTA--------GDLYQLER 175 (293)
T ss_pred CEEEEeCchhhccCCCHHHHHHHhc-----CC-----------------------CEEEEEeCC--------CCHHHHHH
Confidence 99997 787778887776543 22 566665543 46677777
Q ss_pred HHHHCCCCCeecCCCCCChHHHHHHHHcCCc-EEEeccCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q psy17999 183 LRSRYPDIPIGYSGHENGVHVCYAAVAMGAQ-IIEKHFTLDKSWKGSDHASSLTPPELKALVTGIR 247 (335)
Q Consensus 183 L~~~fp~~pVG~SdHt~g~~~~~aAvalGA~-vIEkH~tld~~~~G~Dh~~Sl~p~el~~lv~~ir 247 (335)
+++..++..| |+++. .....++++|++ +|= ....+-|+++.+|.+.++
T Consensus 176 ~~~~~~~~~v-~~G~d---~~~~~~l~~G~~G~is-------------~~~n~~p~~~~~l~~~~~ 224 (293)
T PRK04147 176 IRKAFPDKLI-YNGFD---EMFASGLLAGADGAIG-------------STYNVNGWRARQIFEAAK 224 (293)
T ss_pred HHHhCCCCEE-EEeeh---HHHHHHHHcCCCEEEe-------------chhhhCHHHHHHHHHHHH
Confidence 7777765544 55443 233457789997 331 123455777777776543
No 209
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=87.10 E-value=9.1 Score=37.68 Aligned_cols=127 Identities=16% Similarity=0.201 Sum_probs=74.8
Q ss_pred HHHHHHHHHHcCCceEeccCChhhHHHHHhCCCCEEEEcCCCCCCHHHHHHHHhcCCcEEEeCCCC----CCHHHHHHHH
Q psy17999 51 YVMLQQCADQVDIMFTASAMDQVSFDFLLSANVPFIKIGSGDSNNIPLIKYAASKQKPLIISTGML----PSIEHVDNIY 126 (335)
Q Consensus 51 ~~~L~~~~~~~Gi~f~stpfd~~svd~l~~l~v~~~KIaS~d~~n~~LL~~~a~~gkPvilStG~~----~tl~Ei~~Av 126 (335)
-+.|.+.|++.|+......... +++=+ .....+..+++. .+++|+|.+-|.. .+.+++..++
T Consensus 72 n~~La~~a~~~g~~~~~Gs~~~------------~~~~~-~~~~~~~~vr~~-~~~~p~i~nl~~~~~~~~~~~~~~~~i 137 (333)
T TIGR02151 72 NRNLARAARELGIPMGVGSQRA------------ALKDP-ETADTFEVVREE-APNGPLIANIGAPQLVEGGPEEAQEAI 137 (333)
T ss_pred HHHHHHHHHHcCCCeEEcCchh------------hccCh-hhHhHHHHHHHh-CCCCcEEeecCchhhccccHHHHHHHH
Confidence 5677777777777776543210 00000 011222334444 4689999998864 1245577777
Q ss_pred HHHHhcCCCCceeecccCCCCCCCCcccccCceEEeeec--CCCCCCccCCCc----hHHHHHHHHCCCCCeec--CCCC
Q psy17999 127 TTVKQYHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCV--SAYPTPYHDINL----NVIHTLRSRYPDIPIGY--SGHE 198 (335)
Q Consensus 127 ~~i~~g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~--s~YP~~~~~~nL----~~i~~L~~~fp~~pVG~--SdHt 198 (335)
+.+.. +-.-+|+. ..-..|..+-+. ..|..+++.. ++||+. ++..
T Consensus 138 ~~i~a--------------------------dal~i~ln~~q~~~~p~g~~~f~~~le~i~~i~~~~-~vPVivK~~g~g 190 (333)
T TIGR02151 138 DMIEA--------------------------DALAIHLNVLQELVQPEGDRNFKGWLEKIAEICSQL-SVPVIVKEVGFG 190 (333)
T ss_pred HHhcC--------------------------CCEEEcCcccccccCCCCCcCHHHHHHHHHHHHHhc-CCCEEEEecCCC
Confidence 77642 22334653 222223322233 6788999988 899975 4444
Q ss_pred CChHHHHHHHHcCCcEEEec
Q psy17999 199 NGVHVCYAAVAMGAQIIEKH 218 (335)
Q Consensus 199 ~g~~~~~aAvalGA~vIEkH 218 (335)
.....+......|++.|+-|
T Consensus 191 ~~~~~a~~L~~aGvd~I~Vs 210 (333)
T TIGR02151 191 ISKEVAKLLADAGVSAIDVA 210 (333)
T ss_pred CCHHHHHHHHHcCCCEEEEC
Confidence 55677778889999999865
No 210
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=87.10 E-value=4.1 Score=40.35 Aligned_cols=118 Identities=17% Similarity=0.280 Sum_probs=70.5
Q ss_pred CCCCcEEEeec---ccccccccccccCCCCCC--CCCCcccHHHHHHhhcCCHHHHHHHHHHHH-----HcCCceEeccC
Q psy17999 1 ECGADCVKFQK---SCLSTKFTQSALDRPYLS--PHAWANTYGQHKQHLEFSQEEYVMLQQCAD-----QVDIMFTASAM 70 (335)
Q Consensus 1 ~aGaDaVKFQ~---~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~el~~e~~~~L~~~~~-----~~Gi~f~stpf 70 (335)
+||+|.|-..- |-.+.++ .|... ...||.+ +.++..|..|=+..+++.+- ..-|.+=.++.
T Consensus 155 ~aGfDgVeih~ahGyLl~qFl------sp~~N~R~D~yGGs---lenR~r~~~eii~~vr~~vg~~~~~~~~v~~R~s~~ 225 (353)
T cd04735 155 EAGFDGVEIHGANGYLIQQFF------SPHSNRRTDEWGGS---LENRMRFPLAVVKAVQEVIDKHADKDFILGYRFSPE 225 (353)
T ss_pred HcCCCEEEEccccchHHHHhc------CCccCCCCcccCCc---HHHHHHHHHHHHHHHHHHhccccCCCceEEEEECcc
Confidence 47999987764 2121122 22211 1124543 34667788888888888774 22222223333
Q ss_pred C--------hhh---HHHHHhCCCCEEEEcCCCCC---------CHHHHHHHHhc---CCcEEEeCCCCCCHHHHHHHHH
Q psy17999 71 D--------QVS---FDFLLSANVPFIKIGSGDSN---------NIPLIKYAASK---QKPLIISTGMLPSIEHVDNIYT 127 (335)
Q Consensus 71 d--------~~s---vd~l~~l~v~~~KIaS~d~~---------n~~LL~~~a~~---gkPvilStG~~~tl~Ei~~Av~ 127 (335)
+ ++. +..|++.|+|++=|..+..+ ++++++++.+. ++|||..-|.. |.++.+++++
T Consensus 226 ~~~~~g~~~ee~~~i~~~L~~~GvD~I~Vs~g~~~~~~~~~~~~~~~~~~~ik~~~~~~iPVi~~Ggi~-t~e~ae~~l~ 304 (353)
T cd04735 226 EPEEPGIRMEDTLALVDKLADKGLDYLHISLWDFDRKSRRGRDDNQTIMELVKERIAGRLPLIAVGSIN-TPDDALEALE 304 (353)
T ss_pred cccCCCCCHHHHHHHHHHHHHcCCCEEEeccCccccccccCCcchHHHHHHHHHHhCCCCCEEEECCCC-CHHHHHHHHH
Confidence 2 223 45667789999998764322 35666666553 78999988888 9999888766
Q ss_pred H
Q psy17999 128 T 128 (335)
Q Consensus 128 ~ 128 (335)
.
T Consensus 305 ~ 305 (353)
T cd04735 305 T 305 (353)
T ss_pred c
Confidence 3
No 211
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=86.94 E-value=5.6 Score=37.66 Aligned_cols=43 Identities=28% Similarity=0.417 Sum_probs=31.3
Q ss_pred CCCChH--HHHHHHHcCCcEEEeccCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q psy17999 197 HENGVH--VCYAAVAMGAQIIEKHFTLDKSWKGSDHASSLTPPELKALVTGIRDI 249 (335)
Q Consensus 197 Ht~g~~--~~~aAvalGA~vIEkH~tld~~~~G~Dh~~Sl~p~el~~lv~~ir~~ 249 (335)
|+.... ++..+..+|++.|- +- |..-.++|+++..+++.+++.
T Consensus 140 ~~~~~~~~~~~~~~~~G~~~i~----l~------DT~G~~~P~~v~~lv~~l~~~ 184 (268)
T cd07940 140 TDLDFLIEVVEAAIEAGATTIN----IP------DTVGYLTPEEFGELIKKLKEN 184 (268)
T ss_pred CCHHHHHHHHHHHHHcCCCEEE----EC------CCCCCCCHHHHHHHHHHHHHh
Confidence 555533 34456788998653 32 888889999999999999863
No 212
>KOG4201|consensus
Probab=86.92 E-value=2.8 Score=39.50 Aligned_cols=76 Identities=11% Similarity=0.177 Sum_probs=60.7
Q ss_pred cCCHHHHHHHHHHHHHcCCceEeccCChhhHHHHHhCCCCEEEEcCCCCCCH-------H-HHHHHHhcCCcEEE--eCC
Q psy17999 45 EFSQEEYVMLQQCADQVDIMFTASAMDQVSFDFLLSANVPFIKIGSGDSNNI-------P-LIKYAASKQKPLII--STG 114 (335)
Q Consensus 45 el~~e~~~~L~~~~~~~Gi~f~stpfd~~svd~l~~l~v~~~KIaS~d~~n~-------~-LL~~~a~~gkPvil--StG 114 (335)
-|++.++..|..+|+.+|+.-+..+.|++-++...++|+..+=|--+++-.+ . |++-+ .+-||| -+|
T Consensus 169 mLs~~~lk~l~k~~K~L~me~LVEVn~~eEm~raleiGakvvGvNNRnL~sFeVDlstTskL~E~i---~kDvilva~SG 245 (289)
T KOG4201|consen 169 MLSDLLLKELYKISKDLGMEPLVEVNDEEEMQRALEIGAKVVGVNNRNLHSFEVDLSTTSKLLEGI---PKDVILVALSG 245 (289)
T ss_pred HcChHHHHHHHHHHHHcCCcceeeeccHHHHHHHHHhCcEEEeecCCccceeeechhhHHHHHhhC---ccceEEEeccC
Confidence 3899999999999999999999999999999999999999998887765332 2 33332 244444 489
Q ss_pred CCCCHHHHHH
Q psy17999 115 MLPSIEHVDN 124 (335)
Q Consensus 115 ~~~tl~Ei~~ 124 (335)
.+ |.+++..
T Consensus 246 i~-tpdDia~ 254 (289)
T KOG4201|consen 246 IF-TPDDIAK 254 (289)
T ss_pred CC-CHHHHHH
Confidence 99 9999875
No 213
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=86.62 E-value=11 Score=33.53 Aligned_cols=77 Identities=9% Similarity=-0.021 Sum_probs=56.3
Q ss_pred CHHHHHHHHHHHHHcCCceE---eccCChhhHHHHHhCCCCEEEEc-CC------CCCCHHHHHHHHh-cCCcEEEeCCC
Q psy17999 47 SQEEYVMLQQCADQVDIMFT---ASAMDQVSFDFLLSANVPFIKIG-SG------DSNNIPLIKYAAS-KQKPLIISTGM 115 (335)
Q Consensus 47 ~~e~~~~L~~~~~~~Gi~f~---stpfd~~svd~l~~l~v~~~KIa-S~------d~~n~~LL~~~a~-~gkPvilStG~ 115 (335)
+.+...++.++|++.|+.++ .+|.++..+..+.+.++|++++. +. .......++++.+ .+.|+.+.=|.
T Consensus 88 ~~~~~~~~i~~~~~~g~~~~v~~~~~~t~~e~~~~~~~~~d~v~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~GGI 167 (202)
T cd04726 88 PLSTIKKAVKAAKKYGKEVQVDLIGVEDPEKRAKLLKLGVDIVILHRGIDAQAAGGWWPEDDLKKVKKLLGVKVAVAGGI 167 (202)
T ss_pred CHHHHHHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHCCCCEEEEcCcccccccCCCCCHHHHHHHHhhcCCCEEEECCc
Confidence 34567889999999999998 58889888877788899999993 32 2344677777766 56777777665
Q ss_pred CCCHHHHHHH
Q psy17999 116 LPSIEHVDNI 125 (335)
Q Consensus 116 ~~tl~Ei~~A 125 (335)
+ .+.+.++
T Consensus 168 ~--~~~i~~~ 175 (202)
T cd04726 168 T--PDTLPEF 175 (202)
T ss_pred C--HHHHHHH
Confidence 4 5555544
No 214
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=86.58 E-value=8.6 Score=40.44 Aligned_cols=170 Identities=14% Similarity=0.187 Sum_probs=90.7
Q ss_pred hcCCHHHHHHHHHHHHHcCCceEec--cC-ChhhHHHHH---hCCCCEEEEcCCC------C--CCHHHHHHHHhcCCc-
Q psy17999 44 LEFSQEEYVMLQQCADQVDIMFTAS--AM-DQVSFDFLL---SANVPFIKIGSGD------S--NNIPLIKYAASKQKP- 108 (335)
Q Consensus 44 ~el~~e~~~~L~~~~~~~Gi~f~st--pf-d~~svd~l~---~l~v~~~KIaS~d------~--~n~~LL~~~a~~gkP- 108 (335)
..|+.++-.++.+...+.|+..+=- |+ ++...+++. +.+.+--+|.+.- + .|-.-++.+...+.|
T Consensus 18 ~~~s~eeKl~Ia~~L~~~GVd~IE~G~p~~s~~d~~~v~~i~~~~~~~~~i~~~~r~~r~~~~~~~d~~~ea~~~~~~~~ 97 (526)
T TIGR00977 18 VSFSLEDKIRIAERLDDLGIHYIEGGWPGANPKDVQFFWQLKEMNFKNAKIVAFCSTRRPHKKVEEDKMLQALIKAETPV 97 (526)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEeCCCCChHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchHHHHHHHhcCCCCE
Confidence 3578888888888888888887743 22 344444433 4344333333321 1 334556777777777
Q ss_pred --EEEeC---------CCCCCHHHHHH----HHHHHHhcCCCCcee-ecc---cCCCCCCCCcccc--------cCceEE
Q psy17999 109 --LIIST---------GMLPSIEHVDN----IYTTVKQYHSNLSIL-HCV---SAYPTPYPTVKQY--------HSNLSI 161 (335)
Q Consensus 109 --vilSt---------G~~~tl~Ei~~----Av~~i~~g~~~~~~~-~c~---~g~~~~~~~~~~~--------~~~l~l 161 (335)
+.+++ ++ +.+|+.+ ++++.++... .+. .++ -|+++...-+-+. -+.+.|
T Consensus 98 v~i~~~~Sd~h~~~~l~~--s~ee~l~~~~~~v~~ak~~g~--~V~~~~e~f~D~~r~~~~~l~~~~~~a~~aGad~i~i 173 (526)
T TIGR00977 98 VTIFGKSWDLHVLEALQT--TLEENLAMIYDTVAYLKRQGD--EVIYDAEHFFDGYKANPEYALATLATAQQAGADWLVL 173 (526)
T ss_pred EEEEeCCCHHHHHHHhCC--CHHHHHHHHHHHHHHHHHcCC--eEEEEeeeeeecccCCHHHHHHHHHHHHhCCCCeEEE
Confidence 22333 33 3444433 3444444222 222 222 2333221111000 012222
Q ss_pred eeecCCCCCCccCCCchHHHHHHHHCCCCCeecCCCCC-C--hHHHHHHHHcCCcEEEeccCCC
Q psy17999 162 LHCVSAYPTPYHDINLNVIHTLRSRYPDIPIGYSGHEN-G--VHVCYAAVAMGAQIIEKHFTLD 222 (335)
Q Consensus 162 lHC~s~YP~~~~~~nL~~i~~L~~~fp~~pVG~SdHt~-g--~~~~~aAvalGA~vIEkH~tld 222 (335)
-=|..|-+|.+-.++ |..|++.+|..+|++=.|-. | .+-+++|+..||+.|| .|+.
T Consensus 174 -~DTvG~~~P~~v~~l--i~~l~~~~~~~~i~vH~HND~GlAvANslaAv~AGA~~Vd--~Tin 232 (526)
T TIGR00977 174 -CDTNGGTLPHEISEI--TTKVKRSLKQPQLGIHAHNDSGTAVANSLLAVEAGATMVQ--GTIN 232 (526)
T ss_pred -ecCCCCcCHHHHHHH--HHHHHHhCCCCEEEEEECCCCChHHHHHHHHHHhCCCEEE--Eecc
Confidence 233455566544444 78889999654588877754 4 5557999999999998 5554
No 215
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=86.37 E-value=24 Score=31.49 Aligned_cols=126 Identities=18% Similarity=0.196 Sum_probs=69.7
Q ss_pred hHHHHHhCCCCEEEEcCCCCCCHHHHHHHH-------hcCCcEEEeCCCCCCHHHHHHHHHHHHhcCCCCceeecccCCC
Q psy17999 74 SFDFLLSANVPFIKIGSGDSNNIPLIKYAA-------SKQKPLIISTGMLPSIEHVDNIYTTVKQYHSNLSILHCVSAYP 146 (335)
Q Consensus 74 svd~l~~l~v~~~KIaS~d~~n~~LL~~~a-------~~gkPvilStG~~~tl~Ei~~Av~~i~~g~~~~~~~~c~~g~~ 146 (335)
.++.+.+.|++++.+.-.+++..++++.+. ..|.|+++. +.++.+.+. |.
T Consensus 26 ~~~~~~~~gv~~v~lr~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------~~~~~a~~~---ga------------- 82 (212)
T PRK00043 26 VVEAALEGGVTLVQLREKGLDTRERLELARALKELCRRYGVPLIVN-------DRVDLALAV---GA------------- 82 (212)
T ss_pred HHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCeEEEe-------ChHHHHHHc---CC-------------
Confidence 455666678888888877777555544322 246788774 233333321 22
Q ss_pred CCCCCcccccCceEEeeecCCCCCCccCCCchHHHHHHHHCCCCCeecCCCCCChHHHHHHHHcCCcEEEeccCCCCCCC
Q psy17999 147 TPYPTVKQYHSNLSILHCVSAYPTPYHDINLNVIHTLRSRYPDIPIGYSGHENGVHVCYAAVAMGAQIIEKHFTLDKSWK 226 (335)
Q Consensus 147 ~~~~~~~~~~~~l~llHC~s~YP~~~~~~nL~~i~~L~~~fp~~pVG~SdHt~g~~~~~aAvalGA~vIEkH~tld~~~~ 226 (335)
+. +|+.+. +.....+..++. . +..+|.|-|| ..-...|...||+.|=.+. +.....
T Consensus 83 -----------d~--vh~~~~------~~~~~~~~~~~~-~-~~~~g~~~~t--~~e~~~a~~~gaD~v~~~~-~~~~~~ 138 (212)
T PRK00043 83 -----------DG--VHLGQD------DLPVADARALLG-P-DAIIGLSTHT--LEEAAAALAAGADYVGVGP-IFPTPT 138 (212)
T ss_pred -----------CE--EecCcc------cCCHHHHHHHcC-C-CCEEEEeCCC--HHHHHHHhHcCCCEEEECC-ccCCCC
Confidence 22 444322 111223333332 2 6778999995 4456778899999886552 222223
Q ss_pred CCCCCCCCCHHHHHHHHHHH
Q psy17999 227 GSDHASSLTPPELKALVTGI 246 (335)
Q Consensus 227 G~Dh~~Sl~p~el~~lv~~i 246 (335)
+++....+.++.++++.+.+
T Consensus 139 ~~~~~~~~g~~~~~~~~~~~ 158 (212)
T PRK00043 139 KKDAKAPQGLEGLREIRAAV 158 (212)
T ss_pred CCCCCCCCCHHHHHHHHHhc
Confidence 33444445567777766554
No 216
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=86.27 E-value=8.6 Score=36.69 Aligned_cols=89 Identities=15% Similarity=0.176 Sum_probs=58.9
Q ss_pred cCCcEEEeCCCCCCHHHHHHHHHHHHhcCCCCceeecccCCCCCCCCcccccCceEEeeecCCCCCC----c-cCCC--c
Q psy17999 105 KQKPLIISTGMLPSIEHVDNIYTTVKQYHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYPTP----Y-HDIN--L 177 (335)
Q Consensus 105 ~gkPvilStG~~~tl~Ei~~Av~~i~~g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~s~YP~~----~-~~~n--L 177 (335)
.+.|+++|-+.. +.+++..+++.+..... +.+=+|+.+..... + .+.+ .
T Consensus 88 ~~~p~ivsi~g~-~~~~~~~~a~~~~~~G~-----------------------d~iElN~~cP~~~~~g~~~~~~~~~~~ 143 (296)
T cd04740 88 FGTPVIASIAGS-TVEEFVEVAEKLADAGA-----------------------DAIELNISCPNVKGGGMAFGTDPEAVA 143 (296)
T ss_pred CCCcEEEEEecC-CHHHHHHHHHHHHHcCC-----------------------CEEEEECCCCCCCCCcccccCCHHHHH
Confidence 478999999999 99999999999877322 55556655433211 0 1111 2
Q ss_pred hHHHHHHHHCCCCCeec--C-CCCCChHHHHHHHHcCCcEEEec
Q psy17999 178 NVIHTLRSRYPDIPIGY--S-GHENGVHVCYAAVAMGAQIIEKH 218 (335)
Q Consensus 178 ~~i~~L~~~fp~~pVG~--S-dHt~g~~~~~aAvalGA~vIEkH 218 (335)
..+..+|+.. ++||+. + +.+.-...+.++...||+.|--+
T Consensus 144 eiv~~vr~~~-~~Pv~vKl~~~~~~~~~~a~~~~~~G~d~i~~~ 186 (296)
T cd04740 144 EIVKAVKKAT-DVPVIVKLTPNVTDIVEIARAAEEAGADGLTLI 186 (296)
T ss_pred HHHHHHHhcc-CCCEEEEeCCCchhHHHHHHHHHHcCCCEEEEE
Confidence 4677888877 788863 3 33333455667889999976543
No 217
>PRK11579 putative oxidoreductase; Provisional
Probab=86.26 E-value=2.8 Score=40.88 Aligned_cols=57 Identities=16% Similarity=0.275 Sum_probs=50.8
Q ss_pred HHHHhCCCCEEEEcCCCCCCHHHHHHHHhcCCcEEEeCCCCCCHHHHHHHHHHHHhc
Q psy17999 76 DFLLSANVPFIKIGSGDSNNIPLIKYAASKQKPLIISTGMLPSIEHVDNIYTTVKQY 132 (335)
Q Consensus 76 d~l~~l~v~~~KIaS~d~~n~~LL~~~a~~gkPvilStG~~~tl~Ei~~Av~~i~~g 132 (335)
+++.+-++|++-|++..-.+.++..++.+.||+|++...++.|++|.++.++..++.
T Consensus 58 ell~~~~vD~V~I~tp~~~H~~~~~~al~aGkhVl~EKPla~t~~ea~~l~~~a~~~ 114 (346)
T PRK11579 58 HLFNDPNIDLIVIPTPNDTHFPLAKAALEAGKHVVVDKPFTVTLSQARELDALAKSA 114 (346)
T ss_pred HHhcCCCCCEEEEcCCcHHHHHHHHHHHHCCCeEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 445556799999999999999999999999999999999999999999988877763
No 218
>PRK12999 pyruvate carboxylase; Reviewed
Probab=86.07 E-value=6 Score=45.38 Aligned_cols=114 Identities=18% Similarity=0.230 Sum_probs=72.0
Q ss_pred HHHHHhCCCCEEEEcCCCCCCHHHHHHH----HhcCCcE---EEeCC--------CCCCHHHHHHHHHHHHh-cCCCCce
Q psy17999 75 FDFLLSANVPFIKIGSGDSNNIPLIKYA----ASKQKPL---IISTG--------MLPSIEHVDNIYTTVKQ-YHSNLSI 138 (335)
Q Consensus 75 vd~l~~l~v~~~KIaS~d~~n~~LL~~~----a~~gkPv---ilStG--------~~~tl~Ei~~Av~~i~~-g~~~~~~ 138 (335)
++...+.|++.+.|. ..+|+.+-++.. .+.|+-+ |--|| .. +++-+.+.++.+.. |.. .|
T Consensus 633 i~~a~~~Gid~~rif-d~lnd~~~~~~~i~~vk~~g~~~~~~i~ytg~~~d~~~~~~-~~~~~~~~a~~l~~~Ga~--~i 708 (1146)
T PRK12999 633 VREAAAAGIDVFRIF-DSLNWVENMRVAIDAVRETGKIAEAAICYTGDILDPARAKY-DLDYYVDLAKELEKAGAH--IL 708 (1146)
T ss_pred HHHHHHcCCCEEEEe-ccCChHHHHHHHHHHHHHcCCeEEEEEEEEecCCCCCCCCC-CHHHHHHHHHHHHHcCCC--EE
Confidence 556667889998886 355555555443 3346532 22242 23 67777776666666 544 34
Q ss_pred eecccCCCCCCCCcccccCceEEeeecCCCCCCccCCCchHHHHHHHHCCCCCeecCCCCC-C--hHHHHHHHHcCCcEE
Q psy17999 139 LHCVSAYPTPYPTVKQYHSNLSILHCVSAYPTPYHDINLNVIHTLRSRYPDIPIGYSGHEN-G--VHVCYAAVAMGAQII 215 (335)
Q Consensus 139 ~~c~~g~~~~~~~~~~~~~~l~llHC~s~YP~~~~~~nL~~i~~L~~~fp~~pVG~SdHt~-g--~~~~~aAvalGA~vI 215 (335)
-+|+.. .+=+|..-.+| +..||+.+ ++||++=.|.. | ....++|+..||++|
T Consensus 709 ~ikDt~----------------------G~l~P~~~~~l--v~~lk~~~-~ipi~~H~Hnt~Gla~an~laA~~aGad~v 763 (1146)
T PRK12999 709 AIKDMA----------------------GLLKPAAAYEL--VSALKEEV-DLPIHLHTHDTSGNGLATYLAAAEAGVDIV 763 (1146)
T ss_pred EECCcc----------------------CCCCHHHHHHH--HHHHHHHc-CCeEEEEeCCCCchHHHHHHHHHHhCCCEE
Confidence 344432 33344433333 78899999 89999988864 4 556789999999998
Q ss_pred Ee
Q psy17999 216 EK 217 (335)
Q Consensus 216 Ek 217 (335)
.-
T Consensus 764 D~ 765 (1146)
T PRK12999 764 DV 765 (1146)
T ss_pred Ee
Confidence 83
No 219
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=85.97 E-value=12 Score=36.07 Aligned_cols=106 Identities=17% Similarity=0.240 Sum_probs=70.8
Q ss_pred EEEEcCCCCCCHHHHHHHH----hcCCcEEEeCCCCCCHHHHHHHHHHHHhcCCCCceeecccCCCCCCCCcccccCceE
Q psy17999 85 FIKIGSGDSNNIPLIKYAA----SKQKPLIISTGMLPSIEHVDNIYTTVKQYHSNLSILHCVSAYPTPYPTVKQYHSNLS 160 (335)
Q Consensus 85 ~~KIaS~d~~n~~LL~~~a----~~gkPvilStG~~~tl~Ei~~Av~~i~~g~~~~~~~~c~~g~~~~~~~~~~~~~~l~ 160 (335)
-|=|++.++.|++.++.+- +.+.||||....+ .++-
T Consensus 17 ~yaV~Afn~~n~e~~~avi~aAe~~~~Pvii~~~~~-~~~~--------------------------------------- 56 (281)
T PRK06806 17 NYGVGAFSVANMEMVMGAIKAAEELNSPIILQIAEV-RLNH--------------------------------------- 56 (281)
T ss_pred CceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEcCcc-hhcc---------------------------------------
Confidence 3667888888888877643 4699999998866 2111
Q ss_pred EeeecCCCCCCccCCCchHHHHHHHHCCCCCeec-CCCCCChHHHHHHHHcCCcEEEeccCCCCCCCCCCCCCCCCHHHH
Q psy17999 161 ILHCVSAYPTPYHDINLNVIHTLRSRYPDIPIGY-SGHENGVHVCYAAVAMGAQIIEKHFTLDKSWKGSDHASSLTPPEL 239 (335)
Q Consensus 161 llHC~s~YP~~~~~~nL~~i~~L~~~fp~~pVG~-SdHt~g~~~~~aAvalGA~vIEkH~tld~~~~G~Dh~~Sl~p~el 239 (335)
.+.+.+ -..+..+.+++ .+||.. -||.........|+..|++.|= +| . ..++.+|.
T Consensus 57 ---------~~~~~~-~~~~~~~a~~~-~vpv~lHlDH~~~~e~i~~Al~~G~tsVm----~d-------~-s~~~~~en 113 (281)
T PRK06806 57 ---------SPLHLI-GPLMVAAAKQA-KVPVAVHFDHGMTFEKIKEALEIGFTSVM----FD-------G-SHLPLEEN 113 (281)
T ss_pred ---------CChHHH-HHHHHHHHHHC-CCCEEEECCCCCCHHHHHHHHHcCCCEEE----Ec-------C-CCCCHHHH
Confidence 001101 12344566677 899965 6999999999999999999775 32 1 12456777
Q ss_pred HHHHHHHHHHHHHh
Q psy17999 240 KALVTGIRDIEQSL 253 (335)
Q Consensus 240 ~~lv~~ir~~~~al 253 (335)
-++.+.++++-...
T Consensus 114 i~~t~~v~~~a~~~ 127 (281)
T PRK06806 114 IQKTKEIVELAKQY 127 (281)
T ss_pred HHHHHHHHHHHHHc
Confidence 77777777765543
No 220
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=85.87 E-value=29 Score=34.35 Aligned_cols=143 Identities=10% Similarity=0.073 Sum_probs=83.6
Q ss_pred CCHHHHHHHHHHHHHc------CCceEe---ccCChhhHHHHHhCCCCEEEEcCCCCCCHHHHHHHHhcCCcEEEeCCCC
Q psy17999 46 FSQEEYVMLQQCADQV------DIMFTA---SAMDQVSFDFLLSANVPFIKIGSGDSNNIPLIKYAASKQKPLIISTGML 116 (335)
Q Consensus 46 l~~e~~~~L~~~~~~~------Gi~f~s---tpfd~~svd~l~~l~v~~~KIaS~d~~n~~LL~~~a~~gkPvilStG~~ 116 (335)
++.++++++.+.+++. |+.++. .++..+.++.+.+.+++++-++.+.-. + ++++-+.|..|+.-.+
T Consensus 37 ~~~e~l~~~i~~~~~l~tdkPfGVnl~~~~~~~~~~~~l~vi~e~~v~~V~~~~G~P~--~-~~~lk~~Gi~v~~~v~-- 111 (320)
T cd04743 37 MRGEQVKALLEETAELLGDKPWGVGILGFVDTELRAAQLAVVRAIKPTFALIAGGRPD--Q-ARALEAIGISTYLHVP-- 111 (320)
T ss_pred CCHHHHHHHHHHHHHhccCCCeEEEEeccCCCcchHHHHHHHHhcCCcEEEEcCCChH--H-HHHHHHCCCEEEEEeC--
Confidence 6778888888777773 333332 344567889999999999998876543 2 5777788999997776
Q ss_pred CCHHHHHHHHHHHHhcCCCCceeecccCCCCCCCCcccccCceEEeeecCCCCCCccCCCchHHHHHHHHC-----CCCC
Q psy17999 117 PSIEHVDNIYTTVKQYHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYPTPYHDINLNVIHTLRSRY-----PDIP 191 (335)
Q Consensus 117 ~tl~Ei~~Av~~i~~g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~s~YP~~~~~~nL~~i~~L~~~f-----p~~p 191 (335)
|+.+-..+.+ .|.. .++-.|.=.+.|.- ..++++ +--..+..|...+ .++|
T Consensus 112 -s~~~A~~a~~---~GaD----~vVaqG~EAGGH~G-----------~~~t~~-----L~~~v~~~l~~~~~~~~~~~iP 167 (320)
T cd04743 112 -SPGLLKQFLE---NGAR----KFIFEGRECGGHVG-----------PRSSFV-----LWESAIDALLAANGPDKAGKIH 167 (320)
T ss_pred -CHHHHHHHHH---cCCC----EEEEecCcCcCCCC-----------CCCchh-----hHHHHHHHHHHhhcccccCCcc
Confidence 6666655443 2433 34444544443310 011111 1111223343222 1689
Q ss_pred eecCCCCCChHHHHHHHHcCCcEEEe
Q psy17999 192 IGYSGHENGVHVCYAAVAMGAQIIEK 217 (335)
Q Consensus 192 VG~SdHt~g~~~~~aAvalGA~vIEk 217 (335)
|..++=...-....+|.+|||.+.||
T Consensus 168 ViAAGGI~dgr~~aaalaLGA~~~~~ 193 (320)
T cd04743 168 LLFAGGIHDERSAAMVSALAAPLAER 193 (320)
T ss_pred EEEEcCCCCHHHHHHHHHcCCccccc
Confidence 87766554455556788888844443
No 221
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=85.82 E-value=13 Score=32.95 Aligned_cols=136 Identities=15% Similarity=0.130 Sum_probs=77.2
Q ss_pred CCHHHHHHHHHHH-HHcCCceEeccCCh-hhHHHHHhCCCCEEEEcCCCC-CCHHHHHHHHhcCCcEEEeCCCCCCHHHH
Q psy17999 46 FSQEEYVMLQQCA-DQVDIMFTASAMDQ-VSFDFLLSANVPFIKIGSGDS-NNIPLIKYAASKQKPLIISTGMLPSIEHV 122 (335)
Q Consensus 46 l~~e~~~~L~~~~-~~~Gi~f~stpfd~-~svd~l~~l~v~~~KIaS~d~-~n~~LL~~~a~~gkPvilStG~~~tl~Ei 122 (335)
++.+..++|++.+ ...++.+++. |. +-++.+.++|++.+.|+-... +....++.+-+.+.-+.++++.. +..+.
T Consensus 44 ~~~~~~~~i~~~~~~~~~v~l~~~--d~~~~~~~~~~~g~dgv~vh~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~ 120 (211)
T cd00429 44 FGPPVVKALRKHTDLPLDVHLMVE--NPERYIEAFAKAGADIITFHAEATDHLHRTIQLIKELGMKAGVALNPG-TPVEV 120 (211)
T ss_pred cCHHHHHHHHhhCCCcEEEEeeeC--CHHHHHHHHHHcCCCEEEECccchhhHHHHHHHHHHCCCeEEEEecCC-CCHHH
Confidence 5556777777776 3333334443 32 246777889999998876543 23456677777789999999876 54444
Q ss_pred HHHHHHHHhcCCCCceeecccCCCCCCCCcccccCceEEeeecCCCCCCc-cCCC---chHHHHHHHHCC----CCCeec
Q psy17999 123 DNIYTTVKQYHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYPTPY-HDIN---LNVIHTLRSRYP----DIPIGY 194 (335)
Q Consensus 123 ~~Av~~i~~g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~s~YP~~~-~~~n---L~~i~~L~~~fp----~~pVG~ 194 (335)
.+++. .+ . +++++-++ +|+.. ...+ +..+..+++.++ ++||..
T Consensus 121 ~~~~~---~~-~-----------------------d~i~~~~~--~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~pi~v 171 (211)
T cd00429 121 LEPYL---DE-V-----------------------DLVLVMSV--NPGFGGQKFIPEVLEKIRKLRELIPENNLNLLIEV 171 (211)
T ss_pred HHHHH---hh-C-----------------------CEEEEEEE--CCCCCCcccCHHHHHHHHHHHHHHHhcCCCeEEEE
Confidence 33321 11 2 44444443 34322 2233 344555555552 477754
Q ss_pred CCCCCChHHHHHHHHcCCcE
Q psy17999 195 SGHENGVHVCYAAVAMGAQI 214 (335)
Q Consensus 195 SdHt~g~~~~~aAvalGA~v 214 (335)
.+ -....-...+...||+.
T Consensus 172 ~G-GI~~env~~~~~~gad~ 190 (211)
T cd00429 172 DG-GINLETIPLLAEAGADV 190 (211)
T ss_pred EC-CCCHHHHHHHHHcCCCE
Confidence 44 22234445567788883
No 222
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=85.79 E-value=4.5 Score=41.18 Aligned_cols=80 Identities=14% Similarity=0.140 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHc-CCceEe-ccCChhhHHHHHhCCCCEEEEcCCC--------C-----CCHHHH---HHHH-hcCCc
Q psy17999 48 QEEYVMLQQCADQV-DIMFTA-SAMDQVSFDFLLSANVPFIKIGSGD--------S-----NNIPLI---KYAA-SKQKP 108 (335)
Q Consensus 48 ~e~~~~L~~~~~~~-Gi~f~s-tpfd~~svd~l~~l~v~~~KIaS~d--------~-----~n~~LL---~~~a-~~gkP 108 (335)
......+++..+++ ++.++. -+-+.+.+..+.++|+|+++++-+. + ..+..+ ..++ +.+.|
T Consensus 179 ~~~~~~v~~ik~~~p~~~vi~g~V~T~e~a~~l~~aGaD~I~vG~g~Gs~c~tr~~~g~g~p~ltai~~v~~~~~~~~vp 258 (404)
T PRK06843 179 TRIIELVKKIKTKYPNLDLIAGNIVTKEAALDLISVGADCLKVGIGPGSICTTRIVAGVGVPQITAICDVYEVCKNTNIC 258 (404)
T ss_pred hhHHHHHHHHHhhCCCCcEEEEecCCHHHHHHHHHcCCCEEEECCCCCcCCcceeecCCCCChHHHHHHHHHHHhhcCCe
Confidence 33444454555555 576644 8899999999999999999987311 1 123334 4443 35899
Q ss_pred EEEeCCCCCCHHHHHHHHHH
Q psy17999 109 LIISTGMLPSIEHVDNIYTT 128 (335)
Q Consensus 109 vilStG~~~tl~Ei~~Av~~ 128 (335)
||..-|.. +..+|.+|+..
T Consensus 259 VIAdGGI~-~~~Di~KALal 277 (404)
T PRK06843 259 IIADGGIR-FSGDVVKAIAA 277 (404)
T ss_pred EEEeCCCC-CHHHHHHHHHc
Confidence 99999999 99999998763
No 223
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=85.72 E-value=5.2 Score=39.18 Aligned_cols=119 Identities=15% Similarity=0.195 Sum_probs=67.9
Q ss_pred CCCCcEEEeec---ccccccccccccCCCCCCCCCCcccHHHHHHhhcCCHHHHHHHHHHHH---HcCCceEe-----cc
Q psy17999 1 ECGADCVKFQK---SCLSTKFTQSALDRPYLSPHAWANTYGQHKQHLEFSQEEYVMLQQCAD---QVDIMFTA-----SA 69 (335)
Q Consensus 1 ~aGaDaVKFQ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~e~~~~L~~~~~---~~Gi~f~s-----tp 69 (335)
++|.|.|++.. |-...+++...- .....||.+ +.++.+|..+-++.+++.+- ..++.+-. .-
T Consensus 165 ~aGfDgVei~~~~gyLl~qFlsp~~N----~R~D~yGgs---l~nr~rf~~eiv~aIR~~vG~d~~v~vri~~~~~~~~g 237 (336)
T cd02932 165 EAGFDVIEIHAAHGYLLHQFLSPLSN----KRTDEYGGS---LENRMRFLLEVVDAVRAVWPEDKPLFVRISATDWVEGG 237 (336)
T ss_pred HcCCCEEEEccccccHHHHhcCCccC----CCCcccCCC---HHHHhHHHHHHHHHHHHHcCCCceEEEEEcccccCCCC
Confidence 48999999874 222222222110 001124543 34456677777777777662 12332221 11
Q ss_pred CChhh----HHHHHhCCCCEEEEcCC-----------CCCCHHHHHHHHh-cCCcEEEeCCCCCCHHHHHHHHH
Q psy17999 70 MDQVS----FDFLLSANVPFIKIGSG-----------DSNNIPLIKYAAS-KQKPLIISTGMLPSIEHVDNIYT 127 (335)
Q Consensus 70 fd~~s----vd~l~~l~v~~~KIaS~-----------d~~n~~LL~~~a~-~gkPvilStG~~~tl~Ei~~Av~ 127 (335)
++.+. +..|++.|++++-|.++ ...+.++++++.+ ++.||+..=|.. |.++++++++
T Consensus 238 ~~~~e~~~ia~~Le~~gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~G~i~-t~~~a~~~l~ 310 (336)
T cd02932 238 WDLEDSVELAKALKELGVDLIDVSSGGNSPAQKIPVGPGYQVPFAERIRQEAGIPVIAVGLIT-DPEQAEAILE 310 (336)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECCCCCCcccccCCCccccHHHHHHHHhhCCCCEEEeCCCC-CHHHHHHHHH
Confidence 23332 34566789999998643 2235577777765 589999887777 8888887644
No 224
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=85.66 E-value=14 Score=34.83 Aligned_cols=147 Identities=16% Similarity=0.199 Sum_probs=80.6
Q ss_pred hcCCHHHHHHHHHHHHHcCCceEeccCChhhHHHHHhCCCCEEEEcCCCC--CCHHHHHHHHhcCCcEEEeCCCCCCHHH
Q psy17999 44 LEFSQEEYVMLQQCADQVDIMFTASAMDQVSFDFLLSANVPFIKIGSGDS--NNIPLIKYAASKQKPLIISTGMLPSIEH 121 (335)
Q Consensus 44 ~el~~e~~~~L~~~~~~~Gi~f~stpfd~~svd~l~~l~v~~~KIaS~d~--~n~~LL~~~a~~gkPvilStG~~~tl~E 121 (335)
..|+.++-..+.+...+.|+ +.+-++...+ +.+..++++.+.+.++.+..-..+..++
T Consensus 15 ~~~~~~~k~~i~~~L~~~Gv--------------------~~iE~g~p~~~~~~~e~~~~l~~~~~~~~~~~~~r~~~~~ 74 (259)
T cd07939 15 VAFSREEKLAIARALDEAGV--------------------DEIEVGIPAMGEEEREAIRAIVALGLPARLIVWCRAVKED 74 (259)
T ss_pred CCCCHHHHHHHHHHHHHcCC--------------------CEEEEecCCCCHHHHHHHHHHHhcCCCCEEEEeccCCHHH
Confidence 35777777777666666664 4444443333 3345788887765555444333238888
Q ss_pred HHHHHHHHHhcCCCCceeecccCCCCCCCCcccccCceEEeeecCCCCCCccCCCc----------hHHHHHHHHCCCCC
Q psy17999 122 VDNIYTTVKQYHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYPTPYHDINL----------NVIHTLRSRYPDIP 191 (335)
Q Consensus 122 i~~Av~~i~~g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~s~YP~~~~~~nL----------~~i~~L~~~fp~~p 191 (335)
++.|.+. |-. .+.+.=.+|.+-.. ..+|. ..+...|+ - +..
T Consensus 75 v~~a~~~---g~~-----------------------~i~i~~~~s~~~~~-~~~~~~~~~~~~~~~~~i~~a~~-~-G~~ 125 (259)
T cd07939 75 IEAALRC---GVT-----------------------AVHISIPVSDIHLA-HKLGKDRAWVLDQLRRLVGRAKD-R-GLF 125 (259)
T ss_pred HHHHHhC---CcC-----------------------EEEEEEecCHHHHH-HHhCCCHHHHHHHHHHHHHHHHH-C-CCe
Confidence 8876542 222 23222233322100 11221 23333343 2 455
Q ss_pred e--ecC---CCCCC--hHHHHHHHHcCCcEEEeccCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q psy17999 192 I--GYS---GHENG--VHVCYAAVAMGAQIIEKHFTLDKSWKGSDHASSLTPPELKALVTGIRDI 249 (335)
Q Consensus 192 V--G~S---dHt~g--~~~~~aAvalGA~vIEkH~tld~~~~G~Dh~~Sl~p~el~~lv~~ir~~ 249 (335)
| ++. -|+.. ...+..++.+|++.|= + .|..-.+.|+++.++++.+++.
T Consensus 126 v~~~~~~~~~~~~~~~~~~~~~~~~~G~~~i~----l------~DT~G~~~P~~v~~lv~~l~~~ 180 (259)
T cd07939 126 VSVGAEDASRADPDFLIEFAEVAQEAGADRLR----F------ADTVGILDPFTTYELIRRLRAA 180 (259)
T ss_pred EEEeeccCCCCCHHHHHHHHHHHHHCCCCEEE----e------CCCCCCCCHHHHHHHHHHHHHh
Confidence 5 332 23333 3344567788998643 3 2788899999999999999863
No 225
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=85.64 E-value=18 Score=34.18 Aligned_cols=201 Identities=12% Similarity=0.035 Sum_probs=113.8
Q ss_pred HHHHHHHcCCceEeccCChhhHHHHHhCCCCEEEEcCCCCCCHHHHHHHHhcCCcEEEeCCCCCCHHHHHHHHHHHHhcC
Q psy17999 54 LQQCADQVDIMFTASAMDQVSFDFLLSANVPFIKIGSGDSNNIPLIKYAASKQKPLIISTGMLPSIEHVDNIYTTVKQYH 133 (335)
Q Consensus 54 L~~~~~~~Gi~f~stpfd~~svd~l~~l~v~~~KIaS~d~~n~~LL~~~a~~gkPvilStG~~~tl~Ei~~Av~~i~~g~ 133 (335)
|.+..++....++.++||.-++..+++.|+|++-++|.-. .+..|.| +|+.- |++|+...++.+.++.
T Consensus 4 ~~~~~~~~~~i~~~~ayD~~sA~i~e~aG~dai~v~~s~~--------a~~~G~p---D~~~v-tl~em~~~~~~I~r~~ 71 (240)
T cd06556 4 LQKYKQEKERFATLTAYDYSMAKQFADAGLNVMLVGDSQG--------MTVAGYD---DTLPY-PVNDVPYHVRAVRRGA 71 (240)
T ss_pred HHHHHhCCCeEEEecCCCHHHHHHHHHcCCCEEEEChHHH--------HHhcCCC---CCCCc-CHHHHHHHHHHHHhhC
Confidence 4444455678899999999999999999999999999643 2334777 67767 9999999999887643
Q ss_pred CCCceeecccCCCCCCCCcccccCceEEeeecCCCCCCccCCCchHHHHHHHHC-CCCC-eecCCCCCChHHHHHHHHcC
Q psy17999 134 SNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYPTPYHDINLNVIHTLRSRY-PDIP-IGYSGHENGVHVCYAAVAMG 211 (335)
Q Consensus 134 ~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~s~YP~~~~~~nL~~i~~L~~~f-p~~p-VG~SdHt~g~~~~~aAvalG 211 (335)
+ . -.++--+-..|-.+ ...++.+.++.. .++. |-.=|...-.....++++.|
T Consensus 72 ~--~--------------------~pviaD~~~G~g~~----~~~~~~~~~~l~~aGa~gv~iED~~~~~~~i~ai~~a~ 125 (240)
T cd06556 72 P--L--------------------ALIVADLPFGAYGA----PTAAFELAKTFMRAGAAGVKIEGGEWHIETLQMLTAAA 125 (240)
T ss_pred C--C--------------------CCEEEeCCCCCCcC----HHHHHHHHHHHHHcCCcEEEEcCcHHHHHHHHHHHHcC
Confidence 2 0 12222233333222 134444444322 0221 11113211122235566777
Q ss_pred CcEEEeccCCCC---CCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCCccCCccccccc---cccceEEE--EeecCCC
Q psy17999 212 AQIIEKHFTLDK---SWKGSDHASSLTPPELKALVTGIRDIEQSLGSPTKRMQVSEAPCY---AKLGKCIV--SSCDIQA 283 (335)
Q Consensus 212 A~vIEkH~tld~---~~~G~Dh~~Sl~p~el~~lv~~ir~~~~alG~~~k~~~~~E~~~~---~~~rrsl~--a~~di~~ 283 (335)
.-|+ -|..+.. ...|.+..+-.+.+++++.++..+..+.+--+..--....+...+ +.+..-+. ..-.--.
T Consensus 126 i~Vi-aRtd~~pq~~~~~gg~~~~~~~~~~~~~ai~Ra~ay~~AGAd~i~~e~~~~e~~~~i~~~~~~P~~~~gag~~~d 204 (240)
T cd06556 126 VPVI-AHTGLTPQSVNTSGGDEGQYRGDEAGEQLIADALAYAPAGADLIVMECVPVELAKQITEALAIPLAGIGAGSGTD 204 (240)
T ss_pred CeEE-EEeCCchhhhhccCCceeeccCHHHHHHHHHHHHHHHHcCCCEEEEcCCCHHHHHHHHHhCCCCEEEEecCcCCC
Confidence 5555 7876632 123334445566889999999999998873333222121111111 11221222 2233456
Q ss_pred CcccccCCcE
Q psy17999 284 GTVLQEFHVC 293 (335)
Q Consensus 284 G~~l~~~dl~ 293 (335)
|++|...|+-
T Consensus 205 gq~lv~~d~l 214 (240)
T cd06556 205 GQFLVLADAF 214 (240)
T ss_pred ceEEeHHhhh
Confidence 8888888864
No 226
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=85.60 E-value=18 Score=37.72 Aligned_cols=137 Identities=17% Similarity=0.236 Sum_probs=80.1
Q ss_pred HHHhCCCCEEEEcCCCCC--CHHHHHHHHhcC-CcEEEeCCCCCCHHHHHHHHHHHHh-cCCCCceeecccCCCCCCCCc
Q psy17999 77 FLLSANVPFIKIGSGDSN--NIPLIKYAASKQ-KPLIISTGMLPSIEHVDNIYTTVKQ-YHSNLSILHCVSAYPTPYPTV 152 (335)
Q Consensus 77 ~l~~l~v~~~KIaS~d~~--n~~LL~~~a~~g-kPvilStG~~~tl~Ei~~Av~~i~~-g~~~~~~~~c~~g~~~~~~~~ 152 (335)
.|.++||+.|-+|+.-.. ....++++++.. .|-|..-+.+ ..++|+.|++.+.. +..
T Consensus 31 ~L~~~GV~~IEvG~p~~s~~d~e~v~~i~~~~~~~~i~al~r~-~~~did~a~~al~~~~~~------------------ 91 (494)
T TIGR00973 31 ALERLGVDIIEAGFPVSSPGDFEAVQRIARTVKNPRVCGLARC-VEKDIDAAAEALKPAEKF------------------ 91 (494)
T ss_pred HHHHcCCCEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEEcCC-CHHhHHHHHHhccccCCC------------------
Confidence 344455666665554332 356677776554 3777777777 89999999887654 322
Q ss_pred ccccCceEEeeecC------CCCCCc-cCCC--chHHHHHHHHCCCCCeecCCCCCC-------hHHHHHHHHcCCcEEE
Q psy17999 153 KQYHSNLSILHCVS------AYPTPY-HDIN--LNVIHTLRSRYPDIPIGYSGHENG-------VHVCYAAVAMGAQIIE 216 (335)
Q Consensus 153 ~~~~~~l~llHC~s------~YP~~~-~~~n--L~~i~~L~~~fp~~pVG~SdHt~g-------~~~~~aAvalGA~vIE 216 (335)
.+.+.-.+| .+-... +.++ ...+...++. +..|-|+.=..+ ..++.++..+||+.|=
T Consensus 92 -----~v~i~~~~S~~h~~~~l~~s~~e~l~~~~~~v~~a~~~--g~~v~f~~Ed~~r~d~~~l~~~~~~~~~~Ga~~i~ 164 (494)
T TIGR00973 92 -----RIHTFIATSPIHLEHKLKMTRDEVLERAVGMVKYAKNF--TDDVEFSCEDAGRTEIPFLARIVEAAINAGATTIN 164 (494)
T ss_pred -----EEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHc--CCeEEEEcCCCCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 222222222 222222 1111 1234444543 456766532211 4456778889998644
Q ss_pred eccCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q psy17999 217 KHFTLDKSWKGSDHASSLTPPELKALVTGIRDI 249 (335)
Q Consensus 217 kH~tld~~~~G~Dh~~Sl~p~el~~lv~~ir~~ 249 (335)
+ +|-.-.++|+++.++++.+++.
T Consensus 165 ----l------~DTvG~~~P~~~~~~i~~l~~~ 187 (494)
T TIGR00973 165 ----I------PDTVGYALPAEYGNLIKGLREN 187 (494)
T ss_pred ----e------CCCCCCCCHHHHHHHHHHHHHh
Confidence 3 3777889999999999998763
No 227
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=85.43 E-value=5.3 Score=37.43 Aligned_cols=86 Identities=15% Similarity=0.182 Sum_probs=58.9
Q ss_pred eccCChhhHHHHHhCCCCEEEEcCCCCCCHHHHHHHHhcCCcEEEeCCCCCCHHHHHHHHHHHHhcCCCCceeecccCCC
Q psy17999 67 ASAMDQVSFDFLLSANVPFIKIGSGDSNNIPLIKYAASKQKPLIISTGMLPSIEHVDNIYTTVKQYHSNLSILHCVSAYP 146 (335)
Q Consensus 67 stpfd~~svd~l~~l~v~~~KIaS~d~~n~~LL~~~a~~gkPvilStG~~~tl~Ei~~Av~~i~~g~~~~~~~~c~~g~~ 146 (335)
-|+.+.++++.+.+.|.+|+--+. .|..+++++-+.+.|+| -|.. |+.|+..|.+. |..
T Consensus 76 GTVl~~e~a~~a~~aGA~FiVsP~---~~~~v~~~~~~~~i~~i--PG~~-TpsEi~~A~~~---Ga~------------ 134 (222)
T PRK07114 76 GSIVDAATAALYIQLGANFIVTPL---FNPDIAKVCNRRKVPYS--PGCG-SLSEIGYAEEL---GCE------------ 134 (222)
T ss_pred EeCcCHHHHHHHHHcCCCEEECCC---CCHHHHHHHHHcCCCEe--CCCC-CHHHHHHHHHC---CCC------------
Confidence 467777777777777777766443 56777777777776665 3555 88888877653 322
Q ss_pred CCCCCcccccCceEEeeecCCCCCCccCCCchHHHHHHHHCCCCCe
Q psy17999 147 TPYPTVKQYHSNLSILHCVSAYPTPYHDINLNVIHTLRSRYPDIPI 192 (335)
Q Consensus 147 ~~~~~~~~~~~~l~llHC~s~YP~~~~~~nL~~i~~L~~~fp~~pV 192 (335)
++=-||+. ....+.|..|+.=||++++
T Consensus 135 -----------------~vKlFPA~--~~G~~~ikal~~p~p~i~~ 161 (222)
T PRK07114 135 -----------------IVKLFPGS--VYGPGFVKAIKGPMPWTKI 161 (222)
T ss_pred -----------------EEEECccc--ccCHHHHHHHhccCCCCeE
Confidence 12237866 4678889999999998776
No 228
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=85.34 E-value=4.7 Score=39.85 Aligned_cols=117 Identities=15% Similarity=0.136 Sum_probs=64.8
Q ss_pred CCCCcEEEeecccccccccccccCCCCCC--CCCCcccHHHHHHhhcCCHHHHHHHHHHHHHcCCceEec----c-----
Q psy17999 1 ECGADCVKFQKSCLSTKFTQSALDRPYLS--PHAWANTYGQHKQHLEFSQEEYVMLQQCADQVDIMFTAS----A----- 69 (335)
Q Consensus 1 ~aGaDaVKFQ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~el~~e~~~~L~~~~~~~Gi~f~st----p----- 69 (335)
+||.|+|.+.- ----|+ .++..|... ...||.+ +.++..|..+-++.+++.+ |-+|... +
T Consensus 148 ~aGfDgVeih~-ahGyLl--~qFlsp~~N~RtD~yGGs---lenR~r~~~eiv~aIR~~v---G~d~~v~iRi~~~D~~~ 218 (353)
T cd02930 148 EAGYDGVEIMG-SEGYLI--NQFLAPRTNKRTDEWGGS---FENRMRFPVEIVRAVRAAV---GEDFIIIYRLSMLDLVE 218 (353)
T ss_pred HcCCCEEEEec-ccchHH--HHhcCCccCCCcCccCCC---HHHHhHHHHHHHHHHHHHc---CCCceEEEEecccccCC
Confidence 48999999843 100011 111122111 1124443 3455566666666666554 4443221 1
Q ss_pred --CChhh----HHHHHhCCCCEEEEcCCCC--------------CCHHHHHHHHh-cCCcEEEeCCCCCCHHHHHHHHH
Q psy17999 70 --MDQVS----FDFLLSANVPFIKIGSGDS--------------NNIPLIKYAAS-KQKPLIISTGMLPSIEHVDNIYT 127 (335)
Q Consensus 70 --fd~~s----vd~l~~l~v~~~KIaS~d~--------------~n~~LL~~~a~-~gkPvilStG~~~tl~Ei~~Av~ 127 (335)
++.+. ++.|+++|+|++-|..+.. .+.++.+++.+ ++.||+..-+.. +.++++++++
T Consensus 219 ~g~~~~e~~~i~~~Le~~G~d~i~vs~g~~e~~~~~~~~~~~~~~~~~~~~~ik~~v~iPVi~~G~i~-~~~~a~~~i~ 296 (353)
T cd02930 219 GGSTWEEVVALAKALEAAGADILNTGIGWHEARVPTIATSVPRGAFAWATAKLKRAVDIPVIASNRIN-TPEVAERLLA 296 (353)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCccccccCCchhhHHHHHHHHHhCCCCEEEcCCCC-CHHHHHHHHH
Confidence 34332 3566788999999853311 13555666655 488999887778 8888887754
No 229
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=85.30 E-value=6.5 Score=37.90 Aligned_cols=76 Identities=11% Similarity=0.020 Sum_probs=58.4
Q ss_pred HHHHHHHHHHcCCceEec-cCChhhHHHHHhCCCCEEEEcC-------CCCCCHHHHHHHHhc---CCcEEEeCCCCCCH
Q psy17999 51 YVMLQQCADQVDIMFTAS-AMDQVSFDFLLSANVPFIKIGS-------GDSNNIPLIKYAASK---QKPLIISTGMLPSI 119 (335)
Q Consensus 51 ~~~L~~~~~~~Gi~f~st-pfd~~svd~l~~l~v~~~KIaS-------~d~~n~~LL~~~a~~---gkPvilStG~~~tl 119 (335)
+..+.+..+..+++++.- +.+.+.+..+.+.|++++-+.. +...++.+|.++.+. +.|||.+-|.. +-
T Consensus 161 ~~~i~~l~~~~~~pvivK~v~s~~~a~~a~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~ipvia~GGI~-~~ 239 (299)
T cd02809 161 WDDLAWLRSQWKGPLILKGILTPEDALRAVDAGADGIVVSNHGGRQLDGAPATIDALPEIVAAVGGRIEVLLDGGIR-RG 239 (299)
T ss_pred HHHHHHHHHhcCCCEEEeecCCHHHHHHHHHCCCCEEEEcCCCCCCCCCCcCHHHHHHHHHHHhcCCCeEEEeCCCC-CH
Confidence 355666666667776643 6888889999999999998844 234677788888663 48999999999 99
Q ss_pred HHHHHHHH
Q psy17999 120 EHVDNIYT 127 (335)
Q Consensus 120 ~Ei~~Av~ 127 (335)
.++.+++.
T Consensus 240 ~d~~kal~ 247 (299)
T cd02809 240 TDVLKALA 247 (299)
T ss_pred HHHHHHHH
Confidence 99998875
No 230
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=85.30 E-value=6.6 Score=36.94 Aligned_cols=136 Identities=18% Similarity=0.166 Sum_probs=87.6
Q ss_pred HHHHHcCCceEeccCChhhHHHHHhCCCCEEEEcCCCCCCHHHHHHHHhcCCcEEEeCCCCCCHHHHHHHHHHHHhcCCC
Q psy17999 56 QCADQVDIMFTASAMDQVSFDFLLSANVPFIKIGSGDSNNIPLIKYAASKQKPLIISTGMLPSIEHVDNIYTTVKQYHSN 135 (335)
Q Consensus 56 ~~~~~~Gi~f~stpfd~~svd~l~~l~v~~~KIaS~d~~n~~LL~~~a~~gkPvilStG~~~tl~Ei~~Av~~i~~g~~~ 135 (335)
+.-++-+..++.++||.-|+..+++.|++++-++|.-+.. ..|.| ++|.. +++|+...++.+.....
T Consensus 3 ~l~~~~~~i~~~~~~D~~sA~~~e~~G~~ai~~s~~~~~~--------s~G~p---D~~~~-~~~e~~~~~~~I~~~~~- 69 (243)
T cd00377 3 ALLESGGPLVLPGAWDALSARLAERAGFKAIYTSGAGVAA--------SLGLP---DGGLL-TLDEVLAAVRRIARAVD- 69 (243)
T ss_pred hHHhCCCcEEecCCCCHHHHHHHHHcCCCEEEeccHHHHH--------hcCCC---CCCcC-CHHHHHHHHHHHHhhcc-
Confidence 3445567899999999999999999999999999975432 22666 67777 99999998887764211
Q ss_pred CceeecccCCCCCCCCcccccCceEEeeecCCCCCCccCCCchHHHHHHHHCCCCCeecCCCCCChHHHHHHHHcCCc--
Q psy17999 136 LSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYPTPYHDINLNVIHTLRSRYPDIPIGYSGHENGVHVCYAAVAMGAQ-- 213 (335)
Q Consensus 136 ~~~~~c~~g~~~~~~~~~~~~~~l~llHC~s~YP~~~~~~nL~~i~~L~~~fp~~pVG~SdHt~g~~~~~aAvalGA~-- 213 (335)
.|. ..+.+.||.+-..-.......+..|+.
T Consensus 70 ----------------------------------~Pv--------------~~D~~~G~g~~~~~~~~v~~~~~~G~~gv 101 (243)
T cd00377 70 ----------------------------------LPV--------------IADADTGYGNALNVARTVRELEEAGAAGI 101 (243)
T ss_pred ----------------------------------CCE--------------EEEcCCCCCCHHHHHHHHHHHHHcCCEEE
Confidence 010 014556665321112223344567887
Q ss_pred EEEeccCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHh
Q psy17999 214 IIEKHFTLDKSWKGSDHASSLTPPELKALVTGIRDIEQSL 253 (335)
Q Consensus 214 vIEkH~tld~~~~G~Dh~~Sl~p~el~~lv~~ir~~~~al 253 (335)
.||-.... +.-....-...++++|+.+.++.+++....+
T Consensus 102 ~iED~~~~-k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~ 140 (243)
T cd00377 102 HIEDQVGP-KKCGHHGGKVLVPIEEFVAKIKAARDARDDL 140 (243)
T ss_pred EEecCCCC-ccccCCCCCeecCHHHHHHHHHHHHHHHhcc
Confidence 88854332 2222223456788888888888777766543
No 231
>cd00740 MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=85.29 E-value=34 Score=32.42 Aligned_cols=76 Identities=5% Similarity=0.002 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHc-CCceEeccCChhhHHHHHhC--CCCEEEEcCCCC---CCHHHHHHHHhcCCcEEEeC----CCCC
Q psy17999 48 QEEYVMLQQCADQV-DIMFTASAMDQVSFDFLLSA--NVPFIKIGSGDS---NNIPLIKYAASKQKPLIIST----GMLP 117 (335)
Q Consensus 48 ~e~~~~L~~~~~~~-Gi~f~stpfd~~svd~l~~l--~v~~~KIaS~d~---~n~~LL~~~a~~gkPvilSt----G~~~ 117 (335)
.+++.++....++. ++++...-++.+.++...+. |+++|==-|+.- ....++..+++.|.|+|+-. |...
T Consensus 55 ~ee~~r~v~~i~~~~~~piSIDT~~~~v~e~aL~~~~G~~iINsIs~~~~~e~~~~~~~~~~~~~~~vV~m~~~~~g~p~ 134 (252)
T cd00740 55 VSAMKWLLNLLATEPTVPLMLDSTNWEVIEAGLKCCQGKCVVNSINLEDGEERFLKVARLAKEHGAAVVVLAFDEQGQAK 134 (252)
T ss_pred HHHHHHHHHHHHHhcCCcEEeeCCcHHHHHHHHhhCCCCcEEEeCCCCCCccccHHHHHHHHHhCCCEEEeccCCCCCCC
Confidence 35566666656654 99999999999999988887 888876555553 23456677889999988843 4333
Q ss_pred CHHHHH
Q psy17999 118 SIEHVD 123 (335)
Q Consensus 118 tl~Ei~ 123 (335)
|.++..
T Consensus 135 t~~~~~ 140 (252)
T cd00740 135 TRDKKV 140 (252)
T ss_pred CHHHHH
Confidence 655533
No 232
>PRK06739 pyruvate kinase; Validated
Probab=85.03 E-value=8.5 Score=38.55 Aligned_cols=88 Identities=17% Similarity=0.220 Sum_probs=66.9
Q ss_pred CHHHHHHHHHHHHHcC---CceEeccCChhhHHHHHhC--CCCEEEEcCCCCCC------HH-----HHHHHHhcCCcEE
Q psy17999 47 SQEEYVMLQQCADQVD---IMFTASAMDQVSFDFLLSA--NVPFIKIGSGDSNN------IP-----LIKYAASKQKPLI 110 (335)
Q Consensus 47 ~~e~~~~L~~~~~~~G---i~f~stpfd~~svd~l~~l--~v~~~KIaS~d~~n------~~-----LL~~~a~~gkPvi 110 (335)
+.++...+++++++.| +.+++=.-..++++-|.+. -.|.+-||=+||.- .| +++.+-+.|||||
T Consensus 189 ~~~Dv~~~r~~l~~~g~~~~~IiaKIE~~~av~nl~eI~~~sDgimVARGDLgve~~~e~vp~~Qk~Ii~~c~~~gkPvI 268 (352)
T PRK06739 189 KPSHIKEIRDFIQQYKETSPNLIAKIETMEAIENFQDICKEADGIMIARGDLGVELPYQFIPLLQKMMIQECNRTNTYVI 268 (352)
T ss_pred CHHHHHHHHHHHHHcCCCCCcEEEEECCHHHHHHHHHHHHhcCEEEEECcccccccCHHHHHHHHHHHHHHHHHhCCCEE
Confidence 5678888899988874 6788888787777655542 27899999998864 23 4445556799999
Q ss_pred EeCCC--------CCCHHHHHHHHHHHHhcCC
Q psy17999 111 ISTGM--------LPSIEHVDNIYTTVKQYHS 134 (335)
Q Consensus 111 lStG~--------~~tl~Ei~~Av~~i~~g~~ 134 (335)
+.|=| .||-+|+-..++.+..|..
T Consensus 269 vATqmLeSM~~~p~PTRAEvsDVanaV~dG~D 300 (352)
T PRK06739 269 TATQMLQSMVDHSIPTRAEVTDVFQAVLDGTN 300 (352)
T ss_pred EEcchHHhhccCCCCChHHHHHHHHHHHhCCc
Confidence 98864 3799999999999887654
No 233
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=84.93 E-value=14 Score=36.82 Aligned_cols=145 Identities=14% Similarity=0.159 Sum_probs=79.2
Q ss_pred cCCHHHHHHHHHHHHHcCCceEeccCChhhHHHHHhCCCCEEEEcCCCCCC--HHHHHHHHhcCC-cEEEeCCCCCCHHH
Q psy17999 45 EFSQEEYVMLQQCADQVDIMFTASAMDQVSFDFLLSANVPFIKIGSGDSNN--IPLIKYAASKQK-PLIISTGMLPSIEH 121 (335)
Q Consensus 45 el~~e~~~~L~~~~~~~Gi~f~stpfd~~svd~l~~l~v~~~KIaS~d~~n--~~LL~~~a~~gk-PvilStG~~~tl~E 121 (335)
.|+.++-.++.+.-.+ +|++.+-++...+.. +..++++.+.+. +.+..-+.. ..++
T Consensus 19 ~~s~~~k~~ia~~L~~--------------------~Gv~~IEvG~p~~~~~~~e~i~~i~~~~~~~~i~~~~r~-~~~d 77 (365)
T TIGR02660 19 AFTAAEKLAIARALDE--------------------AGVDELEVGIPAMGEEERAVIRAIVALGLPARLMAWCRA-RDAD 77 (365)
T ss_pred CCCHHHHHHHHHHHHH--------------------cCCCEEEEeCCCCCHHHHHHHHHHHHcCCCcEEEEEcCC-CHHH
Confidence 4677776666555444 456666665444444 566888877644 344444445 7888
Q ss_pred HHHHHHHHHhcCCCCceeecccCCCCCCCCcccccCceEEeeecCC------CCCCc-cCCC--chHHHHHHHHCCCCCe
Q psy17999 122 VDNIYTTVKQYHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSA------YPTPY-HDIN--LNVIHTLRSRYPDIPI 192 (335)
Q Consensus 122 i~~Av~~i~~g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~s~------YP~~~-~~~n--L~~i~~L~~~fp~~pV 192 (335)
|+.|++. |-. -+.+.-.+|. +-... +.++ ...+...++ . +..|
T Consensus 78 i~~a~~~---g~~-----------------------~i~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~-~-g~~v 129 (365)
T TIGR02660 78 IEAAARC---GVD-----------------------AVHISIPVSDLQIEAKLRKDRAWVLERLARLVSFARD-R-GLFV 129 (365)
T ss_pred HHHHHcC---CcC-----------------------EEEEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHh-C-CCEE
Confidence 8877642 211 1222222221 11111 1111 123444444 3 4555
Q ss_pred ec--CC---CCCC--hHHHHHHHHcCCcEEEeccCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q psy17999 193 GY--SG---HENG--VHVCYAAVAMGAQIIEKHFTLDKSWKGSDHASSLTPPELKALVTGIRD 248 (335)
Q Consensus 193 G~--Sd---Ht~g--~~~~~aAvalGA~vIEkH~tld~~~~G~Dh~~Sl~p~el~~lv~~ir~ 248 (335)
-| .| ++.. ..++.++..+||+.|- + +|-.-.++|+++.++|+.+++
T Consensus 130 ~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~i~----l------~DT~G~~~P~~v~~lv~~l~~ 182 (365)
T TIGR02660 130 SVGGEDASRADPDFLVELAEVAAEAGADRFR----F------ADTVGILDPFSTYELVRALRQ 182 (365)
T ss_pred EEeecCCCCCCHHHHHHHHHHHHHcCcCEEE----E------cccCCCCCHHHHHHHHHHHHH
Confidence 33 22 3333 3445678889998653 2 277778999999999999886
No 234
>PRK13575 3-dehydroquinate dehydratase; Provisional
Probab=84.71 E-value=7 Score=36.81 Aligned_cols=111 Identities=12% Similarity=0.041 Sum_probs=69.5
Q ss_pred CHHHHHHHHHHHHHcCCceEeccCChh----------hHHHHHhCCCCEEEEcCCCC---CCHHHHHHHHh----cCCcE
Q psy17999 47 SQEEYVMLQQCADQVDIMFTASAMDQV----------SFDFLLSANVPFIKIGSGDS---NNIPLIKYAAS----KQKPL 109 (335)
Q Consensus 47 ~~e~~~~L~~~~~~~Gi~f~stpfd~~----------svd~l~~l~v~~~KIaS~d~---~n~~LL~~~a~----~gkPv 109 (335)
+.+...+|.+.+++.|..++.|-+|.+ -+..+.++|.|++||+..-- .+..||+.... .++|+
T Consensus 110 ~~~~~~~l~~~~~~~~~~vI~S~H~F~~TP~~~~l~~~~~~m~~~gaDi~KiAv~~~~~~Dvl~Ll~~~~~~~~~~~~p~ 189 (238)
T PRK13575 110 DIEKHQRLITHLQQYNKEVVISHHNFESTPPLDELKFIFFKMQKFNPEYVKLAVMPHNKNDVLNLLQAMSTFSDTMDCKV 189 (238)
T ss_pred ChHHHHHHHHHHHHcCCEEEEecCCCCCCCCHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHHHHHHHHHhccCCCE
Confidence 357788899999999999999998742 23444567899999988632 34556655443 35785
Q ss_pred EEeCCCCCCHHHHHHHHHHHHhcCCCCceeecccCCCCCCCCcccccCceEEeeecCCCCCCccCCCchHHHHHHHH
Q psy17999 110 IISTGMLPSIEHVDNIYTTVKQYHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYPTPYHDINLNVIHTLRSR 186 (335)
Q Consensus 110 ilStG~~~tl~Ei~~Av~~i~~g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~s~YP~~~~~~nL~~i~~L~~~ 186 (335)
| .-+|+ .+..+-+.+.-+- |. .+ -+|.-.=|+.+.++.+..+..+.+.
T Consensus 190 i-~i~MG-~~G~iSRi~~~~~-GS------------------------~~--Tya~l~~~sAPGQi~v~~l~~i~~~ 237 (238)
T PRK13575 190 V-GISMS-KLGLISRTAQGVF-GG------------------------AL--SYGCIGEPQAPGQIHVTDLKAQVTL 237 (238)
T ss_pred E-EEeCC-CCCchhhcchhhh-CC------------------------ce--EecCCCCCCCCCCCCHHHHHHHHHh
Confidence 4 55566 4444444332211 21 22 3344444667788998877776553
No 235
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=84.62 E-value=40 Score=32.57 Aligned_cols=181 Identities=18% Similarity=0.198 Sum_probs=101.0
Q ss_pred CCCCCCCCcc-cHHHHHHhhc--CCHHHHHHHHHHHHHcCCc--eEecc-CCh---hh----HHHHHhCCCCEEEEcCCC
Q psy17999 26 PYLSPHAWAN-TYGQHKQHLE--FSQEEYVMLQQCADQVDIM--FTASA-MDQ---VS----FDFLLSANVPFIKIGSGD 92 (335)
Q Consensus 26 ~~~~~~~~~~-~~~~~~~~~e--l~~e~~~~L~~~~~~~Gi~--f~stp-fd~---~s----vd~l~~l~v~~~KIaS~d 92 (335)
||..|-..|. .+..+.+-+. ++.++..+|.+..++.+.. ++.-- +.+ .. +..+.+.|++.+-|+---
T Consensus 53 PfSDPvADGP~Iq~A~~rAL~~g~t~~~~lel~~~~r~~~~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGlivpDLP 132 (265)
T COG0159 53 PFSDPVADGPTIQAAHLRALAAGVTLEDTLELVEEIRAKGVKVPIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLVPDLP 132 (265)
T ss_pred CCCCcCccCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCCCCEEEEEeccHHHHhhHHHHHHHHHHcCCCEEEeCCCC
Confidence 5555543342 3344444444 7888888888888865443 33322 222 11 345667899999998765
Q ss_pred CCCHH-HHHHHHhcCC-cEEEeCCCCCCHHHHHHHHHHHHhcCCCCceeecccCCCCCCCCcccccCceEEeeecCCCCC
Q psy17999 93 SNNIP-LIKYAASKQK-PLIISTGMLPSIEHVDNIYTTVKQYHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYPT 170 (335)
Q Consensus 93 ~~n~~-LL~~~a~~gk-PvilStG~~~tl~Ei~~Av~~i~~g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~s~YP~ 170 (335)
...-. +.+.+.+.|. ||.|-+.-+ +.+-++..++. .. ..+.|+|-+++
T Consensus 133 ~ee~~~~~~~~~~~gi~~I~lvaPtt-~~~rl~~i~~~----a~-------------------------GFiY~vs~~Gv 182 (265)
T COG0159 133 PEESDELLKAAEKHGIDPIFLVAPTT-PDERLKKIAEA----AS-------------------------GFIYYVSRMGV 182 (265)
T ss_pred hHHHHHHHHHHHHcCCcEEEEeCCCC-CHHHHHHHHHh----CC-------------------------CcEEEEecccc
Confidence 55544 5555555675 677777776 66666655442 11 12345555553
Q ss_pred Cc-cCC----CchHHHHHHHHCCCCCe--ecCCCCCChHHHHHHHHcCCc-------EEEeccCCCCCCCCCCCCCCCCH
Q psy17999 171 PY-HDI----NLNVIHTLRSRYPDIPI--GYSGHENGVHVCYAAVAMGAQ-------IIEKHFTLDKSWKGSDHASSLTP 236 (335)
Q Consensus 171 ~~-~~~----nL~~i~~L~~~fp~~pV--G~SdHt~g~~~~~aAvalGA~-------vIEkH~tld~~~~G~Dh~~Sl~p 236 (335)
-- +.. =-..+..+|+.. ++|| ||.=-+.....-++.+|-|+- +||+|.+ .-..
T Consensus 183 TG~~~~~~~~~~~~v~~vr~~~-~~Pv~vGFGIs~~e~~~~v~~~ADGVIVGSAiV~~i~~~~~------------~~~~ 249 (265)
T COG0159 183 TGARNPVSADVKELVKRVRKYT-DVPVLVGFGISSPEQAAQVAEAADGVIVGSAIVKIIEEGLD------------EEAL 249 (265)
T ss_pred cCCCcccchhHHHHHHHHHHhc-CCCeEEecCcCCHHHHHHHHHhCCeEEEcHHHHHHHHhccc------------hhhH
Confidence 22 111 134567888876 8997 674333333333444466653 6676543 1234
Q ss_pred HHHHHHHHHHHHH
Q psy17999 237 PELKALVTGIRDI 249 (335)
Q Consensus 237 ~el~~lv~~ir~~ 249 (335)
++++.+++.++..
T Consensus 250 ~~~~~l~~~l~~~ 262 (265)
T COG0159 250 EELRALVKELKAA 262 (265)
T ss_pred HHHHHHHHHHHHH
Confidence 5777777776653
No 236
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=84.41 E-value=7.5 Score=39.74 Aligned_cols=140 Identities=17% Similarity=0.174 Sum_probs=93.2
Q ss_pred CHHHHHHHHHHHHHcCCceE----------eccCChhhHHHHHhCCCCEEEEcCCCCCCHHHHHHHHhcCCcEEEeCCCC
Q psy17999 47 SQEEYVMLQQCADQVDIMFT----------ASAMDQVSFDFLLSANVPFIKIGSGDSNNIPLIKYAASKQKPLIISTGML 116 (335)
Q Consensus 47 ~~e~~~~L~~~~~~~Gi~f~----------stpfd~~svd~l~~l~v~~~KIaS~d~~n~~LL~~~a~~gkPvilStG~~ 116 (335)
=.+.|.+|.+.|+++++.+. ....|..++..|.- +-.|.+++-+.|.-|++.-.++
T Consensus 204 lye~fD~lLeI~~~yDVtlSLGDglRPG~i~Da~D~aQi~El~~--------------lgeL~~RA~e~gVQvMVEGPGH 269 (431)
T PRK13352 204 LYEHFDYLLEILKEYDVTLSLGDGLRPGCIADATDRAQIQELIT--------------LGELVKRAREAGVQVMVEGPGH 269 (431)
T ss_pred hHHHHHHHHHHHHHhCeeeeccCCcCCCccccCCcHHHHHHHHH--------------HHHHHHHHHHcCCeEEEECCCC
Confidence 35789999999999998875 34455555555544 4578888888999999998888
Q ss_pred CCHHHHHHHHHHHHhcCCCCceeecccCCCCCCCCcccccCceEEeeecCCCCCCccCCCchHHHHHHHHCCCCCeecCC
Q psy17999 117 PSIEHVDNIYTTVKQYHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYPTPYHDINLNVIHTLRSRYPDIPIGYSG 196 (335)
Q Consensus 117 ~tl~Ei~~Av~~i~~g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~s~YP~~~~~~nL~~i~~L~~~fp~~pVG~Sd 196 (335)
..+++|..-+...++-+. . + ++ |- |.=+. + ++-.|| |
T Consensus 270 vPl~~I~~nv~l~K~lc~--------~---A----------Pf--------Yv-------LGPLv-----T-DiApGY-D 306 (431)
T PRK13352 270 VPLDQIEANVKLQKRLCH--------G---A----------PF--------YV-------LGPLV-----T-DIAPGY-D 306 (431)
T ss_pred CCHHHHHHHHHHHHHhhC--------C---C----------Cc--------ee-------cCccc-----c-ccCCCc-h
Confidence 899999999998776221 0 0 22 11 11111 2 555677 9
Q ss_pred CCCChHHHHHHHHcCCcEEEeccCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q psy17999 197 HENGVHVCYAAVAMGAQIIEKHFTLDKSWKGSDHASSLTPPELKALVTGIRDIE 250 (335)
Q Consensus 197 Ht~g~~~~~aAvalGA~vIEkH~tld~~~~G~Dh~~Sl~p~el~~lv~~ir~~~ 250 (335)
|..+.--...|.+.||++|= -+|+--.+.-| ++++.++=|-.-|-..
T Consensus 307 HIt~AIGgAiAa~~GAdfLC-YVTPaEHL~LP------~~eDVreGviA~kIAA 353 (431)
T PRK13352 307 HITSAIGGAIAAAAGADFLC-YVTPAEHLGLP------NVEDVREGVIASKIAA 353 (431)
T ss_pred HHHHHHHHHHHHhcCCCeEE-ecChHHHcCCC------CHHHHHHHHHHHHHHH
Confidence 98885555557788999874 35665333333 3666666555555433
No 237
>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=84.34 E-value=17 Score=32.57 Aligned_cols=85 Identities=13% Similarity=0.060 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHcCCceEecc--CChh----hHHHHHhCCCCEEEEcCCCCCCHHHHHHHHhcCCcEEEeCC--------
Q psy17999 49 EEYVMLQQCADQVDIMFTASA--MDQV----SFDFLLSANVPFIKIGSGDSNNIPLIKYAASKQKPLIISTG-------- 114 (335)
Q Consensus 49 e~~~~L~~~~~~~Gi~f~stp--fd~~----svd~l~~l~v~~~KIaS~d~~n~~LL~~~a~~gkPvilStG-------- 114 (335)
..+..+.+.++++|..++... .|.+ .++.+.+.++|.+-|.+.+-...+.++++.+.|.|+|+-..
T Consensus 16 ~~~~g~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~~~~~~~~~~~~~~~~~ipvV~~~~~~~~~~~~ 95 (268)
T cd06289 16 ELAAGLEEVLEEAGYTVFLANSGEDVERQEQLLSTMLEHGVAGIILCPAAGTSPDLLKRLAESGIPVVLVAREVAGAPFD 95 (268)
T ss_pred HHHHHHHHHHHHcCCeEEEecCCCChHHHHHHHHHHHHcCCCEEEEeCCCCccHHHHHHHHhcCCCEEEEeccCCCCCCC
Confidence 345667788999998866432 3333 23445566899999988766566788888888999886521
Q ss_pred ---CCCCHHHHHHHHHHHHh-cCC
Q psy17999 115 ---MLPSIEHVDNIYTTVKQ-YHS 134 (335)
Q Consensus 115 ---~~~tl~Ei~~Av~~i~~-g~~ 134 (335)
.. .......+++.+.+ |..
T Consensus 96 ~v~~d-~~~~~~~~~~~l~~~g~~ 118 (268)
T cd06289 96 YVGPD-NAAGARLATEHLISLGHR 118 (268)
T ss_pred EEeec-chHHHHHHHHHHHHCCCC
Confidence 11 23445667776665 443
No 238
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=84.30 E-value=27 Score=33.59 Aligned_cols=156 Identities=10% Similarity=0.041 Sum_probs=90.5
Q ss_pred hcCCHHHHHHHHHHHHHc--C-CceEeccC--Chhh---HHHHHhCCCCEEEEcCCCC---CCHHHHHH---HHh-cCCc
Q psy17999 44 LEFSQEEYVMLQQCADQV--D-IMFTASAM--DQVS---FDFLLSANVPFIKIGSGDS---NNIPLIKY---AAS-KQKP 108 (335)
Q Consensus 44 ~el~~e~~~~L~~~~~~~--G-i~f~stpf--d~~s---vd~l~~l~v~~~KIaS~d~---~n~~LL~~---~a~-~gkP 108 (335)
..||.++..++.+.+.+. | +++++.+- ..++ ++.+.++|+|.+-+-..-. +.-.++++ +++ ++.|
T Consensus 53 ~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv~~~t~~ai~~a~~a~~~Gadav~~~pP~y~~~s~~~i~~~f~~v~~a~~~p 132 (296)
T TIGR03249 53 FSLTPAEYEQVVEIAVSTAKGKVPVYTGVGGNTSDAIEIARLAEKAGADGYLLLPPYLINGEQEGLYAHVEAVCESTDLG 132 (296)
T ss_pred ccCCHHHHHHHHHHHHHHhCCCCcEEEecCccHHHHHHHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHhccCCC
Confidence 458999999998866553 2 55555442 2222 3455678999877765533 33455554 443 5789
Q ss_pred EEEe--CCCCCCHHHHHHHHHHHHhcCCCCceeecccCCCCCCCCcccccCceEEeeecCCCCCCccCCCchHHHHHHHH
Q psy17999 109 LIIS--TGMLPSIEHVDNIYTTVKQYHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYPTPYHDINLNVIHTLRSR 186 (335)
Q Consensus 109 vilS--tG~~~tl~Ei~~Av~~i~~g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~s~YP~~~~~~nL~~i~~L~~~ 186 (335)
|+|= ||...+.+.+.+.++. .+ +++-+-- ..-|+..+..++++
T Consensus 133 vilYn~~g~~l~~~~~~~La~~----~~-----------------------nvvgiKd--------s~~d~~~~~~~~~~ 177 (296)
T TIGR03249 133 VIVYQRDNAVLNADTLERLADR----CP-----------------------NLVGFKD--------GIGDMEQMIEITQR 177 (296)
T ss_pred EEEEeCCCCCCCHHHHHHHHhh----CC-----------------------CEEEEEe--------CCCCHHHHHHHHHH
Confidence 8886 7766677777765431 12 2222221 13477777778776
Q ss_pred CCCCCeecCCCCCChHHHHHHHHcCCc-EEEeccCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q psy17999 187 YPDIPIGYSGHENGVHVCYAAVAMGAQ-IIEKHFTLDKSWKGSDHASSLTPPELKALVTGIR 247 (335)
Q Consensus 187 fp~~pVG~SdHt~g~~~~~aAvalGA~-vIEkH~tld~~~~G~Dh~~Sl~p~el~~lv~~ir 247 (335)
+++--..|++|.........++.+||+ +|- -...+-|+.+.++.+..+
T Consensus 178 ~~~~~~v~~G~~~~d~~~~~~~~~Ga~G~is-------------~~~n~~P~~~~~~~~~~~ 226 (296)
T TIGR03249 178 LGDRLGYLGGMPTAEVTAPAYLPLGVTSYSS-------------AIFNFIPHIARAFYEALR 226 (296)
T ss_pred cCCCeEEEeCCCcchhhHHHHHhCCCCEEEe-------------cHHHhhHHHHHHHHHHHH
Confidence 642222466764333344456778986 442 123455777777765543
No 239
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=84.29 E-value=6.5 Score=36.38 Aligned_cols=62 Identities=26% Similarity=0.334 Sum_probs=41.7
Q ss_pred chHHHHHHHHCCCCCeecC-----C--CCCC--hHHHHHHHHcCCcEEEeccCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q psy17999 177 LNVIHTLRSRYPDIPIGYS-----G--HENG--VHVCYAAVAMGAQIIEKHFTLDKSWKGSDHASSLTPPELKALVTGIR 247 (335)
Q Consensus 177 L~~i~~L~~~fp~~pVG~S-----d--Ht~g--~~~~~aAvalGA~vIEkH~tld~~~~G~Dh~~Sl~p~el~~lv~~ir 247 (335)
+..|...++ . ++.|.++ . |+.. ......+..+||+.|- + .|..-.++|+++.++++.++
T Consensus 118 ~~~i~~a~~-~-G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~i~----l------~Dt~G~~~P~~v~~li~~l~ 185 (265)
T cd03174 118 EEAIEAAKE-A-GLEVEGSLEDAFGCKTDPEYVLEVAKALEEAGADEIS----L------KDTVGLATPEEVAELVKALR 185 (265)
T ss_pred HHHHHHHHH-C-CCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEE----e------chhcCCcCHHHHHHHHHHHH
Confidence 344555554 4 6776432 3 4444 4566778899999877 2 15566799999999999988
Q ss_pred HHH
Q psy17999 248 DIE 250 (335)
Q Consensus 248 ~~~ 250 (335)
+..
T Consensus 186 ~~~ 188 (265)
T cd03174 186 EAL 188 (265)
T ss_pred HhC
Confidence 643
No 240
>PRK15108 biotin synthase; Provisional
Probab=84.29 E-value=46 Score=32.97 Aligned_cols=168 Identities=10% Similarity=0.049 Sum_probs=94.8
Q ss_pred CHHHHHHHHHHHHHcCCceEecc--CChhhHHHHHhCCCCEEEE------------cCCCC--CCHHHHHHHHhcCCcEE
Q psy17999 47 SQEEYVMLQQCADQVDIMFTASA--MDQVSFDFLLSANVPFIKI------------GSGDS--NNIPLIKYAASKQKPLI 110 (335)
Q Consensus 47 ~~e~~~~L~~~~~~~Gi~f~stp--fd~~svd~l~~l~v~~~KI------------aS~d~--~n~~LL~~~a~~gkPvi 110 (335)
+.+.+..+.+..++.|+....|. .+.+.++.|.+.|++.|=+ -+... .-+..++.+.+.|.++-
T Consensus 109 ~~e~i~~~i~~ik~~~i~v~~s~G~ls~e~l~~LkeAGld~~n~~leT~p~~f~~I~~~~~~~~rl~~i~~a~~~G~~v~ 188 (345)
T PRK15108 109 DMPYLEQMVQGVKAMGLETCMTLGTLSESQAQRLANAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLEKVRDAGIKVC 188 (345)
T ss_pred hHHHHHHHHHHHHhCCCEEEEeCCcCCHHHHHHHHHcCCCEEeeccccChHhcCCCCCCCCHHHHHHHHHHHHHcCCcee
Confidence 34667778888888888876665 7888889999999995543 11110 13445566666677542
Q ss_pred E--eCCCCCCHHHHHHHHHHHHh-cCCCCceeecccCCCCCCCCcccccCceEEeeecCCCC-CCcc-------CCCchH
Q psy17999 111 I--STGMLPSIEHVDNIYTTVKQ-YHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYP-TPYH-------DINLNV 179 (335)
Q Consensus 111 l--StG~~~tl~Ei~~Av~~i~~-g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~s~YP-~~~~-------~~nL~~ 179 (335)
. =.|+..|.+|+.+-+..++. ......| .+..+ ...| ||.+ .-.|+.
T Consensus 189 sg~i~GlgEt~ed~v~~~~~l~~l~~~~~~i-------------------p~~~~---~P~~gTpl~~~~~~~~~e~lr~ 246 (345)
T PRK15108 189 SGGIVGLGETVKDRAGLLLQLANLPTPPESV-------------------PINML---VKVKGTPLADNDDVDAFDFIRT 246 (345)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHhccCCCCEE-------------------EeCCc---cCCCCCCCCCCCCCCHHHHHHH
Confidence 1 13555677777777777765 2110000 11111 1111 2222 223677
Q ss_pred HHHHHHHCCCCCeecCC--CCCChHHHHHHHHcCCcEE--EeccCCCCCCCCCCCCCCCCHHHHHHHHHH
Q psy17999 180 IHTLRSRYPDIPIGYSG--HENGVHVCYAAVAMGAQII--EKHFTLDKSWKGSDHASSLTPPELKALVTG 245 (335)
Q Consensus 180 i~~L~~~fp~~pVG~Sd--Ht~g~~~~~aAvalGA~vI--EkH~tld~~~~G~Dh~~Sl~p~el~~lv~~ 245 (335)
|...|=..|+.-+-.++ -+.+......|...||+.| +-.+- +.+ .+++++..+|+++
T Consensus 247 iAi~Rl~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~~~g~~~l---tt~------g~~~~~~~~~i~~ 307 (345)
T PRK15108 247 IAVARIMMPTSYVRLSAGREQMNEQTQAMCFMAGANSIFYGCKLL---TTP------NPEEDKDLQLFRK 307 (345)
T ss_pred HHHHHHHCCCceeeecccHhHhChhhHHHHHHcCCcEEEECCccc---cCC------CCCHHHHHHHHHH
Confidence 77777667774443322 1345566778999999944 32210 111 3567788777774
No 241
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=84.19 E-value=10 Score=39.49 Aligned_cols=172 Identities=19% Similarity=0.166 Sum_probs=89.7
Q ss_pred hcCCHHHHHHHHHHHHHcCCceEec------cCChhhHHHHHhCCCCEEEEcCCCCCCHHHHHHHHhc----CCc-EEEe
Q psy17999 44 LEFSQEEYVMLQQCADQVDIMFTAS------AMDQVSFDFLLSANVPFIKIGSGDSNNIPLIKYAASK----QKP-LIIS 112 (335)
Q Consensus 44 ~el~~e~~~~L~~~~~~~Gi~f~st------pfd~~svd~l~~l~v~~~KIaS~d~~n~~LL~~~a~~----gkP-vilS 112 (335)
..|+.++-.++.+.-.+.|++.+-- +-|.+.+..+.+. ...-+|.+.--.+...++...+. +.+ |-+.
T Consensus 18 ~~~s~e~K~~ia~~L~~~GV~~IEvG~p~~s~~d~e~v~~i~~~-~~~~~i~al~r~~~~did~a~~al~~~~~~~v~i~ 96 (494)
T TIGR00973 18 ASLTVEEKLQIALALERLGVDIIEAGFPVSSPGDFEAVQRIART-VKNPRVCGLARCVEKDIDAAAEALKPAEKFRIHTF 96 (494)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHHHHh-CCCCEEEEEcCCCHHhHHHHHHhccccCCCEEEEE
Confidence 3578888888888888888887642 2233334444332 22235555555566677766654 233 2222
Q ss_pred CCCC---------CCHHHH----HHHHHHHHh-cCCCCceeecccCCCCCCCCccccc------CceEEeee-cCCCCCC
Q psy17999 113 TGML---------PSIEHV----DNIYTTVKQ-YHSNLSILHCVSAYPTPYPTVKQYH------SNLSILHC-VSAYPTP 171 (335)
Q Consensus 113 tG~~---------~tl~Ei----~~Av~~i~~-g~~~~~~~~c~~g~~~~~~~~~~~~------~~l~llHC-~s~YP~~ 171 (335)
...| .|.+|+ .+++++.++ +.. -.+-|+-+.++...-+-+.- .--.|--| |..+=+|
T Consensus 97 ~~~S~~h~~~~l~~s~~e~l~~~~~~v~~a~~~g~~--v~f~~Ed~~r~d~~~l~~~~~~~~~~Ga~~i~l~DTvG~~~P 174 (494)
T TIGR00973 97 IATSPIHLEHKLKMTRDEVLERAVGMVKYAKNFTDD--VEFSCEDAGRTEIPFLARIVEAAINAGATTINIPDTVGYALP 174 (494)
T ss_pred EccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCe--EEEEcCCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCH
Confidence 2221 123333 345555555 322 23345555544311111110 01122222 2233344
Q ss_pred ccCCCchHHHHHHHHCCC---CCeecCCCCC-C--hHHHHHHHHcCCcEEEeccCCC
Q psy17999 172 YHDINLNVIHTLRSRYPD---IPIGYSGHEN-G--VHVCYAAVAMGAQIIEKHFTLD 222 (335)
Q Consensus 172 ~~~~nL~~i~~L~~~fp~---~pVG~SdHt~-g--~~~~~aAvalGA~vIEkH~tld 222 (335)
.+-.+ .+..|++.+|+ +++++=.|.. | .+-+++|+..||+.|+ .|+.
T Consensus 175 ~~~~~--~i~~l~~~~~~~~~v~l~~H~HND~GlAvANalaAv~aGa~~vd--~tv~ 227 (494)
T TIGR00973 175 AEYGN--LIKGLRENVPNIDKAILSVHCHNDLGLAVANSLAAVQNGARQVE--CTIN 227 (494)
T ss_pred HHHHH--HHHHHHHhhccccCceEEEEeCCCCChHHHHHHHHHHhCCCEEE--EEee
Confidence 33233 36788888873 6788877754 4 6667999999999987 4543
No 242
>cd04246 AAK_AK-DapG-like AAK_AK-DapG-like: Amino Acid Kinase Superfamily (AAK), AK-DapG-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional enzymes found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species, as well as, the catalytic AK domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related isoenzymes. In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. The role of the AKI isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulati
Probab=84.17 E-value=35 Score=31.56 Aligned_cols=39 Identities=18% Similarity=0.250 Sum_probs=27.0
Q ss_pred EEEEcCCCCCCHHHHHHHHhc--------CCcEEEeCCCCCCHHHHH
Q psy17999 85 FIKIGSGDSNNIPLIKYAASK--------QKPLIISTGMLPSIEHVD 123 (335)
Q Consensus 85 ~~KIaS~d~~n~~LL~~~a~~--------gkPvilStG~~~tl~Ei~ 123 (335)
.+|+|+.-+.|.++++.+++. .+|||++.|+.....+..
T Consensus 3 ViK~GGs~l~~~~~~~~~~~~i~~l~~~g~~~viV~sg~g~~~~~ll 49 (239)
T cd04246 3 VQKFGGTSVADIERIKRVAERIKKAVKKGYQVVVVVSAMGGTTDELI 49 (239)
T ss_pred EEEECccccCCHHHHHHHHHHHHHHHHcCCCEEEEECCCCchHHHHH
Confidence 589999999998887776642 357777876443554443
No 243
>COG3684 LacD Tagatose-1,6-bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=84.03 E-value=11 Score=36.54 Aligned_cols=95 Identities=9% Similarity=-0.008 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHcCCceEeccC--Chh-----------------hHHHHHhCCCCEEEEcCCCCC---CHHHHHHHH---
Q psy17999 49 EEYVMLQQCADQVDIMFTASAM--DQV-----------------SFDFLLSANVPFIKIGSGDSN---NIPLIKYAA--- 103 (335)
Q Consensus 49 e~~~~L~~~~~~~Gi~f~stpf--d~~-----------------svd~l~~l~v~~~KIaS~d~~---n~~LL~~~a--- 103 (335)
.-++++-..|+..||.|+..|- |+. +...+.+-|+|.+|+.=.-.. ..+++.+.-
T Consensus 147 a~ierigsec~aedi~f~lE~ltyd~~~~d~~eyak~kp~kV~~a~k~fsd~GadvlKvevPvyveGe~~ea~~~f~~~~ 226 (306)
T COG3684 147 AYIERIGSECHAEDLPFFLEPLTYDPRIGDKEEYAKRKPQKVIEAMKEFSDSGADVLKVEVPVYVEGEQEEAAAAFQRQN 226 (306)
T ss_pred HHHHHHHHHhhhcCCceeEeeeecCCCCCChHHHHhhchHHHHHHHHHhccCCCceEEeecceeccCccHHHHHHHHHhh
Confidence 4467778889999999999873 221 122334458999998643211 233333322
Q ss_pred -hcCCc-EEEeCCCCCCHHHHHHHHHHHHhcCCCCceeecccCCCC
Q psy17999 104 -SKQKP-LIISTGMLPSIEHVDNIYTTVKQYHSNLSILHCVSAYPT 147 (335)
Q Consensus 104 -~~gkP-vilStG~~~tl~Ei~~Av~~i~~g~~~~~~~~c~~g~~~ 147 (335)
.+..| |+||.|.+ -+-...++.+-...+. +=+||-|.+=.
T Consensus 227 ~~~~lP~i~LSAGV~--~klF~~tv~fA~eaGA--sGvL~GRAtWa 268 (306)
T COG3684 227 DHINLPWIYLSAGVS--AKLFQRTVRFAMEAGA--SGVLAGRATWA 268 (306)
T ss_pred cCCCCCeEEEecCcc--HHHhHHHHHHHHHcCC--ceeEechhhhh
Confidence 24778 77888865 5666777776655222 34788887654
No 244
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=84.00 E-value=16 Score=35.76 Aligned_cols=90 Identities=18% Similarity=0.165 Sum_probs=59.5
Q ss_pred cCCcEEEeCCCCCCHHHHHHHHHHHHh-cCCCCceeecccCCCCCCCCcccccCceEEeeecCCCCCCccCCC-------
Q psy17999 105 KQKPLIISTGMLPSIEHVDNIYTTVKQ-YHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYPTPYHDIN------- 176 (335)
Q Consensus 105 ~gkPvilStG~~~tl~Ei~~Av~~i~~-g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~s~YP~~~~~~n------- 176 (335)
.++|||+|...+ +.+||.++++.+.. | . +..=|||.+ .|.......
T Consensus 98 ~~~pvi~si~g~-~~~~~~~~a~~~~~~g-a-----------------------d~iElN~s~-~~~~~~~~g~~~~~~~ 151 (325)
T cd04739 98 VSIPVIASLNGV-SAGGWVDYARQIEEAG-A-----------------------DALELNIYA-LPTDPDISGAEVEQRY 151 (325)
T ss_pred cCCeEEEEeCCC-CHHHHHHHHHHHHhcC-C-----------------------CEEEEeCCC-CCCCCCcccchHHHHH
Confidence 378999999888 99999999998876 4 2 555666532 122221111
Q ss_pred chHHHHHHHHCCCCCee--cCCCCCC-hHHHHHHHHcCCcEEEeccCC
Q psy17999 177 LNVIHTLRSRYPDIPIG--YSGHENG-VHVCYAAVAMGAQIIEKHFTL 221 (335)
Q Consensus 177 L~~i~~L~~~fp~~pVG--~SdHt~g-~~~~~aAvalGA~vIEkH~tl 221 (335)
...+..+++.. ++||. .+.+... ...+.++...||+-|--|-|.
T Consensus 152 ~eiv~~v~~~~-~iPv~vKl~p~~~~~~~~a~~l~~~Gadgi~~~nt~ 198 (325)
T cd04739 152 LDILRAVKSAV-TIPVAVKLSPFFSALAHMAKQLDAAGADGLVLFNRF 198 (325)
T ss_pred HHHHHHHHhcc-CCCEEEEcCCCccCHHHHHHHHHHcCCCeEEEEcCc
Confidence 35567788777 78986 3544323 456677889999966666653
No 245
>PRK02227 hypothetical protein; Provisional
Probab=83.98 E-value=31 Score=32.81 Aligned_cols=154 Identities=17% Similarity=0.188 Sum_probs=94.6
Q ss_pred ceEeccCChhhHHHHHhCCCCEEEE-----cCCCCCCHHHHHHHHhc---CCcEEEeCCCC-CCHHHHHHHHHHHHh-cC
Q psy17999 64 MFTASAMDQVSFDFLLSANVPFIKI-----GSGDSNNIPLIKYAASK---QKPLIISTGML-PSIEHVDNIYTTVKQ-YH 133 (335)
Q Consensus 64 ~f~stpfd~~svd~l~~l~v~~~KI-----aS~d~~n~~LL~~~a~~---gkPvilStG~~-~tl~Ei~~Av~~i~~-g~ 133 (335)
.++.||-+.+-+..+..-|+|+|=+ ||=--+....++++-+. .+||---.|-. ....++..++.-... |-
T Consensus 2 ~lLvSvr~~eEA~~Al~~GaDiIDvK~P~~GaLGA~~p~vir~Iv~~~~~~~pvSAtiGD~p~~p~~~~~aa~~~a~~Gv 81 (238)
T PRK02227 2 RLLVSVRNLEEALEALAGGADIIDVKNPKEGSLGANFPWVIREIVAAVPGRKPVSATIGDVPYKPGTISLAALGAAATGA 81 (238)
T ss_pred ceeeccCCHHHHHHHHhcCCCEEEccCCCCCCCCCCCHHHHHHHHHHhCCCCCceeeccCCCCCchHHHHHHHHHHhhCC
Confidence 4678899988888888899999744 33344566666666553 47777777732 356778877765544 43
Q ss_pred CCCceeecccCCCCCCCCcccccCceEEeeecCCCCCCccCCCchHHH----HHHHHCCC---CCeecCCCC-----CCh
Q psy17999 134 SNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYPTPYHDINLNVIH----TLRSRYPD---IPIGYSGHE-----NGV 201 (335)
Q Consensus 134 ~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~s~YP~~~~~~nL~~i~----~L~~~fp~---~pVG~SdHt-----~g~ 201 (335)
..+ ++.+ |+.....-.+..|. .++...++ ++|+|+||. ...
T Consensus 82 DyV---------------------KvGl------~~~~~~~~~~~~~~~v~~a~~~~~~~~~vVav~yaD~~r~~~~~~~ 134 (238)
T PRK02227 82 DYV---------------------KVGL------YGGKTAEEAVEVMKAVVRAVKDLDPGKIVVAAGYADAHRVGSVSPL 134 (238)
T ss_pred CEE---------------------EEcC------CCCCcHHHHHHHHHHHHHhhhhcCCCCeEEEEEecccccccCCChH
Confidence 211 3333 33333222233333 23333333 456999986 346
Q ss_pred HHHHHHHHcCCc--EEEeccCCCCCCCC-CCCCCCCCHHHHHHHHHHHHHHH
Q psy17999 202 HVCYAAVAMGAQ--IIEKHFTLDKSWKG-SDHASSLTPPELKALVTGIRDIE 250 (335)
Q Consensus 202 ~~~~aAvalGA~--vIEkH~tld~~~~G-~Dh~~Sl~p~el~~lv~~ir~~~ 250 (335)
.++..|...|+. +|- |-+|+... .|| |++++|..+|+.+|..-
T Consensus 135 ~l~~~a~~aGf~g~MlD---Ta~Kdg~~Lfd~---l~~~~L~~Fv~~ar~~G 180 (238)
T PRK02227 135 SLPAIAADAGFDGAMLD---TAIKDGKSLFDH---MDEEELAEFVAEARSHG 180 (238)
T ss_pred HHHHHHHHcCCCEEEEe---cccCCCcchHhh---CCHHHHHHHHHHHHHcc
Confidence 667778889998 665 33333211 355 88999999999999754
No 246
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=83.70 E-value=9.4 Score=32.59 Aligned_cols=77 Identities=16% Similarity=0.155 Sum_probs=49.5
Q ss_pred HHHHHHHHHHc--CCceEeccCChhhHHH--HHhCCCCEEEEcCCCCCC---------HHHHHHH-HhcCCcEEEeCCCC
Q psy17999 51 YVMLQQCADQV--DIMFTASAMDQVSFDF--LLSANVPFIKIGSGDSNN---------IPLIKYA-ASKQKPLIISTGML 116 (335)
Q Consensus 51 ~~~L~~~~~~~--Gi~f~stpfd~~svd~--l~~l~v~~~KIaS~d~~n---------~~LL~~~-a~~gkPvilStG~~ 116 (335)
..++.+..++. ++.++...-.....+. +.+.+++++.+.....+. .+.+..+ ...++||+.+-|..
T Consensus 101 ~~~~~~~i~~~~~~~~v~~~~~~~~~~~~~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pi~~~GGi~ 180 (200)
T cd04722 101 DLELIRELREAVPDVKVVVKLSPTGELAAAAAEEAGVDEVGLGNGGGGGGGRDAVPIADLLLILAKRGSKVPVIAGGGIN 180 (200)
T ss_pred HHHHHHHHHHhcCCceEEEEECCCCccchhhHHHcCCCEEEEcCCcCCCCCccCchhHHHHHHHHHhcCCCCEEEECCCC
Confidence 44444444444 7877777644333333 578899999997765532 1334333 34689999999999
Q ss_pred CCHHHHHHHHHH
Q psy17999 117 PSIEHVDNIYTT 128 (335)
Q Consensus 117 ~tl~Ei~~Av~~ 128 (335)
+.+.+.++++.
T Consensus 181 -~~~~~~~~~~~ 191 (200)
T cd04722 181 -DPEDAAEALAL 191 (200)
T ss_pred -CHHHHHHHHHh
Confidence 88888877653
No 247
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=83.64 E-value=24 Score=34.40 Aligned_cols=67 Identities=12% Similarity=0.093 Sum_probs=54.4
Q ss_pred HHHHHHHHcCCceEeccCChhhHHHHHhCCCCEEEEcCCCCCCHHHHHHHHhcCCcEEEeCCCCCCHHHHHHHHHHHH
Q psy17999 53 MLQQCADQVDIMFTASAMDQVSFDFLLSANVPFIKIGSGDSNNIPLIKYAASKQKPLIISTGMLPSIEHVDNIYTTVK 130 (335)
Q Consensus 53 ~L~~~~~~~Gi~f~stpfd~~svd~l~~l~v~~~KIaS~d~~n~~LL~~~a~~gkPvilStG~~~tl~Ei~~Av~~i~ 130 (335)
.|++.-++.++.++..+||.-|+..+++.|.+++.+.|..+.+ +..|.| ..|.- +++|+...++.|.
T Consensus 8 ~lr~ll~~~~~l~~p~~~Da~SAri~e~~Gf~ai~~Sg~~~a~-------~~lG~P---D~g~l-~~~e~~~~~~~I~ 74 (292)
T PRK11320 8 RFRAALAAEKPLQIVGTINAYHALLAERAGFKAIYLSGGGVAA-------ASLGLP---DLGIT-TLDDVLIDVRRIT 74 (292)
T ss_pred HHHHHHcCCCcEEecCCCCHHHHHHHHHcCCCEEEeCHHHHHh-------HhcCCC---CCCCC-CHHHHHHHHHHHH
Confidence 4666667778999999999999999999999999999976543 245888 55766 8999988887665
No 248
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=83.62 E-value=27 Score=34.03 Aligned_cols=179 Identities=15% Similarity=0.129 Sum_probs=93.1
Q ss_pred CCHHHHHHHHHHHHHcC--CceE----------e--ccC-ChhhHHHHHhCCCCEEEEcCCCCC----------------
Q psy17999 46 FSQEEYVMLQQCADQVD--IMFT----------A--SAM-DQVSFDFLLSANVPFIKIGSGDSN---------------- 94 (335)
Q Consensus 46 l~~e~~~~L~~~~~~~G--i~f~----------s--tpf-d~~svd~l~~l~v~~~KIaS~d~~---------------- 94 (335)
++.+.+.++.+..++.+ +.+. + .-+ +.+.+..|.+.|++.+--...+..
T Consensus 102 ~~~~~~~~li~~Ik~~~~~i~~~~~s~~ei~~~~~~~g~~~~e~l~~Lk~aG~~~~~~~g~E~~~~~~~~~~~~~~~s~~ 181 (340)
T TIGR03699 102 LGLDYYEDLFRAIKARFPHIHIHSFSPVEIVYIAKKEGLSLREVLERLKEAGLDSIPGGGAEILSDRVRKIISPKKISSE 181 (340)
T ss_pred CCHHHHHHHHHHHHHHCCCcCCCCCCHHHHHHHhccCCCCHHHHHHHHHHcCCCcCCCCcccccCHHHHHhhCCCCCCHH
Confidence 34556667777777665 3321 1 111 266677788888776532111111
Q ss_pred -CHHHHHHHHhcCCcEE--EeCCCCCCHHHHHHHHHHHHh-cCCCCceeecccCCCCCCCCcccccCceEEee-ecC--C
Q psy17999 95 -NIPLIKYAASKQKPLI--ISTGMLPSIEHVDNIYTTVKQ-YHSNLSILHCVSAYPTPYPTVKQYHSNLSILH-CVS--A 167 (335)
Q Consensus 95 -n~~LL~~~a~~gkPvi--lStG~~~tl~Ei~~Av~~i~~-g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llH-C~s--~ 167 (335)
.+..++.+-+.|.++- +-.|+.-|.+++.+.+..+++ +.....+ .. =+ ++-+++ .+- .
T Consensus 182 ~~l~~i~~a~~~Gi~v~~~~iiGlgEt~ed~~~~l~~l~~l~~~~~~~--~~-fI------------P~~f~p~~tpl~~ 246 (340)
T TIGR03699 182 EWLEVMETAHKLGLPTTATMMFGHVETLEDRIEHLERIRELQDKTGGF--TA-FI------------PWTFQPGNTELGK 246 (340)
T ss_pred HHHHHHHHHHHcCCCccceeEeeCCCCHHHHHHHHHHHHHhchhhCCe--eE-EE------------eecccCCCCcccC
Confidence 1344455556677643 123545578888888888776 3220000 00 00 000011 110 0
Q ss_pred CCCCccCCCchHHHHHHHHCCCCC-e-ecCCCCCChHHHHHHHHcCCc-----EEEeccCCCCCCCCCCCCCCCCHHHHH
Q psy17999 168 YPTPYHDINLNVIHTLRSRYPDIP-I-GYSGHENGVHVCYAAVAMGAQ-----IIEKHFTLDKSWKGSDHASSLTPPELK 240 (335)
Q Consensus 168 YP~~~~~~nL~~i~~L~~~fp~~p-V-G~SdHt~g~~~~~aAvalGA~-----vIEkH~tld~~~~G~Dh~~Sl~p~el~ 240 (335)
.|.+...-.|+.|...|-.+|+.+ | |+- ...|......|...||+ +++-|+.....++ + .++++++.
T Consensus 247 ~~~~~~~e~l~~iA~~Rl~lp~~~~i~~~~-~~~g~~~~~~~l~~Gan~~~g~~~~~~~~~~~g~~---~--~~~~~~~~ 320 (340)
T TIGR03699 247 KRPATSTEYLKVLAISRIFLDNIPNIQASW-VTQGKEVGQLALHFGANDFGSTMLEENVVAAAGAT---H--RASREEII 320 (340)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCCCcccCCc-cccChHHHHHHHhcCCccCCCccccccccccCCCC---C--CCCHHHHH
Confidence 011112235777777787788643 3 322 34566667778888998 5655555544433 2 36778877
Q ss_pred HHHHH
Q psy17999 241 ALVTG 245 (335)
Q Consensus 241 ~lv~~ 245 (335)
+|+++
T Consensus 321 ~~i~~ 325 (340)
T TIGR03699 321 RIIRE 325 (340)
T ss_pred HHHHH
Confidence 77765
No 249
>PRK08445 hypothetical protein; Provisional
Probab=83.54 E-value=41 Score=33.39 Aligned_cols=176 Identities=15% Similarity=0.176 Sum_probs=98.2
Q ss_pred cCCHHHHHHHHHHHHHcC--CceEe--c----------cCC-hhhHHHHHhCCCCEEE-----EcCC----CC-------
Q psy17999 45 EFSQEEYVMLQQCADQVD--IMFTA--S----------AMD-QVSFDFLLSANVPFIK-----IGSG----DS------- 93 (335)
Q Consensus 45 el~~e~~~~L~~~~~~~G--i~f~s--t----------pfd-~~svd~l~~l~v~~~K-----IaS~----d~------- 93 (335)
.++.+.+.++.+..++.. +.+.+ . -.+ ++.+..|.+.|++.|- +.+. .+
T Consensus 102 ~~~~e~~~~l~~~Ik~~~p~i~~~a~s~~ei~~~a~~~~~~~~e~L~~LkeAGl~~~~g~glE~~~d~v~~~~~pk~~t~ 181 (348)
T PRK08445 102 KLKIEWYENLVSHIAQKYPTITIHGFSAVEIDYIAKISKISIKEVLERLQAKGLSSIPGAGAEILSDRVRDIIAPKKLDS 181 (348)
T ss_pred CCCHHHHHHHHHHHHHHCCCcEEEEccHHHHHHHHHHhCCCHHHHHHHHHHcCCCCCCCCceeeCCHHHHHhhCCCCCCH
Confidence 356677788877777754 44432 1 112 5677778888877432 1111 01
Q ss_pred -CCHHHHHHHHhcCCcEEEe--CCCCCCHHHHHHHHHHHHh-cCCCCceeecccCCCCCCCCcccccCceEEeeecCCCC
Q psy17999 94 -NNIPLIKYAASKQKPLIIS--TGMLPSIEHVDNIYTTVKQ-YHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYP 169 (335)
Q Consensus 94 -~n~~LL~~~a~~gkPvilS--tG~~~tl~Ei~~Av~~i~~-g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~s~YP 169 (335)
+++..++.+-+.|.++--. .|+.-|.++..+-+..+++ .... -|. +..++.=...-.
T Consensus 182 ~~~i~~i~~a~~~Gi~~~sg~i~G~~Et~edr~~~l~~lreLq~~~-------~g~------------~~fi~~~~~p~~ 242 (348)
T PRK08445 182 DRWLEVHRQAHLIGMKSTATMMFGTVENDEEIIEHWERIRDLQDET-------GGF------------RAFILWSFQPDN 242 (348)
T ss_pred HHHHHHHHHHHHcCCeeeeEEEecCCCCHHHHHHHHHHHHHHHHHh-------CCe------------eEEeccccCCCC
Confidence 2355666666778775332 4444578888777777765 3220 000 111100000001
Q ss_pred CCc-----------cCCCchHHHHHHHHCCC---CCeecCCCCCChHHHHHHHHcCCc-----EEEeccCCCCCCCCCCC
Q psy17999 170 TPY-----------HDINLNVIHTLRSRYPD---IPIGYSGHENGVHVCYAAVAMGAQ-----IIEKHFTLDKSWKGSDH 230 (335)
Q Consensus 170 ~~~-----------~~~nL~~i~~L~~~fp~---~pVG~SdHt~g~~~~~aAvalGA~-----vIEkH~tld~~~~G~Dh 230 (335)
||. ..-.|+.|...|=.+|+ ++.++ .+.|..++..|...||+ ++|-+++-.-. ..+
T Consensus 243 tpl~~~~~~~~~~~~~e~Lr~iAv~Rl~l~~~~~i~a~~--~~~g~~~~~~~L~~Gand~~gt~~~e~i~~~ag---~~~ 317 (348)
T PRK08445 243 TPLKEEIPEIKKQSSNRYLRLLAVSRLFLDNFKNIQSSW--VTQGSYIGQLALLFGANDLGSTMMEENVVKAAG---ASF 317 (348)
T ss_pred CcccccCCCCCCCCHHHHHHHHHHHHHhCCCCCCccCCC--cccCHHHHHHHHhcCCccCccccccccchhccC---CCC
Confidence 121 12335666655655565 34444 46788888889999997 88888776533 334
Q ss_pred CCCCCHHHHHHHHHHH
Q psy17999 231 ASSLTPPELKALVTGI 246 (335)
Q Consensus 231 ~~Sl~p~el~~lv~~i 246 (335)
.++++|+..+++++
T Consensus 318 --~~~~~~~~~~i~~~ 331 (348)
T PRK08445 318 --RMNQAEMIELIKDI 331 (348)
T ss_pred --CCCHHHHHHHHHHc
Confidence 47889888887764
No 250
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=83.49 E-value=15 Score=37.74 Aligned_cols=122 Identities=17% Similarity=0.131 Sum_probs=69.6
Q ss_pred cCChhhHHHHHhCCCCEEEEcCCC---CCCHHHHHHHHhc--CCcEEEeCCCCCCHHHHHHHHHHHHhcCCCCceeeccc
Q psy17999 69 AMDQVSFDFLLSANVPFIKIGSGD---SNNIPLIKYAASK--QKPLIISTGMLPSIEHVDNIYTTVKQYHSNLSILHCVS 143 (335)
Q Consensus 69 pfd~~svd~l~~l~v~~~KIaS~d---~~n~~LL~~~a~~--gkPvilStG~~~tl~Ei~~Av~~i~~g~~~~~~~~c~~ 143 (335)
+.+.+-++.|.+.|++++-|-+.+ .+-+..++++.+. +.||+..+.. |.++...+++. |.. .+-.
T Consensus 223 ~~~~~r~~~L~~aG~d~I~vd~a~g~~~~~~~~i~~i~~~~~~~~vi~G~v~--t~~~a~~l~~a---Gad---~i~v-- 292 (450)
T TIGR01302 223 EFDKERAEALVKAGVDVIVIDSSHGHSIYVIDSIKEIKKTYPDLDIIAGNVA--TAEQAKALIDA---GAD---GLRV-- 292 (450)
T ss_pred hhHHHHHHHHHHhCCCEEEEECCCCcHhHHHHHHHHHHHhCCCCCEEEEeCC--CHHHHHHHHHh---CCC---EEEE--
Confidence 566677888889999999998844 3344566666665 6899995553 67777776553 432 1100
Q ss_pred CCCCCCCCcccccCceEEeeecCCCCCCccCCCchHHHHH---HHHCCCCCeecCCCCCChHHHHHHHHcCCcE
Q psy17999 144 AYPTPYPTVKQYHSNLSILHCVSAYPTPYHDINLNVIHTL---RSRYPDIPIGYSGHENGVHVCYAAVAMGAQI 214 (335)
Q Consensus 144 g~~~~~~~~~~~~~~l~llHC~s~YP~~~~~~nL~~i~~L---~~~fp~~pVG~SdHt~g~~~~~aAvalGA~v 214 (335)
|+..+ - -|++...+..-...+.++..+ .+.+ ++||.-.+--.-..-..-|.++||+.
T Consensus 293 g~g~G---------~----~~~t~~~~~~g~p~~~~i~~~~~~~~~~-~vpviadGGi~~~~di~kAla~GA~~ 352 (450)
T TIGR01302 293 GIGPG---------S----ICTTRIVAGVGVPQITAVYDVAEYAAQS-GIPVIADGGIRYSGDIVKALAAGADA 352 (450)
T ss_pred CCCCC---------c----CCccceecCCCccHHHHHHHHHHHHhhc-CCeEEEeCCCCCHHHHHHHHHcCCCE
Confidence 11000 0 044422222222233444444 3346 78886544444344455689999983
No 251
>PRK05926 hypothetical protein; Provisional
Probab=83.44 E-value=17 Score=36.42 Aligned_cols=183 Identities=15% Similarity=0.034 Sum_probs=96.7
Q ss_pred CCHHHHHHHHHHHHHc--CCceE-ecc------------CChhhHHHHHhCCCCEEEEcCCCCCC---------------
Q psy17999 46 FSQEEYVMLQQCADQV--DIMFT-ASA------------MDQVSFDFLLSANVPFIKIGSGDSNN--------------- 95 (335)
Q Consensus 46 l~~e~~~~L~~~~~~~--Gi~f~-stp------------fd~~svd~l~~l~v~~~KIaS~d~~n--------------- 95 (335)
++.+.+.++.+..++. +|..- +|+ -+.+.+..|.+.|++.|--+..++.+
T Consensus 128 ~~~e~~~e~i~~Ik~~~p~i~i~a~s~~Ei~~~~~~~~~~~~e~l~~LkeAGl~~~~g~GaEi~~e~~r~~~~p~~~t~~ 207 (370)
T PRK05926 128 CNLAYYEELFSKIKQNFPDLHIKALTAIEYAYLSKLDNLPVKEVLQTLKIAGLDSIPGGGAEILVDEIRETLAPGRLSSQ 207 (370)
T ss_pred CCHHHHHHHHHHHHHhCCCeeEEECCHHHHHHHHhhcCCCHHHHHHHHHHcCcCccCCCCchhcCHHHHHhhCCCCCCHH
Confidence 5667778877777765 56532 222 24566888888888877654222222
Q ss_pred --HHHHHHHHhcCCcEEE--eCCCCCCHHHHHHHHHHHHh-cCCCCceeecccCCCCCCCCcccccCceEEeeecCC-CC
Q psy17999 96 --IPLIKYAASKQKPLII--STGMLPSIEHVDNIYTTVKQ-YHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSA-YP 169 (335)
Q Consensus 96 --~~LL~~~a~~gkPvil--StG~~~tl~Ei~~Av~~i~~-g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~s~-YP 169 (335)
+..++.+-+.|.++-- --|+.-|++|..+-+..++. .-. +|=.+.+= ++...|=.+. +.
T Consensus 208 e~l~~i~~a~~~Gi~~~sgmi~G~gEt~edrv~~l~~Lr~Lq~~--------t~gf~~fI-------p~~f~~~~t~l~~ 272 (370)
T PRK05926 208 GFLEIHKTAHSLGIPSNATMLCYHRETPEDIVTHMSKLRALQDK--------TSGFKNFI-------LLKFASENNALGK 272 (370)
T ss_pred HHHHHHHHHHHcCCcccCceEEeCCCCHHHHHHHHHHHHhcCCc--------cCCeeeeE-------ecccCCCCCcccc
Confidence 2455555555655321 12333466666666666665 211 11110000 1111221111 10
Q ss_pred ------CCccCCCchHHHHHHHHCCCCC-eecCCCCCChHHHHHHHHcCCc-----EEEeccCCCCCCCCCCCCCCCCHH
Q psy17999 170 ------TPYHDINLNVIHTLRSRYPDIP-IGYSGHENGVHVCYAAVAMGAQ-----IIEKHFTLDKSWKGSDHASSLTPP 237 (335)
Q Consensus 170 ------~~~~~~nL~~i~~L~~~fp~~p-VG~SdHt~g~~~~~aAvalGA~-----vIEkH~tld~~~~G~Dh~~Sl~p~ 237 (335)
.....-+|+.+..-|=-++++| |--|-.+.|...++.|...||+ ++|-.++- .-|..+...++++
T Consensus 273 ~~~~~~~~~~~~~lr~~AvaRl~l~n~~~iqa~w~~~G~~~~q~~L~~GanD~ggt~~~e~i~~---~ag~~~~~~~~~~ 349 (370)
T PRK05926 273 RLRKMGSRHSIPPASIIAVARLFLDNFPNIKALWNYLGIEVALHLLSCGANDLSSTHQGEKVFQ---MASSQEPIKMDIE 349 (370)
T ss_pred cccccCCCChHHHHHHHHHHHHhcCCCcccccCchhcCHHHHHHHHhCCCccCccccccchhhh---ccCCCCCCCCCHH
Confidence 0112234555554443333322 1112245688899999999997 66665443 2344566679999
Q ss_pred HHHHHHHHH
Q psy17999 238 ELKALVTGI 246 (335)
Q Consensus 238 el~~lv~~i 246 (335)
+|..+++++
T Consensus 350 ~~~~~i~~~ 358 (370)
T PRK05926 350 GMAHLITQQ 358 (370)
T ss_pred HHHHHHHHc
Confidence 998888764
No 252
>PRK07360 FO synthase subunit 2; Reviewed
Probab=83.38 E-value=29 Score=34.57 Aligned_cols=154 Identities=18% Similarity=0.179 Sum_probs=83.3
Q ss_pred ChhhHHHHHhCCCCEEEEcC--------------CCC---CCHHHHHHHHhcCCcEEEeC---CCCCCHHHHHHHHHHHH
Q psy17999 71 DQVSFDFLLSANVPFIKIGS--------------GDS---NNIPLIKYAASKQKPLIIST---GMLPSIEHVDNIYTTVK 130 (335)
Q Consensus 71 d~~svd~l~~l~v~~~KIaS--------------~d~---~n~~LL~~~a~~gkPvilSt---G~~~tl~Ei~~Av~~i~ 130 (335)
+.+.+..|.+.|++.+=-.+ ..+ ..+..++.+.+.|.++ -|+ |+..|.+|..+-+..++
T Consensus 162 ~~e~l~~LkeAGld~~~~t~~e~l~~~vr~~i~p~~~s~~~~l~~i~~a~~~Gl~~-~sg~i~G~gEt~edrv~~l~~lr 240 (371)
T PRK07360 162 YEEVLKALKDAGLDSMPGTAAEILVDEVRRIICPEKIKTAEWIEIVKTAHKLGLPT-TSTMMYGHVETPEHRIDHLLILR 240 (371)
T ss_pred HHHHHHHHHHcCCCcCCCcchhhccHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCc-eeeEEeeCCCCHHHHHHHHHHHH
Confidence 35667888888888773111 111 2245556666777775 222 33346777777777776
Q ss_pred h-cCCCCceeecccCCCCCCCCcccccCceEEee-ecC--------CCCCCccCCCchHHHHHHHHCCC--CCe-ecCCC
Q psy17999 131 Q-YHSNLSILHCVSAYPTPYPTVKQYHSNLSILH-CVS--------AYPTPYHDINLNVIHTLRSRYPD--IPI-GYSGH 197 (335)
Q Consensus 131 ~-g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llH-C~s--------~YP~~~~~~nL~~i~~L~~~fp~--~pV-G~SdH 197 (335)
+ +-.. -|.. .+ + ++-++| .|- ..+++.+ . |+.|...|=.+|+ ..| ++. .
T Consensus 241 ~l~~~~-------~g~~-~f--I-----p~~f~~~~Tpl~~~~~~~~~~~~~~-~-lr~iAi~Rl~lp~~~~~i~a~~-~ 302 (371)
T PRK07360 241 EIQQET-------GGIT-EF--V-----PLPFVHENAPLYERGRVKGGAPGLE-D-LLLYAVSRIFLGNWIKNIQASW-V 302 (371)
T ss_pred Hhchhh-------CCee-EE--E-----eccccCCCCccccccccCCCCCHHH-H-HHHHHHHHHhcCCCCCCeeccc-e
Confidence 5 2110 0000 00 0 111122 110 1122333 3 8888888877887 334 333 4
Q ss_pred CCChHHHHHHHHcCCcEE-----EeccCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q psy17999 198 ENGVHVCYAAVAMGAQII-----EKHFTLDKSWKGSDHASSLTPPELKALVTGI 246 (335)
Q Consensus 198 t~g~~~~~aAvalGA~vI-----EkH~tld~~~~G~Dh~~Sl~p~el~~lv~~i 246 (335)
+.|......+...||+.| +-|++.. .|..+...++++++.+|++++
T Consensus 303 ~lg~~~~~~~l~~Gan~~~~~~~~~~v~~~---~G~~~~~~~~~~~~~~~i~~~ 353 (371)
T PRK07360 303 KLGLKLAQVALNCGANDLGGTLMEEHITKM---AGASGGTYMSVEELQWMIKSI 353 (371)
T ss_pred eeCHHHHHHHHhcCCccCcCcCcccceecc---cCCCCCCCCCHHHHHHHHHHc
Confidence 677777778899999844 5555542 232333336788888887764
No 253
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=83.32 E-value=7.3 Score=39.07 Aligned_cols=117 Identities=16% Similarity=0.244 Sum_probs=67.6
Q ss_pred CCCCcEEEeec----ccccccccccccCCCCCCC--CCCcccHHHHHHhhcCCHHHHHHHHHHHHH---cCCceEec---
Q psy17999 1 ECGADCVKFQK----SCLSTKFTQSALDRPYLSP--HAWANTYGQHKQHLEFSQEEYVMLQQCADQ---VDIMFTAS--- 68 (335)
Q Consensus 1 ~aGaDaVKFQ~----~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~el~~e~~~~L~~~~~~---~Gi~f~st--- 68 (335)
+||.|.|-..- |-...+++ |+... ..||.+ +.++..|..|=+..+++.+-. .|+.+-..
T Consensus 161 ~AGfDgVEih~ah~GyLl~qFLS------p~~N~RtDeyGGs---lenR~rf~~eii~~vr~~~g~~f~v~vri~~~~~~ 231 (382)
T cd02931 161 EAGFDGVEIHAVHEGYLLDQFTI------SLFNKRTDKYGGS---LENRLRFAIEIVEEIKARCGEDFPVSLRYSVKSYI 231 (382)
T ss_pred HcCCCEEEEeccccChHHHHhcC------CccCCCCCcCCCC---HHHHhHHHHHHHHHHHHhcCCCceEEEEEechhhc
Confidence 47999988764 12222222 22111 125543 345567877877777776531 33332211
Q ss_pred ----------------cCC-hh---hHHHHHhCCCCEEEEcCCCCC---------------CHHHHHHHHh-cCCcEEEe
Q psy17999 69 ----------------AMD-QV---SFDFLLSANVPFIKIGSGDSN---------------NIPLIKYAAS-KQKPLIIS 112 (335)
Q Consensus 69 ----------------pfd-~~---svd~l~~l~v~~~KIaS~d~~---------------n~~LL~~~a~-~gkPvilS 112 (335)
-++ ++ -++.|++.|+|++-|..+... ++++.+.+.+ .+.|||.+
T Consensus 232 ~~~~~~~~~~~~~~~~g~~~e~~~~~~~~l~~~gvD~l~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~pvi~~ 311 (382)
T cd02931 232 KDLRQGALPGEEFQEKGRDLEEGLKAAKILEEAGYDALDVDAGSYDAWYWNHPPMYQKKGMYLPYCKALKEVVDVPVIMA 311 (382)
T ss_pred cccccccccccccccCCCCHHHHHHHHHHHHHhCCCEEEeCCCCCcccccccCCccCCcchhHHHHHHHHHHCCCCEEEe
Confidence 011 22 235566789999998765422 1456666655 58899999
Q ss_pred CCCCCCHHHHHHHHH
Q psy17999 113 TGMLPSIEHVDNIYT 127 (335)
Q Consensus 113 tG~~~tl~Ei~~Av~ 127 (335)
-|.. +.++.+++++
T Consensus 312 G~i~-~~~~~~~~l~ 325 (382)
T cd02931 312 GRME-DPELASEAIN 325 (382)
T ss_pred CCCC-CHHHHHHHHH
Confidence 9998 8888877654
No 254
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=83.25 E-value=12 Score=39.24 Aligned_cols=51 Identities=25% Similarity=0.437 Sum_probs=36.5
Q ss_pred CCCCCccCCCchHHHHHHHHCCCCCeecCCCCC-C--hHHHHHHHHcCCcEEEeccCCC
Q psy17999 167 AYPTPYHDINLNVIHTLRSRYPDIPIGYSGHEN-G--VHVCYAAVAMGAQIIEKHFTLD 222 (335)
Q Consensus 167 ~YP~~~~~~nL~~i~~L~~~fp~~pVG~SdHt~-g--~~~~~aAvalGA~vIEkH~tld 222 (335)
.|-+|.+-.+ .+..|++.+ ++||++-.|.. | .+.+++|+..||+.|| -|+.
T Consensus 182 G~~~P~~v~~--li~~l~~~~-~v~i~~H~HND~GlA~ANslaAi~aGa~~Vd--~Tl~ 235 (524)
T PRK12344 182 GGTLPHEVAE--IVAEVRAAP-GVPLGIHAHNDSGCAVANSLAAVEAGARQVQ--GTIN 235 (524)
T ss_pred CCcCHHHHHH--HHHHHHHhc-CCeEEEEECCCCChHHHHHHHHHHhCCCEEE--Eecc
Confidence 3444443333 377888888 89999988864 4 5567999999999998 4544
No 255
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=83.10 E-value=31 Score=34.10 Aligned_cols=156 Identities=16% Similarity=0.262 Sum_probs=92.8
Q ss_pred hhcCCHHHHHHHHHHHHHcCCceEeccCChhhHHHHHhCCCCEEEEcCCCCCCHHHHHHHHhcCCcEE----EeCCCCCC
Q psy17999 43 HLEFSQEEYVMLQQCADQVDIMFTASAMDQVSFDFLLSANVPFIKIGSGDSNNIPLIKYAASKQKPLI----ISTGMLPS 118 (335)
Q Consensus 43 ~~el~~e~~~~L~~~~~~~Gi~f~stpfd~~svd~l~~l~v~~~KIaS~d~~n~~LL~~~a~~gkPvi----lStG~~~t 118 (335)
...|+.++...+.+...+.|+..+=--|.. .++-.-+..+..-...+..++++++.-++.- +--|.. +
T Consensus 18 ~~~f~~~~~~~ia~~Ld~aGV~~IEvg~g~-------gl~g~s~~~G~~~~~~~e~i~~~~~~~~~~~~~~ll~pg~~-~ 89 (333)
T TIGR03217 18 RHQFTIEQVRAIAAALDEAGVDAIEVTHGD-------GLGGSSFNYGFSAHTDLEYIEAAADVVKRAKVAVLLLPGIG-T 89 (333)
T ss_pred CCcCCHHHHHHHHHHHHHcCCCEEEEecCC-------CCCCccccCCCCCCChHHHHHHHHHhCCCCEEEEEeccCcc-C
Confidence 356889999988888877776665332210 0110111223445567888888877644433 334566 8
Q ss_pred HHHHHHHHHHHHhcCCCCceeecccCCCCCCCCcccccCceEEeeecCCCCCCccCCCchHHHHHHHHCCCCCe-ecC--
Q psy17999 119 IEHVDNIYTTVKQYHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYPTPYHDINLNVIHTLRSRYPDIPI-GYS-- 195 (335)
Q Consensus 119 l~Ei~~Av~~i~~g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~s~YP~~~~~~nL~~i~~L~~~fp~~pV-G~S-- 195 (335)
.++++.|.+. |-.. + ++ ..||+-. +.-...+...|++ +..| ++-
T Consensus 90 ~~dl~~a~~~---gvd~----------------i-----ri-~~~~~e~------d~~~~~i~~ak~~--G~~v~~~l~~ 136 (333)
T TIGR03217 90 VHDLKAAYDA---GART----------------V-----RV-ATHCTEA------DVSEQHIGMAREL--GMDTVGFLMM 136 (333)
T ss_pred HHHHHHHHHC---CCCE----------------E-----EE-EeccchH------HHHHHHHHHHHHc--CCeEEEEEEc
Confidence 9998887653 2110 0 22 2355532 2234566666653 5665 432
Q ss_pred CCCC--C--hHHHHHHHHcCCcEEEeccCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q psy17999 196 GHEN--G--VHVCYAAVAMGAQIIEKHFTLDKSWKGSDHASSLTPPELKALVTGIRDI 249 (335)
Q Consensus 196 dHt~--g--~~~~~aAvalGA~vIEkH~tld~~~~G~Dh~~Sl~p~el~~lv~~ir~~ 249 (335)
.|.. . ...+..+..+||+.|= +. |-.-+++|+++.++++.+++.
T Consensus 137 s~~~~~e~l~~~a~~~~~~Ga~~i~--i~--------DT~G~~~P~~v~~~v~~l~~~ 184 (333)
T TIGR03217 137 SHMTPPEKLAEQAKLMESYGADCVY--IV--------DSAGAMLPDDVRDRVRALKAV 184 (333)
T ss_pred ccCCCHHHHHHHHHHHHhcCCCEEE--Ec--------cCCCCCCHHHHHHHHHHHHHh
Confidence 3433 3 3445667889999764 22 777899999999999999863
No 256
>cd01545 PBP1_SalR Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand bind
Probab=83.04 E-value=15 Score=33.08 Aligned_cols=63 Identities=14% Similarity=0.074 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHcCCceEeccCChhh-------HHHHHhCCCCEEEEcCCCCCCHHHHHHHHhcCCcEEE
Q psy17999 49 EEYVMLQQCADQVDIMFTASAMDQVS-------FDFLLSANVPFIKIGSGDSNNIPLIKYAASKQKPLII 111 (335)
Q Consensus 49 e~~~~L~~~~~~~Gi~f~stpfd~~s-------vd~l~~l~v~~~KIaS~d~~n~~LL~~~a~~gkPvil 111 (335)
+-+..+.+.+++.|..++....+... .+.+.+.++|.+-+-+.+-...++++.+.+.+.||++
T Consensus 16 ~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~~~~~~~~~~~~~ipvv~ 85 (270)
T cd01545 16 EIQLGALDACRDTGYQLVIEPCDSGSPDLAERVRALLQRSRVDGVILTPPLSDNPELLDLLDEAGVPYVR 85 (270)
T ss_pred HHHHHHHHHHHhCCCeEEEEeCCCCchHHHHHHHHHHHHCCCCEEEEeCCCCCccHHHHHHHhcCCCEEE
Confidence 44667778888999887776665321 3345566799988876654456778888888999874
No 257
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=83.01 E-value=9.8 Score=36.50 Aligned_cols=90 Identities=13% Similarity=0.194 Sum_probs=57.3
Q ss_pred hcCCcEEEeCCCCCCHHHHHHHHHHHHh-cCCCCceeecccCCCCCCCCcccccCceEEee--ecCC----CC-CCccCC
Q psy17999 104 SKQKPLIISTGMLPSIEHVDNIYTTVKQ-YHSNLSILHCVSAYPTPYPTVKQYHSNLSILH--CVSA----YP-TPYHDI 175 (335)
Q Consensus 104 ~~gkPvilStG~~~tl~Ei~~Av~~i~~-g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llH--C~s~----YP-~~~~~~ 175 (335)
+.++|+|+|-+.. +.+++.++++.++. |.. +.+=|+ |... |. ....+.
T Consensus 89 ~~~~p~i~si~g~-~~~~~~~~a~~~~~aG~~-----------------------D~iElN~~cP~~~~gg~~~~~~~~~ 144 (301)
T PRK07259 89 EFDTPIIANVAGS-TEEEYAEVAEKLSKAPNV-----------------------DAIELNISCPNVKHGGMAFGTDPEL 144 (301)
T ss_pred ccCCcEEEEeccC-CHHHHHHHHHHHhccCCc-----------------------CEEEEECCCCCCCCCccccccCHHH
Confidence 3478999999999 99999999999876 412 222232 3211 00 000123
Q ss_pred CchHHHHHHHHCCCCCeec--C-CCCCChHHHHHHHHcCCcEEEec
Q psy17999 176 NLNVIHTLRSRYPDIPIGY--S-GHENGVHVCYAAVAMGAQIIEKH 218 (335)
Q Consensus 176 nL~~i~~L~~~fp~~pVG~--S-dHt~g~~~~~aAvalGA~vIEkH 218 (335)
-...+..+|+.. ++||+. + +.+.-...+..+...||+.|.-+
T Consensus 145 ~~eiv~~vr~~~-~~pv~vKl~~~~~~~~~~a~~l~~~G~d~i~~~ 189 (301)
T PRK07259 145 AYEVVKAVKEVV-KVPVIVKLTPNVTDIVEIAKAAEEAGADGLSLI 189 (301)
T ss_pred HHHHHHHHHHhc-CCCEEEEcCCCchhHHHHHHHHHHcCCCEEEEE
Confidence 355677888877 788864 4 33333556677889999977644
No 258
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=83.00 E-value=6.5 Score=40.02 Aligned_cols=140 Identities=16% Similarity=0.162 Sum_probs=92.7
Q ss_pred CHHHHHHHHHHHHHcCCceE----------eccCChhhHHHHHhCCCCEEEEcCCCCCCHHHHHHHHhcCCcEEEeCCCC
Q psy17999 47 SQEEYVMLQQCADQVDIMFT----------ASAMDQVSFDFLLSANVPFIKIGSGDSNNIPLIKYAASKQKPLIISTGML 116 (335)
Q Consensus 47 ~~e~~~~L~~~~~~~Gi~f~----------stpfd~~svd~l~~l~v~~~KIaS~d~~n~~LL~~~a~~gkPvilStG~~ 116 (335)
=.+.|.+|.+.|+++++.+. ....|..++..|.-+ -.|.+++-+.|.-|++.-.++
T Consensus 201 lye~fD~lLeI~~~yDVtlSLGDglRPG~i~DA~D~aQi~El~~l--------------geL~~rA~e~gVQvMVEGPGH 266 (423)
T TIGR00190 201 LYKNFDYILEIAKEYDVTLSLGDGLRPGCIADATDRAQISELITL--------------GELVERAREADVQCMVEGPGH 266 (423)
T ss_pred hHHHHHHHHHHHHHhCeeeeccCCcCCCccccCCcHHHHHHHHHH--------------HHHHHHHHHcCCeEEEECCCC
Confidence 35789999999999998874 344555555555443 578888889999999998878
Q ss_pred CCHHHHHHHHHHHHhcCCCCceeecccCCCCCCCCcccccCceEEeeecCCCCCCccCCCchHHHHHHHHCCCCCeecCC
Q psy17999 117 PSIEHVDNIYTTVKQYHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYPTPYHDINLNVIHTLRSRYPDIPIGYSG 196 (335)
Q Consensus 117 ~tl~Ei~~Av~~i~~g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~s~YP~~~~~~nL~~i~~L~~~fp~~pVG~Sd 196 (335)
..+++|..-++..++-+. . + ++ |- |.=+. + ++-.|| |
T Consensus 267 vPl~~I~~nv~lqK~lc~--------~---A----------Pf--------Yv-------LGPLv-----T-DiApGY-D 303 (423)
T TIGR00190 267 VPLDQIEANVRLQKELCD--------E---A----------PF--------YV-------LGPLV-----T-DIAPGY-D 303 (423)
T ss_pred CcHHHHHHHHHHHHHhhC--------C---C----------Ce--------ee-------cCCcc-----c-ccCCCc-h
Confidence 899999999988776221 0 0 22 11 11111 2 555677 8
Q ss_pred CCCChHHHHHHHHcCCcEEEeccCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q psy17999 197 HENGVHVCYAAVAMGAQIIEKHFTLDKSWKGSDHASSLTPPELKALVTGIRDIE 250 (335)
Q Consensus 197 Ht~g~~~~~aAvalGA~vIEkH~tld~~~~G~Dh~~Sl~p~el~~lv~~ir~~~ 250 (335)
|..+.--...|.+.||++|= -+|+--.+.-| ++++.++=|-.-|-..
T Consensus 304 HItsAIGgAiAa~~GAdfLC-YVTPaEHL~LP------~~eDVreGviA~kIAA 350 (423)
T TIGR00190 304 HITSAIGAAIAGWAGADFLC-YVTPKEHLALP------NVEDVKEGVIAYKIAA 350 (423)
T ss_pred HHHHHHHHHHHHHcCCCeEE-ecCcHHHcCCC------CHHHHHHHHHHHHHHH
Confidence 88774444456788999663 46766444434 3667766665555433
No 259
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=82.98 E-value=42 Score=33.16 Aligned_cols=184 Identities=15% Similarity=0.161 Sum_probs=100.7
Q ss_pred cCCHHHHHHHHHHHHHcC--CceEe-c------------cCChhhHHHHHhCCCCEEE--------------EcCCCCC-
Q psy17999 45 EFSQEEYVMLQQCADQVD--IMFTA-S------------AMDQVSFDFLLSANVPFIK--------------IGSGDSN- 94 (335)
Q Consensus 45 el~~e~~~~L~~~~~~~G--i~f~s-t------------pfd~~svd~l~~l~v~~~K--------------IaS~d~~- 94 (335)
.++.+.+.++.+..++.. +.+.+ | .-+++.+..|.+.|++.+- |..+..+
T Consensus 108 ~~~~~~~~e~i~~Ik~~~p~i~i~~~~~~ei~~~~~~~g~~~~e~l~~LkeAGld~~~~~g~E~~~~~v~~~i~~~~~~~ 187 (351)
T TIGR03700 108 NLPFEWYLDMIRTLKEAYPDLHVKAFTAVEIHHFSKISGLPTEEVLDELKEAGLDSMPGGGAEIFAEEVRQQICPEKISA 187 (351)
T ss_pred CCCHHHHHHHHHHHHHHCCCceEEeCCHHHHHHHHHHcCCCHHHHHHHHHHcCCCcCCCCcccccCHHHHhhcCCCCCCH
Confidence 355677888888888763 55433 1 1245668888888887553 1112222
Q ss_pred -C-HHHHHHHHhcCCcEEEe--CCCCCCHHHHHHHHHHHHh-cCCCCceeecccCCCCCCCCcccccCceEEee-ecC--
Q psy17999 95 -N-IPLIKYAASKQKPLIIS--TGMLPSIEHVDNIYTTVKQ-YHSNLSILHCVSAYPTPYPTVKQYHSNLSILH-CVS-- 166 (335)
Q Consensus 95 -n-~~LL~~~a~~gkPvilS--tG~~~tl~Ei~~Av~~i~~-g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llH-C~s-- 166 (335)
. +..++.+.+.|.++--. .|+.-|.+|+.+-+..++. +-. .|-.+.. + ++-+++ .+-
T Consensus 188 ~~~l~~i~~a~~~Gi~~~sg~i~GlgEt~edrv~~l~~Lr~l~~~--------~~~f~~f--i-----P~~f~~~~tpl~ 252 (351)
T TIGR03700 188 ERWLEIHRTAHELGLKTNATMLYGHIETPAHRVDHMLRLRELQDE--------TGGFQAF--I-----PLAFQPDNNRLN 252 (351)
T ss_pred HHHHHHHHHHHHcCCCcceEEEeeCCCCHHHHHHHHHHHHHhhHh--------hCCceEE--E-----eecccCCCCccc
Confidence 2 35677777788875211 3444578888887777775 321 0000000 0 010010 110
Q ss_pred --CCCCCccCCCchHHHHHHHHCCCCC-eecCCCCCChHHHHHHHHcCCc-----EEEeccCCCCCCCCCCCCCCCCHHH
Q psy17999 167 --AYPTPYHDINLNVIHTLRSRYPDIP-IGYSGHENGVHVCYAAVAMGAQ-----IIEKHFTLDKSWKGSDHASSLTPPE 238 (335)
Q Consensus 167 --~YP~~~~~~nL~~i~~L~~~fp~~p-VG~SdHt~g~~~~~aAvalGA~-----vIEkH~tld~~~~G~Dh~~Sl~p~e 238 (335)
.+|.+...-.|+.|...|=.+|+++ |-=|-=+.|......+...||+ ++|-+++.+- |.....-+++++
T Consensus 253 ~~~~~~~~~~e~lr~iA~~Rl~l~~i~~i~a~w~~~~~~~~~~~L~~Gand~ggt~~~e~v~~~~---g~~~~~~~~~~~ 329 (351)
T TIGR03700 253 RLLAKGPTGLDDLKTLAVSRLYLDNIPHIKAYWVMLGLKLAQVALAFGVNDLDGTVVEEKIGHDA---GAKSPQALSKDE 329 (351)
T ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCCcccccccccCHHHHHHHHhcCCCCCCccCccceeeccc---cCCCCCCCCHHH
Confidence 1233333344666666665566533 2111123377788889999997 6766666552 323445588899
Q ss_pred HHHHHHHH
Q psy17999 239 LKALVTGI 246 (335)
Q Consensus 239 l~~lv~~i 246 (335)
|..+++++
T Consensus 330 l~~~i~~~ 337 (351)
T TIGR03700 330 LVRLIRDA 337 (351)
T ss_pred HHHHHHHc
Confidence 98887653
No 260
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=82.79 E-value=57 Score=32.94 Aligned_cols=149 Identities=16% Similarity=0.197 Sum_probs=75.1
Q ss_pred CCceEeccCCh---hh----HHHHHhCCCCEEEEcCC-------------CCCCHHHHHHHHh-----cCCcEEEeCCCC
Q psy17999 62 DIMFTASAMDQ---VS----FDFLLSANVPFIKIGSG-------------DSNNIPLIKYAAS-----KQKPLIISTGML 116 (335)
Q Consensus 62 Gi~f~stpfd~---~s----vd~l~~l~v~~~KIaS~-------------d~~n~~LL~~~a~-----~gkPvilStG~~ 116 (335)
+..++.+.+.. +. +..+++.++|+|-|-=+ -..+..++.++-+ +.+||+++...
T Consensus 99 ~~p~i~si~g~~~~~~~~~~a~~~~~~g~d~ielN~scP~~~~~~~~g~~~~~~~~~~~~i~~~v~~~~~~Pv~vKl~p- 177 (420)
T PRK08318 99 DRALIASIMVECNEEEWKEIAPLVEETGADGIELNFGCPHGMSERGMGSAVGQVPELVEMYTRWVKRGSRLPVIVKLTP- 177 (420)
T ss_pred CceEEEEeccCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCccccCCcccccCCHHHHHHHHHHHHhccCCcEEEEcCC-
Confidence 46677776654 22 23445677888775211 1256666655443 47999999874
Q ss_pred CCHHHHHHHHHHHHh-cCCCCceeecccCCCCCCCCcccccCceEEeeec---CCCCCCc-cCCCchHHHHHHHHCC--C
Q psy17999 117 PSIEHVDNIYTTVKQ-YHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCV---SAYPTPY-HDINLNVIHTLRSRYP--D 189 (335)
Q Consensus 117 ~tl~Ei~~Av~~i~~-g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~---s~YP~~~-~~~nL~~i~~L~~~fp--~ 189 (335)
+..++...++.+.. |-. -+.+..+=.....-+++..+ ..-.+|-. ..|=-+. ..+.|+.|..+++..+ +
T Consensus 178 -~~~~~~~~a~~~~~~Gad--gi~~~Nt~~~~~~id~~~~~-~~p~~~~~~~~gg~SG~a~~p~~l~~v~~~~~~~~~~~ 253 (420)
T PRK08318 178 -NITDIREPARAAKRGGAD--AVSLINTINSITGVDLDRMI-PMPIVNGKSSHGGYCGPAVKPIALNMVAEIARDPETRG 253 (420)
T ss_pred -CcccHHHHHHHHHHCCCC--EEEEecccCccccccccccC-CCceecCCCCcccccchhhhHHHHHHHHHHHhccccCC
Confidence 44456666665555 433 12221111110000000000 01123422 1222222 4467999999998763 6
Q ss_pred CCe-ecCCCCCChHHHHHHHHcCCcEEE
Q psy17999 190 IPI-GYSGHENGVHVCYAAVAMGAQIIE 216 (335)
Q Consensus 190 ~pV-G~SdHt~g~~~~~aAvalGA~vIE 216 (335)
+|| |--|=+. ..-++..+..||+.+-
T Consensus 254 ipIig~GGI~s-~~da~e~i~aGA~~Vq 280 (420)
T PRK08318 254 LPISGIGGIET-WRDAAEFILLGAGTVQ 280 (420)
T ss_pred CCEEeecCcCC-HHHHHHHHHhCCChhe
Confidence 888 5333222 3334445669999665
No 261
>PLN02321 2-isopropylmalate synthase
Probab=82.65 E-value=24 Score=38.14 Aligned_cols=174 Identities=14% Similarity=0.084 Sum_probs=93.5
Q ss_pred hcCCHHHHHHHHHHHHHcCCceEe------ccCChhhHHHHHhC--C-CC----EEEEcCCCCCCHHHHHHHHhcCC---
Q psy17999 44 LEFSQEEYVMLQQCADQVDIMFTA------SAMDQVSFDFLLSA--N-VP----FIKIGSGDSNNIPLIKYAASKQK--- 107 (335)
Q Consensus 44 ~el~~e~~~~L~~~~~~~Gi~f~s------tpfd~~svd~l~~l--~-v~----~~KIaS~d~~n~~LL~~~a~~gk--- 107 (335)
..|+.++-.++.+.-.+.|+..+- +|-|.+.+..+.+. + ++ .-+|.+.--.|..-++.+.+..+
T Consensus 103 ~~~s~eeKl~Ia~~L~~lGVd~IEvGfP~~Sp~D~e~vr~i~~~~~~~v~~~~~v~~i~a~~ra~~~dId~A~~al~~a~ 182 (632)
T PLN02321 103 ATLTSKEKLDIARQLAKLGVDIIEAGFPIASPDDLEAVKTIAKEVGNEVDEDGYVPVICGLSRCNKKDIDAAWEAVKHAK 182 (632)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEeCcCCCccHHHHHHHHHHhcccCCCccccceeeeeehhccHHhHHHHHHHhcCCC
Confidence 458999999999999999998774 33344445555432 1 11 13455555567777776666522
Q ss_pred -c-EEEeCCCC---------CCHHHHH----HHHHHHHh-cCCCCceeecccCCCCCCCCccccc------CceEEeee-
Q psy17999 108 -P-LIISTGML---------PSIEHVD----NIYTTVKQ-YHSNLSILHCVSAYPTPYPTVKQYH------SNLSILHC- 164 (335)
Q Consensus 108 -P-vilStG~~---------~tl~Ei~----~Av~~i~~-g~~~~~~~~c~~g~~~~~~~~~~~~------~~l~llHC- 164 (335)
| |.+....+ .|.+|+. +++++.++ |... -.+-||-+.++...-+.+.- .--.|--|
T Consensus 183 ~~~I~i~~stSd~h~~~~l~~t~ee~l~~~~~~V~~Ak~~G~~~-v~fs~EDa~rtd~d~l~~~~~~a~~aGa~~I~L~D 261 (632)
T PLN02321 183 RPRIHTFIATSEIHMEHKLRKTPDEVVEIARDMVKYARSLGCED-VEFSPEDAGRSDPEFLYRILGEVIKAGATTLNIPD 261 (632)
T ss_pred CCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCce-EEEecccCCCCCHHHHHHHHHHHHHcCCCEEEecc
Confidence 2 33333222 1334433 34455554 3211 22345555544321111110 00011112
Q ss_pred cCCCCCCccCCCchHHHHHHHHCCC---CCeecCCCC-CC--hHHHHHHHHcCCcEEEeccCCC
Q psy17999 165 VSAYPTPYHDINLNVIHTLRSRYPD---IPIGYSGHE-NG--VHVCYAAVAMGAQIIEKHFTLD 222 (335)
Q Consensus 165 ~s~YP~~~~~~nL~~i~~L~~~fp~---~pVG~SdHt-~g--~~~~~aAvalGA~vIEkH~tld 222 (335)
|..|-+|.+-.+ .|..|++.+|+ +++++--|- .| ..-+++|+..||+.|| .|+.
T Consensus 262 TvG~~~P~~v~~--li~~l~~~~~~~~~v~i~vH~HND~GlAvANslaAv~AGA~~Vd--~Tin 321 (632)
T PLN02321 262 TVGYTLPSEFGQ--LIADIKANTPGIENVIISTHCQNDLGLSTANTLAGAHAGARQVE--VTIN 321 (632)
T ss_pred cccCCCHHHHHH--HHHHHHHhcCCCCCceEEEEeCCCCCHHHHHHHHHHHhCCCEEE--Eecc
Confidence 334445544333 37788888874 457777775 34 5567999999999998 4554
No 262
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=82.64 E-value=14 Score=32.81 Aligned_cols=125 Identities=15% Similarity=0.146 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHcCCceEeccCChhhHHHHHhCCCCEEEEcCCCCCCHHHHHHHHhcCCcEEEeCCCCCCHHHHHHHHHH
Q psy17999 49 EEYVMLQQCADQVDIMFTASAMDQVSFDFLLSANVPFIKIGSGDSNNIPLIKYAASKQKPLIISTGMLPSIEHVDNIYTT 128 (335)
Q Consensus 49 e~~~~L~~~~~~~Gi~f~stpfd~~svd~l~~l~v~~~KIaS~d~~n~~LL~~~a~~gkPvilStG~~~tl~Ei~~Av~~ 128 (335)
+..+.|.+.|+++++.++..- .++.+.+++++.+-++..++. ..-.+.. .+.-.++++... +.+|+..|.+
T Consensus 43 ~~a~~l~~~~~~~~~~liin~----~~~la~~~~~dGvHl~~~~~~-~~~~r~~--~~~~~~ig~S~h-~~~e~~~a~~- 113 (180)
T PF02581_consen 43 ELARRLAELCQKYGVPLIIND----RVDLALELGADGVHLGQSDLP-PAEARKL--LGPDKIIGASCH-SLEEAREAEE- 113 (180)
T ss_dssp HHHHHHHHHHHHTTGCEEEES-----HHHHHHCT-SEEEEBTTSSS-HHHHHHH--HTTTSEEEEEES-SHHHHHHHHH-
T ss_pred HHHHHHHHHhhcceEEEEecC----CHHHHHhcCCCEEEecccccc-hHHhhhh--cccceEEEeecC-cHHHHHHhhh-
Confidence 346678888999998887754 567888899999999998873 2223333 344456666667 9999777653
Q ss_pred HHhcCCCCceeecccCCCCCCCCcccccCceEEeeecCCCCCCc----cCCCchHHHHHHHHCCCCCe-ecCCCCCChHH
Q psy17999 129 VKQYHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYPTPY----HDINLNVIHTLRSRYPDIPI-GYSGHENGVHV 203 (335)
Q Consensus 129 i~~g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~s~YP~~~----~~~nL~~i~~L~~~fp~~pV-G~SdHt~g~~~ 203 (335)
.+. +.+.+=- -|||+- .-..+..+..+++.+ .+|| ..-+=+...
T Consensus 114 --~g~------------------------dYv~~gp--vf~T~sk~~~~~~g~~~l~~~~~~~-~~pv~AlGGI~~~~-- 162 (180)
T PF02581_consen 114 --LGA------------------------DYVFLGP--VFPTSSKPGAPPLGLDGLREIARAS-PIPVYALGGITPEN-- 162 (180)
T ss_dssp --CTT------------------------SEEEEET--SS--SSSSS-TTCHHHHHHHHHHHT-SSCEEEESS--TTT--
T ss_pred --cCC------------------------CEEEECC--ccCCCCCccccccCHHHHHHHHHhC-CCCEEEEcCCCHHH--
Confidence 122 2222111 123222 456788888888888 6888 333322222
Q ss_pred HHHHHHcCCc
Q psy17999 204 CYAAVAMGAQ 213 (335)
Q Consensus 204 ~~aAvalGA~ 213 (335)
...+..+||.
T Consensus 163 i~~l~~~Ga~ 172 (180)
T PF02581_consen 163 IPELREAGAD 172 (180)
T ss_dssp HHHHHHTT-S
T ss_pred HHHHHHcCCC
Confidence 2234466765
No 263
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=82.49 E-value=8.8 Score=35.53 Aligned_cols=52 Identities=21% Similarity=0.183 Sum_probs=41.5
Q ss_pred HHHHHhCCCCEEEEcCC------CCCCHHHHHHHHhc-CCcEEEeCCCCCCHHHHHHHHH
Q psy17999 75 FDFLLSANVPFIKIGSG------DSNNIPLIKYAASK-QKPLIISTGMLPSIEHVDNIYT 127 (335)
Q Consensus 75 vd~l~~l~v~~~KIaS~------d~~n~~LL~~~a~~-gkPvilStG~~~tl~Ei~~Av~ 127 (335)
+..+++.|++++-+.+. .-.|+++++++.+. +.|||.+-|.. +++++.++.+
T Consensus 155 ~~~l~~~G~d~i~v~~i~~~g~~~g~~~~~i~~i~~~~~~pvia~GGi~-~~~di~~~l~ 213 (243)
T cd04731 155 AKEVEELGAGEILLTSMDRDGTKKGYDLELIRAVSSAVNIPVIASGGAG-KPEHFVEAFE 213 (243)
T ss_pred HHHHHHCCCCEEEEeccCCCCCCCCCCHHHHHHHHhhCCCCEEEeCCCC-CHHHHHHHHH
Confidence 35567789998877443 34579999999864 89999999999 9999988765
No 264
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=82.41 E-value=14 Score=34.02 Aligned_cols=83 Identities=11% Similarity=0.025 Sum_probs=60.9
Q ss_pred CHHHHHHHHHHHHHcCCceEeccCChhhHHHHHhCCCCEEEEcCCCCCCHHHHHHHHhc---CCcEEEeCCCCCCHHHHH
Q psy17999 47 SQEEYVMLQQCADQVDIMFTASAMDQVSFDFLLSANVPFIKIGSGDSNNIPLIKYAASK---QKPLIISTGMLPSIEHVD 123 (335)
Q Consensus 47 ~~e~~~~L~~~~~~~Gi~f~stpfd~~svd~l~~l~v~~~KIaS~d~~n~~LL~~~a~~---gkPvilStG~~~tl~Ei~ 123 (335)
+.-.-..+.++|+..|+.++..+++++.+....++|+|++|+=..+...+..|+.+.+. ..|++- +|+= +.+.
T Consensus 89 sp~~~~~v~~~~~~~~~~~~~G~~t~~E~~~A~~~Gad~vk~Fpa~~~G~~~l~~l~~~~~~~ipvva-iGGI-~~~n-- 164 (206)
T PRK09140 89 TPNTDPEVIRRAVALGMVVMPGVATPTEAFAALRAGAQALKLFPASQLGPAGIKALRAVLPPDVPVFA-VGGV-TPEN-- 164 (206)
T ss_pred CCCCCHHHHHHHHHCCCcEEcccCCHHHHHHHHHcCCCEEEECCCCCCCHHHHHHHHhhcCCCCeEEE-ECCC-CHHH--
Confidence 44456688999999999999999999999999999999999844444568888888763 377655 4544 4544
Q ss_pred HHHHHHHhcCC
Q psy17999 124 NIYTTVKQYHS 134 (335)
Q Consensus 124 ~Av~~i~~g~~ 134 (335)
+-++++.|..
T Consensus 165 -~~~~~~aGa~ 174 (206)
T PRK09140 165 -LAPYLAAGAA 174 (206)
T ss_pred -HHHHHHCCCe
Confidence 4445554543
No 265
>PLN02762 pyruvate kinase complex alpha subunit
Probab=82.34 E-value=12 Score=39.43 Aligned_cols=88 Identities=19% Similarity=0.249 Sum_probs=66.8
Q ss_pred CHHHHHHHHHHHHHcC----CceEeccCChhhHHHHHhC--CCCEEEEcCCCCCC------HH-----HHHHHHhcCCcE
Q psy17999 47 SQEEYVMLQQCADQVD----IMFTASAMDQVSFDFLLSA--NVPFIKIGSGDSNN------IP-----LIKYAASKQKPL 109 (335)
Q Consensus 47 ~~e~~~~L~~~~~~~G----i~f~stpfd~~svd~l~~l--~v~~~KIaS~d~~n------~~-----LL~~~a~~gkPv 109 (335)
+.++...+++++++.| +.+++=.-..++++-+.+. -.|.+-||=+||.- .| +++.+-..||||
T Consensus 227 ~a~Dv~~~r~~l~~~g~~~~~~IiAKIE~~~av~nl~eIi~~sDgiMVARGDLGvEip~e~vp~~QK~II~~c~~~gKPV 306 (509)
T PLN02762 227 SAEVIKHLKSYIAARSRDSDIGVIAKIESLDSLKNLEEIIRASDGAMVARGDLGAQIPLEQVPSVQEKIVRLCRQLNKPV 306 (509)
T ss_pred CHHHHHHHHHHHHHcCCCCCceEEEEeCCHHHHHHHHHHHHhcCEEEEecCccccccCHHHhHHHHHHHHHHHHHhCCCE
Confidence 5678888888888775 5678888777777655542 28899999998753 34 445566789999
Q ss_pred EEeCCC--------CCCHHHHHHHHHHHHhcCC
Q psy17999 110 IISTGM--------LPSIEHVDNIYTTVKQYHS 134 (335)
Q Consensus 110 ilStG~--------~~tl~Ei~~Av~~i~~g~~ 134 (335)
|+.|=| .||-+|+-..++.+..|..
T Consensus 307 IvATQmLeSMi~np~PTRAEvsDVaNAVlDGtD 339 (509)
T PLN02762 307 IVASQLLESMIEYPTPTRAEVADVSEAVRQRAD 339 (509)
T ss_pred EEECchHHhhhhCCCCCchhHHHHHHHHHhCCC
Confidence 998875 3788999999999987754
No 266
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=82.28 E-value=34 Score=33.99 Aligned_cols=74 Identities=14% Similarity=0.212 Sum_probs=53.1
Q ss_pred CCHHHHHHHHHHHHHc-----CCceEecc--CChhhHHHHHhCCCCEEEEcCCCCCCHHHHHHHHhcCCcEEEeCCCCCC
Q psy17999 46 FSQEEYVMLQQCADQV-----DIMFTASA--MDQVSFDFLLSANVPFIKIGSGDSNNIPLIKYAASKQKPLIISTGMLPS 118 (335)
Q Consensus 46 l~~e~~~~L~~~~~~~-----Gi~f~stp--fd~~svd~l~~l~v~~~KIaS~d~~n~~LL~~~a~~gkPvilStG~~~t 118 (335)
|+.+++.+|.+..++. .+.+-+.| ++.+.++.+.+.|+..+-||= +..|-..|+.+++. . +
T Consensus 70 L~~~~l~~ll~~i~~~~~~~~eitiE~nP~~lt~e~l~~lk~~G~nrisiGv-QS~~d~vL~~l~R~----------~-~ 137 (353)
T PRK05904 70 LNDQLLDILLSTIKPYVDNNCEFTIECNPELITQSQINLLKKNKVNRISLGV-QSMNNNILKQLNRT----------H-T 137 (353)
T ss_pred CCHHHHHHHHHHHHHhcCCCCeEEEEeccCcCCHHHHHHHHHcCCCEEEEec-ccCCHHHHHHcCCC----------C-C
Confidence 6888888888877764 23344444 566677888888888888874 45556777777652 3 7
Q ss_pred HHHHHHHHHHHHh
Q psy17999 119 IEHVDNIYTTVKQ 131 (335)
Q Consensus 119 l~Ei~~Av~~i~~ 131 (335)
.+++.+|++.+++
T Consensus 138 ~~~~~~ai~~lr~ 150 (353)
T PRK05904 138 IQDSKEAINLLHK 150 (353)
T ss_pred HHHHHHHHHHHHH
Confidence 8889999888876
No 267
>PRK07695 transcriptional regulator TenI; Provisional
Probab=82.26 E-value=37 Score=30.46 Aligned_cols=135 Identities=14% Similarity=0.068 Sum_probs=78.2
Q ss_pred HhhcCCHHHHHHHHHHHHHcCCc-eEeccCChhhHHHHHhCCCCEEEEcCCCCCCHHHHHHHHhcCCcEEEeCCCCCCHH
Q psy17999 42 QHLEFSQEEYVMLQQCADQVDIM-FTASAMDQVSFDFLLSANVPFIKIGSGDSNNIPLIKYAASKQKPLIISTGMLPSIE 120 (335)
Q Consensus 42 ~~~el~~e~~~~L~~~~~~~Gi~-f~stpfd~~svd~l~~l~v~~~KIaS~d~~n~~LL~~~a~~gkPvilStG~~~tl~ 120 (335)
|.-.++.+++..+.+.+.+.|.. .-..+.| .++.+..++++.+-++..+.. ..-+++.. .+..|-+| .. +.+
T Consensus 34 R~k~~~~~~~~~~~~~l~~~~~~~~~liin~--~~~la~~~~~~gvHl~~~~~~-~~~~r~~~-~~~~ig~s--~~-s~e 106 (201)
T PRK07695 34 REREKSAKELYEGVESLLKKGVPASKLIIND--RVDIALLLNIHRVQLGYRSFS-VRSVREKF-PYLHVGYS--VH-SLE 106 (201)
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCCCeEEEEC--HHHHHHHcCCCEEEeCcccCC-HHHHHHhC-CCCEEEEe--CC-CHH
Confidence 34468899999999999998875 1122222 477888899999999987653 22222221 14445554 45 888
Q ss_pred HHHHHHHHHHhcCCCCceeecccCCCCCCCCcccccCceEEeeecCCCCCC----ccCCCchHHHHHHHHCCCCCeecCC
Q psy17999 121 HVDNIYTTVKQYHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYPTP----YHDINLNVIHTLRSRYPDIPIGYSG 196 (335)
Q Consensus 121 Ei~~Av~~i~~g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~s~YP~~----~~~~nL~~i~~L~~~fp~~pVG~Sd 196 (335)
+...|.+. |. ++++++- -||+. ..-.++..+..+++.+ ++||--.+
T Consensus 107 ~a~~a~~~---Ga------------------------dyi~~g~--v~~t~~k~~~~~~g~~~l~~~~~~~-~ipvia~G 156 (201)
T PRK07695 107 EAIQAEKN---GA------------------------DYVVYGH--VFPTDCKKGVPARGLEELSDIARAL-SIPVIAIG 156 (201)
T ss_pred HHHHHHHc---CC------------------------CEEEECC--CCCCCCCCCCCCCCHHHHHHHHHhC-CCCEEEEc
Confidence 76655431 32 3332211 12322 1234677888888877 78884322
Q ss_pred CCCChHHHHHHHHcCCcE
Q psy17999 197 HENGVHVCYAAVAMGAQI 214 (335)
Q Consensus 197 Ht~g~~~~~aAvalGA~v 214 (335)
=. ...-...+...||+.
T Consensus 157 GI-~~~~~~~~~~~Ga~g 173 (201)
T PRK07695 157 GI-TPENTRDVLAAGVSG 173 (201)
T ss_pred CC-CHHHHHHHHHcCCCE
Confidence 11 233344456789883
No 268
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=82.25 E-value=17 Score=33.74 Aligned_cols=25 Identities=16% Similarity=0.481 Sum_probs=18.5
Q ss_pred CCCCccCCCchHHHHHHHHCCCCCee
Q psy17999 168 YPTPYHDINLNVIHTLRSRYPDIPIG 193 (335)
Q Consensus 168 YP~~~~~~nL~~i~~L~~~fp~~pVG 193 (335)
||+..- -..+.+..|+.-||++++-
T Consensus 135 FPa~~~-gg~~~lk~l~~p~p~~~~~ 159 (212)
T PRK05718 135 FPAEAS-GGVKMLKALAGPFPDVRFC 159 (212)
T ss_pred ccchhc-cCHHHHHHHhccCCCCeEE
Confidence 775432 2588899999999988774
No 269
>cd04234 AAK_AK AAK_AK: Amino Acid Kinase Superfamily (AAK), Aspartokinase (AK); this CD includes the N-terminal catalytic domain of aspartokinase (4-L-aspartate-4-phosphotransferase;). AK is the first enzyme in the biosynthetic pathway of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. It also catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind amino acids leading to allosteric regulation of the enzyme. In Escherichia coli, three different aspartokinase isoenzymes are regulated specifically by lysine, methionine, and threonine. AK-HSDHI (ThrA) and AK-HSDHII (MetL) are bifunctional enzymes that consist of an N-terminal AK and a C-terminal homoserine dehyd
Probab=82.07 E-value=30 Score=31.84 Aligned_cols=32 Identities=19% Similarity=0.228 Sum_probs=24.8
Q ss_pred EEEEcCCCCCCHHHHHHHHhc-------CCcEEEeCCCC
Q psy17999 85 FIKIGSGDSNNIPLIKYAASK-------QKPLIISTGML 116 (335)
Q Consensus 85 ~~KIaS~d~~n~~LL~~~a~~-------gkPvilStG~~ 116 (335)
.+|+|+.-+.+...++.+++. .++|+++.|+.
T Consensus 3 ViK~GGs~l~~~~~~~~~~~~i~~l~~g~~vvvV~Sg~~ 41 (227)
T cd04234 3 VQKFGGTSVASAERIKRVADIIKAYEKGNRVVVVVSAMG 41 (227)
T ss_pred EEEECccccCCHHHHHHHHHHHHHhhcCCCEEEEEcCCC
Confidence 589999999998877776542 46788888876
No 270
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=81.92 E-value=23 Score=35.21 Aligned_cols=126 Identities=13% Similarity=0.206 Sum_probs=73.7
Q ss_pred HHHHHHHHHcCCceEeccCChhhHHHHHhCCCCEEEEcCCCCCCHHHHHHHHhcCCcEEEeCCCCC----CHHHHHHHHH
Q psy17999 52 VMLQQCADQVDIMFTASAMDQVSFDFLLSANVPFIKIGSGDSNNIPLIKYAASKQKPLIISTGMLP----SIEHVDNIYT 127 (335)
Q Consensus 52 ~~L~~~~~~~Gi~f~stpfd~~svd~l~~l~v~~~KIaS~d~~n~~LL~~~a~~gkPvilStG~~~----tl~Ei~~Av~ 127 (335)
..|.+.|++.|+.........- ++=+. --..+..+++.+. ++|+|.+-|..- +.+++.++++
T Consensus 80 ~~La~~a~~~G~~~~~Gs~~~~------------~~~~~-~~~~~~~vr~~~p-~~p~~aNl~~~~~~~~~~~~~~~~~~ 145 (352)
T PRK05437 80 RKLAEAAEELGIAMGVGSQRAA------------LKDPE-LADSFSVVRKVAP-DGLLFANLGAVQLYGYGVEEAQRAVE 145 (352)
T ss_pred HHHHHHHHHcCCCeEecccHhh------------ccChh-hHHHHHHHHHHCC-CceEEeecCccccCCCCHHHHHHHHH
Confidence 7788888888877766554210 00000 0011122222221 789999888751 3588888888
Q ss_pred HHHhcCCCCceeecccCCCCCCCCcccccCceEEeeec--CCCCCCccCCCc----hHHHHHHHHCCCCCeec--CCCCC
Q psy17999 128 TVKQYHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCV--SAYPTPYHDINL----NVIHTLRSRYPDIPIGY--SGHEN 199 (335)
Q Consensus 128 ~i~~g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~--s~YP~~~~~~nL----~~i~~L~~~fp~~pVG~--SdHt~ 199 (335)
.+.. +-.-+|+. +.-..|..+-+. ..|..+++.. ++||+. ++...
T Consensus 146 ~~~a--------------------------dal~l~l~~~qe~~~p~g~~~f~~~le~i~~i~~~~-~vPVivK~~g~g~ 198 (352)
T PRK05437 146 MIEA--------------------------DALQIHLNPLQELVQPEGDRDFRGWLDNIAEIVSAL-PVPVIVKEVGFGI 198 (352)
T ss_pred hcCC--------------------------CcEEEeCccchhhcCCCCcccHHHHHHHHHHHHHhh-CCCEEEEeCCCCC
Confidence 7743 22334542 122222222333 5788899988 899975 45444
Q ss_pred ChHHHHHHHHcCCcEEEec
Q psy17999 200 GVHVCYAAVAMGAQIIEKH 218 (335)
Q Consensus 200 g~~~~~aAvalGA~vIEkH 218 (335)
....+..+...|++.|.-+
T Consensus 199 s~~~a~~l~~~Gvd~I~Vs 217 (352)
T PRK05437 199 SKETAKRLADAGVKAIDVA 217 (352)
T ss_pred cHHHHHHHHHcCCCEEEEC
Confidence 4677777888999988854
No 271
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=81.90 E-value=48 Score=31.47 Aligned_cols=131 Identities=12% Similarity=0.055 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHcCCceEeccC--ChhhHHHHHhCCCCEEEEcCCCCCC---HHHHHHHHhcCCcEEEeCCCCCCHHHHHH
Q psy17999 50 EYVMLQQCADQVDIMFTASAM--DQVSFDFLLSANVPFIKIGSGDSNN---IPLIKYAASKQKPLIISTGMLPSIEHVDN 124 (335)
Q Consensus 50 ~~~~L~~~~~~~Gi~f~stpf--d~~svd~l~~l~v~~~KIaS~d~~n---~~LL~~~a~~gkPvilStG~~~tl~Ei~~ 124 (335)
.+..|....+...++++.--| ++..++.+...|.|++-+-.+.+.. ..|++++.+.|.-+++.+. +.+|++.
T Consensus 99 ~~~~l~~v~~~v~iPvl~kdfi~~~~qi~~a~~~GAD~VlLi~~~l~~~~l~~li~~a~~lGl~~lvevh---~~~E~~~ 175 (260)
T PRK00278 99 SLEYLRAARAAVSLPVLRKDFIIDPYQIYEARAAGADAILLIVAALDDEQLKELLDYAHSLGLDVLVEVH---DEEELER 175 (260)
T ss_pred CHHHHHHHHHhcCCCEEeeeecCCHHHHHHHHHcCCCEEEEEeccCCHHHHHHHHHHHHHcCCeEEEEeC---CHHHHHH
Confidence 355666666677888775433 4556888889999999888887654 3366667777999998887 8889988
Q ss_pred HHHHHHhcCCCCceeecccCCCCCCCCcccccCceEEeeecCCCCCCccCCCchHHHHHHHHCCC-CCeecCCCCCChHH
Q psy17999 125 IYTTVKQYHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYPTPYHDINLNVIHTLRSRYPD-IPIGYSGHENGVHV 203 (335)
Q Consensus 125 Av~~i~~g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~s~YP~~~~~~nL~~i~~L~~~fp~-~pVG~SdHt~g~~~ 203 (335)
|.+. |. +++-.| +........++.....|.+.+|+ .++.--+.-....-
T Consensus 176 A~~~---ga------------------------diIgin---~rdl~~~~~d~~~~~~l~~~~p~~~~vIaegGI~t~ed 225 (260)
T PRK00278 176 ALKL---GA------------------------PLIGIN---NRNLKTFEVDLETTERLAPLIPSDRLVVSESGIFTPED 225 (260)
T ss_pred HHHc---CC------------------------CEEEEC---CCCcccccCCHHHHHHHHHhCCCCCEEEEEeCCCCHHH
Confidence 7642 32 333332 22222335667777888877765 34322133333455
Q ss_pred HHHHHHcCCc
Q psy17999 204 CYAAVAMGAQ 213 (335)
Q Consensus 204 ~~aAvalGA~ 213 (335)
...+..+||+
T Consensus 226 ~~~~~~~Gad 235 (260)
T PRK00278 226 LKRLAKAGAD 235 (260)
T ss_pred HHHHHHcCCC
Confidence 5567788998
No 272
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=81.88 E-value=16 Score=36.20 Aligned_cols=118 Identities=13% Similarity=0.175 Sum_probs=69.7
Q ss_pred CCCCcEEEeecccccccccccccCCCCCC--CCCCcccHHHHHHhhcCCHHHHHHHHHHHHHcCCceEecc-------CC
Q psy17999 1 ECGADCVKFQKSCLSTKFTQSALDRPYLS--PHAWANTYGQHKQHLEFSQEEYVMLQQCADQVDIMFTASA-------MD 71 (335)
Q Consensus 1 ~aGaDaVKFQ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~el~~e~~~~L~~~~~~~Gi~f~stp-------fd 71 (335)
+||.|.|-...=.-- |+ .++-.|+.. ...||.+ +.++..|..|=+..+++.+ ..-|.+=.++ .+
T Consensus 153 ~aGfDgVeih~ahGy-Ll--~qFlSp~~N~RtD~yGGs---lenR~Rf~~eii~~ir~~~-~~~v~vRis~~d~~~~G~~ 225 (337)
T PRK13523 153 EAGFDVIEIHGAHGY-LI--NEFLSPLSNKRTDEYGGS---PENRYRFLREIIDAVKEVW-DGPLFVRISASDYHPGGLT 225 (337)
T ss_pred HcCCCEEEEccccch-HH--HHhcCCccCCcCCCCCCC---HHHHHHHHHHHHHHHHHhc-CCCeEEEecccccCCCCCC
Confidence 479999887642100 11 122222221 1135543 4456678888888888887 2222222233 22
Q ss_pred hhh----HHHHHhCCCCEEEEcCCC----------CCCHHHHHHHHh-cCCcEEEeCCCCCCHHHHHHHH
Q psy17999 72 QVS----FDFLLSANVPFIKIGSGD----------SNNIPLIKYAAS-KQKPLIISTGMLPSIEHVDNIY 126 (335)
Q Consensus 72 ~~s----vd~l~~l~v~~~KIaS~d----------~~n~~LL~~~a~-~gkPvilStG~~~tl~Ei~~Av 126 (335)
.+. +..|++.|+|++-|..+. -.++++.+.+.+ .+.|||..-+.. |.+..++++
T Consensus 226 ~~e~~~i~~~l~~~gvD~i~vs~g~~~~~~~~~~~~~~~~~~~~ik~~~~ipVi~~G~i~-~~~~a~~~l 294 (337)
T PRK13523 226 VQDYVQYAKWMKEQGVDLIDVSSGAVVPARIDVYPGYQVPFAEHIREHANIATGAVGLIT-SGAQAEEIL 294 (337)
T ss_pred HHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccHHHHHHHHhhcCCcEEEeCCCC-CHHHHHHHH
Confidence 222 356667789999887764 125678777766 478999998888 887777654
No 273
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=81.75 E-value=13 Score=33.94 Aligned_cols=54 Identities=19% Similarity=0.147 Sum_probs=41.6
Q ss_pred hhHHHHHhCCCCEEEEcCCCC------CCHHHHHHHHhc-CCcEEEeCCCCCCHHHHHHHHH
Q psy17999 73 VSFDFLLSANVPFIKIGSGDS------NNIPLIKYAASK-QKPLIISTGMLPSIEHVDNIYT 127 (335)
Q Consensus 73 ~svd~l~~l~v~~~KIaS~d~------~n~~LL~~~a~~-gkPvilStG~~~tl~Ei~~Av~ 127 (335)
+-++.++++|++.+-+-+.+- .|+.+++++.+. +.|||.+-|.. +++++..+.+
T Consensus 150 e~~~~~~~~g~~~ii~~~~~~~g~~~G~d~~~i~~l~~~~~ipvia~GGi~-~~~di~~~~~ 210 (233)
T PRK00748 150 DLAKRFEDAGVKAIIYTDISRDGTLSGPNVEATRELAAAVPIPVIASGGVS-SLDDIKALKG 210 (233)
T ss_pred HHHHHHHhcCCCEEEEeeecCcCCcCCCCHHHHHHHHHhCCCCEEEeCCCC-CHHHHHHHHH
Confidence 335666777888666654432 579999999875 79999999999 9999988755
No 274
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=81.73 E-value=6.4 Score=39.30 Aligned_cols=78 Identities=17% Similarity=0.203 Sum_probs=56.7
Q ss_pred CCHHHHHHHHHHHHHcCCceEec-cCChhhHHHHHhCCCCEEEEcC-------CCCCCHHHHHHHHhc---CCcEEEeCC
Q psy17999 46 FSQEEYVMLQQCADQVDIMFTAS-AMDQVSFDFLLSANVPFIKIGS-------GDSNNIPLIKYAASK---QKPLIISTG 114 (335)
Q Consensus 46 l~~e~~~~L~~~~~~~Gi~f~st-pfd~~svd~l~~l~v~~~KIaS-------~d~~n~~LL~~~a~~---gkPvilStG 114 (335)
++++.+.+| .+..+++++.- +.+.+.+..+.++|+|.|.|.. +....+..|.++.+. ..|||++-|
T Consensus 208 ~~~~~l~~l---r~~~~~PvivKgv~~~~dA~~a~~~G~d~I~vsnhGGr~ld~~~~~~~~l~~i~~a~~~~i~vi~dGG 284 (351)
T cd04737 208 LSPADIEFI---AKISGLPVIVKGIQSPEDADVAINAGADGIWVSNHGGRQLDGGPASFDSLPEIAEAVNHRVPIIFDSG 284 (351)
T ss_pred CCHHHHHHH---HHHhCCcEEEecCCCHHHHHHHHHcCCCEEEEeCCCCccCCCCchHHHHHHHHHHHhCCCCeEEEECC
Confidence 555555554 44567787776 7888999999999999999931 111234556666542 589999999
Q ss_pred CCCCHHHHHHHHH
Q psy17999 115 MLPSIEHVDNIYT 127 (335)
Q Consensus 115 ~~~tl~Ei~~Av~ 127 (335)
.. +-.++.+|+.
T Consensus 285 Ir-~g~Di~kaLa 296 (351)
T cd04737 285 VR-RGEHVFKALA 296 (351)
T ss_pred CC-CHHHHHHHHH
Confidence 99 9999988866
No 275
>PLN02591 tryptophan synthase
Probab=81.34 E-value=14 Score=35.15 Aligned_cols=83 Identities=18% Similarity=0.205 Sum_probs=57.7
Q ss_pred cCCHHHHHHHHHHHHHcCCceEe--ccCC-hhhHHHHHhCCCCE-EEEcCCCC--------CC-HHHHHHHHh-cCCcEE
Q psy17999 45 EFSQEEYVMLQQCADQVDIMFTA--SAMD-QVSFDFLLSANVPF-IKIGSGDS--------NN-IPLIKYAAS-KQKPLI 110 (335)
Q Consensus 45 el~~e~~~~L~~~~~~~Gi~f~s--tpfd-~~svd~l~~l~v~~-~KIaS~d~--------~n-~~LL~~~a~-~gkPvi 110 (335)
.||.|+..++.+.|+++||.++. +|-. ++-+..+.+..-.| |-|++.-. .+ ..+++.+.+ +++||+
T Consensus 114 DLP~ee~~~~~~~~~~~gl~~I~lv~Ptt~~~ri~~ia~~~~gFIY~Vs~~GvTG~~~~~~~~~~~~i~~vk~~~~~Pv~ 193 (250)
T PLN02591 114 DLPLEETEALRAEAAKNGIELVLLTTPTTPTERMKAIAEASEGFVYLVSSTGVTGARASVSGRVESLLQELKEVTDKPVA 193 (250)
T ss_pred CCCHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHhCCCcEEEeeCCCCcCCCcCCchhHHHHHHHHHhcCCCceE
Confidence 48999999999999999987654 4544 34567777665555 44453311 11 233555555 699999
Q ss_pred EeCCCCCCHHHHHHHHHH
Q psy17999 111 ISTGMLPSIEHVDNIYTT 128 (335)
Q Consensus 111 lStG~~~tl~Ei~~Av~~ 128 (335)
+-.|.+ +.+++.++.+.
T Consensus 194 vGFGI~-~~e~v~~~~~~ 210 (250)
T PLN02591 194 VGFGIS-KPEHAKQIAGW 210 (250)
T ss_pred EeCCCC-CHHHHHHHHhc
Confidence 999999 99999986553
No 276
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=81.28 E-value=8.4 Score=37.79 Aligned_cols=117 Identities=15% Similarity=0.298 Sum_probs=69.5
Q ss_pred CCCCcEEEeec---ccccccccccccCCCCCC--CCCCcccHHHHHHhhcCCHHHHHHHHHHHH-H--cCCceEe-----
Q psy17999 1 ECGADCVKFQK---SCLSTKFTQSALDRPYLS--PHAWANTYGQHKQHLEFSQEEYVMLQQCAD-Q--VDIMFTA----- 67 (335)
Q Consensus 1 ~aGaDaVKFQ~---~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~el~~e~~~~L~~~~~-~--~Gi~f~s----- 67 (335)
+||.|.|-+.. |-...+++ |... ...||.+ +.++..|..|-++.+++.+- . .++.+-.
T Consensus 160 ~aGfDgVeih~a~gyLl~qFls------p~~N~R~D~yGGs---lenR~rf~~EiI~aIR~avG~d~~v~vris~~~~~~ 230 (338)
T cd04733 160 EAGFDGVQIHAAHGYLLSQFLS------PLTNKRTDEYGGS---LENRARLLLEIYDAIRAAVGPGFPVGIKLNSADFQR 230 (338)
T ss_pred HcCCCEEEEchhhhhHHHHhcC------CcCCCCCccCCCC---HHHHHHHHHHHHHHHHHHcCCCCeEEEEEcHHHcCC
Confidence 47899988754 11221222 2211 1135544 34567788888888888773 2 2333221
Q ss_pred ccCChhh----HHHHHhCCCCEEEEcCCCCC------------------CHHHHHHHHh-cCCcEEEeCCCCCCHHHHHH
Q psy17999 68 SAMDQVS----FDFLLSANVPFIKIGSGDSN------------------NIPLIKYAAS-KQKPLIISTGMLPSIEHVDN 124 (335)
Q Consensus 68 tpfd~~s----vd~l~~l~v~~~KIaS~d~~------------------n~~LL~~~a~-~gkPvilStG~~~tl~Ei~~ 124 (335)
.-++.+. ++.|++.|++++-|..+... ++++.+++.+ ++.||+..-+.. |+++.++
T Consensus 231 ~g~~~eea~~ia~~Le~~Gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~v~iPVi~~G~i~-t~~~a~~ 309 (338)
T cd04733 231 GGFTEEDALEVVEALEEAGVDLVELSGGTYESPAMAGAKKESTIAREAYFLEFAEKIRKVTKTPLMVTGGFR-TRAAMEQ 309 (338)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEecCCCCCCccccccccCCccccchhhHHHHHHHHHHcCCCEEEeCCCC-CHHHHHH
Confidence 1144333 46677889999987665311 2455556654 589999999988 8888887
Q ss_pred HHH
Q psy17999 125 IYT 127 (335)
Q Consensus 125 Av~ 127 (335)
+++
T Consensus 310 ~l~ 312 (338)
T cd04733 310 ALA 312 (338)
T ss_pred HHH
Confidence 654
No 277
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=81.12 E-value=66 Score=32.61 Aligned_cols=86 Identities=13% Similarity=0.159 Sum_probs=53.5
Q ss_pred CHHHHH-HHHHHHHHc-CCceEeccCC---hhh----HHHHHhCCCCEEEEc--CCC-----------CCCHHHHHHH--
Q psy17999 47 SQEEYV-MLQQCADQV-DIMFTASAMD---QVS----FDFLLSANVPFIKIG--SGD-----------SNNIPLIKYA-- 102 (335)
Q Consensus 47 ~~e~~~-~L~~~~~~~-Gi~f~stpfd---~~s----vd~l~~l~v~~~KIa--S~d-----------~~n~~LL~~~-- 102 (335)
+.+.|. ++.+..+++ ++.+++|.+. ++. +..+++.|+|+|-+- +.+ .++..+++++
T Consensus 96 g~~~~l~~i~~~k~~~~~~pvIaSi~~~~s~~~~~~~a~~~e~~GaD~iELNiSCPn~~~~r~~g~~~gq~~e~~~~i~~ 175 (385)
T PLN02495 96 PFETMLAEFKQLKEEYPDRILIASIMEEYNKDAWEEIIERVEETGVDALEINFSCPHGMPERKMGAAVGQDCDLLEEVCG 175 (385)
T ss_pred CHHHHHHHHHHHHhhCCCCcEEEEccCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcCccchhhccCHHHHHHHHH
Confidence 444444 443433555 6899999854 333 445667789998862 212 2677788555
Q ss_pred --Hh-cCCcEEEeCCCCCCHHHHHHHHHHHHh-cCC
Q psy17999 103 --AS-KQKPLIISTGMLPSIEHVDNIYTTVKQ-YHS 134 (335)
Q Consensus 103 --a~-~gkPvilStG~~~tl~Ei~~Av~~i~~-g~~ 134 (335)
-+ +.+||+++-+. ++.++...++.+.. |-.
T Consensus 176 ~Vk~~~~iPv~vKLsP--n~t~i~~ia~aa~~~Gad 209 (385)
T PLN02495 176 WINAKATVPVWAKMTP--NITDITQPARVALKSGCE 209 (385)
T ss_pred HHHHhhcCceEEEeCC--ChhhHHHHHHHHHHhCCC
Confidence 33 47999999883 45567777776665 443
No 278
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=81.09 E-value=10 Score=38.28 Aligned_cols=81 Identities=9% Similarity=0.023 Sum_probs=59.6
Q ss_pred cCCHHHHHHHHHHHHHcCCceEeccCChhhHHHHHhCCCCEEEEcCCCCCC-------HHHHHHHHh---cCCcEEEeCC
Q psy17999 45 EFSQEEYVMLQQCADQVDIMFTASAMDQVSFDFLLSANVPFIKIGSGDSNN-------IPLIKYAAS---KQKPLIISTG 114 (335)
Q Consensus 45 el~~e~~~~L~~~~~~~Gi~f~stpfd~~svd~l~~l~v~~~KIaS~d~~n-------~~LL~~~a~---~gkPvilStG 114 (335)
.++++++++|++.- .+-.++-.+.+.+++..+.++|+|.|.|+..--++ ...|.++++ .+.|||++-|
T Consensus 231 ~ltW~di~~lr~~~--~~pvivKgV~s~~dA~~a~~~Gvd~I~Vs~hGGr~~d~~~~t~~~L~~i~~a~~~~~~vi~dGG 308 (381)
T PRK11197 231 SISWKDLEWIRDFW--DGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDITILADSG 308 (381)
T ss_pred CCCHHHHHHHHHhC--CCCEEEEecCCHHHHHHHHhCCCCEEEECCCCCCCCCCcccHHHHHHHHHHHhcCCCeEEeeCC
Confidence 36667766666643 34556678899999999999999999987543333 355555543 3689999999
Q ss_pred CCCCHHHHHHHHHH
Q psy17999 115 MLPSIEHVDNIYTT 128 (335)
Q Consensus 115 ~~~tl~Ei~~Av~~ 128 (335)
.. +-.+|.+|+..
T Consensus 309 Ir-~g~Di~KALaL 321 (381)
T PRK11197 309 IR-NGLDVVRMIAL 321 (381)
T ss_pred cC-cHHHHHHHHHc
Confidence 99 99999988653
No 279
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=81.01 E-value=12 Score=35.86 Aligned_cols=92 Identities=20% Similarity=0.208 Sum_probs=59.3
Q ss_pred cCCcEEEeCCCCCCHHHHHHHHHHHHh-cC-CCCceeecccCCCCCCCCcccccCceEEe--eecCC------CCCCccC
Q psy17999 105 KQKPLIISTGMLPSIEHVDNIYTTVKQ-YH-SNLSILHCVSAYPTPYPTVKQYHSNLSIL--HCVSA------YPTPYHD 174 (335)
Q Consensus 105 ~gkPvilStG~~~tl~Ei~~Av~~i~~-g~-~~~~~~~c~~g~~~~~~~~~~~~~~l~ll--HC~s~------YP~~~~~ 174 (335)
.+.|+++|-.++ +.+|+..+++.+.+ +. . +..-| +|... |-..++
T Consensus 89 ~~~pl~~qi~g~-~~~~~~~~a~~~~~~~~~~-----------------------d~ielN~~cP~~~~~g~~l~~~~~- 143 (300)
T TIGR01037 89 FPTPLIASVYGS-SVEEFAEVAEKLEKAPPYV-----------------------DAYELNLSCPHVKGGGIAIGQDPE- 143 (300)
T ss_pred CCCcEEEEeecC-CHHHHHHHHHHHHhccCcc-----------------------CEEEEECCCCCCCCCccccccCHH-
Confidence 367999999888 99999999999875 21 2 23333 34321 111111
Q ss_pred CCchHHHHHHHHCCCCCeec--C-CCCCChHHHHHHHHcCCcEEEeccCCC
Q psy17999 175 INLNVIHTLRSRYPDIPIGY--S-GHENGVHVCYAAVAMGAQIIEKHFTLD 222 (335)
Q Consensus 175 ~nL~~i~~L~~~fp~~pVG~--S-dHt~g~~~~~aAvalGA~vIEkH~tld 222 (335)
.=...+..+|+.. ++||.. + +++.-...+.++...|++.|.-|-|+.
T Consensus 144 ~~~eiv~~vr~~~-~~pv~vKi~~~~~~~~~~a~~l~~~G~d~i~v~nt~~ 193 (300)
T TIGR01037 144 LSADVVKAVKDKT-DVPVFAKLSPNVTDITEIAKAAEEAGADGLTLINTLR 193 (300)
T ss_pred HHHHHHHHHHHhc-CCCEEEECCCChhhHHHHHHHHHHcCCCEEEEEccCC
Confidence 2245677888877 788863 3 333335566678889999998776653
No 280
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=80.95 E-value=13 Score=28.71 Aligned_cols=79 Identities=15% Similarity=0.213 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHcCC-ceEeccCChhhHHHHHhCCCCEEEEc--CCCCCCHHHHHHHHhc--CCcEEEeCCCCCCHHHH
Q psy17999 48 QEEYVMLQQCADQVDI-MFTASAMDQVSFDFLLSANVPFIKIG--SGDSNNIPLIKYAASK--QKPLIISTGMLPSIEHV 122 (335)
Q Consensus 48 ~e~~~~L~~~~~~~Gi-~f~stpfd~~svd~l~~l~v~~~KIa--S~d~~n~~LL~~~a~~--gkPvilStG~~~tl~Ei 122 (335)
......+.++.+..|+ .+.+..-..+.++++.+..++++-+. ..+.+-..+++.+.+. +.|+|+-|+.. +.+++
T Consensus 8 ~~~~~~l~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~d~iiid~~~~~~~~~~~~~~i~~~~~~~~ii~~t~~~-~~~~~ 86 (112)
T PF00072_consen 8 PEIRELLEKLLERAGYEEVTTASSGEEALELLKKHPPDLIIIDLELPDGDGLELLEQIRQINPSIPIIVVTDED-DSDEV 86 (112)
T ss_dssp HHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHSTESEEEEESSSSSSBHHHHHHHHHHHTTTSEEEEEESST-SHHHH
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCHHHHHHHhcccCceEEEEEeeeccccccccccccccccccccEEEecCCC-CHHHH
Confidence 3455667777779999 66655555566788888888888776 5678888999999885 58999999888 88888
Q ss_pred HHHHH
Q psy17999 123 DNIYT 127 (335)
Q Consensus 123 ~~Av~ 127 (335)
..+++
T Consensus 87 ~~~~~ 91 (112)
T PF00072_consen 87 QEALR 91 (112)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87764
No 281
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=80.85 E-value=13 Score=34.37 Aligned_cols=104 Identities=14% Similarity=0.205 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHcC-Cce-EeccCChhhHHHHHhCCCCEEEEcCCCCCCHHHHHHHHhcCCcEEEeCCCCCCHHHHHHHHH
Q psy17999 50 EYVMLQQCADQVD-IMF-TASAMDQVSFDFLLSANVPFIKIGSGDSNNIPLIKYAASKQKPLIISTGMLPSIEHVDNIYT 127 (335)
Q Consensus 50 ~~~~L~~~~~~~G-i~f-~stpfd~~svd~l~~l~v~~~KIaS~d~~n~~LL~~~a~~gkPvilStG~~~tl~Ei~~Av~ 127 (335)
.+..+.+..++++ +.+ .-|+.|.++++.+.+.|.+|+--+. .|..+++++.+.+.|++ -|.. |+.|+..|.+
T Consensus 42 a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA~FivSP~---~~~~vi~~a~~~~i~~i--PG~~-TptEi~~A~~ 115 (201)
T PRK06015 42 ALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGSRFIVSPG---TTQELLAAANDSDVPLL--PGAA-TPSEVMALRE 115 (201)
T ss_pred HHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCCCEEECCC---CCHHHHHHHHHcCCCEe--CCCC-CHHHHHHHHH
Confidence 3444444444443 222 2478888888888888888876553 67888888888787766 4656 8888888865
Q ss_pred HHHhcCCCCceeecccCCCCCCCCcccccCceEEeeecCCCCCCccCCC-chHHHHHHHHCCCCCee
Q psy17999 128 TVKQYHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYPTPYHDIN-LNVIHTLRSRYPDIPIG 193 (335)
Q Consensus 128 ~i~~g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~s~YP~~~~~~n-L~~i~~L~~~fp~~pVG 193 (335)
. |.. -| + -||+. .+. .+.|..|+.-||++++-
T Consensus 116 ~---Ga~----------------~v-----K--------~FPa~--~~GG~~yikal~~plp~~~l~ 148 (201)
T PRK06015 116 E---GYT----------------VL-----K--------FFPAE--QAGGAAFLKALSSPLAGTFFC 148 (201)
T ss_pred C---CCC----------------EE-----E--------ECCch--hhCCHHHHHHHHhhCCCCcEE
Confidence 3 322 00 1 25643 353 78899999999998774
No 282
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=80.85 E-value=38 Score=32.54 Aligned_cols=150 Identities=14% Similarity=0.209 Sum_probs=90.7
Q ss_pred hcCCHHHHHHHHHHHHHc---CCceEeccC--Ch-hh---HHHHHhCCCCEEEEcCC---CCCCHHHHHH---HHh-c-C
Q psy17999 44 LEFSQEEYVMLQQCADQV---DIMFTASAM--DQ-VS---FDFLLSANVPFIKIGSG---DSNNIPLIKY---AAS-K-Q 106 (335)
Q Consensus 44 ~el~~e~~~~L~~~~~~~---Gi~f~stpf--d~-~s---vd~l~~l~v~~~KIaS~---d~~n~~LL~~---~a~-~-g 106 (335)
..|+.++..++.+.+.+. .++++..+- +. +. ++..+++|+|.+-+... -.+.-.++.+ +++ + +
T Consensus 49 ~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~la~~a~~~Gad~v~v~~P~y~~~~~~~i~~yf~~v~~~~~~ 128 (290)
T TIGR00683 49 FMLSTEEKKEIFRIAKDEAKDQIALIAQVGSVNLKEAVELGKYATELGYDCLSAVTPFYYKFSFPEIKHYYDTIIAETGG 128 (290)
T ss_pred ccCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHHhCCCEEEEeCCcCCCCCHHHHHHHHHHHHhhCCC
Confidence 468999999888766553 355655543 33 22 34556789998887655 3333445544 543 4 6
Q ss_pred CcEEEe-----CCCCCCHHHHHHHHHHHHhcCCCCceeecccCCCCCCCCcccccCceEEeeecCCCCCCccCCCchHHH
Q psy17999 107 KPLIIS-----TGMLPSIEHVDNIYTTVKQYHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYPTPYHDINLNVIH 181 (335)
Q Consensus 107 kPvilS-----tG~~~tl~Ei~~Av~~i~~g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~s~YP~~~~~~nL~~i~ 181 (335)
.||+|= ||...+.+.+.+.++ .+ +++-+...| -|+..+.
T Consensus 129 lpv~lYn~P~~tg~~l~~~~i~~L~~-----~p-----------------------nv~giK~s~--------~d~~~~~ 172 (290)
T TIGR00683 129 LNMIVYSIPFLTGVNMGIEQFGELYK-----NP-----------------------KVLGVKFTA--------GDFYLLE 172 (290)
T ss_pred CCEEEEeCccccccCcCHHHHHHHhc-----CC-----------------------CEEEEEeCC--------CCHHHHH
Confidence 999985 777777777776542 22 454444432 4667778
Q ss_pred HHHHHCCCCCeecCCCCCChHHHHHHHHcCCc-EEEeccCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q psy17999 182 TLRSRYPDIPIGYSGHENGVHVCYAAVAMGAQ-IIEKHFTLDKSWKGSDHASSLTPPELKALVTGI 246 (335)
Q Consensus 182 ~L~~~fp~~pVG~SdHt~g~~~~~aAvalGA~-vIEkH~tld~~~~G~Dh~~Sl~p~el~~lv~~i 246 (335)
.+++.+++..| |+++. .....+..+||+ ++= ....+-|+++.+|.+..
T Consensus 173 ~~~~~~~~~~v-~~G~d---~~~~~~l~~G~~G~i~-------------~~~n~~P~~~~~i~~~~ 221 (290)
T TIGR00683 173 RLKKAYPNHLI-WAGFD---EMMLPAASLGVDGAIG-------------STFNVNGVRARQIFELT 221 (290)
T ss_pred HHHHhCCCCEE-EECch---HHHHHHHHCCCCEEEe-------------cHHHhCHHHHHHHHHHH
Confidence 88777766544 55543 334455678987 331 12334577777776554
No 283
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=80.84 E-value=54 Score=31.39 Aligned_cols=155 Identities=12% Similarity=0.083 Sum_probs=90.3
Q ss_pred hcCCHHHHHHHHHHHHHc---CCceEeccC-C-hhh---HHHHHhCCCCEEEEcCCCCC---CHHHHH---HHHh-cCCc
Q psy17999 44 LEFSQEEYVMLQQCADQV---DIMFTASAM-D-QVS---FDFLLSANVPFIKIGSGDSN---NIPLIK---YAAS-KQKP 108 (335)
Q Consensus 44 ~el~~e~~~~L~~~~~~~---Gi~f~stpf-d-~~s---vd~l~~l~v~~~KIaS~d~~---n~~LL~---~~a~-~gkP 108 (335)
..||.++..++.+.+.+. .+++++.+- + .++ +..++++|++.+-+...-.. .-.+++ .+++ ++.|
T Consensus 48 ~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~~~t~~~i~~a~~a~~~Gad~v~~~pP~y~~~~~~~i~~~f~~v~~~~~~p 127 (289)
T cd00951 48 FSLTPDEYAQVVRAAVEETAGRVPVLAGAGYGTATAIAYAQAAEKAGADGILLLPPYLTEAPQEGLYAHVEAVCKSTDLG 127 (289)
T ss_pred ccCCHHHHHHHHHHHHHHhCCCCCEEEecCCCHHHHHHHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHhcCCCC
Confidence 469999999998876653 366665443 2 222 34556789998877655332 223444 3544 6899
Q ss_pred EEEe--CCCCCCHHHHHHHHHHHHhcCCCCceeecccCCCCCCCCcccccCceEEeeecCCCCCCccCCCchHHHHHHHH
Q psy17999 109 LIIS--TGMLPSIEHVDNIYTTVKQYHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYPTPYHDINLNVIHTLRSR 186 (335)
Q Consensus 109 vilS--tG~~~tl~Ei~~Av~~i~~g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~s~YP~~~~~~nL~~i~~L~~~ 186 (335)
|+|= +|...+.+.+.+.++ .++ +++-+--+ .-|+..+..+++.
T Consensus 128 i~lYn~~g~~l~~~~l~~L~~----~~p-----------------------nivgiKds--------~~d~~~~~~~~~~ 172 (289)
T cd00951 128 VIVYNRANAVLTADSLARLAE----RCP-----------------------NLVGFKDG--------VGDIELMRRIVAK 172 (289)
T ss_pred EEEEeCCCCCCCHHHHHHHHh----cCC-----------------------CEEEEEeC--------CCCHHHHHHHHHh
Confidence 9986 776667776665432 122 33333322 2466777777666
Q ss_pred CCCCCeecCCCCCChHHHHHHHHcCCc-EEEeccCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q psy17999 187 YPDIPIGYSGHENGVHVCYAAVAMGAQ-IIEKHFTLDKSWKGSDHASSLTPPELKALVTGI 246 (335)
Q Consensus 187 fp~~pVG~SdHt~g~~~~~aAvalGA~-vIEkH~tld~~~~G~Dh~~Sl~p~el~~lv~~i 246 (335)
+++--..|+++.........+..+||+ +|= ....+-|+.+.+|.+.+
T Consensus 173 ~~~~~~v~~G~~~~d~~~~~~l~~Ga~G~is-------------~~~n~~P~~~~~l~~~~ 220 (289)
T cd00951 173 LGDRLLYLGGLPTAEVFALAYLAMGVPTYSS-------------AVFNFVPEIALAFYAAV 220 (289)
T ss_pred cCCCeEEEeCCCcchHhHHHHHHCCCCEEEe-------------chhhhhHHHHHHHHHHH
Confidence 643112466664333445567888987 441 22345577777777654
No 284
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=80.80 E-value=12 Score=34.33 Aligned_cols=78 Identities=17% Similarity=0.087 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHcCCc-eEe-----------------ccCCh-hhHHHHHhCCCCEEEEcCC------CCCCHHHHHHHH
Q psy17999 49 EEYVMLQQCADQVDIM-FTA-----------------SAMDQ-VSFDFLLSANVPFIKIGSG------DSNNIPLIKYAA 103 (335)
Q Consensus 49 e~~~~L~~~~~~~Gi~-f~s-----------------tpfd~-~svd~l~~l~v~~~KIaS~------d~~n~~LL~~~a 103 (335)
++...+.+.+++.|.. ++. +..++ +-++.+.+.|++.+-+... .-.|+.+++++.
T Consensus 106 ~d~~~~~~~~~~~g~~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~g~~~ii~~~~~~~g~~~g~~~~~i~~i~ 185 (230)
T TIGR00007 106 ENPDLVKELLKEYGPERIVVSLDARGGEVAVKGWLEKSEVSLEELAKRLEELGLEGIIYTDISRDGTLSGPNFELTKELV 185 (230)
T ss_pred hCHHHHHHHHHHhCCCcEEEEEEEECCEEEEcCCcccCCCCHHHHHHHHHhCCCCEEEEEeecCCCCcCCCCHHHHHHHH
Confidence 4456688888888733 221 12332 2356677889996654422 235799999988
Q ss_pred h-cCCcEEEeCCCCCCHHHHHHHHH
Q psy17999 104 S-KQKPLIISTGMLPSIEHVDNIYT 127 (335)
Q Consensus 104 ~-~gkPvilStG~~~tl~Ei~~Av~ 127 (335)
+ .+.|||.+-|.. +++++..+.+
T Consensus 186 ~~~~ipvia~GGi~-~~~di~~~~~ 209 (230)
T TIGR00007 186 KAVNVPVIASGGVS-SIDDLIALKK 209 (230)
T ss_pred HhCCCCEEEeCCCC-CHHHHHHHHH
Confidence 7 488999999999 9999998654
No 285
>PLN02334 ribulose-phosphate 3-epimerase
Probab=80.80 E-value=25 Score=32.41 Aligned_cols=141 Identities=15% Similarity=0.124 Sum_probs=82.8
Q ss_pred hcCCHHHHHHHHHHHHHc-CCceEeccCChh-hHHHHHhCCCCEEEEcCC---CCCCHHHHHHHHhcCCcEEEeCCCCCC
Q psy17999 44 LEFSQEEYVMLQQCADQV-DIMFTASAMDQV-SFDFLLSANVPFIKIGSG---DSNNIPLIKYAASKQKPLIISTGMLPS 118 (335)
Q Consensus 44 ~el~~e~~~~L~~~~~~~-Gi~f~stpfd~~-svd~l~~l~v~~~KIaS~---d~~n~~LL~~~a~~gkPvilStG~~~t 118 (335)
+.|+.+..+.|+++|+.. ++.++.. |+. -++.+.+.|++.+=+.-. +-+-...++++-+.|+-+-+++... |
T Consensus 50 ~~~g~~~~~~l~~~~~~~~~vhlmv~--~p~d~~~~~~~~gad~v~vH~~q~~~d~~~~~~~~i~~~g~~iGls~~~~-t 126 (229)
T PLN02334 50 LTIGPPVVKALRKHTDAPLDCHLMVT--NPEDYVPDFAKAGASIFTFHIEQASTIHLHRLIQQIKSAGMKAGVVLNPG-T 126 (229)
T ss_pred cccCHHHHHHHHhcCCCcEEEEeccC--CHHHHHHHHHHcCCCEEEEeeccccchhHHHHHHHHHHCCCeEEEEECCC-C
Confidence 346668888999988887 8877775 222 367778899999844444 3333467777777888788888754 5
Q ss_pred HHHHHHHHHHHHhcCCCCceeecccCCCCCCCCcccccCceEEeeecCCCCCCccC----CCchHHHHHHHHCCCCCeec
Q psy17999 119 IEHVDNIYTTVKQYHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYPTPYHD----INLNVIHTLRSRYPDIPIGY 194 (335)
Q Consensus 119 l~Ei~~Av~~i~~g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~s~YP~~~~~----~nL~~i~~L~~~fp~~pVG~ 194 (335)
..|...++ +..+.. +.+++=+ -||+...+ .-+..+..+++..++.||.-
T Consensus 127 ~~~~~~~~--~~~~~~-----------------------Dyi~~~~--v~pg~~~~~~~~~~~~~i~~~~~~~~~~~I~a 179 (229)
T PLN02334 127 PVEAVEPV--VEKGLV-----------------------DMVLVMS--VEPGFGGQSFIPSMMDKVRALRKKYPELDIEV 179 (229)
T ss_pred CHHHHHHH--HhccCC-----------------------CEEEEEE--EecCCCccccCHHHHHHHHHHHHhCCCCcEEE
Confidence 44444332 121112 3332222 25544422 33556677777766677632
Q ss_pred CCCCCChHHHHHHHHcCCcEE
Q psy17999 195 SGHENGVHVCYAAVAMGAQII 215 (335)
Q Consensus 195 SdHt~g~~~~~aAvalGA~vI 215 (335)
-+ .....-.......||+++
T Consensus 180 ~G-GI~~e~i~~l~~aGad~v 199 (229)
T PLN02334 180 DG-GVGPSTIDKAAEAGANVI 199 (229)
T ss_pred eC-CCCHHHHHHHHHcCCCEE
Confidence 11 112334445678899843
No 286
>PTZ00081 enolase; Provisional
Probab=80.75 E-value=14 Score=38.00 Aligned_cols=84 Identities=17% Similarity=0.194 Sum_probs=47.6
Q ss_pred CCHHHHHH-HHHHHHHcCCceEeccCChhhHHHHHhCC--C-CEEEEcCCCC--CCHHHHHHHHhcCC--cEEEeCCCCC
Q psy17999 46 FSQEEYVM-LQQCADQVDIMFTASAMDQVSFDFLLSAN--V-PFIKIGSGDS--NNIPLIKYAASKQK--PLIISTGMLP 117 (335)
Q Consensus 46 l~~e~~~~-L~~~~~~~Gi~f~stpfd~~svd~l~~l~--v-~~~KIaS~d~--~n~~LL~~~a~~gk--PvilStG~~~ 117 (335)
++.+++.. +.+.+++++|.++-.|+++++.+-+.++. + +-+.|...|+ +|..-++...+.+. =+.+..+...
T Consensus 281 ~s~~eli~~~~~~l~~y~I~~IEDPl~~~D~eg~~~Lt~~lg~~i~IvgDE~~~tn~~~l~~~I~~~aad~i~iKvnqiG 360 (439)
T PTZ00081 281 LTGEELVELYLDLVKKYPIVSIEDPFDQDDWEAYAKLTAAIGQKVQIVGDDLLVTNPTRIKKAIEKKACNALLLKVNQIG 360 (439)
T ss_pred cCHHHHHHHHHHHHhcCCcEEEEcCCCcccHHHHHHHHHhhCCCceEEcCCcccCCHHHHHHHHHhCCCCEEEecccccc
Confidence 56666555 55899999999999999887766555442 1 1234444442 55555555444332 2444444333
Q ss_pred CHHHHHHHHHHH
Q psy17999 118 SIEHVDNIYTTV 129 (335)
Q Consensus 118 tl~Ei~~Av~~i 129 (335)
++.|..++++..
T Consensus 361 GITe~l~~a~lA 372 (439)
T PTZ00081 361 TVTEAIEAAKLA 372 (439)
T ss_pred CHHHHHHHHHHH
Confidence 555555544433
No 287
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=80.73 E-value=11 Score=36.16 Aligned_cols=27 Identities=15% Similarity=0.241 Sum_probs=18.9
Q ss_pred CCcEEEeCCCCCCHHHHHHHHHHHHh-cC
Q psy17999 106 QKPLIISTGMLPSIEHVDNIYTTVKQ-YH 133 (335)
Q Consensus 106 gkPvilStG~~~tl~Ei~~Av~~i~~-g~ 133 (335)
..|||..+|.. +.+|..+.++..++ |-
T Consensus 70 ~~~viagv~~~-~~~~ai~~a~~a~~~Ga 97 (288)
T cd00954 70 KVTLIAHVGSL-NLKESQELAKHAEELGY 97 (288)
T ss_pred CCeEEeccCCC-CHHHHHHHHHHHHHcCC
Confidence 45888888876 77777776666666 53
No 288
>COG3745 CpaB Flp pilus assembly protein CpaB [Intracellular trafficking and secretion]
Probab=80.66 E-value=1.5 Score=42.24 Aligned_cols=62 Identities=16% Similarity=0.183 Sum_probs=49.3
Q ss_pred ccceEEEEeecCCCCcccccCCcEEeeCCCCCCCcchHH---------HHhcchhhcccCCCCcccCCCCC
Q psy17999 270 KLGKCIVSSCDIQAGTVLQEFHVCIKVAEPKGICGTRYA---------SVMGRKVNRDIRRDESIQDIDLD 331 (335)
Q Consensus 270 ~~rrsl~a~~di~~G~~l~~~dl~~kr~~~~Gi~p~~~~---------~viG~~~~~di~~~~~i~~~~l~ 331 (335)
.+..-+++++|++.|+.|+.++|...==|..++++..|. .+.|+.+...|..||||..+.|.
T Consensus 44 ~~~~VlVA~~~L~~G~~L~~d~l~~~~WP~~~vp~gais~~~~pda~~~l~G~iv~~pi~~GEPVl~~Kl~ 114 (276)
T COG3745 44 PTKPVLVAAVDLPVGQRLSADQLRWQPWPADSVPAGAISRENAPDALTGLAGRIVRVPIGAGEPVLPSKLS 114 (276)
T ss_pred cceeEEEEecccccCCcccccceeeeeccccCCCccccccccccchhhhccCceEeecccCCCcccHhhhc
Confidence 355788999999999999999998873344456665554 37899999999999999876664
No 289
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=80.46 E-value=52 Score=30.93 Aligned_cols=138 Identities=12% Similarity=0.104 Sum_probs=84.7
Q ss_pred CCHHHHHHHHHHHHHcCCceEeccCChhhHHHHHhCCCCEEEEcCC-CCCCHH--------HHHHHHhcCC---c---EE
Q psy17999 46 FSQEEYVMLQQCADQVDIMFTASAMDQVSFDFLLSANVPFIKIGSG-DSNNIP--------LIKYAASKQK---P---LI 110 (335)
Q Consensus 46 l~~e~~~~L~~~~~~~Gi~f~stpfd~~svd~l~~l~v~~~KIaS~-d~~n~~--------LL~~~a~~gk---P---vi 110 (335)
.+.+...++.+..+++.++++..|-+..++- -+.|++-+.|- +.+|.. -+..+.+.+. | +|
T Consensus 39 vt~~~~~~~v~~ik~~~lPvilfp~~~~~i~----~~aDa~l~~svlNs~~~~~iig~~~~~~~~~~~~~~e~ip~gYiv 114 (223)
T TIGR01768 39 VTYEKTDTLIEALRRYGLPIILFPSNPTNVS----RDADALFFPSVLNSDDPYWIIGAQIEAAPKFKKIGEEIIPEGYII 114 (223)
T ss_pred ccHHHHHHHHHHHhccCCCEEEeCCCccccC----cCCCEEEEEEeecCCCchHHHhHHHHHHHHHhhhcceecceEEEE
Confidence 5668888898999999999999998777654 35888888772 222322 2222333331 2 33
Q ss_pred EeCCCC-----------CCHHHHHHHHHHHHh-cCCCCceeecccCCCCCCCCcccccCceEEeeecCCCCCCccCCCch
Q psy17999 111 ISTGML-----------PSIEHVDNIYTTVKQ-YHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYPTPYHDINLN 178 (335)
Q Consensus 111 lStG~~-----------~tl~Ei~~Av~~i~~-g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~s~YP~~~~~~nL~ 178 (335)
|--|.+ .+.+|+..+...-.+ -+- +++-|--.|.|+.+ +|..
T Consensus 115 ~~~~~~v~~v~~a~~~p~~~~~~aa~~~lA~~~~g~-----------------------~~vYlE~gs~~g~~---v~~e 168 (223)
T TIGR01768 115 VNPGGAAARVTKAKPIPYDKEDLAAYAAMAEEMLGM-----------------------PIIYLEAGSGAPEP---VPPE 168 (223)
T ss_pred ECCCcceeecccccccCCCcHHHHHHHHHHHHHcCC-----------------------cEEEEEecCCCCCC---cCHH
Confidence 332211 145566555544443 111 56666666777654 6788
Q ss_pred HHHHHHHHCCCCCeecCCCCCChHHHHHHHHcCCc
Q psy17999 179 VIHTLRSRYPDIPIGYSGHENGVHVCYAAVAMGAQ 213 (335)
Q Consensus 179 ~i~~L~~~fp~~pVG~SdHt~g~~~~~aAvalGA~ 213 (335)
.+..+++...++|+-+.+=-.....+..+..+||+
T Consensus 169 ~i~~v~~~~~~~pl~vGGGIrs~e~a~~l~~aGAD 203 (223)
T TIGR01768 169 LVAEVKKVLDKARLFVGGGIRSVEKAREMAEAGAD 203 (223)
T ss_pred HHHHHHHHcCCCCEEEecCCCCHHHHHHHHHcCCC
Confidence 88899887756887554333335666667778998
No 290
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=80.41 E-value=48 Score=32.64 Aligned_cols=132 Identities=12% Similarity=0.161 Sum_probs=73.2
Q ss_pred CHHHHHHHHHHHHHcCCceEeccCChhhHHHHHhCCCCEEEE-----cCCCCCCHHHHHHHHh-----cCCcEEEeC--C
Q psy17999 47 SQEEYVMLQQCADQVDIMFTASAMDQVSFDFLLSANVPFIKI-----GSGDSNNIPLIKYAAS-----KQKPLIIST--G 114 (335)
Q Consensus 47 ~~e~~~~L~~~~~~~Gi~f~stpfd~~svd~l~~l~v~~~KI-----aS~d~~n~~LL~~~a~-----~gkPvilSt--G 114 (335)
+.+++.+..+.+++.|.+.+-== +|+|.-++ ||.-+++..++.++-+ .+.||.++. |
T Consensus 75 ~p~~~~~aA~~~~~~g~d~IdlN-----------~gCP~~~v~~~~~Gs~L~~~p~~~~eiv~avr~~v~~pVsvKiR~g 143 (333)
T PRK11815 75 DPADLAEAAKLAEDWGYDEINLN-----------VGCPSDRVQNGRFGACLMAEPELVADCVKAMKDAVSIPVTVKHRIG 143 (333)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEc-----------CCCCHHHccCCCeeeHHhcCHHHHHHHHHHHHHHcCCceEEEEEee
Confidence 45666666777766664433111 12333333 5667888877776544 478999864 4
Q ss_pred CC--CCHHHHHHHHHHHHhcCCCCceeecccCCCCCCCCcccccCceEEeeecC----CCCCC----ccCCCchHHHHHH
Q psy17999 115 ML--PSIEHVDNIYTTVKQYHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVS----AYPTP----YHDINLNVIHTLR 184 (335)
Q Consensus 115 ~~--~tl~Ei~~Av~~i~~g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~s----~YP~~----~~~~nL~~i~~L~ 184 (335)
.. .+.++..+.+..+...+. +...+|+-+ .|..+ ...+++..+..++
T Consensus 144 ~~~~~t~~~~~~~~~~l~~aG~-----------------------d~i~vh~Rt~~~~g~~~~~~~~~~~~~~~~i~~v~ 200 (333)
T PRK11815 144 IDDQDSYEFLCDFVDTVAEAGC-----------------------DTFIVHARKAWLKGLSPKENREIPPLDYDRVYRLK 200 (333)
T ss_pred eCCCcCHHHHHHHHHHHHHhCC-----------------------CEEEEcCCchhhcCCCccccccCCCcCHHHHHHHH
Confidence 32 123444455555554222 455566532 23211 1347888999999
Q ss_pred HHCCCCCeecCCCCCChHHHHHHHHcCCc
Q psy17999 185 SRYPDIPIGYSGHENGVHVCYAAVAMGAQ 213 (335)
Q Consensus 185 ~~fp~~pVG~SdHt~g~~~~~aAvalGA~ 213 (335)
+.++++||..++=-....-+..+.+ ||+
T Consensus 201 ~~~~~iPVI~nGgI~s~eda~~~l~-~aD 228 (333)
T PRK11815 201 RDFPHLTIEINGGIKTLEEAKEHLQ-HVD 228 (333)
T ss_pred HhCCCCeEEEECCcCCHHHHHHHHh-cCC
Confidence 8877899976654333333333333 555
No 291
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=80.41 E-value=21 Score=35.30 Aligned_cols=132 Identities=11% Similarity=0.116 Sum_probs=73.3
Q ss_pred CCCCcEEEeecccccccccccccCCCCCCC--CCCcccHHHHHHhhcCCHHHHHHHHHHHHHcCCceEeccC--------
Q psy17999 1 ECGADCVKFQKSCLSTKFTQSALDRPYLSP--HAWANTYGQHKQHLEFSQEEYVMLQQCADQVDIMFTASAM-------- 70 (335)
Q Consensus 1 ~aGaDaVKFQ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~el~~e~~~~L~~~~~~~Gi~f~stpf-------- 70 (335)
+||+|.|-...-.- -|+ .++..|+... ..|+.+ +.++..|..|=+..+++.+-.-=|.+=.++.
T Consensus 163 ~aGfDgVeih~ahG-yLl--~qFlSp~~N~R~D~yGGs---lenR~rf~~eii~air~~vg~d~v~vRis~~~~~~~~~~ 236 (338)
T cd02933 163 EAGFDGVEIHGANG-YLI--DQFLRDGSNKRTDEYGGS---IENRARFLLEVVDAVAEAIGADRVGIRLSPFGTFNDMGD 236 (338)
T ss_pred HcCCCEEEEccccc-hhH--HHhcCCccCCCCCcCCCc---HHHhhhHHHHHHHHHHHHhCCCceEEEECccccCCCCCC
Confidence 47999988764211 011 1222222211 124543 4456778888888888877431122222222
Q ss_pred --Ch----hhHHHHHhCCCCEEEEcCCCC------CCHHHHHHHHh-cCCcEEEeCCCCCCHHHHHHHHHHHHhcCCCCc
Q psy17999 71 --DQ----VSFDFLLSANVPFIKIGSGDS------NNIPLIKYAAS-KQKPLIISTGMLPSIEHVDNIYTTVKQYHSNLS 137 (335)
Q Consensus 71 --d~----~svd~l~~l~v~~~KIaS~d~------~n~~LL~~~a~-~gkPvilStG~~~tl~Ei~~Av~~i~~g~~~~~ 137 (335)
+. +-++.|++.|+|++-|..+.. .++++.+.+.+ ++.|||.+-| - +.++ |-+.+.++.. .
T Consensus 237 ~~~~ee~~~~~~~l~~~g~d~i~vs~g~~~~~~~~~~~~~~~~ik~~~~ipvi~~G~-i-~~~~---a~~~l~~g~~--D 309 (338)
T cd02933 237 SDPEATFSYLAKELNKRGLAYLHLVEPRVAGNPEDQPPDFLDFLRKAFKGPLIAAGG-Y-DAES---AEAALADGKA--D 309 (338)
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecCCCCCcccccchHHHHHHHHHcCCCEEEECC-C-CHHH---HHHHHHcCCC--C
Confidence 21 224566778999999965533 57888877766 5889888744 4 5444 4455555544 4
Q ss_pred eeecccCC
Q psy17999 138 ILHCVSAY 145 (335)
Q Consensus 138 ~~~c~~g~ 145 (335)
++.+-|+.
T Consensus 310 ~V~~gR~~ 317 (338)
T cd02933 310 LVAFGRPF 317 (338)
T ss_pred EEEeCHhh
Confidence 55555543
No 292
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=80.38 E-value=19 Score=33.74 Aligned_cols=87 Identities=13% Similarity=0.172 Sum_probs=57.9
Q ss_pred cCCHHHHHHHHHHHHHcCCceEe---cc---C-----C-----------hhhHHHHHhCCCCEEEEcCCCCC--------
Q psy17999 45 EFSQEEYVMLQQCADQVDIMFTA---SA---M-----D-----------QVSFDFLLSANVPFIKIGSGDSN-------- 94 (335)
Q Consensus 45 el~~e~~~~L~~~~~~~Gi~f~s---tp---f-----d-----------~~svd~l~~l~v~~~KIaS~d~~-------- 94 (335)
.++.+....+++.++++||.+.+ +. | | ..+++++..+|++.+.++++...
T Consensus 53 ~~~~~~~~~l~~~l~~~gl~i~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~lG~~~i~~~~~~~~~~~~~~~~ 132 (283)
T PRK13209 53 DWSREQRLALVNALVETGFRVNSMCLSAHRRFPLGSEDDAVRAQALEIMRKAIQLAQDLGIRVIQLAGYDVYYEQANNET 132 (283)
T ss_pred CCCHHHHHHHHHHHHHcCCceeEEecccccccCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECCccccccccHHHH
Confidence 45788899999999999999743 11 1 1 13457888899999999876421
Q ss_pred ------C-HHHHHHHHhcCCcEEEeCCCCCCHHHHHHHHHHHHh
Q psy17999 95 ------N-IPLIKYAASKQKPLIISTGMLPSIEHVDNIYTTVKQ 131 (335)
Q Consensus 95 ------n-~~LL~~~a~~gkPvilStG~~~tl~Ei~~Av~~i~~ 131 (335)
+ -.+++.+++.|..+.+-+.....+.....++++++.
T Consensus 133 ~~~~~~~l~~l~~~A~~~GV~i~iE~~~~~~~~~~~~~~~ll~~ 176 (283)
T PRK13209 133 RRRFIDGLKESVELASRASVTLAFEIMDTPFMNSISKALGYAHY 176 (283)
T ss_pred HHHHHHHHHHHHHHHHHhCCEEEEeecCCcccCCHHHHHHHHHH
Confidence 0 224455556799999987543233444556666655
No 293
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=80.25 E-value=38 Score=31.88 Aligned_cols=154 Identities=12% Similarity=0.162 Sum_probs=81.9
Q ss_pred hcCCHHHHHHHHHHHHHcCCceEeccCChhhHHHHHhCCCCEEEEcCCCCCCHHHHHHHHhc--CCc--EEEeCCCCCCH
Q psy17999 44 LEFSQEEYVMLQQCADQVDIMFTASAMDQVSFDFLLSANVPFIKIGSGDSNNIPLIKYAASK--QKP--LIISTGMLPSI 119 (335)
Q Consensus 44 ~el~~e~~~~L~~~~~~~Gi~f~stpfd~~svd~l~~l~v~~~KIaS~d~~n~~LL~~~a~~--gkP--vilStG~~~tl 119 (335)
..|+.++-..+.+...+.|+..+---|... .+...+++...-...+..++.+.+. +.. +++..|.. ..
T Consensus 17 ~~~~~~~k~~i~~~L~~~Gv~~iEvg~~~~-------~~~~~~~~~~~~~~~~e~i~~~~~~~~~~~~~~~~~~~~~-~~ 88 (263)
T cd07943 17 HQFTLEQVRAIARALDAAGVPLIEVGHGDG-------LGGSSLNYGFAAHTDEEYLEAAAEALKQAKLGVLLLPGIG-TV 88 (263)
T ss_pred eecCHHHHHHHHHHHHHcCCCEEEeecCCC-------CCCcccccCCCCCChHHHHHHHHHhccCCEEEEEecCCcc-CH
Confidence 568889999999888888877654332100 0001112223334466777777543 222 23334555 67
Q ss_pred HHHHHHHHHHHhcCCCCceeecccCCCCCCCCcccccCceEEeeecCCCCCCccCCCchHHHHHHHHCCCCCeec-----
Q psy17999 120 EHVDNIYTTVKQYHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYPTPYHDINLNVIHTLRSRYPDIPIGY----- 194 (335)
Q Consensus 120 ~Ei~~Av~~i~~g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~s~YP~~~~~~nL~~i~~L~~~fp~~pVG~----- 194 (335)
++++.|.+. |-. -+-+ ++ |....+.=...+...|+ . +..|-+
T Consensus 89 ~~i~~a~~~---g~~-----------------------~iri--~~---~~s~~~~~~~~i~~ak~-~-G~~v~~~~~~~ 135 (263)
T cd07943 89 DDLKMAADL---GVD-----------------------VVRV--AT---HCTEADVSEQHIGAARK-L-GMDVVGFLMMS 135 (263)
T ss_pred HHHHHHHHc---CCC-----------------------EEEE--Ee---chhhHHHHHHHHHHHHH-C-CCeEEEEEEec
Confidence 777766542 211 1111 11 11111111233344443 3 554422
Q ss_pred CCCCCC--hHHHHHHHHcCCcEEEeccCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q psy17999 195 SGHENG--VHVCYAAVAMGAQIIEKHFTLDKSWKGSDHASSLTPPELKALVTGIRD 248 (335)
Q Consensus 195 SdHt~g--~~~~~aAvalGA~vIEkH~tld~~~~G~Dh~~Sl~p~el~~lv~~ir~ 248 (335)
+.++.. ......+..+||+.|- + .|-.-+++|+++.++++.+++
T Consensus 136 ~~~~~~~~~~~~~~~~~~G~d~i~----l------~DT~G~~~P~~v~~lv~~l~~ 181 (263)
T cd07943 136 HMASPEELAEQAKLMESYGADCVY----V------TDSAGAMLPDDVRERVRALRE 181 (263)
T ss_pred cCCCHHHHHHHHHHHHHcCCCEEE----E------cCCCCCcCHHHHHHHHHHHHH
Confidence 122333 3345667888998764 3 277789999999999999985
No 294
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=80.24 E-value=33 Score=30.24 Aligned_cols=82 Identities=13% Similarity=0.107 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHcCCceEeccCCh------hhHHHHHhCCCCEEEEcCCCCCCHHHHHHHHhcCCcEEEeCCCC------
Q psy17999 49 EEYVMLQQCADQVDIMFTASAMDQ------VSFDFLLSANVPFIKIGSGDSNNIPLIKYAASKQKPLIISTGML------ 116 (335)
Q Consensus 49 e~~~~L~~~~~~~Gi~f~stpfd~------~svd~l~~l~v~~~KIaS~d~~n~~LL~~~a~~gkPvilStG~~------ 116 (335)
.....+.++++++|+.+.....+. +.++.+..-+++.+-+...+.+... ++.+.+.|.|||.-....
T Consensus 16 ~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iii~~~~~~~~~-~~~~~~~~ipvv~~~~~~~~~~~~ 94 (264)
T cd06267 16 ELLRGIEEAAREAGYSVLLCNSDEDPEKEREALELLLSRRVDGIILAPSRLDDEL-LEELAALGIPVVLVDRPLDGLGVD 94 (264)
T ss_pred HHHHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCcCEEEEecCCcchHH-HHHHHHcCCCEEEecccccCCCCC
Confidence 456778888888888877665543 2344555668999999988887777 888888899987653321
Q ss_pred ----CCHHHHHHHHHHHHh
Q psy17999 117 ----PSIEHVDNIYTTVKQ 131 (335)
Q Consensus 117 ----~tl~Ei~~Av~~i~~ 131 (335)
-..+-...+++.+..
T Consensus 95 ~v~~d~~~~g~~~~~~l~~ 113 (264)
T cd06267 95 SVGIDNRAGAYLAVEHLIE 113 (264)
T ss_pred EEeeccHHHHHHHHHHHHH
Confidence 034445556666655
No 295
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=80.18 E-value=41 Score=31.70 Aligned_cols=121 Identities=10% Similarity=0.061 Sum_probs=74.8
Q ss_pred HHHHHHHHHHc-CCceEeccCChhhHHHHHhCCCCEEEEcCCCCCCHHHHHHHHhcCCcEEEeC----C----------C
Q psy17999 51 YVMLQQCADQV-DIMFTASAMDQVSFDFLLSANVPFIKIGSGDSNNIPLIKYAASKQKPLIIST----G----------M 115 (335)
Q Consensus 51 ~~~L~~~~~~~-Gi~f~stpfd~~svd~l~~l~v~~~KIaS~d~~n~~LL~~~a~~gkPvilSt----G----------~ 115 (335)
+..+.+.++.. -+.+---+-+.++++.+.++|++.+-|+|.-+.|..+++++++.+--+++|- | .
T Consensus 63 ~~~i~~i~~~~~~v~vGGGIrs~e~~~~~l~~Ga~rvvigT~a~~~p~~l~~~~~~~~~ivvslD~k~g~v~~~gw~~~~ 142 (241)
T PRK14114 63 LPVLEKLSEFAEHIQIGGGIRSLDYAEKLRKLGYRRQIVSSKVLEDPSFLKFLKEIDVEPVFSLDTRGGKVAFKGWLAEE 142 (241)
T ss_pred HHHHHHHHhhcCcEEEecCCCCHHHHHHHHHCCCCEEEECchhhCCHHHHHHHHHhCCCEEEEEEccCCEEeeCCCeecC
Confidence 44444555543 3344446678899999999999999999999999999999987654466642 1 1
Q ss_pred CCCHHHHHHHHHHHHh-cCCCCceeecccCCCCCCCCcccccCceEEeeecCCCCCCccCCCchHHHHHHHHCCCCCeec
Q psy17999 116 LPSIEHVDNIYTTVKQ-YHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYPTPYHDINLNVIHTLRSRYPDIPIGY 194 (335)
Q Consensus 116 ~~tl~Ei~~Av~~i~~-g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~s~YP~~~~~~nL~~i~~L~~~fp~~pVG~ 194 (335)
..++.|+.+ .+.+ |-. .+++.+ ++.==+ ..-.|+..+..+++.. ++||-.
T Consensus 143 ~~~~~e~~~---~~~~~g~~--~ii~td----------------------I~rdGt-~~G~d~el~~~l~~~~-~~pvia 193 (241)
T PRK14114 143 EIDPVSLLK---RLKEYGLE--EIVHTE----------------------IEKDGT-LQEHDFSLTRKIAIEA-EVKVFA 193 (241)
T ss_pred CCCHHHHHH---HHHhcCCC--EEEEEe----------------------echhhc-CCCcCHHHHHHHHHHC-CCCEEE
Confidence 112333333 3333 322 222221 110001 1337888899999886 899988
Q ss_pred CCCCCC
Q psy17999 195 SGHENG 200 (335)
Q Consensus 195 SdHt~g 200 (335)
|+=-.+
T Consensus 194 sGGv~s 199 (241)
T PRK14114 194 AGGISS 199 (241)
T ss_pred ECCCCC
Confidence 874444
No 296
>TIGR01064 pyruv_kin pyruvate kinase. This enzyme is a homotetramer. Some forms are active only in the presence of fructose-1,6-bisphosphate or similar phosphorylated sugars.
Probab=80.16 E-value=9.2 Score=39.67 Aligned_cols=88 Identities=16% Similarity=0.204 Sum_probs=63.3
Q ss_pred CHHHHHHHHHHHHHcC---CceEeccCChhhHHHHHhC-C-CCEEEEcCCCCCC-----------HHHHHHHHhcCCcEE
Q psy17999 47 SQEEYVMLQQCADQVD---IMFTASAMDQVSFDFLLSA-N-VPFIKIGSGDSNN-----------IPLIKYAASKQKPLI 110 (335)
Q Consensus 47 ~~e~~~~L~~~~~~~G---i~f~stpfd~~svd~l~~l-~-v~~~KIaS~d~~n-----------~~LL~~~a~~gkPvi 110 (335)
+.++...+.++..+.| +.+++-.-+.++++-+.++ . .|.+-+|.+|+.. -.++.++.+.|+|+|
T Consensus 195 sa~dv~~l~~~l~~~~~~~~~Iia~IEt~~av~nl~eI~~~~dgi~iG~gDL~~~lg~~~l~~~~~~ii~aaraag~pvi 274 (473)
T TIGR01064 195 TAEDVLEVREVLGEKGAKDVKIIAKIENQEGVDNIDEIAEASDGIMVARGDLGVEIPAEEVPIAQKKMIRKCNRAGKPVI 274 (473)
T ss_pred CHHHHHHHHHHHHhcCCCCceEEEEECCHHHHHhHHHHHhhCCcEEEchHHHHhhcCcHHHHHHHHHHHHHHHHcCCCEE
Confidence 5577888888877654 6677777777776655542 1 5899999988754 123445567899999
Q ss_pred EeC-------C-CCCCHHHHHHHHHHHHhcCC
Q psy17999 111 IST-------G-MLPSIEHVDNIYTTVKQYHS 134 (335)
Q Consensus 111 lSt-------G-~~~tl~Ei~~Av~~i~~g~~ 134 (335)
+.| + ..||-+|+..+.+.+..|..
T Consensus 275 ~atqmLeSM~~~p~PTRAe~~dv~~~v~~G~d 306 (473)
T TIGR01064 275 TATQMLDSMIKNPRPTRAEVSDVANAILDGTD 306 (473)
T ss_pred EEChhhhhhhcCCCCCcccHHHHHHHHHcCCC
Confidence 999 5 34788899999888877643
No 297
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=79.99 E-value=16 Score=35.76 Aligned_cols=77 Identities=13% Similarity=0.136 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHcCCceEecc----CChhhHHHHHhCCCCEEEEcCCCC----------------------CC-----HHH
Q psy17999 50 EYVMLQQCADQVDIMFTASA----MDQVSFDFLLSANVPFIKIGSGDS----------------------NN-----IPL 98 (335)
Q Consensus 50 ~~~~L~~~~~~~Gi~f~stp----fd~~svd~l~~l~v~~~KIaS~d~----------------------~n-----~~L 98 (335)
+...|.+..+..+++++.-- .+.+.+..|.+.|+|++-|++.-= .+ ...
T Consensus 166 ~~~~i~~l~~~~~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~vsG~GGt~~~~ie~~r~~~~~~~~~~~~~~~g~~t~~~ 245 (326)
T cd02811 166 WLERIEELVKALSVPVIVKEVGFGISRETAKRLADAGVKAIDVAGAGGTSWARVENYRAKDSDQRLAEYFADWGIPTAAS 245 (326)
T ss_pred HHHHHHHHHHhcCCCEEEEecCCCCCHHHHHHHHHcCCCEEEECCCCCCcccccccccccccccccccccccccccHHHH
Confidence 34678888888888888732 567888999999999999865311 11 124
Q ss_pred HHHHHh-c-CCcEEEeCCCCCCHHHHHHHHH
Q psy17999 99 IKYAAS-K-QKPLIISTGMLPSIEHVDNIYT 127 (335)
Q Consensus 99 L~~~a~-~-gkPvilStG~~~tl~Ei~~Av~ 127 (335)
|..+.+ . +.|||.+-|.. +-.++.+|+.
T Consensus 246 l~~~~~~~~~ipIiasGGIr-~~~dv~kal~ 275 (326)
T cd02811 246 LLEVRSALPDLPLIASGGIR-NGLDIAKALA 275 (326)
T ss_pred HHHHHHHcCCCcEEEECCCC-CHHHHHHHHH
Confidence 444444 3 79999999999 9999998866
No 298
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=79.94 E-value=61 Score=31.75 Aligned_cols=134 Identities=16% Similarity=0.122 Sum_probs=70.6
Q ss_pred HHHHHhCCCCEEEEcCCCCCCHHHHHHHHhcCCcEEEeCCCCCCHHHHHHHHHHHHhcCCCCceeecccCCCCCCCCccc
Q psy17999 75 FDFLLSANVPFIKIGSGDSNNIPLIKYAASKQKPLIISTGMLPSIEHVDNIYTTVKQYHSNLSILHCVSAYPTPYPTVKQ 154 (335)
Q Consensus 75 vd~l~~l~v~~~KIaS~d~~n~~LL~~~a~~gkPvilStG~~~tl~Ei~~Av~~i~~g~~~~~~~~c~~g~~~~~~~~~~ 154 (335)
++.+.+.+++++-.+-+.- ..++++.+-..|..|+...+ |.++...+.+ .|- .++. ..|.-.|.|.-
T Consensus 106 ~~~~~~~~~~~v~~~~G~p-~~~~i~~l~~~gi~v~~~v~---s~~~A~~a~~---~G~---D~iv-~qG~eAGGH~g-- 172 (330)
T PF03060_consen 106 LDVALEAKPDVVSFGFGLP-PPEVIERLHAAGIKVIPQVT---SVREARKAAK---AGA---DAIV-AQGPEAGGHRG-- 172 (330)
T ss_dssp HHHHHHS--SEEEEESSSC--HHHHHHHHHTT-EEEEEES---SHHHHHHHHH---TT----SEEE-EE-TTSSEE----
T ss_pred cccccccceEEEEeecccc-hHHHHHHHHHcCCccccccC---CHHHHHHhhh---cCC---CEEE-EeccccCCCCC--
Confidence 3344444555887766653 36788999999999998877 7777666543 242 2333 33554444311
Q ss_pred ccCceEEeeecCCCCCCccCCCchHHHHHHHHCCCCCeecCCCCCChHHHHHHHHcCCc--EEEeccCCCCCCCCCCCCC
Q psy17999 155 YHSNLSILHCVSAYPTPYHDINLNVIHTLRSRYPDIPIGYSGHENGVHVCYAAVAMGAQ--IIEKHFTLDKSWKGSDHAS 232 (335)
Q Consensus 155 ~~~~l~llHC~s~YP~~~~~~nL~~i~~L~~~fp~~pVG~SdHt~g~~~~~aAvalGA~--vIEkH~tld~~~~G~Dh~~ 232 (335)
.+.. --+.-++.+++.. ++||.-++=-....-..+|.+|||+ .+=.-|-.-+.
T Consensus 173 ---------------~~~~-~~~~L~~~v~~~~-~iPViaAGGI~dg~~iaaal~lGA~gV~~GTrFl~t~E-------- 227 (330)
T PF03060_consen 173 ---------------FEVG-STFSLLPQVRDAV-DIPVIAAGGIADGRGIAAALALGADGVQMGTRFLATEE-------- 227 (330)
T ss_dssp ----------------SSG--HHHHHHHHHHH--SS-EEEESS--SHHHHHHHHHCT-SEEEESHHHHTSTT--------
T ss_pred ---------------cccc-ceeeHHHHHhhhc-CCcEEEecCcCCHHHHHHHHHcCCCEeecCCeEEeccc--------
Confidence 0111 2255577888888 7999765544334455688999998 33344443222
Q ss_pred CCCHHHHHHHHHHH
Q psy17999 233 SLTPPELKALVTGI 246 (335)
Q Consensus 233 Sl~p~el~~lv~~i 246 (335)
|-.++.+++++-+.
T Consensus 228 s~~~~~~K~~l~~a 241 (330)
T PF03060_consen 228 SGASDAYKQALVDA 241 (330)
T ss_dssp S-S-HHHHHHHHHG
T ss_pred ccChHHHHHHHHhC
Confidence 23345777766554
No 299
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=79.74 E-value=16 Score=36.77 Aligned_cols=96 Identities=10% Similarity=0.121 Sum_probs=61.6
Q ss_pred CHHHHHHHHh-cCCcEEEeCCCCCCHHHHHHHHHHHHhcCCCCceeecccCCCCCCCCcccccCceEEeeecCCCCCCcc
Q psy17999 95 NIPLIKYAAS-KQKPLIISTGMLPSIEHVDNIYTTVKQYHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYPTPYH 173 (335)
Q Consensus 95 n~~LL~~~a~-~gkPvilStG~~~tl~Ei~~Av~~i~~g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~s~YP~~~~ 173 (335)
.|..|+.+-+ ++.|||++ |.. +.++...|++. |-. -|+.+-.|-. ++ ..+|.
T Consensus 224 ~w~~i~~ir~~~~~pviiK-gV~-~~eda~~a~~~---G~d--~I~VSnhGGr-----------ql------d~~~~--- 276 (361)
T cd04736 224 NWQDLRWLRDLWPHKLLVK-GIV-TAEDAKRCIEL---GAD--GVILSNHGGR-----------QL------DDAIA--- 276 (361)
T ss_pred CHHHHHHHHHhCCCCEEEe-cCC-CHHHHHHHHHC---CcC--EEEECCCCcC-----------CC------cCCcc---
Confidence 4778888776 47899999 777 89988888764 433 2333333322 11 01222
Q ss_pred CCCchHHHHHHHHCCCCCeecCCCCCChHHHHHHHHcCCc--EEEeccC
Q psy17999 174 DINLNVIHTLRSRYPDIPIGYSGHENGVHVCYAAVAMGAQ--IIEKHFT 220 (335)
Q Consensus 174 ~~nL~~i~~L~~~fp~~pVG~SdHt~g~~~~~aAvalGA~--vIEkH~t 220 (335)
.+..+..+++.+ ++||..++.-....=.+-|.+|||+ +|=+.|-
T Consensus 277 --~~~~L~ei~~~~-~~~vi~dGGIr~g~Dv~KALaLGA~aV~iGr~~l 322 (361)
T cd04736 277 --PIEALAEIVAAT-YKPVLIDSGIRRGSDIVKALALGANAVLLGRATL 322 (361)
T ss_pred --HHHHHHHHHHHh-CCeEEEeCCCCCHHHHHHHHHcCCCEEEECHHHH
Confidence 367788888888 7998766555433334469999998 5666554
No 300
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=79.67 E-value=13 Score=38.65 Aligned_cols=78 Identities=14% Similarity=0.117 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHc--CCceEec-cCChhhHHHHHhCCCCEEEEcCC--CCCC------------HH---HHHHHHhcCCcE
Q psy17999 50 EYVMLQQCADQV--DIMFTAS-AMDQVSFDFLLSANVPFIKIGSG--DSNN------------IP---LIKYAASKQKPL 109 (335)
Q Consensus 50 ~~~~L~~~~~~~--Gi~f~st-pfd~~svd~l~~l~v~~~KIaS~--d~~n------------~~---LL~~~a~~gkPv 109 (335)
....+.+..++. ++++++- +.+.+.+..|.+.|+|++||+-+ .+.+ .+ +.+++.+.+.||
T Consensus 252 ~~~~~i~~i~~~~~~~~vi~g~~~t~~~~~~l~~~G~d~i~vg~g~Gs~~ttr~~~~~g~~~~~a~~~~~~~~~~~~~~v 331 (475)
T TIGR01303 252 KMISAIKAVRALDLGVPIVAGNVVSAEGVRDLLEAGANIIKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAEARKLGGHV 331 (475)
T ss_pred HHHHHHHHHHHHCCCCeEEEeccCCHHHHHHHHHhCCCEEEECCcCCccccCccccCCCCchHHHHHHHHHHHHHcCCcE
Confidence 344555555555 8999998 89999999999999999996543 2222 12 223335568999
Q ss_pred EEeCCCCCCHHHHHHHHHH
Q psy17999 110 IISTGMLPSIEHVDNIYTT 128 (335)
Q Consensus 110 ilStG~~~tl~Ei~~Av~~ 128 (335)
|-+=|.. +..+|.+|+..
T Consensus 332 iadGgi~-~~~di~kala~ 349 (475)
T TIGR01303 332 WADGGVR-HPRDVALALAA 349 (475)
T ss_pred EEeCCCC-CHHHHHHHHHc
Confidence 9999999 99999998763
No 301
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=79.65 E-value=19 Score=33.56 Aligned_cols=87 Identities=15% Similarity=0.160 Sum_probs=55.9
Q ss_pred cCCHHHHHHHHHHHHHcCCceEecc------C-----C-----------hhhHHHHHhCCCCEEEEcCCCCC----C---
Q psy17999 45 EFSQEEYVMLQQCADQVDIMFTASA------M-----D-----------QVSFDFLLSANVPFIKIGSGDSN----N--- 95 (335)
Q Consensus 45 el~~e~~~~L~~~~~~~Gi~f~stp------f-----d-----------~~svd~l~~l~v~~~KIaS~d~~----n--- 95 (335)
.++.+...+|++.++++||.+.+.. | | ...++.+..+|++.+.+++.... +
T Consensus 48 ~~~~~~~~~l~~~l~~~Gl~i~~~~~~~~~~~~~~~~d~~~r~~~~~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~ 127 (284)
T PRK13210 48 DWSKEERLSLVKAIYETGVRIPSMCLSGHRRFPFGSRDPATRERALEIMKKAIRLAQDLGIRTIQLAGYDVYYEEKSEET 127 (284)
T ss_pred cCCHHHHHHHHHHHHHcCCCceEEecccccCcCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEEECCcccccccccHHH
Confidence 4567889999999999999986531 1 2 24566778899999998765321 1
Q ss_pred --------HHHHHHHHhcCCcEEEeCCCCCCHHHHHHHHHHHHh
Q psy17999 96 --------IPLIKYAASKQKPLIISTGMLPSIEHVDNIYTTVKQ 131 (335)
Q Consensus 96 --------~~LL~~~a~~gkPvilStG~~~tl~Ei~~Av~~i~~ 131 (335)
..+.+.+++.|..+.+-+.....+.....+..+++.
T Consensus 128 ~~~~~~~l~~l~~~a~~~gv~l~lE~~~~~~~~~~~~~~~l~~~ 171 (284)
T PRK13210 128 RQRFIEGLAWAVEQAAAAQVMLAVEIMDTPFMNSISKWKKWDKE 171 (284)
T ss_pred HHHHHHHHHHHHHHHHHhCCEEEEEecCccccCCHHHHHHHHHH
Confidence 224455556788999987533123333444444444
No 302
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=79.59 E-value=53 Score=30.51 Aligned_cols=74 Identities=8% Similarity=0.037 Sum_probs=50.3
Q ss_pred cCCHHHH----HHHHHHHHHcCCceEeccCChhhHHHHHhCCCCEEEEcCCCCCCHHHHHHHHhcCCcEEEeCC-CCCCH
Q psy17999 45 EFSQEEY----VMLQQCADQVDIMFTASAMDQVSFDFLLSANVPFIKIGSGDSNNIPLIKYAASKQKPLIISTG-MLPSI 119 (335)
Q Consensus 45 el~~e~~----~~L~~~~~~~Gi~f~stpfd~~svd~l~~l~v~~~KIaS~d~~n~~LL~~~a~~gkPvilStG-~~~tl 119 (335)
.++.+++ ++|.+.|+++|+.|+.. | .++....++.|.+-++..++. +-+.-...+.-.||... .+ +.
T Consensus 50 ~l~~~~~~~~a~~l~~l~~~~gv~liIN--d--~~dlA~~~~adGVHLg~~d~~---~~~~r~~~~~~~iiG~s~~~-s~ 121 (221)
T PRK06512 50 GLDEATFQKQAEKLVPVIQEAGAAALIA--G--DSRIAGRVKADGLHIEGNLAA---LAEAIEKHAPKMIVGFGNLR-DR 121 (221)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCEEEEe--C--HHHHHHHhCCCEEEECccccC---HHHHHHhcCCCCEEEecCCC-CH
Confidence 4666654 77889999999999876 3 488888999999999988753 22222223334566643 34 67
Q ss_pred HHHHHHH
Q psy17999 120 EHVDNIY 126 (335)
Q Consensus 120 ~Ei~~Av 126 (335)
++..+|.
T Consensus 122 ~~a~~A~ 128 (221)
T PRK06512 122 HGAMEIG 128 (221)
T ss_pred HHHHHhh
Confidence 7766654
No 303
>PRK06635 aspartate kinase; Reviewed
Probab=79.57 E-value=26 Score=34.95 Aligned_cols=40 Identities=15% Similarity=0.258 Sum_probs=28.8
Q ss_pred EEEEcCCCCCCHHHHHHHHh-------c-CCcEEEeCCCCCCHHHHHH
Q psy17999 85 FIKIGSGDSNNIPLIKYAAS-------K-QKPLIISTGMLPSIEHVDN 124 (335)
Q Consensus 85 ~~KIaS~d~~n~~LL~~~a~-------~-gkPvilStG~~~tl~Ei~~ 124 (335)
.+|+|+.-+.|...++.+++ . .+||++..|++...++..+
T Consensus 5 ViK~GGs~l~~~~~~~~~~~~i~~~~~~g~~~vvV~sg~~~~~~~l~~ 52 (404)
T PRK06635 5 VQKFGGTSVGDVERIKRVAERVKAEVEAGHQVVVVVSAMGGTTDELLD 52 (404)
T ss_pred EEeECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCCcHHHHHH
Confidence 68999999999888777663 2 3688888876545555433
No 304
>PRK06247 pyruvate kinase; Provisional
Probab=79.12 E-value=11 Score=39.21 Aligned_cols=86 Identities=21% Similarity=0.254 Sum_probs=61.0
Q ss_pred CHHHHHHHHHHHHHcCCceEeccCChhhHHHHH---hCCCCEEEEcCCCCCC-----------HHHHHHHHhcCCcEEEe
Q psy17999 47 SQEEYVMLQQCADQVDIMFTASAMDQVSFDFLL---SANVPFIKIGSGDSNN-----------IPLIKYAASKQKPLIIS 112 (335)
Q Consensus 47 ~~e~~~~L~~~~~~~Gi~f~stpfd~~svd~l~---~l~v~~~KIaS~d~~n-----------~~LL~~~a~~gkPvilS 112 (335)
+.++..++++++.+ .+.+++-.-+.++++-+. +. +|.+-||-+||.- -.+++.+.+.|||+|+.
T Consensus 197 ~a~Di~~~r~~l~~-~~~iiaKIEt~eav~nldeI~~~-~DgImVaRGDLgve~g~~~v~~~qk~ii~~~~~~gkpvI~A 274 (476)
T PRK06247 197 RPEDVEEVRKIIGG-RVPVMAKIEKPQAIDRLEAIVEA-SDAIMVARGDLGVEVPLEQVPLIQKRIIRAARRAGKPVVVA 274 (476)
T ss_pred CHHHHHHHHHHhhh-cCeEEEEECCHHHHHhHHHHHHH-cCEEEEccchhccccCHHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 45666777777654 456666666666665444 34 8999999998853 23445555679999999
Q ss_pred CCC--------CCCHHHHHHHHHHHHhcCC
Q psy17999 113 TGM--------LPSIEHVDNIYTTVKQYHS 134 (335)
Q Consensus 113 tG~--------~~tl~Ei~~Av~~i~~g~~ 134 (335)
|=| .||-+|+-..++.+..|..
T Consensus 275 TQmLeSM~~np~PTRAEvtDVaNAV~dG~D 304 (476)
T PRK06247 275 TQMLESMIENPVPTRAEVSDVATAVLDGAD 304 (476)
T ss_pred CchHHHhhcCCCCCcchhHHHHHHHHhCCc
Confidence 875 3788999999998887654
No 305
>TIGR03855 NAD_NadX aspartate dehydrogenase. Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur.
Probab=79.10 E-value=12 Score=35.18 Aligned_cols=74 Identities=12% Similarity=0.120 Sum_probs=54.3
Q ss_pred HHHHHHHHcCCceEeccCChhhHHHHHhCCCCEEEEcCCCCCCHHHHHHHHhcCCcEEEeCCCC-CCHHHHHHHHHHHHh
Q psy17999 53 MLQQCADQVDIMFTASAMDQVSFDFLLSANVPFIKIGSGDSNNIPLIKYAASKQKPLIISTGML-PSIEHVDNIYTTVKQ 131 (335)
Q Consensus 53 ~L~~~~~~~Gi~f~stpfd~~svd~l~~l~v~~~KIaS~d~~n~~LL~~~a~~gkPvilStG~~-~tl~Ei~~Av~~i~~ 131 (335)
...++++++|+.+.. +++.+.+-++|++-|++..-.+.++..++.+.||+|++-.-++ .+.++.++.++..++
T Consensus 14 ~a~~~a~~~g~~~~~------d~~eLl~~~vDaVviatp~~~H~e~a~~aL~aGkhVl~~s~gAlad~e~~~~l~~aA~~ 87 (229)
T TIGR03855 14 DAKELAERCGAKIVS------DFDEFLPEDVDIVVEAASQEAVKEYAEKILKNGKDLLIMSVGALADRELRERLREVARS 87 (229)
T ss_pred HHHHHHHHhCCceEC------CHHHHhcCCCCEEEECCChHHHHHHHHHHHHCCCCEEEECCcccCCHHHHHHHHHHHHh
Confidence 345666777865432 3444444569999999999999999999999999988854332 277788877777776
Q ss_pred c
Q psy17999 132 Y 132 (335)
Q Consensus 132 g 132 (335)
.
T Consensus 88 ~ 88 (229)
T TIGR03855 88 S 88 (229)
T ss_pred c
Confidence 3
No 306
>cd06285 PBP1_LacI_like_7 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=79.06 E-value=44 Score=30.13 Aligned_cols=84 Identities=11% Similarity=0.097 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHcCCceEeccC--Chh----hHHHHHhCCCCEEEEcCCCCCCHHHHHHHHhcCCcEEEe---------C
Q psy17999 49 EEYVMLQQCADQVDIMFTASAM--DQV----SFDFLLSANVPFIKIGSGDSNNIPLIKYAASKQKPLIIS---------T 113 (335)
Q Consensus 49 e~~~~L~~~~~~~Gi~f~stpf--d~~----svd~l~~l~v~~~KIaS~d~~n~~LL~~~a~~gkPvilS---------t 113 (335)
+-...+.+.++++|..++..+. |.. .++.+...++|.+-|.+.+. +.+.++.+.+.+.||++- .
T Consensus 16 ~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~dgiii~~~~~-~~~~~~~~~~~~iPvv~~~~~~~~~~~V 94 (265)
T cd06285 16 TMYEGIEEAAAERGYSTFVANTGDNPDAQRRAIEMLLDRRVDGLILGDARS-DDHFLDELTRRGVPFVLVLRHAGTSPAV 94 (265)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCCC-ChHHHHHHHHcCCCEEEEccCCCCCCEE
Confidence 4467788899999988665333 332 24455667899988877654 446788888889998762 2
Q ss_pred CCCCCHHHHHHHHHHHHh-cCC
Q psy17999 114 GMLPSIEHVDNIYTTVKQ-YHS 134 (335)
Q Consensus 114 G~~~tl~Ei~~Av~~i~~-g~~ 134 (335)
+.- .-+-...|++++.. |+.
T Consensus 95 ~~d-~~~ag~~a~~~L~~~g~~ 115 (265)
T cd06285 95 TGD-DVLGGRLATRHLLDLGHR 115 (265)
T ss_pred EeC-cHHHHHHHHHHHHHCCCc
Confidence 223 34444556777765 544
No 307
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=79.01 E-value=17 Score=33.28 Aligned_cols=52 Identities=19% Similarity=0.140 Sum_probs=41.6
Q ss_pred HHHHHhCCCCEEEEcCCC------CCCHHHHHHHHhc-CCcEEEeCCCCCCHHHHHHHHH
Q psy17999 75 FDFLLSANVPFIKIGSGD------SNNIPLIKYAASK-QKPLIISTGMLPSIEHVDNIYT 127 (335)
Q Consensus 75 vd~l~~l~v~~~KIaS~d------~~n~~LL~~~a~~-gkPvilStG~~~tl~Ei~~Av~ 127 (335)
+..+.+.|++.+-+.+.+ -.|+++++++.+. +.|||.+-|.. +++++.+++.
T Consensus 159 ~~~~~~~G~d~i~i~~i~~~g~~~g~~~~~~~~i~~~~~ipvia~GGi~-s~~di~~~l~ 217 (232)
T TIGR03572 159 AREAEQLGAGEILLNSIDRDGTMKGYDLELIKTVSDAVSIPVIALGGAG-SLDDLVEVAL 217 (232)
T ss_pred HHHHHHcCCCEEEEeCCCccCCcCCCCHHHHHHHHhhCCCCEEEECCCC-CHHHHHHHHH
Confidence 456667889988877732 2579999999864 89999999999 9999998554
No 308
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=79.00 E-value=39 Score=34.99 Aligned_cols=122 Identities=14% Similarity=0.137 Sum_probs=70.3
Q ss_pred ccCChhhHHHHHhCCCCEEEEcCCCC---CCHHHHHHHHhc--CCcEEEeCCCCCCHHHHHHHHHHHHhcCCCCceeecc
Q psy17999 68 SAMDQVSFDFLLSANVPFIKIGSGDS---NNIPLIKYAASK--QKPLIISTGMLPSIEHVDNIYTTVKQYHSNLSILHCV 142 (335)
Q Consensus 68 tpfd~~svd~l~~l~v~~~KIaS~d~---~n~~LL~~~a~~--gkPvilStG~~~tl~Ei~~Av~~i~~g~~~~~~~~c~ 142 (335)
.|.+.+.++.|.+.|++++-+-+.+- .-+.+++.+.+. +.|||+..++ |.++...+++. |.. ++-
T Consensus 226 ~~~~~e~a~~L~~agvdvivvD~a~g~~~~vl~~i~~i~~~~p~~~vi~g~v~--t~e~a~~l~~a---Gad---~i~-- 295 (486)
T PRK05567 226 GADNEERAEALVEAGVDVLVVDTAHGHSEGVLDRVREIKAKYPDVQIIAGNVA--TAEAARALIEA---GAD---AVK-- 295 (486)
T ss_pred CcchHHHHHHHHHhCCCEEEEECCCCcchhHHHHHHHHHhhCCCCCEEEeccC--CHHHHHHHHHc---CCC---EEE--
Confidence 36678889999999999998876432 234455666554 6799995554 57777666542 433 111
Q ss_pred cCCCCCCCCcccccCceEEeeecCCCCCCccCCCchHHHHHHH---HCCCCCeecCCCCCChHHHHHHHHcCCc
Q psy17999 143 SAYPTPYPTVKQYHSNLSILHCVSAYPTPYHDINLNVIHTLRS---RYPDIPIGYSGHENGVHVCYAAVAMGAQ 213 (335)
Q Consensus 143 ~g~~~~~~~~~~~~~~l~llHC~s~YP~~~~~~nL~~i~~L~~---~fp~~pVG~SdHt~g~~~~~aAvalGA~ 213 (335)
-|+..+ =.|++.--+...-..+.++..+++ .+ ++||.-++--....-..-|+++||+
T Consensus 296 vg~g~g-------------s~~~~r~~~~~g~p~~~~~~~~~~~~~~~-~~~viadGGi~~~~di~kAla~GA~ 355 (486)
T PRK05567 296 VGIGPG-------------SICTTRIVAGVGVPQITAIADAAEAAKKY-GIPVIADGGIRYSGDIAKALAAGAS 355 (486)
T ss_pred ECCCCC-------------ccccceeecCCCcCHHHHHHHHHHHhccC-CCeEEEcCCCCCHHHHHHHHHhCCC
Confidence 122100 023333222222234556655544 34 7888665555445555679999998
No 309
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=78.81 E-value=40 Score=35.11 Aligned_cols=127 Identities=16% Similarity=0.155 Sum_probs=73.7
Q ss_pred CCceEeccCChhhHHHHHhCCCCEEEEcCCCCCCHHHHH---HHHhc--CCcEEEeCCCCCCHHHHHHHHHHHHhcCCCC
Q psy17999 62 DIMFTASAMDQVSFDFLLSANVPFIKIGSGDSNNIPLIK---YAASK--QKPLIISTGMLPSIEHVDNIYTTVKQYHSNL 136 (335)
Q Consensus 62 Gi~f~stpfd~~svd~l~~l~v~~~KIaS~d~~n~~LL~---~~a~~--gkPvilStG~~~tl~Ei~~Av~~i~~g~~~~ 136 (335)
|-..-+...+.+-+..|.+.|++++-|-+.+-.+...++ ++-+. +.|||... .+ |.++...+++. |..
T Consensus 217 gaav~~~~~~~~ra~~Lv~aGVd~i~~D~a~g~~~~~~~~i~~i~~~~~~~~vi~g~-~~-t~~~~~~l~~~---G~d-- 289 (475)
T TIGR01303 217 GAAVGINGDVGGKAKALLDAGVDVLVIDTAHGHQVKMISAIKAVRALDLGVPIVAGN-VV-SAEGVRDLLEA---GAN-- 289 (475)
T ss_pred hheeeeCccHHHHHHHHHHhCCCEEEEeCCCCCcHHHHHHHHHHHHHCCCCeEEEec-cC-CHHHHHHHHHh---CCC--
Confidence 333444456677788888899999999998866655444 44444 68999933 34 78877776553 332
Q ss_pred ceeecccCCCCCCCCcccccCceEEeeecCCCCCCcc----CCCchHHHHHHHHCCCCCeecCCCCCChHHHHHHHHcCC
Q psy17999 137 SILHCVSAYPTPYPTVKQYHSNLSILHCVSAYPTPYH----DINLNVIHTLRSRYPDIPIGYSGHENGVHVCYAAVAMGA 212 (335)
Q Consensus 137 ~~~~c~~g~~~~~~~~~~~~~~l~llHC~s~YP~~~~----~~nL~~i~~L~~~fp~~pVG~SdHt~g~~~~~aAvalGA 212 (335)
.+- =|+..| -+ |++.+-+..- ...+.....++ .+ ++||.=++.-.-..-..-|.++||
T Consensus 290 -~i~--vg~g~G---------s~----~ttr~~~~~g~~~~~a~~~~~~~~~-~~-~~~viadGgi~~~~di~kala~GA 351 (475)
T TIGR01303 290 -IIK--VGVGPG---------AM----CTTRMMTGVGRPQFSAVLECAAEAR-KL-GGHVWADGGVRHPRDVALALAAGA 351 (475)
T ss_pred -EEE--ECCcCC---------cc----ccCccccCCCCchHHHHHHHHHHHH-Hc-CCcEEEeCCCCCHHHHHHHHHcCC
Confidence 111 011111 11 4444444432 23333333444 46 789865554444555566889999
Q ss_pred c
Q psy17999 213 Q 213 (335)
Q Consensus 213 ~ 213 (335)
+
T Consensus 352 ~ 352 (475)
T TIGR01303 352 S 352 (475)
T ss_pred C
Confidence 8
No 310
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=78.71 E-value=19 Score=35.44 Aligned_cols=52 Identities=10% Similarity=0.110 Sum_probs=41.7
Q ss_pred HHHHHhCCCCEEEEcCCCC---------------CCHHHHHHHHhc--CCcEEEeCCCCCCHHHHHHHHH
Q psy17999 75 FDFLLSANVPFIKIGSGDS---------------NNIPLIKYAASK--QKPLIISTGMLPSIEHVDNIYT 127 (335)
Q Consensus 75 vd~l~~l~v~~~KIaS~d~---------------~n~~LL~~~a~~--gkPvilStG~~~tl~Ei~~Av~ 127 (335)
+..+++.|++++-|.+++- .++++++++.+. ..|||.+=|.. |++++.++++
T Consensus 157 ~~~l~~aG~d~i~vh~Rt~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~iPVI~nGgI~-s~eda~~~l~ 225 (333)
T PRK11815 157 VDTVAEAGCDTFIVHARKAWLKGLSPKENREIPPLDYDRVYRLKRDFPHLTIEINGGIK-TLEEAKEHLQ 225 (333)
T ss_pred HHHHHHhCCCEEEEcCCchhhcCCCccccccCCCcCHHHHHHHHHhCCCCeEEEECCcC-CHHHHHHHHh
Confidence 4556678999999987642 368899998874 79999999999 9999988765
No 311
>PRK04165 acetyl-CoA decarbonylase/synthase complex subunit gamma; Provisional
Probab=78.67 E-value=25 Score=36.36 Aligned_cols=81 Identities=12% Similarity=0.195 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHH-cCCceEeccCChhhHHHHHhCCCCE-EEEcCCCCCCHHHHHH-HHhcCCcEEEeCCCCCCHHHHHH
Q psy17999 48 QEEYVMLQQCADQ-VDIMFTASAMDQVSFDFLLSANVPF-IKIGSGDSNNIPLIKY-AASKQKPLIISTGMLPSIEHVDN 124 (335)
Q Consensus 48 ~e~~~~L~~~~~~-~Gi~f~stpfd~~svd~l~~l~v~~-~KIaS~d~~n~~LL~~-~a~~gkPvilStG~~~tl~Ei~~ 124 (335)
.+.+.++.+..++ .+++++..-+|.+.++...+.+.+. --|.|.+..|++-+-. +++.|.|++++- .+++...+
T Consensus 140 p~~v~~~Vk~V~~~~dvPLSIDT~dpevleaAleagad~~plI~Sat~dN~~~m~~la~~yg~pvVv~~---~dl~~L~~ 216 (450)
T PRK04165 140 PEKFAKAVKKVAETTDLPLILCSEDPAVLKAALEVVADRKPLLYAATKENYEEMAELAKEYNCPLVVKA---PNLEELKE 216 (450)
T ss_pred HHHHHHHHHHHHHhcCCCEEEeCCCHHHHHHHHHhcCCCCceEEecCcchHHHHHHHHHHcCCcEEEEc---hhHHHHHH
Confidence 4556666666665 7999999999999999988877652 2344555567775544 555699999943 24677777
Q ss_pred HHHHHHh
Q psy17999 125 IYTTVKQ 131 (335)
Q Consensus 125 Av~~i~~ 131 (335)
.++.+.+
T Consensus 217 lv~~~~~ 223 (450)
T PRK04165 217 LVEKLQA 223 (450)
T ss_pred HHHHHHH
Confidence 7777766
No 312
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=78.34 E-value=45 Score=34.79 Aligned_cols=74 Identities=16% Similarity=0.220 Sum_probs=41.0
Q ss_pred CCHHHHHHHHHHHHHc-----CC-ceEec-----cCChhhHHHHHhCCCCEEEEcCCCCCCHHHHHHHHhcCCcEEEeCC
Q psy17999 46 FSQEEYVMLQQCADQV-----DI-MFTAS-----AMDQVSFDFLLSANVPFIKIGSGDSNNIPLIKYAASKQKPLIISTG 114 (335)
Q Consensus 46 l~~e~~~~L~~~~~~~-----Gi-~f~st-----pfd~~svd~l~~l~v~~~KIaS~d~~n~~LL~~~a~~gkPvilStG 114 (335)
|+.+++.+|.+..++. ++ .|..+ -++++-++.+.++|+..+-|+- +..|...|+.+++.
T Consensus 232 L~~~~L~~Ll~~i~~~f~~~~~~~EiTvE~grPd~it~e~L~~Lk~~Gv~RISIGv-QS~~d~vLk~igR~--------- 301 (488)
T PRK08207 232 LTAEELERLLEEIYENFPDVKNVKEFTVEAGRPDTITEEKLEVLKKYGVDRISINP-QTMNDETLKAIGRH--------- 301 (488)
T ss_pred CCHHHHHHHHHHHHHhccccCCceEEEEEcCCCCCCCHHHHHHHHhcCCCeEEEcC-CcCCHHHHHHhCCC---------
Confidence 4566666666666543 22 22221 2456666666666666666653 33344555555431
Q ss_pred CCCCHHHHHHHHHHHHh
Q psy17999 115 MLPSIEHVDNIYTTVKQ 131 (335)
Q Consensus 115 ~~~tl~Ei~~Av~~i~~ 131 (335)
. |.+++.+|++.++.
T Consensus 302 -h-t~e~v~~ai~~ar~ 316 (488)
T PRK08207 302 -H-TVEDIIEKFHLARE 316 (488)
T ss_pred -C-CHHHHHHHHHHHHh
Confidence 2 67777777776665
No 313
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=78.08 E-value=24 Score=36.29 Aligned_cols=198 Identities=16% Similarity=0.232 Sum_probs=110.7
Q ss_pred CCCCCCCCcc-cHHHHHHhh-cCCHHHHHHHHHHHHHcCCceEec--------cCChhh----HHHHHhCCCCEEEEcC-
Q psy17999 26 PYLSPHAWAN-TYGQHKQHL-EFSQEEYVMLQQCADQVDIMFTAS--------AMDQVS----FDFLLSANVPFIKIGS- 90 (335)
Q Consensus 26 ~~~~~~~~~~-~~~~~~~~~-el~~e~~~~L~~~~~~~Gi~f~st--------pfd~~s----vd~l~~l~v~~~KIaS- 90 (335)
-|.+-.-||. +|..-++++ |=|++-+++|++...+.-+.-+.- .+.-+- |+...+.|+|.|.|=-
T Consensus 41 G~~slE~WGGATFDaciRfLnEDPWeRLr~lk~~~~nT~LQMLlRGQNlvGYrhyaDDvVe~Fv~ka~~nGidvfRiFDA 120 (472)
T COG5016 41 GYWSLEVWGGATFDACIRFLNEDPWERLRELKKAVPNTKLQMLLRGQNLVGYRHYADDVVEKFVEKAAENGIDVFRIFDA 120 (472)
T ss_pred CeeEEEecCCccHHHHHHHhcCCHHHHHHHHHHhCCCcHHHHHHccCccccccCCchHHHHHHHHHHHhcCCcEEEechh
Confidence 3455556775 666555553 345555555555555443332211 111122 2334456788887743
Q ss_pred -CCCCCHHHH-HHHHhcCCcEEE--e--C-CCCCCHHHHHHHHHHHHh-cCCCCceeecccCCCCCCCCcccccCceEEe
Q psy17999 91 -GDSNNIPLI-KYAASKQKPLII--S--T-GMLPSIEHVDNIYTTVKQ-YHSNLSILHCVSAYPTPYPTVKQYHSNLSIL 162 (335)
Q Consensus 91 -~d~~n~~LL-~~~a~~gkPvil--S--t-G~~~tl~Ei~~Av~~i~~-g~~~~~~~~c~~g~~~~~~~~~~~~~~l~ll 162 (335)
-|.+|+..- +++.+.|.-+.. | | ..+ |++-+.+.++-+.. |.. -|+|
T Consensus 121 lND~RNl~~ai~a~kk~G~h~q~~i~YT~sPvH-t~e~yv~~akel~~~g~D-----------------------SIci- 175 (472)
T COG5016 121 LNDVRNLKTAIKAAKKHGAHVQGTISYTTSPVH-TLEYYVELAKELLEMGVD-----------------------SICI- 175 (472)
T ss_pred ccchhHHHHHHHHHHhcCceeEEEEEeccCCcc-cHHHHHHHHHHHHHcCCC-----------------------EEEe-
Confidence 356666553 444445654332 2 2 245 77777777766665 533 1111
Q ss_pred eecCCCCCCccCCCchHHHHHHHHCCCCCeecCCCCC-C--hHHHHHHHHcCCcEEEeccCCC-------------CCCC
Q psy17999 163 HCVSAYPTPYHDINLNVIHTLRSRYPDIPIGYSGHEN-G--VHVCYAAVAMGAQIIEKHFTLD-------------KSWK 226 (335)
Q Consensus 163 HC~s~YP~~~~~~nL~~i~~L~~~fp~~pVG~SdHt~-g--~~~~~aAvalGA~vIEkH~tld-------------~~~~ 226 (335)
-=-|.--+|..-..| +..+|+.+ ++||-.-.|.. | ..+-++|+-.||++|..-+.+= .++.
T Consensus 176 KDmaGlltP~~ayel--Vk~iK~~~-~~pv~lHtH~TsG~a~m~ylkAvEAGvD~iDTAisp~S~gtsqP~tEtmv~aL~ 252 (472)
T COG5016 176 KDMAGLLTPYEAYEL--VKAIKKEL-PVPVELHTHATSGMAEMTYLKAVEAGVDGIDTAISPLSGGTSQPATETMVAALR 252 (472)
T ss_pred ecccccCChHHHHHH--HHHHHHhc-CCeeEEecccccchHHHHHHHHHHhCcchhhhhhccccCCCCCCcHHHHHHHhc
Confidence 111222334433333 78899999 69998888865 5 3445789999999988644321 2345
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHH
Q psy17999 227 GSDHASSLTPPELKALVTGIRDIEQ 251 (335)
Q Consensus 227 G~Dh~~Sl~p~el~~lv~~ir~~~~ 251 (335)
|.++-.-++.+.+....+-.+.+.+
T Consensus 253 gt~yDtgld~~~l~~~~~yf~~vrk 277 (472)
T COG5016 253 GTGYDTGLDLELLEEIAEYFREVRK 277 (472)
T ss_pred CCCCCccccHHHHHHHHHHHHHHHH
Confidence 5566667777777776665555553
No 314
>PRK10014 DNA-binding transcriptional repressor MalI; Provisional
Probab=77.82 E-value=42 Score=31.79 Aligned_cols=86 Identities=16% Similarity=0.148 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHcCCceEec--cCChhh----HHHHHhCCCCEEEEcCCCCCCHHHHHHHHhcCCcEEEeCC------CC
Q psy17999 49 EEYVMLQQCADQVDIMFTAS--AMDQVS----FDFLLSANVPFIKIGSGDSNNIPLIKYAASKQKPLIISTG------ML 116 (335)
Q Consensus 49 e~~~~L~~~~~~~Gi~f~st--pfd~~s----vd~l~~l~v~~~KIaS~d~~n~~LL~~~a~~gkPvilStG------~~ 116 (335)
+-...+.++|++.|...+.. ..+.+. ++.+.+.++|.+-+.+.+....++++.+.+.+.|+++--. ..
T Consensus 81 ~i~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~l~~~~iPvV~~~~~~~~~~~~ 160 (342)
T PRK10014 81 ELTAGLTEALEAQGRMVFLLQGGKDGEQLAQRFSTLLNQGVDGVVIAGAAGSSDDLREMAEEKGIPVVFASRASYLDDVD 160 (342)
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCCCCCcHHHHHHHhhcCCCEEEEecCCCCCCCC
Confidence 34455778899999775543 334322 3445566899988877665567899999999999886311 00
Q ss_pred -C---CHHHHHHHHHHHHh-cCC
Q psy17999 117 -P---SIEHVDNIYTTVKQ-YHS 134 (335)
Q Consensus 117 -~---tl~Ei~~Av~~i~~-g~~ 134 (335)
. ...-...|++++.+ |+.
T Consensus 161 ~V~~D~~~~~~~a~~~L~~~G~~ 183 (342)
T PRK10014 161 TVRPDNMQAAQLLTEHLIRNGHQ 183 (342)
T ss_pred EEEeCCHHHHHHHHHHHHHCCCC
Confidence 0 23345667777766 544
No 315
>cd01311 PDC_hydrolase 2-pyrone-4,6-dicarboxylic acid (PDC) hydrolase hydrolyzes PDC to yield 4-oxalomesaconic acid (OMA) or its tautomer, 4-carboxy-2-hydroxymuconic acid (CHM). This reaction is part of the protocatechuate (PCA) 4,5-cleavage pathway. PCA is one of the most important intermediate metabolites in the bacterial pathways for various phenolic compounds, including lignin, which is the most abundant aromatic material in nature.
Probab=77.65 E-value=36 Score=31.82 Aligned_cols=145 Identities=13% Similarity=0.020 Sum_probs=78.4
Q ss_pred hhHHHHHhCCCCEEEEcCCC--CCC----HHHHHHHHhcCCcEEEeCCCCCCHHHHHHHHHHHHhcCCCCceeecccCCC
Q psy17999 73 VSFDFLLSANVPFIKIGSGD--SNN----IPLIKYAASKQKPLIISTGMLPSIEHVDNIYTTVKQYHSNLSILHCVSAYP 146 (335)
Q Consensus 73 ~svd~l~~l~v~~~KIaS~d--~~n----~~LL~~~a~~gkPvilStG~~~tl~Ei~~Av~~i~~g~~~~~~~~c~~g~~ 146 (335)
+.++.+.+.|+-.+|+.-.. ..+ .++++.++..|.||.+-+|.. .+.++...++.+ .-
T Consensus 84 ~~l~~~~~~g~rGvRl~~~~~~~~~~~~~~~~~~~~~~~gl~v~~~~~~~-~l~~l~~l~~~~---~l------------ 147 (263)
T cd01311 84 AELKEMHDAGVRGVRFNFLFGGVDNKDELDEIAKRAAELGWHVQVYFDAV-DLPALLPFLQKL---PV------------ 147 (263)
T ss_pred HHHHHHHHCCCeEEEEecccCCCCCHHHHHHHHHHHHHcCCEEEEEeCHh-hHHHHHHHHHHC---CC------------
Confidence 34555566788889874221 112 467888999999999999987 777666554433 12
Q ss_pred CCCCCcccccCceEEeeecCCCCCCc-cCCCchHHHHHHHHCCCCCeecCC------CCCCh----HHHHHHHHcCCcEE
Q psy17999 147 TPYPTVKQYHSNLSILHCVSAYPTPY-HDINLNVIHTLRSRYPDIPIGYSG------HENGV----HVCYAAVAMGAQII 215 (335)
Q Consensus 147 ~~~~~~~~~~~~l~llHC~s~YP~~~-~~~nL~~i~~L~~~fp~~pVG~Sd------Ht~g~----~~~~aAvalGA~vI 215 (335)
+++|-||-...+... ....+..+-.+. ++||+-+=.|. +.... ......++.|+
T Consensus 148 -----------~ivldH~G~p~~~~~~~~~~~~~~l~~l-~~pNV~~k~Sg~~~~~~~~~~~~~~~~~~~~~~~~g~--- 212 (263)
T cd01311 148 -----------AVVIDHFGRPDVTKGVDGAEFAALLKLI-EEGNVWVKVSGPYRLSVKQEAYADVIAFARQIVAAAP--- 212 (263)
T ss_pred -----------CEEEECCCCCCCCCCCCCHhHHHHHHHH-hcCCEEEEecchhhcCCCCCCHHHHHHHHHHHHHhCC---
Confidence 789999854322221 222344433333 57876553332 22111 11122223344
Q ss_pred EeccCCCCCCCCCCCCCCCCH--HHHHHHHHHHHHHHHHhC
Q psy17999 216 EKHFTLDKSWKGSDHASSLTP--PELKALVTGIRDIEQSLG 254 (335)
Q Consensus 216 EkH~tld~~~~G~Dh~~Sl~p--~el~~lv~~ir~~~~alG 254 (335)
||=|-|.|....... ..+..+...+..+..+++
T Consensus 213 ------dRlmfGSD~P~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (263)
T cd01311 213 ------DRLVWGTDWPHPRLREPDPMPDDGALLRLIPSWAP 247 (263)
T ss_pred ------CcEEEeCCCCCCCccccCCCCCHHHHHHHHHHHcC
Confidence 566677777665333 233344444444444444
No 316
>cd06303 PBP1_LuxPQ_Quorum_Sensing Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs. Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs from other bacteria. The members of this group are highly homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea, and that are members of the type I periplasmic binding protein superfamily. The Vibrio harveyi AI-2 receptor consists of two polypeptides, LuxP and LuxQ: LuxP is a periplasmic binding protein that binds AI-2 by clamping it between two domains, LuxQ is an integral membrane protein belonging to the two-component sensor kinase family. Unlike AI-2 bound to the LsrB receptor in Salmonella typhimurium, the Vibrio harveyi AI-2 signaling molecule has an unusual furanosyl borate
Probab=77.63 E-value=34 Score=31.54 Aligned_cols=64 Identities=11% Similarity=0.184 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHcCCceEeccCC------h-h---hHHHHHhCCCCEEEEcCCCCCCHHHHHHHHhcCCcEEEe
Q psy17999 49 EEYVMLQQCADQVDIMFTASAMD------Q-V---SFDFLLSANVPFIKIGSGDSNNIPLIKYAASKQKPLIIS 112 (335)
Q Consensus 49 e~~~~L~~~~~~~Gi~f~stpfd------~-~---svd~l~~l~v~~~KIaS~d~~n~~LL~~~a~~gkPvilS 112 (335)
..+..+.+.+++.|+.++..+++ . . .++.+.+.++|.+-+.+....+.+.++++.+.++|+++-
T Consensus 17 ~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vDgiIv~~~~~~~~~~~~~l~~~~~p~V~i 90 (280)
T cd06303 17 RNIASFTARLEELNIPYELTQFSSRPGIDHRLQSQQLNEALQSKPDYLIFTLDSLRHRKLIERVLASGKTKIIL 90 (280)
T ss_pred HHHHHHHHHHHHcCCcEEEEEeccCcccCHHHHHHHHHHHHHcCCCEEEEcCCchhhHHHHHHHHhCCCCeEEE
Confidence 45678889999999888775432 1 1 233455668999988765544568888888888775444
No 317
>PLN02461 Probable pyruvate kinase
Probab=77.63 E-value=20 Score=37.74 Aligned_cols=86 Identities=16% Similarity=0.224 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHcC--CceEeccCChhhHHHHHhC--CCCEEEEcCCCCCC------H-----HHHHHHHhcCCcEEEeC
Q psy17999 49 EEYVMLQQCADQVD--IMFTASAMDQVSFDFLLSA--NVPFIKIGSGDSNN------I-----PLIKYAASKQKPLIIST 113 (335)
Q Consensus 49 e~~~~L~~~~~~~G--i~f~stpfd~~svd~l~~l--~v~~~KIaS~d~~n------~-----~LL~~~a~~gkPvilSt 113 (335)
++..+++++..+.| +.+++=.-..++++-+.+. -.|.+-||=+||.- . .+++.+-+.|||||+.|
T Consensus 220 ~DV~~~r~~l~~~~~~~~IiAKIE~~~av~nl~eIi~~sDgIMVARGDLGvEip~e~vp~~Qk~II~~c~~~gkPVIvAT 299 (511)
T PLN02461 220 SDLVEVRKVLGEHAKSILLISKVENQEGLDNFDDILAESDAFMVARGDLGMEIPIEKIFLAQKMMIYKCNLAGKPVVTAT 299 (511)
T ss_pred HHHHHHHHHHHhCCCCCCEEEEECCHHHHHHHHHHHHhcCEEEEeccccccccCHHHhHHHHHHHHHHHHHcCCCeEEee
Confidence 44555555554432 4455555455554433331 16777778887653 2 44555667899999988
Q ss_pred CC--------CCCHHHHHHHHHHHHhcCC
Q psy17999 114 GM--------LPSIEHVDNIYTTVKQYHS 134 (335)
Q Consensus 114 G~--------~~tl~Ei~~Av~~i~~g~~ 134 (335)
=| .||-+|+-..++.+..|..
T Consensus 300 QmLeSMi~np~PTRAEvsDVanAV~dG~D 328 (511)
T PLN02461 300 QMLESMIKSPRPTRAEATDVANAVLDGTD 328 (511)
T ss_pred hhHHHHhhCCCCchHHHHHHHHHHHhCCc
Confidence 64 3799999999999887654
No 318
>PTZ00066 pyruvate kinase; Provisional
Probab=77.47 E-value=19 Score=37.91 Aligned_cols=88 Identities=16% Similarity=0.150 Sum_probs=61.2
Q ss_pred CHHHHHHHHHHHHHcC--CceEeccCChhhHHHHHhC--CCCEEEEcCCCCCC------H-----HHHHHHHhcCCcEEE
Q psy17999 47 SQEEYVMLQQCADQVD--IMFTASAMDQVSFDFLLSA--NVPFIKIGSGDSNN------I-----PLIKYAASKQKPLII 111 (335)
Q Consensus 47 ~~e~~~~L~~~~~~~G--i~f~stpfd~~svd~l~~l--~v~~~KIaS~d~~n------~-----~LL~~~a~~gkPvil 111 (335)
+.++..+++++.++.| +.+++=.-..++++-+.+. -.|.+-||=+||.- . .+++.+-+.|||||+
T Consensus 234 ~a~DI~~~r~~l~~~g~~~~IiAKIE~~~av~NldeIl~~sDGIMVARGDLGvEip~e~vp~~QK~II~~c~~~gkPVIv 313 (513)
T PTZ00066 234 SADDVRLCRQLLGERGRHIKIIPKIENIEGLINFDEILAESDGIMVARGDLGMEIPPEKVFLAQKMMISKCNVAGKPVIT 313 (513)
T ss_pred CHHHHHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHHHhcCEEEEEccccccccChHHcchHHHHHHHHHHHhCCCEEE
Confidence 4466666777766654 5666666666665544431 27888888888764 3 345556678999999
Q ss_pred eCCC--------CCCHHHHHHHHHHHHhcCC
Q psy17999 112 STGM--------LPSIEHVDNIYTTVKQYHS 134 (335)
Q Consensus 112 StG~--------~~tl~Ei~~Av~~i~~g~~ 134 (335)
.|=| .||-+|+-..++.+..|..
T Consensus 314 ATQmLeSMi~np~PTRAEvsDVaNAV~DG~D 344 (513)
T PTZ00066 314 ATQMLESMIKNPRPTRAESTDVANAVLDGTD 344 (513)
T ss_pred echhHHHHhhCCCCchHHHHHHHHHHHhCCc
Confidence 8864 4789999999999887654
No 319
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=77.45 E-value=24 Score=33.44 Aligned_cols=81 Identities=15% Similarity=0.198 Sum_probs=53.6
Q ss_pred CCHHHHHHHHHHHHHcCCce--EeccCC-hhhHHHHHhCCCCEEEE-cC----CC--CCCHHHHHHHH---h-cCCcEEE
Q psy17999 46 FSQEEYVMLQQCADQVDIMF--TASAMD-QVSFDFLLSANVPFIKI-GS----GD--SNNIPLIKYAA---S-KQKPLII 111 (335)
Q Consensus 46 l~~e~~~~L~~~~~~~Gi~f--~stpfd-~~svd~l~~l~v~~~KI-aS----~d--~~n~~LL~~~a---~-~gkPvil 111 (335)
++.++..++.+.|+++|+.. +++|-+ .+.+..+.+..-.++=+ ++ +. -.+.++++.+. + +++||++
T Consensus 124 lp~ee~~~~~~~~~~~gl~~i~lv~P~T~~eri~~i~~~~~gfiy~vs~~G~TG~~~~~~~~~~~~i~~lr~~~~~pi~v 203 (256)
T TIGR00262 124 LPLEESGDLVEAAKKHGVKPIFLVAPNADDERLKQIAEKSQGFVYLVSRAGVTGARNRAASALNELVKRLKAYSAKPVLV 203 (256)
T ss_pred CChHHHHHHHHHHHHCCCcEEEEECCCCCHHHHHHHHHhCCCCEEEEECCCCCCCcccCChhHHHHHHHHHhhcCCCEEE
Confidence 67899999999999999874 466655 44555555552224433 32 11 12334444444 3 4789999
Q ss_pred eCCCCCCHHHHHHHHH
Q psy17999 112 STGMLPSIEHVDNIYT 127 (335)
Q Consensus 112 StG~~~tl~Ei~~Av~ 127 (335)
--|-+ |.+++..+.+
T Consensus 204 gfGI~-~~e~~~~~~~ 218 (256)
T TIGR00262 204 GFGIS-KPEQVKQAID 218 (256)
T ss_pred eCCCC-CHHHHHHHHH
Confidence 99999 9999998755
No 320
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=77.41 E-value=11 Score=37.41 Aligned_cols=74 Identities=4% Similarity=0.085 Sum_probs=55.6
Q ss_pred HHHHHHHHHHcCCceEeccCChhhH-HHHHhCCCCEEEEcCC--CCCCHHHHHHHHhcCCcEEEeCCCCCCHHHHHHHHH
Q psy17999 51 YVMLQQCADQVDIMFTASAMDQVSF-DFLLSANVPFIKIGSG--DSNNIPLIKYAASKQKPLIISTGMLPSIEHVDNIYT 127 (335)
Q Consensus 51 ~~~L~~~~~~~Gi~f~stpfd~~sv-d~l~~l~v~~~KIaS~--d~~n~~LL~~~a~~gkPvilStG~~~tl~Ei~~Av~ 127 (335)
-....+.++++|+.+. .++ +++.+.+++++=|++. .-.+.++..++.+.||.|++...++ .+|.++.++
T Consensus 38 ~erA~~~A~~~gi~~y------~~~eell~d~Di~~V~ipt~~P~~~H~e~a~~aL~aGkHVL~EKPla--~~Ea~el~~ 109 (343)
T TIGR01761 38 SERSRALAHRLGVPLY------CEVEELPDDIDIACVVVRSAIVGGQGSALARALLARGIHVLQEHPLH--PRDIQDLLR 109 (343)
T ss_pred HHHHHHHHHHhCCCcc------CCHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHhCCCeEEEcCCCC--HHHHHHHHH
Confidence 3456778889998732 233 3444566777777664 5688999999999999999999998 588888887
Q ss_pred HHHhc
Q psy17999 128 TVKQY 132 (335)
Q Consensus 128 ~i~~g 132 (335)
..++.
T Consensus 110 ~A~~~ 114 (343)
T TIGR01761 110 LAERQ 114 (343)
T ss_pred HHHHc
Confidence 77653
No 321
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=77.35 E-value=25 Score=34.59 Aligned_cols=77 Identities=16% Similarity=0.199 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHcCCceEec----cCChhhHHHHHhCCCCEEEEcCCCCCC--------------------H--H---HHH
Q psy17999 50 EYVMLQQCADQVDIMFTAS----AMDQVSFDFLLSANVPFIKIGSGDSNN--------------------I--P---LIK 100 (335)
Q Consensus 50 ~~~~L~~~~~~~Gi~f~st----pfd~~svd~l~~l~v~~~KIaS~d~~n--------------------~--~---LL~ 100 (335)
++..|.+..+..+++++.= .++.+.+..|.+.|+|++-|+.+-=+| | + .|.
T Consensus 167 ~le~i~~i~~~~~vPVivK~~g~g~~~~~a~~L~~aGvd~I~Vsg~gGt~~~~ie~~r~~~~~~~~~~~~~g~~t~~~l~ 246 (333)
T TIGR02151 167 WLEKIAEICSQLSVPVIVKEVGFGISKEVAKLLADAGVSAIDVAGAGGTSWAQVENYRAKGSNLASFFNDWGIPTAASLL 246 (333)
T ss_pred HHHHHHHHHHhcCCCEEEEecCCCCCHHHHHHHHHcCCCEEEECCCCCCcccchhhhcccccccchhhhcccHhHHHHHH
Confidence 4567777888878888752 267788889999999999997753221 1 2 333
Q ss_pred HHHh--cCCcEEEeCCCCCCHHHHHHHHH
Q psy17999 101 YAAS--KQKPLIISTGMLPSIEHVDNIYT 127 (335)
Q Consensus 101 ~~a~--~gkPvilStG~~~tl~Ei~~Av~ 127 (335)
++.+ .+.|||.+-|.. +..++.+++.
T Consensus 247 ~~~~~~~~ipVIasGGI~-~~~di~kaLa 274 (333)
T TIGR02151 247 EVRSDAPDAPIIASGGLR-TGLDVAKAIA 274 (333)
T ss_pred HHHhcCCCCeEEEECCCC-CHHHHHHHHH
Confidence 3333 479999999999 9999998876
No 322
>PTZ00300 pyruvate kinase; Provisional
Probab=77.30 E-value=12 Score=38.75 Aligned_cols=88 Identities=20% Similarity=0.189 Sum_probs=64.7
Q ss_pred CHHHHHHHHHHHHHcC--CceEeccCChhhHHHHHh--CCCCEEEEcCCCCCC-----------HHHHHHHHhcCCcEEE
Q psy17999 47 SQEEYVMLQQCADQVD--IMFTASAMDQVSFDFLLS--ANVPFIKIGSGDSNN-----------IPLIKYAASKQKPLII 111 (335)
Q Consensus 47 ~~e~~~~L~~~~~~~G--i~f~stpfd~~svd~l~~--l~v~~~KIaS~d~~n-----------~~LL~~~a~~gkPvil 111 (335)
+.++..++++++.+.| +.+++-.-+.++++-+.+ -++|.+-||-+||.- -.+++.+.+.|||+|+
T Consensus 171 saeDv~~vr~~l~~~~~~~~IiaKIEt~eav~nldeI~~~~DgImVaRGDLgvei~~e~vp~~Qk~Ii~~~~~~gkpvI~ 250 (454)
T PTZ00300 171 SAEQVGEVRKALGAKGGDIMIICKIENHQGVQNIDSIIEESDGIMVARGDLGVEIPAEKVVVAQKILISKCNVAGKPVIC 250 (454)
T ss_pred CHHHHHHHHHHHHhcCCCceEEEEECCHHHHHhHHHHHHhCCEEEEecchhhhhcChHHHHHHHHHHHHHHHHcCCCEEE
Confidence 5677778888886554 567777777777766555 248999999998753 2344555667999999
Q ss_pred eCCC--------CCCHHHHHHHHHHHHhcCC
Q psy17999 112 STGM--------LPSIEHVDNIYTTVKQYHS 134 (335)
Q Consensus 112 StG~--------~~tl~Ei~~Av~~i~~g~~ 134 (335)
.|=| .||-+|+-..++.+..|..
T Consensus 251 ATQmLeSM~~~p~PTRAEvsDVanAv~dG~D 281 (454)
T PTZ00300 251 ATQMLESMTYNPRPTRAEVSDVANAVFNGAD 281 (454)
T ss_pred ECchHHHHhhCCCCCchhHHHHHHHHHhCCc
Confidence 8875 3688999999999887654
No 323
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=77.30 E-value=44 Score=30.04 Aligned_cols=85 Identities=14% Similarity=0.019 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHcCCceEe--ccCChh----hHHHHHhCCCCEEEEcCCCCCCHHHHHHHHhcCCcEEEe-CCCC-----
Q psy17999 49 EEYVMLQQCADQVDIMFTA--SAMDQV----SFDFLLSANVPFIKIGSGDSNNIPLIKYAASKQKPLIIS-TGML----- 116 (335)
Q Consensus 49 e~~~~L~~~~~~~Gi~f~s--tpfd~~----svd~l~~l~v~~~KIaS~d~~n~~LL~~~a~~gkPvilS-tG~~----- 116 (335)
+-+..+.+.+++.|..++. +..|++ .++.+.+-++|.+-+.+.. .+.++++.+.+.+.|+++- +...
T Consensus 16 ~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~-~~~~~~~~l~~~~iPvv~~~~~~~~~~~~ 94 (268)
T cd06273 16 RVIQAFQETLAAHGYTLLVASSGYDLDREYAQARKLLERGVDGLALIGLD-HSPALLDLLARRGVPYVATWNYSPDSPYP 94 (268)
T ss_pred HHHHHHHHHHHHCCCEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEeCCC-CCHHHHHHHHhCCCCEEEEcCCCCCCCCC
Confidence 4456778899999988665 334443 2345556679988776554 3568888888889998863 2211
Q ss_pred -C---CHHHHHHHHHHHHh-cCC
Q psy17999 117 -P---SIEHVDNIYTTVKQ-YHS 134 (335)
Q Consensus 117 -~---tl~Ei~~Av~~i~~-g~~ 134 (335)
. ..+....+++++.+ |..
T Consensus 95 ~v~~d~~~~~~~~~~~l~~~g~~ 117 (268)
T cd06273 95 CVGFDNREAGRLAARHLIALGHR 117 (268)
T ss_pred EEEeChHHHHHHHHHHHHHCCCC
Confidence 0 13555667777776 444
No 324
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=77.29 E-value=26 Score=34.32 Aligned_cols=99 Identities=23% Similarity=0.239 Sum_probs=62.1
Q ss_pred cCCCCCCHHHHHHHHh-----c--CCcEEEeC--CCCCCHHHHHHHHHHHHhcCCCCceeecccCCCCCCCCcccccCce
Q psy17999 89 GSGDSNNIPLIKYAAS-----K--QKPLIIST--GMLPSIEHVDNIYTTVKQYHSNLSILHCVSAYPTPYPTVKQYHSNL 159 (335)
Q Consensus 89 aS~d~~n~~LL~~~a~-----~--gkPvilSt--G~~~tl~Ei~~Av~~i~~g~~~~~~~~c~~g~~~~~~~~~~~~~~l 159 (335)
||+-+++.+++.++-+ . ++||.+++ |.. +.++..+.++.+.+.+. +.
T Consensus 109 Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR~g~~-~~~~~~~~a~~l~~~Gv-----------------------d~ 164 (312)
T PRK10550 109 GATLLKDPELIYQGAKAMREAVPAHLPVTVKVRLGWD-SGERKFEIADAVQQAGA-----------------------TE 164 (312)
T ss_pred chHhhcCHHHHHHHHHHHHHhcCCCcceEEEEECCCC-CchHHHHHHHHHHhcCC-----------------------CE
Confidence 4456789998887643 2 48999995 444 55666666666665223 56
Q ss_pred EEeeecCCCCCCc--cCCCchHHHHHHHHCCCCCeecCCCCCChHHHHHHHH-cCCc
Q psy17999 160 SILHCVSAYPTPY--HDINLNVIHTLRSRYPDIPIGYSGHENGVHVCYAAVA-MGAQ 213 (335)
Q Consensus 160 ~llHC~s~YP~~~--~~~nL~~i~~L~~~fp~~pVG~SdHt~g~~~~~aAva-lGA~ 213 (335)
..+|+-+.-. .+ ..+|+..|..+++.. ++||...+--....-+...+. -||+
T Consensus 165 i~Vh~Rt~~~-~y~g~~~~~~~i~~ik~~~-~iPVi~nGdI~t~~da~~~l~~~g~D 219 (312)
T PRK10550 165 LVVHGRTKED-GYRAEHINWQAIGEIRQRL-TIPVIANGEIWDWQSAQQCMAITGCD 219 (312)
T ss_pred EEECCCCCcc-CCCCCcccHHHHHHHHhhc-CCcEEEeCCcCCHHHHHHHHhccCCC
Confidence 6778655322 12 125899999999988 899966654444444444443 3454
No 325
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=77.24 E-value=44 Score=32.67 Aligned_cols=128 Identities=13% Similarity=0.019 Sum_probs=73.2
Q ss_pred HHHHHHcC-CceEeccCChhhHHHHHhCCCCEEEEcCCCCCCHHHHHHH-----HhcCCcEEEeCCCCCCHHHHHHHHHH
Q psy17999 55 QQCADQVD-IMFTASAMDQVSFDFLLSANVPFIKIGSGDSNNIPLIKYA-----ASKQKPLIISTGMLPSIEHVDNIYTT 128 (335)
Q Consensus 55 ~~~~~~~G-i~f~stpfd~~svd~l~~l~v~~~KIaS~d~~n~~LL~~~-----a~~gkPvilStG~~~tl~Ei~~Av~~ 128 (335)
+..|++.| ..+..|+|=.. .- +...+.. ...+.+.. ...+.|++++-+++ +.+++.+|+..
T Consensus 17 R~l~~~~g~~~~~~temvs~--~~--------~~~~~~~--~~~~~~~~~~~~~~~~e~p~~vQl~g~-~p~~~~~aA~~ 83 (312)
T PRK10550 17 RELLTEVNDYDLCITEFLRV--VD--------QLLPVKV--FHRLCPELHNASRTPSGTLVRIQLLGQ-YPQWLAENAAR 83 (312)
T ss_pred HHHHHHhCCCCEEEeCCEEe--ch--------hcccchh--HHHHhHHhcccCCCCCCCcEEEEeccC-CHHHHHHHHHH
Confidence 45677778 78888887421 10 0011111 11222222 23468999999999 99999999988
Q ss_pred HHh-cCCCCceeecccCCCCCCCCcccccCceEEee--ecC----CCCC---CccCCC--chHHHHHHHHCC-CCCee--
Q psy17999 129 VKQ-YHSNLSILHCVSAYPTPYPTVKQYHSNLSILH--CVS----AYPT---PYHDIN--LNVIHTLRSRYP-DIPIG-- 193 (335)
Q Consensus 129 i~~-g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llH--C~s----~YP~---~~~~~n--L~~i~~L~~~fp-~~pVG-- 193 (335)
+.+ |. +.+=|| |.+ .|-. -.++.+ ...+..+++..| ++||.
T Consensus 84 ~~~~g~------------------------d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvK 139 (312)
T PRK10550 84 AVELGS------------------------WGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVK 139 (312)
T ss_pred HHHcCC------------------------CEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhcCCCcceEEE
Confidence 876 42 344445 422 1211 012222 334556677774 46764
Q ss_pred ----cCCCCCChHHHHHHHHcCCcEEEecc
Q psy17999 194 ----YSGHENGVHVCYAAVAMGAQIIEKHF 219 (335)
Q Consensus 194 ----~SdHt~g~~~~~aAvalGA~vIEkH~ 219 (335)
+.+.......+.++...|++.|--|-
T Consensus 140 iR~g~~~~~~~~~~a~~l~~~Gvd~i~Vh~ 169 (312)
T PRK10550 140 VRLGWDSGERKFEIADAVQQAGATELVVHG 169 (312)
T ss_pred EECCCCCchHHHHHHHHHHhcCCCEEEECC
Confidence 33222235566777889999998884
No 326
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=77.23 E-value=46 Score=29.80 Aligned_cols=62 Identities=6% Similarity=-0.007 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHcCCceEeccCC--h----hhHHHHHhCCCCEEEEcCCCCCCHHHHHHHHhcCCcEEE
Q psy17999 49 EEYVMLQQCADQVDIMFTASAMD--Q----VSFDFLLSANVPFIKIGSGDSNNIPLIKYAASKQKPLII 111 (335)
Q Consensus 49 e~~~~L~~~~~~~Gi~f~stpfd--~----~svd~l~~l~v~~~KIaS~d~~n~~LL~~~a~~gkPvil 111 (335)
+-...+.+.+++.|..++....+ . +.++.+.+.++|.+-+.+.+.+ .+.++.+.+.+.||++
T Consensus 16 ~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~-~~~~~~~~~~~ipvv~ 83 (268)
T cd01575 16 DVLQGISDVLEAAGYQLLLGNTGYSPEREEELLRTLLSRRPAGLILTGLEHT-ERTRQLLRAAGIPVVE 83 (268)
T ss_pred HHHHHHHHHHHHcCCEEEEecCCCCchhHHHHHHHHHHcCCCEEEEeCCCCC-HHHHHHHHhcCCCEEE
Confidence 33456788899999987765543 2 2345566678999988876644 5677777788999986
No 327
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=77.20 E-value=20 Score=33.64 Aligned_cols=79 Identities=9% Similarity=-0.064 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHcCCceEeccCChhhHHHHHhCCCCEEEE--c-------CCCCCCHHHHHHHHhcCCcEEEeCCCCCCH
Q psy17999 49 EEYVMLQQCADQVDIMFTASAMDQVSFDFLLSANVPFIKI--G-------SGDSNNIPLIKYAASKQKPLIISTGMLPSI 119 (335)
Q Consensus 49 e~~~~L~~~~~~~Gi~f~stpfd~~svd~l~~l~v~~~KI--a-------S~d~~n~~LL~~~a~~gkPvilStG~~~tl 119 (335)
..+.+|.++.+..|..+|+..-+.+..-.+.++|+|++=- . ...=.++.|++++.+.|.+||-.-.-. |+
T Consensus 114 ~~~~~~i~~~k~~~~l~MAD~St~ee~l~a~~~G~D~IGTTLsGYT~~~~~~~~pDf~lvk~l~~~~~~vIAEGr~~-tP 192 (229)
T COG3010 114 GDLEELIARIKYPGQLAMADCSTFEEGLNAHKLGFDIIGTTLSGYTGYTEKPTEPDFQLVKQLSDAGCRVIAEGRYN-TP 192 (229)
T ss_pred chHHHHHHHhhcCCcEEEeccCCHHHHHHHHHcCCcEEecccccccCCCCCCCCCcHHHHHHHHhCCCeEEeeCCCC-CH
Confidence 3788888889999999999999999999999999998721 1 123457899999999999999998899 99
Q ss_pred HHHHHHHHH
Q psy17999 120 EHVDNIYTT 128 (335)
Q Consensus 120 ~Ei~~Av~~ 128 (335)
+.-.+|++.
T Consensus 193 ~~Ak~a~~~ 201 (229)
T COG3010 193 EQAKKAIEI 201 (229)
T ss_pred HHHHHHHHh
Confidence 998888764
No 328
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=77.17 E-value=69 Score=30.54 Aligned_cols=110 Identities=18% Similarity=0.140 Sum_probs=58.8
Q ss_pred CCCCcEEEeecccccccccccccCCCCCCCCCCcc-cHHHHHHhh--cCCH-HHHHHHHHHH-HHcCCce--Ee--ccCC
Q psy17999 1 ECGADCVKFQKSCLSTKFTQSALDRPYLSPHAWAN-TYGQHKQHL--EFSQ-EEYVMLQQCA-DQVDIMF--TA--SAMD 71 (335)
Q Consensus 1 ~aGaDaVKFQ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--el~~-e~~~~L~~~~-~~~Gi~f--~s--tpfd 71 (335)
+.|||++-.+. ||..|...|. .+....+.+ .++. +-+..+++.. +...+++ ++ .|+.
T Consensus 37 ~~Gad~iElGi--------------PfSDP~aDGpvIq~a~~~AL~~G~~~~~~~~~~~~~r~~~~~~p~vlm~Y~N~i~ 102 (258)
T PRK13111 37 EAGADIIELGI--------------PFSDPVADGPVIQAASLRALAAGVTLADVFELVREIREKDPTIPIVLMTYYNPIF 102 (258)
T ss_pred HCCCCEEEECC--------------CCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEecccHHh
Confidence 36888888887 3444433332 122222222 2454 3455555555 3345553 32 2222
Q ss_pred h----hhHHHHHhCCCCEEEEcCCCCCCH---HHHHHHHhcCCcEEE-eCCCCCCHHHHHHHHH
Q psy17999 72 Q----VSFDFLLSANVPFIKIGSGDSNNI---PLIKYAASKQKPLII-STGMLPSIEHVDNIYT 127 (335)
Q Consensus 72 ~----~svd~l~~l~v~~~KIaS~d~~n~---~LL~~~a~~gkPvil-StG~~~tl~Ei~~Av~ 127 (335)
. +-++.+.+.|++.+-|+ |+-.- ++++++.+.|...|. -+.-+ +.+.+....+
T Consensus 103 ~~G~e~f~~~~~~aGvdGviip--DLp~ee~~~~~~~~~~~gl~~I~lvap~t-~~eri~~i~~ 163 (258)
T PRK13111 103 QYGVERFAADAAEAGVDGLIIP--DLPPEEAEELRAAAKKHGLDLIFLVAPTT-TDERLKKIAS 163 (258)
T ss_pred hcCHHHHHHHHHHcCCcEEEEC--CCCHHHHHHHHHHHHHcCCcEEEEeCCCC-CHHHHHHHHH
Confidence 2 22567778999999996 44332 445556667865554 55555 5666666544
No 329
>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=77.12 E-value=1.1 Score=44.89 Aligned_cols=59 Identities=24% Similarity=0.195 Sum_probs=40.3
Q ss_pred EEEEeecCCCCcccccCCcEEeeCC--------CCCCCcchHHHHhcchhhcccCCCCcccCCCCCCCC
Q psy17999 274 CIVSSCDIQAGTVLQEFHVCIKVAE--------PKGICGTRYASVMGRKVNRDIRRDESIQDIDLDPVE 334 (335)
Q Consensus 274 sl~a~~di~~G~~l~~~dl~~kr~~--------~~Gi~p~~~~~viG~~~~~di~~~~~i~~~~l~~~~ 334 (335)
.-+|++|+++||.|.-.-=.+-|.- ..+.-|. -.+-|-+++|+|++|+.||.+|.+..+
T Consensus 349 vAvAKkDl~aGE~LDgiG~y~~~~~~~t~~~a~~~~alPi--GL~~g~~v~rpIkKge~iTyddve~~~ 415 (438)
T COG4091 349 VAVAKKDLAAGETLDGIGGYCVRGWIMTVTEARAQKALPI--GLAEGGKVKRPIKKGELITYDDVELDE 415 (438)
T ss_pred hhhhhhccCCccccccccceEEEEEEecchhHHhcCCcce--eeccCceEecccCCCcEEeccccccCC
Confidence 3478999999999987643333310 0111111 225688999999999999999987654
No 330
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=77.12 E-value=63 Score=30.05 Aligned_cols=126 Identities=14% Similarity=0.159 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHHcCCceEeccCChhhHHHHHhCCCCEEEEcCCCCCCHHHHHHHHhcCCcEEEeCCCCCCHHHHHHHHH
Q psy17999 48 QEEYVMLQQCADQVDIMFTASAMDQVSFDFLLSANVPFIKIGSGDSNNIPLIKYAASKQKPLIISTGMLPSIEHVDNIYT 127 (335)
Q Consensus 48 ~e~~~~L~~~~~~~Gi~f~stpfd~~svd~l~~l~v~~~KIaS~d~~n~~LL~~~a~~gkPvilStG~~~tl~Ei~~Av~ 127 (335)
.+.-++|.+.|+++|+.|+.- ..++.+.+.+.|.+-++..|+..-...+-+ +.-+||....+ +++|...|.+
T Consensus 51 ~~~a~~~~~lc~~~~v~liIN----d~~dlA~~~~AdGVHlGq~D~~~~~ar~~~---~~~~iIG~S~h-~~eea~~A~~ 122 (211)
T COG0352 51 LALAEKLRALCQKYGVPLIIN----DRVDLALAVGADGVHLGQDDMPLAEARELL---GPGLIIGLSTH-DLEEALEAEE 122 (211)
T ss_pred HHHHHHHHHHHHHhCCeEEec----CcHHHHHhCCCCEEEcCCcccchHHHHHhc---CCCCEEEeecC-CHHHHHHHHh
Confidence 355688999999999999974 356778889999999999987655544443 44567766666 9999998865
Q ss_pred HHHhcCCCCceeecccCCCCCCCCcccccCceEEeeecCCCCCCc----cCCCchHHHHHHHHCCCCCe-ecCCCCCChH
Q psy17999 128 TVKQYHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYPTPY----HDINLNVIHTLRSRYPDIPI-GYSGHENGVH 202 (335)
Q Consensus 128 ~i~~g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~s~YP~~~----~~~nL~~i~~L~~~fp~~pV-G~SdHt~g~~ 202 (335)
. + . .++..- .-|||+- .-.-+..+..+++.. .+|+ .--+ .+..
T Consensus 123 ~---g-~--DYv~~G-----------------------pifpT~tK~~~~~~G~~~l~~~~~~~-~iP~vAIGG--i~~~ 170 (211)
T COG0352 123 L---G-A--DYVGLG-----------------------PIFPTSTKPDAPPLGLEGLREIRELV-NIPVVAIGG--INLE 170 (211)
T ss_pred c---C-C--CEEEEC-----------------------CcCCCCCCCCCCccCHHHHHHHHHhC-CCCEEEEcC--CCHH
Confidence 3 2 1 111111 1245443 345567777777765 5776 2211 2244
Q ss_pred HHHHHHHcCCc
Q psy17999 203 VCYAAVAMGAQ 213 (335)
Q Consensus 203 ~~~aAvalGA~ 213 (335)
-.......||+
T Consensus 171 nv~~v~~~Ga~ 181 (211)
T COG0352 171 NVPEVLEAGAD 181 (211)
T ss_pred HHHHHHHhCCC
Confidence 45556677776
No 331
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=77.11 E-value=61 Score=30.90 Aligned_cols=37 Identities=30% Similarity=0.357 Sum_probs=27.5
Q ss_pred HHHHHHHHcCCcEEEeccCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q psy17999 202 HVCYAAVAMGAQIIEKHFTLDKSWKGSDHASSLTPPELKALVTGIRD 248 (335)
Q Consensus 202 ~~~~aAvalGA~vIEkH~tld~~~~G~Dh~~Sl~p~el~~lv~~ir~ 248 (335)
..+..+..+||+.|- + .|-.-.++|+++.++++.+++
T Consensus 153 ~~~~~~~~~Ga~~i~----l------~DT~G~~~P~~v~~lv~~l~~ 189 (275)
T cd07937 153 KLAKELEDMGADSIC----I------KDMAGLLTPYAAYELVKALKK 189 (275)
T ss_pred HHHHHHHHcCCCEEE----E------cCCCCCCCHHHHHHHHHHHHH
Confidence 345567788888765 2 177778889999999888875
No 332
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=77.08 E-value=11 Score=34.51 Aligned_cols=86 Identities=20% Similarity=0.344 Sum_probs=61.1
Q ss_pred eccCChhhHHHHHhCCCCEEEEcCCCCCCHHHHHHHHhcCCcEEEeCCCCCCHHHHHHHHHHHHhcCCCCceeecccCCC
Q psy17999 67 ASAMDQVSFDFLLSANVPFIKIGSGDSNNIPLIKYAASKQKPLIISTGMLPSIEHVDNIYTTVKQYHSNLSILHCVSAYP 146 (335)
Q Consensus 67 stpfd~~svd~l~~l~v~~~KIaS~d~~n~~LL~~~a~~gkPvilStG~~~tl~Ei~~Av~~i~~g~~~~~~~~c~~g~~ 146 (335)
-|+.+.++++.+.+.|.+|+--+. .|..+++++-+.+.|+|= |.. |+.|+..|.+. |..-
T Consensus 65 GTV~~~e~a~~a~~aGA~FivSP~---~~~~v~~~~~~~~i~~iP--G~~-TptEi~~A~~~---G~~~----------- 124 (196)
T PF01081_consen 65 GTVLTAEQAEAAIAAGAQFIVSPG---FDPEVIEYAREYGIPYIP--GVM-TPTEIMQALEA---GADI----------- 124 (196)
T ss_dssp ES--SHHHHHHHHHHT-SEEEESS-----HHHHHHHHHHTSEEEE--EES-SHHHHHHHHHT---T-SE-----------
T ss_pred EeccCHHHHHHHHHcCCCEEECCC---CCHHHHHHHHHcCCcccC--CcC-CHHHHHHHHHC---CCCE-----------
Confidence 488999999999999999988774 789999999999988875 445 99999998763 3320
Q ss_pred CCCCCcccccCceEEeeecCCCCCCccCCC-chHHHHHHHHCCCCCe
Q psy17999 147 TPYPTVKQYHSNLSILHCVSAYPTPYHDIN-LNVIHTLRSRYPDIPI 192 (335)
Q Consensus 147 ~~~~~~~~~~~~l~llHC~s~YP~~~~~~n-L~~i~~L~~~fp~~pV 192 (335)
| + -||+.. +. .+.|..|+.-||++++
T Consensus 125 -----v-----K--------~FPA~~--~GG~~~ik~l~~p~p~~~~ 151 (196)
T PF01081_consen 125 -----V-----K--------LFPAGA--LGGPSYIKALRGPFPDLPF 151 (196)
T ss_dssp -----E-----E--------ETTTTT--TTHHHHHHHHHTTTTT-EE
T ss_pred -----E-----E--------Eecchh--cCcHHHHHHHhccCCCCeE
Confidence 0 1 256544 66 8889999998988876
No 333
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=76.98 E-value=23 Score=32.21 Aligned_cols=52 Identities=21% Similarity=0.183 Sum_probs=41.4
Q ss_pred HHHHHhCCCCEEEEcCCCC------CCHHHHHHHHhc-CCcEEEeCCCCCCHHHHHHHHH
Q psy17999 75 FDFLLSANVPFIKIGSGDS------NNIPLIKYAASK-QKPLIISTGMLPSIEHVDNIYT 127 (335)
Q Consensus 75 vd~l~~l~v~~~KIaS~d~------~n~~LL~~~a~~-gkPvilStG~~~tl~Ei~~Av~ 127 (335)
+..+.+.|++.+-+.+.+- .|+.+++++.+. +.||+.+-|.. +.+++..+.+
T Consensus 152 ~~~~~~~ga~~iii~~~~~~g~~~g~~~~~i~~i~~~~~ipvi~~GGi~-~~~di~~~~~ 210 (234)
T cd04732 152 AKRFEELGVKAIIYTDISRDGTLSGPNFELYKELAAATGIPVIASGGVS-SLDDIKALKE 210 (234)
T ss_pred HHHHHHcCCCEEEEEeecCCCccCCCCHHHHHHHHHhcCCCEEEecCCC-CHHHHHHHHH
Confidence 4556777899887765432 478999998875 89999999999 9999988765
No 334
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=76.95 E-value=11 Score=38.28 Aligned_cols=78 Identities=8% Similarity=0.120 Sum_probs=57.7
Q ss_pred CCHHHHHHHHHHHHHcCCceEec-cCChhhHHHHHhCCCCEEEEcCC-------CCCCHHHHHHHHh---cCCcEEEeCC
Q psy17999 46 FSQEEYVMLQQCADQVDIMFTAS-AMDQVSFDFLLSANVPFIKIGSG-------DSNNIPLIKYAAS---KQKPLIISTG 114 (335)
Q Consensus 46 l~~e~~~~L~~~~~~~Gi~f~st-pfd~~svd~l~~l~v~~~KIaS~-------d~~n~~LL~~~a~---~gkPvilStG 114 (335)
++++.+++|++ ..+++++.- +.+.+++..+.+.|+|.|.|... ...-...|.++++ ...|||++-|
T Consensus 240 ~tW~~i~~lr~---~~~~pvivKgV~~~~dA~~a~~~G~d~I~vsnhGGr~~d~~~~t~~~L~ei~~~~~~~~~vi~dGG 316 (383)
T cd03332 240 LTWEDLAFLRE---WTDLPIVLKGILHPDDARRAVEAGVDGVVVSNHGGRQVDGSIAALDALPEIVEAVGDRLTVLFDSG 316 (383)
T ss_pred CCHHHHHHHHH---hcCCCEEEecCCCHHHHHHHHHCCCCEEEEcCCCCcCCCCCcCHHHHHHHHHHHhcCCCeEEEeCC
Confidence 66666666665 445665554 89999999999999999998744 2223456666654 2589999999
Q ss_pred CCCCHHHHHHHHH
Q psy17999 115 MLPSIEHVDNIYT 127 (335)
Q Consensus 115 ~~~tl~Ei~~Av~ 127 (335)
.. +=.+|.+|+.
T Consensus 317 Ir-~G~Dv~KALa 328 (383)
T cd03332 317 VR-TGADIMKALA 328 (383)
T ss_pred cC-cHHHHHHHHH
Confidence 99 9999988865
No 335
>PRK00115 hemE uroporphyrinogen decarboxylase; Validated
Probab=76.93 E-value=31 Score=33.86 Aligned_cols=82 Identities=4% Similarity=0.033 Sum_probs=50.5
Q ss_pred cCCHHHHHHHHHHHHHcC----CceEeccCChhhHHHHHhCCCCEEEEcCCCCCCHHHHHHHHhcCCcEEEeCCCC----
Q psy17999 45 EFSQEEYVMLQQCADQVD----IMFTASAMDQVSFDFLLSANVPFIKIGSGDSNNIPLIKYAASKQKPLIISTGML---- 116 (335)
Q Consensus 45 el~~e~~~~L~~~~~~~G----i~f~stpfd~~svd~l~~l~v~~~KIaS~d~~n~~LL~~~a~~gkPvilStG~~---- 116 (335)
++...-+++|.+..++.| |..+|--. ...++.+.+++++.+-+... .++.-.+ -..|.-+.|.-|..
T Consensus 220 ef~~P~~k~i~~~i~~~~~~~~ilh~cg~~-~~~~~~~~~~~~~~is~d~~--~dl~~~k--~~~g~~~~i~Gni~p~ll 294 (346)
T PRK00115 220 EFVLPYMKRIVAELKREHPDVPVILFGKGA-GELLEAMAETGADVVGLDWT--VDLAEAR--RRVGDKKALQGNLDPAVL 294 (346)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCEEEEcCCc-HHHHHHHHhcCCCEEeeCCC--CCHHHHH--HHcCCCeEEEeCCChhHh
Confidence 355567788889988874 34445522 23478888999999888764 4443222 22343333333322
Q ss_pred -CCHHHHHHHHHHHHh
Q psy17999 117 -PSIEHVDNIYTTVKQ 131 (335)
Q Consensus 117 -~tl~Ei~~Av~~i~~ 131 (335)
.|.++|.+.+.-+.+
T Consensus 295 ~gt~e~i~~~~~~~i~ 310 (346)
T PRK00115 295 LAPPEAIEEEVRAILD 310 (346)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 278999988776665
No 336
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=76.76 E-value=15 Score=34.72 Aligned_cols=28 Identities=14% Similarity=0.170 Sum_probs=19.4
Q ss_pred CCcEEEeCCCCCCHHHHHHHHHHHHh-cCC
Q psy17999 106 QKPLIISTGMLPSIEHVDNIYTTVKQ-YHS 134 (335)
Q Consensus 106 gkPvilStG~~~tl~Ei~~Av~~i~~-g~~ 134 (335)
+.|||..+|.. +.+|..+-++..++ |..
T Consensus 66 ~~~vi~gv~~~-~~~~~i~~a~~a~~~Gad 94 (281)
T cd00408 66 RVPVIAGVGAN-STREAIELARHAEEAGAD 94 (281)
T ss_pred CCeEEEecCCc-cHHHHHHHHHHHHHcCCC
Confidence 57888888877 77776666666665 543
No 337
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=76.72 E-value=85 Score=31.38 Aligned_cols=131 Identities=15% Similarity=0.132 Sum_probs=79.5
Q ss_pred hcCCHHH----HHHHHHHHHHcCCceEeccCChhhHHHHHhCCCCEEEEcCCCCCCHHHHHHHHhcCCcEEEeCCCCCCH
Q psy17999 44 LEFSQEE----YVMLQQCADQVDIMFTASAMDQVSFDFLLSANVPFIKIGSGDSNNIPLIKYAASKQKPLIISTGMLPSI 119 (335)
Q Consensus 44 ~el~~e~----~~~L~~~~~~~Gi~f~stpfd~~svd~l~~l~v~~~KIaS~d~~n~~LL~~~a~~gkPvilStG~~~tl 119 (335)
..++..+ -+.|.+.|+++|+.|+..- .++....+++|.+=++..++. ....-...|.-.||+.... ++
T Consensus 179 K~~~~~~~~~~a~~L~~l~~~~~~~lIIND----~vdlAl~~~aDGVHLgq~dl~---~~~aR~llg~~~iIG~S~H-s~ 250 (347)
T PRK02615 179 KTADDRQRLEEAKKLKELCHRYGALFIVND----RVDIALAVDADGVHLGQEDLP---LAVARQLLGPEKIIGRSTT-NP 250 (347)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCeEEEeC----hHHHHHHcCCCEEEeChhhcC---HHHHHHhcCCCCEEEEecC-CH
Confidence 3455544 4668899999999988873 478888999999999987753 2222111333456677777 99
Q ss_pred HHHHHHHHHHHhcCCCCceeecccCCCCCCCCcccccCceEEeeecCCCCCCc----cCCCchHHHHHHHHCCCCCeecC
Q psy17999 120 EHVDNIYTTVKQYHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYPTPY----HDINLNVIHTLRSRYPDIPIGYS 195 (335)
Q Consensus 120 ~Ei~~Av~~i~~g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~s~YP~~~----~~~nL~~i~~L~~~fp~~pVG~S 195 (335)
+|+..|.+. |. +++.+= .-|||+. ..+.+..+..+.+.+ .+||---
T Consensus 251 ~e~~~A~~~---Ga------------------------DYI~lG--Pvf~T~tKp~~~~~Gle~l~~~~~~~-~iPv~Ai 300 (347)
T PRK02615 251 EEMAKAIAE---GA------------------------DYIGVG--PVFPTPTKPGKAPAGLEYLKYAAKEA-PIPWFAI 300 (347)
T ss_pred HHHHHHHHc---CC------------------------CEEEEC--CCcCCCCCCCCCCCCHHHHHHHHHhC-CCCEEEE
Confidence 999888642 32 222221 1133321 246678888888878 6887211
Q ss_pred CCCCChHHHHHHHHcCCc
Q psy17999 196 GHENGVHVCYAAVAMGAQ 213 (335)
Q Consensus 196 dHt~g~~~~~aAvalGA~ 213 (335)
+-.. ..-.....+.||+
T Consensus 301 GGI~-~~ni~~l~~~Ga~ 317 (347)
T PRK02615 301 GGID-KSNIPEVLQAGAK 317 (347)
T ss_pred CCCC-HHHHHHHHHcCCc
Confidence 1111 2223345577887
No 338
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=76.70 E-value=52 Score=28.90 Aligned_cols=86 Identities=12% Similarity=0.095 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHcCCceEeccCCh------hhHHHHHhCCCCEEEEcCCCCCCHHHHHHHHhcCCcEEEeCCCC------
Q psy17999 49 EEYVMLQQCADQVDIMFTASAMDQ------VSFDFLLSANVPFIKIGSGDSNNIPLIKYAASKQKPLIISTGML------ 116 (335)
Q Consensus 49 e~~~~L~~~~~~~Gi~f~stpfd~------~svd~l~~l~v~~~KIaS~d~~n~~LL~~~a~~gkPvilStG~~------ 116 (335)
+-...+.+++++.|+.+....... +.++.+.+-+++.+-+.+.+.....++..+.+.+.|+|.=.+..
T Consensus 16 ~~~~g~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~~~~~l~~~~ip~v~~~~~~~~~~~~ 95 (264)
T cd01537 16 QVLKGIEEAAKAAGYQVLLANSQNDAEKQLSALENLIARGVDGIIIAPSDLTAPTIVKLARKAGIPVVLVDRDIPDGDRV 95 (264)
T ss_pred HHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCCCcchhHHHHhhhcCCCEEEeccCCCCCccc
Confidence 456677788888999877665542 22344455589999888887777666788888899998632211
Q ss_pred --C---CHHHHHHHHHHHHh-cCC
Q psy17999 117 --P---SIEHVDNIYTTVKQ-YHS 134 (335)
Q Consensus 117 --~---tl~Ei~~Av~~i~~-g~~ 134 (335)
. ..+....+++++.+ +..
T Consensus 96 ~~v~~d~~~~~~~~~~~l~~~g~~ 119 (264)
T cd01537 96 PSVGSDNEQAGYLAGEHLAEKGHR 119 (264)
T ss_pred ceEecCcHHHHHHHHHHHHHhcCC
Confidence 0 23445556666665 443
No 339
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=76.67 E-value=5.9 Score=36.37 Aligned_cols=151 Identities=16% Similarity=0.267 Sum_probs=77.3
Q ss_pred cCCHHHHHHHHHHHHHcCCceEeccCChhhHHHHHhCCCCEEEEcCCCCCCHHHHHHHHhcCC-cEEEeCCCCCCHHHHH
Q psy17999 45 EFSQEEYVMLQQCADQVDIMFTASAMDQVSFDFLLSANVPFIKIGSGDSNNIPLIKYAASKQK-PLIISTGMLPSIEHVD 123 (335)
Q Consensus 45 el~~e~~~~L~~~~~~~Gi~f~stpfd~~svd~l~~l~v~~~KIaS~d~~n~~LL~~~a~~gk-PvilStG~~~tl~Ei~ 123 (335)
.|+.++-.++.+...+.|+..+-..|. +..-+.++.++.+.+... .-+..-... ..++++
T Consensus 10 ~~~~~~k~~i~~~L~~~Gv~~iEvg~~------------------~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~i~ 70 (237)
T PF00682_consen 10 AFSTEEKLEIAKALDEAGVDYIEVGFP------------------FASEDDFEQVRRLREALPNARLQALCRA-NEEDIE 70 (237)
T ss_dssp T--HHHHHHHHHHHHHHTTSEEEEEHC------------------TSSHHHHHHHHHHHHHHHSSEEEEEEES-CHHHHH
T ss_pred CcCHHHHHHHHHHHHHhCCCEEEEccc------------------ccCHHHHHHhhhhhhhhcccccceeeee-hHHHHH
Confidence 367777777766666666554443311 222233444555544311 222222234 888999
Q ss_pred HHHHHHHh-cCCCCceeecccCCCCCCCCcccccCceEEeeecCCCCCCccCCC------c----hHHHHHHHHCCCCCe
Q psy17999 124 NIYTTVKQ-YHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYPTPYHDIN------L----NVIHTLRSRYPDIPI 192 (335)
Q Consensus 124 ~Av~~i~~-g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~s~YP~~~~~~n------L----~~i~~L~~~fp~~pV 192 (335)
.+++.+.. +.. .+.++-.+|.+-.. ...+ + ..+...|+ . +..|
T Consensus 71 ~~~~~~~~~g~~-----------------------~i~i~~~~s~~~~~-~~~~~~~~~~~~~~~~~v~~ak~-~-g~~v 124 (237)
T PF00682_consen 71 RAVEAAKEAGID-----------------------IIRIFISVSDLHIR-KNLNKSREEALERIEEAVKYAKE-L-GYEV 124 (237)
T ss_dssp HHHHHHHHTTSS-----------------------EEEEEEETSHHHHH-HHTCSHHHHHHHHHHHHHHHHHH-T-TSEE
T ss_pred HHHHhhHhccCC-----------------------EEEecCcccHHHHH-HhhcCCHHHHHHHHHHHHHHHHh-c-CCce
Confidence 98886665 433 34333333321100 1111 1 22333343 4 5656
Q ss_pred ecC--C---CCCC--hHHHHHHHHcCCcEEEeccCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q psy17999 193 GYS--G---HENG--VHVCYAAVAMGAQIIEKHFTLDKSWKGSDHASSLTPPELKALVTGIRDIE 250 (335)
Q Consensus 193 G~S--d---Ht~g--~~~~~aAvalGA~vIEkH~tld~~~~G~Dh~~Sl~p~el~~lv~~ir~~~ 250 (335)
.|+ | ++.. ...+..+..+|++.|- + .|..-.++|+++..+++.+++..
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~----l------~Dt~G~~~P~~v~~lv~~~~~~~ 179 (237)
T PF00682_consen 125 AFGCEDASRTDPEELLELAEALAEAGADIIY----L------ADTVGIMTPEDVAELVRALREAL 179 (237)
T ss_dssp EEEETTTGGSSHHHHHHHHHHHHHHT-SEEE----E------EETTS-S-HHHHHHHHHHHHHHS
T ss_pred EeCccccccccHHHHHHHHHHHHHcCCeEEE----e------eCccCCcCHHHHHHHHHHHHHhc
Confidence 442 1 2222 4456677888999775 2 27888899999999999988754
No 340
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=76.39 E-value=22 Score=35.35 Aligned_cols=77 Identities=16% Similarity=0.160 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHcCCceEe----ccCChhhHHHHHhCCCCEEEEcCCCCC----------------------CHH---HHH
Q psy17999 50 EYVMLQQCADQVDIMFTA----SAMDQVSFDFLLSANVPFIKIGSGDSN----------------------NIP---LIK 100 (335)
Q Consensus 50 ~~~~L~~~~~~~Gi~f~s----tpfd~~svd~l~~l~v~~~KIaS~d~~----------------------n~~---LL~ 100 (335)
++..|.+..+..+++++. ...+.+.+..+.+.|+|+|-|+..-=+ .+| .|.
T Consensus 174 ~le~i~~i~~~~~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~Vsg~GGt~~~~ie~~R~~~~~~~~~~~~~g~pt~~~l~ 253 (352)
T PRK05437 174 WLDNIAEIVSALPVPVIVKEVGFGISKETAKRLADAGVKAIDVAGAGGTSWAAIENYRARDDRLASYFADWGIPTAQSLL 253 (352)
T ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCcHHHHHHHHHcCCCEEEECCCCCCCccchhhhhhhccccccccccccCCHHHHHH
Confidence 346677777777888885 336778888999999999999664211 122 444
Q ss_pred HHHhc--CCcEEEeCCCCCCHHHHHHHHH
Q psy17999 101 YAASK--QKPLIISTGMLPSIEHVDNIYT 127 (335)
Q Consensus 101 ~~a~~--gkPvilStG~~~tl~Ei~~Av~ 127 (335)
.+.+. +.|||.+-|.. +-.++.+++.
T Consensus 254 ~i~~~~~~ipvia~GGI~-~~~dv~k~l~ 281 (352)
T PRK05437 254 EARSLLPDLPIIASGGIR-NGLDIAKALA 281 (352)
T ss_pred HHHHhcCCCeEEEECCCC-CHHHHHHHHH
Confidence 45553 78999999999 9988888765
No 341
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=76.25 E-value=17 Score=31.44 Aligned_cols=86 Identities=13% Similarity=0.041 Sum_probs=51.0
Q ss_pred CCcEEEeCCCCCC----HHHHHHHHHHHHh-cCCCCceeecccCCCCCCCCcccccCceEEeeecCCCCCCc-cCCCchH
Q psy17999 106 QKPLIISTGMLPS----IEHVDNIYTTVKQ-YHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYPTPY-HDINLNV 179 (335)
Q Consensus 106 gkPvilStG~~~t----l~Ei~~Av~~i~~-g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~s~YP~~~-~~~nL~~ 179 (335)
+.||++.+|.. + .++....++...+ |. +.+++++...|+.+. .+--+..
T Consensus 48 ~~~v~~~v~~~-~~~~~~~~~~~~a~~a~~~Ga------------------------d~i~v~~~~~~~~~~~~~~~~~~ 102 (201)
T cd00945 48 DVPVIVVVGFP-TGLTTTEVKVAEVEEAIDLGA------------------------DEIDVVINIGSLKEGDWEEVLEE 102 (201)
T ss_pred CCeEEEEecCC-CCCCcHHHHHHHHHHHHHcCC------------------------CEEEEeccHHHHhCCCHHHHHHH
Confidence 48999999988 7 7777776666665 43 566666654333221 2333555
Q ss_pred HHHHHHHC-CCCCee---cCCCCCChH----HHHHHHHcCCcEEE
Q psy17999 180 IHTLRSRY-PDIPIG---YSGHENGVH----VCYAAVAMGAQIIE 216 (335)
Q Consensus 180 i~~L~~~f-p~~pVG---~SdHt~g~~----~~~aAvalGA~vIE 216 (335)
+..+.+.. .++||- ++.++.... ++..+...|++.|-
T Consensus 103 ~~~i~~~~~~~~pv~iy~~p~~~~~~~~~~~~~~~~~~~g~~~iK 147 (201)
T cd00945 103 IAAVVEAADGGLPLKVILETRGLKTADEIAKAARIAAEAGADFIK 147 (201)
T ss_pred HHHHHHHhcCCceEEEEEECCCCCCHHHHHHHHHHHHHhCCCEEE
Confidence 56666662 278873 356663322 22334568999885
No 342
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=76.04 E-value=82 Score=32.63 Aligned_cols=131 Identities=12% Similarity=0.097 Sum_probs=78.8
Q ss_pred cCCHH----HHHHHHHHHHHcCCceEeccCChhhHHHHHhCCCCEEEEcCCCCCCHHHHHHHHhcCCcEEEeCCCCCCHH
Q psy17999 45 EFSQE----EYVMLQQCADQVDIMFTASAMDQVSFDFLLSANVPFIKIGSGDSNNIPLIKYAASKQKPLIISTGMLPSIE 120 (335)
Q Consensus 45 el~~e----~~~~L~~~~~~~Gi~f~stpfd~~svd~l~~l~v~~~KIaS~d~~n~~LL~~~a~~gkPvilStG~~~tl~ 120 (335)
.++.+ ..++|.+.|+++|+.++.. ..+++..++|.+.+=++..++.- .-.+. ..+...||+.... +++
T Consensus 330 ~~~~~~~~~~a~~l~~~~~~~~~~liin----d~~~lA~~~~adGvHl~~~d~~~-~~~r~--~~~~~~~iG~S~h-~~~ 401 (502)
T PLN02898 330 EAETREFIEEAKACLAICRSYGVPLLIN----DRVDVALACDADGVHLGQSDMPV-RLARS--LLGPGKIIGVSCK-TPE 401 (502)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCEEEEc----ChHHHHHhcCCCEEEeChHhcCH-HHHHH--hcCCCCEEEEeCC-CHH
Confidence 45654 4566777899999998876 23678888999999998877531 12222 2344567776667 999
Q ss_pred HHHHHHHHHHhcCCCCceeecccCCCCCCCCcccccCceEE---eeecCCCCCCccCCCchHHHHHHHHCCCCCeecCCC
Q psy17999 121 HVDNIYTTVKQYHSNLSILHCVSAYPTPYPTVKQYHSNLSI---LHCVSAYPTPYHDINLNVIHTLRSRYPDIPIGYSGH 197 (335)
Q Consensus 121 Ei~~Av~~i~~g~~~~~~~~c~~g~~~~~~~~~~~~~~l~l---lHC~s~YP~~~~~~nL~~i~~L~~~fp~~pVG~SdH 197 (335)
|+..|.+. |. +++. +.-+++-|. ..-.++..+..+.+.+ ++||---+.
T Consensus 402 e~~~a~~~---ga------------------------dyi~~gpif~t~tk~~-~~~~g~~~~~~~~~~~-~~Pv~aiGG 452 (502)
T PLN02898 402 QAEQAWKD---GA------------------------DYIGCGGVFPTNTKAN-NKTIGLDGLREVCEAS-KLPVVAIGG 452 (502)
T ss_pred HHHHHhhc---CC------------------------CEEEECCeecCCCCCC-CCCCCHHHHHHHHHcC-CCCEEEECC
Confidence 99887652 22 2222 122222232 1345778888887776 889833222
Q ss_pred CCChHHHHHHHHcCCc
Q psy17999 198 ENGVHVCYAAVAMGAQ 213 (335)
Q Consensus 198 t~g~~~~~aAvalGA~ 213 (335)
.. ..-.....+.||.
T Consensus 453 I~-~~~~~~~~~~G~~ 467 (502)
T PLN02898 453 IS-ASNAASVMESGAP 467 (502)
T ss_pred CC-HHHHHHHHHcCCC
Confidence 22 2223345566665
No 343
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=76.00 E-value=21 Score=37.11 Aligned_cols=81 Identities=12% Similarity=0.121 Sum_probs=61.5
Q ss_pred CHHHHHHHHHHHHHc-CCceEe-ccCChhhHHHHHhCCCCEEEEcCCC----C---------CCHHHHHHHHh----cCC
Q psy17999 47 SQEEYVMLQQCADQV-DIMFTA-SAMDQVSFDFLLSANVPFIKIGSGD----S---------NNIPLIKYAAS----KQK 107 (335)
Q Consensus 47 ~~e~~~~L~~~~~~~-Gi~f~s-tpfd~~svd~l~~l~v~~~KIaS~d----~---------~n~~LL~~~a~----~gk 107 (335)
+...+..+++..+++ ++.+++ .+-+.+.+..|.+.|+|++|||=+- . -.+.++..+++ .+.
T Consensus 252 ~~~~~~~i~~ik~~~p~~~v~agnv~t~~~a~~l~~aGad~v~vgig~gsictt~~~~~~~~p~~~av~~~~~~~~~~~~ 331 (479)
T PRK07807 252 QEKMLEALRAVRALDPGVPIVAGNVVTAEGTRDLVEAGADIVKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAAARELGA 331 (479)
T ss_pred cHHHHHHHHHHHHHCCCCeEEeeccCCHHHHHHHHHcCCCEEEECccCCcccccccccCCchhHHHHHHHHHHHHHhcCC
Confidence 334455555555565 799999 9999999999999999999954332 2 24556666665 489
Q ss_pred cEEEeCCCCCCHHHHHHHHHH
Q psy17999 108 PLIISTGMLPSIEHVDNIYTT 128 (335)
Q Consensus 108 PvilStG~~~tl~Ei~~Av~~ 128 (335)
|||-.=|.. +..++.+|+..
T Consensus 332 ~via~ggi~-~~~~~~~al~~ 351 (479)
T PRK07807 332 HVWADGGVR-HPRDVALALAA 351 (479)
T ss_pred cEEecCCCC-CHHHHHHHHHc
Confidence 999999999 99999998763
No 344
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=75.85 E-value=71 Score=32.64 Aligned_cols=74 Identities=15% Similarity=0.126 Sum_probs=47.8
Q ss_pred CCHHHHHHHHHHHHHc-----CC--ceEecc--CChhhHHHHHhCCCCEEEEcCCCCCCHHHHHHHHhcCCcEEEeCCCC
Q psy17999 46 FSQEEYVMLQQCADQV-----DI--MFTASA--MDQVSFDFLLSANVPFIKIGSGDSNNIPLIKYAASKQKPLIISTGML 116 (335)
Q Consensus 46 l~~e~~~~L~~~~~~~-----Gi--~f~stp--fd~~svd~l~~l~v~~~KIaS~d~~n~~LL~~~a~~gkPvilStG~~ 116 (335)
|+.+++.+|.+..++. ++ .+-+.| .+.+.++.+.++|+..+-||=-.. |-..|+.+++. .
T Consensus 116 l~~~~l~~ll~~l~~~~~~~~~~e~tie~np~~lt~e~l~~l~~aG~~risiGvqS~-~~~~L~~l~r~----------~ 184 (453)
T PRK09249 116 LSPEQLRRLMALLREHFNFAPDAEISIEIDPRELDLEMLDALRELGFNRLSLGVQDF-DPEVQKAVNRI----------Q 184 (453)
T ss_pred CCHHHHHHHHHHHHHhCCCCCCCEEEEEecCCcCCHHHHHHHHHcCCCEEEECCCCC-CHHHHHHhCCC----------C
Confidence 5677788887777654 22 223343 566777777778887777764443 44566666541 3
Q ss_pred CCHHHHHHHHHHHHh
Q psy17999 117 PSIEHVDNIYTTVKQ 131 (335)
Q Consensus 117 ~tl~Ei~~Av~~i~~ 131 (335)
+.+++.++++.+++
T Consensus 185 -~~~~~~~ai~~l~~ 198 (453)
T PRK09249 185 -PFEFTFALVEAARE 198 (453)
T ss_pred -CHHHHHHHHHHHHH
Confidence 77788888777765
No 345
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=75.81 E-value=83 Score=30.79 Aligned_cols=144 Identities=12% Similarity=0.072 Sum_probs=78.8
Q ss_pred hcCCHHHHHHHHHHHHHcCCceEeccCChhhHHHHHhCCCCEEEEcCC----------CCCC-----------------H
Q psy17999 44 LEFSQEEYVMLQQCADQVDIMFTASAMDQVSFDFLLSANVPFIKIGSG----------DSNN-----------------I 96 (335)
Q Consensus 44 ~el~~e~~~~L~~~~~~~Gi~f~stpfd~~svd~l~~l~v~~~KIaS~----------d~~n-----------------~ 96 (335)
-+|+.++..++.+.-. +++..+.+.|.|.+.|..+ ..+| .
T Consensus 137 ~~mt~~eI~~~i~~~~-------------~aA~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~ 203 (338)
T cd04733 137 RAMTEEEIEDVIDRFA-------------HAARLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLL 203 (338)
T ss_pred CcCCHHHHHHHHHHHH-------------HHHHHHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHH
Confidence 3688888776665322 2455566677777777544 3333 2
Q ss_pred HHHHHHHhc---CCcEEEeC-------CCCCCHHHHHHHHHHHHhcCCCCceeecccCCCCCCCCcccccCceEEeeecC
Q psy17999 97 PLIKYAASK---QKPLIIST-------GMLPSIEHVDNIYTTVKQYHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVS 166 (335)
Q Consensus 97 ~LL~~~a~~---gkPvilSt-------G~~~tl~Ei~~Av~~i~~g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~s 166 (335)
..|+++-+. +.||.+.. |.. +.+|....++.+...+- ..+.+..|... +..... .
T Consensus 204 EiI~aIR~avG~d~~v~vris~~~~~~~g~-~~eea~~ia~~Le~~Gv--d~iev~~g~~~----------~~~~~~--~ 268 (338)
T cd04733 204 EIYDAIRAAVGPGFPVGIKLNSADFQRGGF-TEEDALEVVEALEEAGV--DLVELSGGTYE----------SPAMAG--A 268 (338)
T ss_pred HHHHHHHHHcCCCCeEEEEEcHHHcCCCCC-CHHHHHHHHHHHHHcCC--CEEEecCCCCC----------Cccccc--c
Confidence 455565543 35777755 344 88888777777765222 22222222110 000000 0
Q ss_pred CCCCC--ccCCCchHHHHHHHHCCCCCeecCCCCCChHHHHHHHHcC-CcEEE
Q psy17999 167 AYPTP--YHDINLNVIHTLRSRYPDIPIGYSGHENGVHVCYAAVAMG-AQIIE 216 (335)
Q Consensus 167 ~YP~~--~~~~nL~~i~~L~~~fp~~pVG~SdHt~g~~~~~aAvalG-A~vIE 216 (335)
..+.. .+..++.....+|+.+ ++||...+--.....+..+++.| |+++-
T Consensus 269 ~~~~~~~~~~~~~~~~~~ik~~v-~iPVi~~G~i~t~~~a~~~l~~g~aD~V~ 320 (338)
T cd04733 269 KKESTIAREAYFLEFAEKIRKVT-KTPLMVTGGFRTRAAMEQALASGAVDGIG 320 (338)
T ss_pred ccCCccccchhhHHHHHHHHHHc-CCCEEEeCCCCCHHHHHHHHHcCCCCeee
Confidence 00000 0223456677889998 89997665555567777788877 56554
No 346
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=75.70 E-value=14 Score=34.24 Aligned_cols=136 Identities=15% Similarity=0.163 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHcCCceEec--cCChhhHHHHHhCCCCEEEEcCCCCCCHHHHHHHHhc-CC-cEEEe------------
Q psy17999 49 EEYVMLQQCADQVDIMFTAS--AMDQVSFDFLLSANVPFIKIGSGDSNNIPLIKYAASK-QK-PLIIS------------ 112 (335)
Q Consensus 49 e~~~~L~~~~~~~Gi~f~st--pfd~~svd~l~~l~v~~~KIaS~d~~n~~LL~~~a~~-gk-PvilS------------ 112 (335)
..+..+.+.+++.++++... .-+.++++.+.+.|++.+-|+|.-++|..+++++++. |. -|++|
T Consensus 60 ~n~~~i~~i~~~~~~~i~vgGGIrs~ed~~~ll~~Ga~~Vvigt~~~~~~~~l~~~~~~~g~~~ivvslD~~~g~~v~~~ 139 (229)
T PF00977_consen 60 SNLELIKEIAKETGIPIQVGGGIRSIEDAERLLDAGADRVVIGTEALEDPELLEELAERYGSQRIVVSLDARDGYKVATN 139 (229)
T ss_dssp HHHHHHHHHHHHSSSEEEEESSE-SHHHHHHHHHTT-SEEEESHHHHHCCHHHHHHHHHHGGGGEEEEEEEEETEEEEET
T ss_pred hHHHHHHHHHhcCCccEEEeCccCcHHHHHHHHHhCCCEEEeChHHhhchhHHHHHHHHcCcccEEEEEEeeeceEEEec
Confidence 45777888999977766654 5788999999999999999999999999999998874 33 34433
Q ss_pred CCCC---CCHHHHHHHHHHHHh-cCCCCceeecccCCCCCCCCcccccCceEEeeecCCCCCCccCCCchHHHHHHHHCC
Q psy17999 113 TGML---PSIEHVDNIYTTVKQ-YHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYPTPYHDINLNVIHTLRSRYP 188 (335)
Q Consensus 113 tG~~---~tl~Ei~~Av~~i~~-g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~s~YP~~~~~~nL~~i~~L~~~fp 188 (335)
-+.. .++.|+. +.+.+ |.. =+|+.+++.==+- .-.|+..+..+++.+
T Consensus 140 gw~~~~~~~~~~~~---~~~~~~g~~------------------------~ii~tdi~~dGt~-~G~d~~~~~~l~~~~- 190 (229)
T PF00977_consen 140 GWQESSGIDLEEFA---KRLEELGAG------------------------EIILTDIDRDGTM-QGPDLELLKQLAEAV- 190 (229)
T ss_dssp TTTEEEEEEHHHHH---HHHHHTT-S------------------------EEEEEETTTTTTS-SS--HHHHHHHHHHH-
T ss_pred CccccCCcCHHHHH---HHHHhcCCc------------------------EEEEeeccccCCc-CCCCHHHHHHHHHHc-
Confidence 2221 1344444 44444 432 3355665432222 347888899999999
Q ss_pred CCCeecCCCCCChHHHHHHHHcCCc
Q psy17999 189 DIPIGYSGHENGVHVCYAAVAMGAQ 213 (335)
Q Consensus 189 ~~pVG~SdHt~g~~~~~aAvalGA~ 213 (335)
++||.+|+=-....=...+...|++
T Consensus 191 ~~~viasGGv~~~~Dl~~l~~~G~~ 215 (229)
T PF00977_consen 191 NIPVIASGGVRSLEDLRELKKAGID 215 (229)
T ss_dssp SSEEEEESS--SHHHHHHHHHTTEC
T ss_pred CCCEEEecCCCCHHHHHHHHHCCCc
Confidence 9999887644333333334466664
No 347
>PRK11303 DNA-binding transcriptional regulator FruR; Provisional
Probab=75.67 E-value=48 Score=31.16 Aligned_cols=62 Identities=15% Similarity=0.131 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHcCCceEecc--CChh----hHHHHHhCCCCEEEEcCCCCCCHHHHHHHHhcCCcEEE
Q psy17999 50 EYVMLQQCADQVDIMFTASA--MDQV----SFDFLLSANVPFIKIGSGDSNNIPLIKYAASKQKPLII 111 (335)
Q Consensus 50 ~~~~L~~~~~~~Gi~f~stp--fd~~----svd~l~~l~v~~~KIaS~d~~n~~LL~~~a~~gkPvil 111 (335)
-+..+.+.|++.|..++... .|.+ .++.+.+.++|.+-+.+....+.+.++.+.+.+.||++
T Consensus 79 l~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~l~~~~iPvV~ 146 (328)
T PRK11303 79 IAKYLERQARQRGYQLLIACSDDQPDNEMRCAEHLLQRQVDALIVSTSLPPEHPFYQRLQNDGLPIIA 146 (328)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCChHHHHHHHhcCCCEEE
Confidence 35567788899998866533 2332 24455566899998877655567888888888999875
No 348
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=75.65 E-value=15 Score=36.28 Aligned_cols=84 Identities=11% Similarity=0.184 Sum_probs=51.8
Q ss_pred HHHhhcCCHHHHHHHHHHHHHcCCceE----eccC-------Ch-hh---HHHHHhCC-CCEEEEcCCC-----------
Q psy17999 40 HKQHLEFSQEEYVMLQQCADQVDIMFT----ASAM-------DQ-VS---FDFLLSAN-VPFIKIGSGD----------- 92 (335)
Q Consensus 40 ~~~~~el~~e~~~~L~~~~~~~Gi~f~----stpf-------d~-~s---vd~l~~l~-v~~~KIaS~d----------- 92 (335)
+.++..|..+=++.+++.+ |..|. .++. +. +. ++.|++.| +|++-|..+.
T Consensus 187 lenR~r~~~eiv~~ir~~v---g~~~~v~iRl~~~~~~~~G~~~~e~~~~~~~l~~~G~vd~i~vs~g~~~~~~~~~~~~ 263 (343)
T cd04734 187 LENRMRFLLEVLAAVRAAV---GPDFIVGIRISGDEDTEGGLSPDEALEIAARLAAEGLIDYVNVSAGSYYTLLGLAHVV 263 (343)
T ss_pred HHHHhHHHHHHHHHHHHHc---CCCCeEEEEeehhhccCCCCCHHHHHHHHHHHHhcCCCCEEEeCCCCCCccccccccc
Confidence 3345566666666666554 44332 2221 22 22 35666777 8999885432
Q ss_pred -------CCCHHHHHHHHh-cCCcEEEeCCCCCCHHHHHHHHH
Q psy17999 93 -------SNNIPLIKYAAS-KQKPLIISTGMLPSIEHVDNIYT 127 (335)
Q Consensus 93 -------~~n~~LL~~~a~-~gkPvilStG~~~tl~Ei~~Av~ 127 (335)
-.++++++.+.+ .+.|||.+-|.. |.++++++++
T Consensus 264 ~~~~~~~~~~~~~~~~ik~~~~ipvi~~G~i~-~~~~~~~~l~ 305 (343)
T cd04734 264 PSMGMPPGPFLPLAARIKQAVDLPVFHAGRIR-DPAEAEQALA 305 (343)
T ss_pred CCCCCCcchhHHHHHHHHHHcCCCEEeeCCCC-CHHHHHHHHH
Confidence 124677776655 488999988888 9988887754
No 349
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=75.49 E-value=32 Score=32.73 Aligned_cols=147 Identities=17% Similarity=0.207 Sum_probs=78.8
Q ss_pred hcCCHHHHHHHHHHHHHcCCceEeccCChhhHHHHHhCCCCEEEEcCCCCC--CHHHHHHHHhcCC-cEEEeCCCCCCHH
Q psy17999 44 LEFSQEEYVMLQQCADQVDIMFTASAMDQVSFDFLLSANVPFIKIGSGDSN--NIPLIKYAASKQK-PLIISTGMLPSIE 120 (335)
Q Consensus 44 ~el~~e~~~~L~~~~~~~Gi~f~stpfd~~svd~l~~l~v~~~KIaS~d~~--n~~LL~~~a~~gk-PvilStG~~~tl~ 120 (335)
..||.++-.++.+.-.+.| |+.+-++|.-.. ....++.+++.++ +-+..-... +.+
T Consensus 17 ~~~s~~~k~~i~~~L~~~G--------------------v~~IEvG~P~~~~~~~~~~~~l~~~~~~~~v~~~~r~-~~~ 75 (262)
T cd07948 17 AFFDTEDKIEIAKALDAFG--------------------VDYIELTSPAASPQSRADCEAIAKLGLKAKILTHIRC-HMD 75 (262)
T ss_pred CCCCHHHHHHHHHHHHHcC--------------------CCEEEEECCCCCHHHHHHHHHHHhCCCCCcEEEEecC-CHH
Confidence 3577777776666555555 555555443222 2233455554443 444433444 888
Q ss_pred HHHHHHHHHHhcCCCCceeecccCCCCCCCCcccccCceEEeeecCC------CCCCc-cCCC--chHHHHHHHHCCCCC
Q psy17999 121 HVDNIYTTVKQYHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSA------YPTPY-HDIN--LNVIHTLRSRYPDIP 191 (335)
Q Consensus 121 Ei~~Av~~i~~g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~s~------YP~~~-~~~n--L~~i~~L~~~fp~~p 191 (335)
+++.|++. |-. .+.+.-++|. ..... +.++ ...+...|+ . ++.
T Consensus 76 di~~a~~~---g~~-----------------------~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~-~-G~~ 127 (262)
T cd07948 76 DARIAVET---GVD-----------------------GVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKS-K-GIE 127 (262)
T ss_pred HHHHHHHc---CcC-----------------------EEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHH-C-CCe
Confidence 88888763 322 3444444442 22222 1122 122233344 3 566
Q ss_pred eecC-CCCCC------hHHHHHHHHcCCcEEEeccCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q psy17999 192 IGYS-GHENG------VHVCYAAVAMGAQIIEKHFTLDKSWKGSDHASSLTPPELKALVTGIRDI 249 (335)
Q Consensus 192 VG~S-dHt~g------~~~~~aAvalGA~vIEkH~tld~~~~G~Dh~~Sl~p~el~~lv~~ir~~ 249 (335)
|.++ -.+.+ ......+..+||+.| .+ .|..-.++|.++.++++.+++.
T Consensus 128 v~~~~eda~r~~~~~l~~~~~~~~~~g~~~i----~l------~Dt~G~~~P~~v~~~~~~~~~~ 182 (262)
T cd07948 128 VRFSSEDSFRSDLVDLLRVYRAVDKLGVNRV----GI------ADTVGIATPRQVYELVRTLRGV 182 (262)
T ss_pred EEEEEEeeCCCCHHHHHHHHHHHHHcCCCEE----EE------CCcCCCCCHHHHHHHHHHHHHh
Confidence 6432 11221 233456778899854 33 2777889999999999999863
No 350
>cd01310 TatD_DNAse TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.
Probab=75.45 E-value=62 Score=29.15 Aligned_cols=112 Identities=21% Similarity=0.269 Sum_probs=65.4
Q ss_pred CHHHHHHHHHHHHHcCCceEeccCChhh--------HHHHHh----CCCCEE-EEcCCCCCC-----------HHHHHHH
Q psy17999 47 SQEEYVMLQQCADQVDIMFTASAMDQVS--------FDFLLS----ANVPFI-KIGSGDSNN-----------IPLIKYA 102 (335)
Q Consensus 47 ~~e~~~~L~~~~~~~Gi~f~stpfd~~s--------vd~l~~----l~v~~~-KIaS~d~~n-----------~~LL~~~ 102 (335)
..+++.++.+.+++..-.+.+.-+.+.. ++.+++ .++.++ +||-..... .++++.+
T Consensus 38 ~~~~~~~~~~la~~~~~i~~~~G~hP~~~~~~~~~~~~~l~~~~~~~~~~~IGeiGld~~~~~~~~~~q~~~~~~~~~~a 117 (251)
T cd01310 38 DLKSSKRALELAKKYDNVYAAVGLHPHDADEHVDEDLDLLELLAANPKVVAIGEIGLDYYRDKSPREVQKEVFRAQLELA 117 (251)
T ss_pred CHHHHHHHHHHHHhCCCeEEEEeeCcchhhcCCHHHHHHHHHHhcCCCEEEEEeeecCcCCCCCCHHHHHHHHHHHHHHH
Confidence 3457888888888884333443344432 444443 245566 677432222 2257777
Q ss_pred HhcCCcEEEeCCCCCCHHHHHHHHHHHHhcC-CCCceeecccCCCCCCCCcccccCceEEeeecCCCCCCccCCCchHHH
Q psy17999 103 ASKQKPLIISTGMLPSIEHVDNIYTTVKQYH-SNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYPTPYHDINLNVIH 181 (335)
Q Consensus 103 a~~gkPvilStG~~~tl~Ei~~Av~~i~~g~-~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~s~YP~~~~~~nL~~i~ 181 (335)
.+.++||++=||.+ ..++ ++.+++.. . ..+++||.+..+ ..+.
T Consensus 118 ~e~~~pv~iH~~~~--~~~~---~~l~~~~~~~-----------------------~~~i~H~~~~~~--------~~~~ 161 (251)
T cd01310 118 KELNLPVVIHSRDA--HEDV---LEILKEYGPP-----------------------KRGVFHCFSGSA--------EEAK 161 (251)
T ss_pred HHhCCCeEEEeeCc--hHHH---HHHHHhcCCC-----------------------CCEEEEccCCCH--------HHHH
Confidence 78899999999965 3344 44455422 2 677889986432 2444
Q ss_pred HHHHHCCCCCeecCC
Q psy17999 182 TLRSRYPDIPIGYSG 196 (335)
Q Consensus 182 ~L~~~fp~~pVG~Sd 196 (335)
.+.+ +++-+++|.
T Consensus 162 ~~~~--~g~~~~~~~ 174 (251)
T cd01310 162 ELLD--LGFYISISG 174 (251)
T ss_pred HHHH--cCCEEEeee
Confidence 4544 478787764
No 351
>PRK06354 pyruvate kinase; Provisional
Probab=75.44 E-value=15 Score=39.30 Aligned_cols=87 Identities=18% Similarity=0.214 Sum_probs=63.7
Q ss_pred CHHHHHHHHHHHHH---cCCceEeccCChhhHHHHH---hCCCCEEEEcCCCCCC-----------HHHHHHHHhcCCcE
Q psy17999 47 SQEEYVMLQQCADQ---VDIMFTASAMDQVSFDFLL---SANVPFIKIGSGDSNN-----------IPLIKYAASKQKPL 109 (335)
Q Consensus 47 ~~e~~~~L~~~~~~---~Gi~f~stpfd~~svd~l~---~l~v~~~KIaS~d~~n-----------~~LL~~~a~~gkPv 109 (335)
+.++..++++|.++ ..+.+++-.-+.++++-++ +. +|.+-||-+||.- -.+++.+.+.||||
T Consensus 202 ~~~dv~~~r~~l~~~~~~~~~iiaKIEt~eav~nldeI~~~-~DgImVaRGDLgve~g~e~v~~~qk~ii~~~~~~gkpv 280 (590)
T PRK06354 202 NPSDVLEIRELIEEHNGKHIPIIAKIEKQEAIDNIDAILEL-CDGLMVARGDLGVEIPAEEVPLLQKRLIKKANRLGKPV 280 (590)
T ss_pred CHHHHHHHHHHHHHhcCCCceEEEEECCHHHHHhHHHHHHh-cCEEEEccchhhcccCcHHHHHHHHHHHHHHHHcCCCE
Confidence 55777778888743 2466777777777765444 34 8999999998764 34555566789999
Q ss_pred EEeCCC--------CCCHHHHHHHHHHHHhcCC
Q psy17999 110 IISTGM--------LPSIEHVDNIYTTVKQYHS 134 (335)
Q Consensus 110 ilStG~--------~~tl~Ei~~Av~~i~~g~~ 134 (335)
|+.|=| .||-+|+-..++.+..|..
T Consensus 281 I~ATqmLeSM~~~p~PTRAEvsDVaNav~DG~D 313 (590)
T PRK06354 281 ITATQMLDSMQRNPRPTRAEASDVANAILDGTD 313 (590)
T ss_pred EEEchhHHHHhhCCCCCchhhHHHHHHhhhCCc
Confidence 998865 3788999999999887654
No 352
>PRK09206 pyruvate kinase; Provisional
Probab=75.38 E-value=15 Score=38.21 Aligned_cols=87 Identities=14% Similarity=0.163 Sum_probs=65.3
Q ss_pred CHHHHHHHHHHHHHcC---CceEeccCChhhHHHHH---hCCCCEEEEcCCCCCC-----------HHHHHHHHhcCCcE
Q psy17999 47 SQEEYVMLQQCADQVD---IMFTASAMDQVSFDFLL---SANVPFIKIGSGDSNN-----------IPLIKYAASKQKPL 109 (335)
Q Consensus 47 ~~e~~~~L~~~~~~~G---i~f~stpfd~~svd~l~---~l~v~~~KIaS~d~~n-----------~~LL~~~a~~gkPv 109 (335)
+.++..++.+|.++.| +.+++-.-+.++++-+. +. +|.+-||-+||.- -.+++.+.+.|||+
T Consensus 196 ~~~Dv~~~r~~l~~~~~~~~~iiaKIEt~eav~nldeIl~~-~DgImVaRGDLgvelg~e~vp~~qk~ii~~~~~~gkpv 274 (470)
T PRK09206 196 KRSDVLEIREHLKAHGGENIQIISKIENQEGLNNFDEILEA-SDGIMVARGDLGVEIPVEEVIFAQKMMIEKCNRARKVV 274 (470)
T ss_pred CHHHHHHHHHHHHHcCCCCceEEEEECCHHHHHhHHHHHHh-CCEEEECcchhhhhcCHHHHHHHHHHHHHHHHHcCCCE
Confidence 5567888888887764 66777777777765544 44 8999999998863 23445556789999
Q ss_pred EEeCCC--------CCCHHHHHHHHHHHHhcCC
Q psy17999 110 IISTGM--------LPSIEHVDNIYTTVKQYHS 134 (335)
Q Consensus 110 ilStG~--------~~tl~Ei~~Av~~i~~g~~ 134 (335)
|+.|=| .||-+|+-.+++.+..|..
T Consensus 275 I~ATqmLeSM~~np~PTRAEvsDVanav~dG~D 307 (470)
T PRK09206 275 ITATQMLDSMIKNPRPTRAEAGDVANAILDGTD 307 (470)
T ss_pred EEEchhHHHHhhCCCCCchhhHHHHHHhhhCCc
Confidence 998865 3789999999999887654
No 353
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=75.34 E-value=22 Score=35.89 Aligned_cols=80 Identities=11% Similarity=0.126 Sum_probs=61.1
Q ss_pred cCCHHHHHHHHHHHHHcCCceEe-ccCChhhHHHHHhCCCCEEEEcCCCCCC-------HHHHHHHHh---cCCcEEEeC
Q psy17999 45 EFSQEEYVMLQQCADQVDIMFTA-SAMDQVSFDFLLSANVPFIKIGSGDSNN-------IPLIKYAAS---KQKPLIIST 113 (335)
Q Consensus 45 el~~e~~~~L~~~~~~~Gi~f~s-tpfd~~svd~l~~l~v~~~KIaS~d~~n-------~~LL~~~a~---~gkPvilSt 113 (335)
.++++++.+|++. .+++++. .+.+.+.+..+.++|++.|-|+...-.+ ..+|.++.+ ...|||++-
T Consensus 210 ~~tW~di~wlr~~---~~~PiivKgV~~~~dA~~a~~~Gvd~I~VsnhGGrqld~~~~t~~~L~ei~~av~~~~~vi~dG 286 (367)
T PLN02493 210 TLSWKDVQWLQTI---TKLPILVKGVLTGEDARIAIQAGAAGIIVSNHGARQLDYVPATISALEEVVKATQGRIPVFLDG 286 (367)
T ss_pred CCCHHHHHHHHhc---cCCCEEeecCCCHHHHHHHHHcCCCEEEECCCCCCCCCCchhHHHHHHHHHHHhCCCCeEEEeC
Confidence 4788888888874 4555544 5578999999999999999998765554 456665644 258999999
Q ss_pred CCCCCHHHHHHHHHH
Q psy17999 114 GMLPSIEHVDNIYTT 128 (335)
Q Consensus 114 G~~~tl~Ei~~Av~~ 128 (335)
|.. +=.+|.+|+..
T Consensus 287 GIr-~G~Dv~KALAL 300 (367)
T PLN02493 287 GVR-RGTDVFKALAL 300 (367)
T ss_pred CcC-cHHHHHHHHHc
Confidence 999 89999888653
No 354
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=75.28 E-value=75 Score=31.69 Aligned_cols=78 Identities=18% Similarity=0.203 Sum_probs=50.5
Q ss_pred HHHHHHHcCCceEeccCChhhHHHHHhCCCCEEEEcCCC------------CCCHHHHHHH---Hh-cCCcEEE-e--CC
Q psy17999 54 LQQCADQVDIMFTASAMDQVSFDFLLSANVPFIKIGSGD------------SNNIPLIKYA---AS-KQKPLII-S--TG 114 (335)
Q Consensus 54 L~~~~~~~Gi~f~stpfd~~svd~l~~l~v~~~KIaS~d------------~~n~~LL~~~---a~-~gkPvil-S--tG 114 (335)
|.+.-++-.-..+.|.||-.++..+++.|+|++-|++.- ++=-.++.++ .+ ...|+++ . .|
T Consensus 27 l~~~k~~g~kivmlTAyD~~sA~i~d~aGvD~ILVGDSlgmv~lG~~~T~~Vtld~mi~H~~aV~Rga~~a~vVaDmPfg 106 (332)
T PLN02424 27 LRQKYRRGEPITMVTAYDYPSAVHVDSAGIDVCLVGDSAAMVVHGHDTTLPITLDEMLVHCRAVARGANRPLLVGDLPFG 106 (332)
T ss_pred HHHHHhCCCcEEEEecCCHHHHHHHHHcCCCEEEECCcHHHHhcCCCCCCCcCHHHHHHHHHHHhccCCCCEEEeCCCCC
Confidence 334333445688999999999999999999999999874 2223344443 33 4678887 2 33
Q ss_pred -CCCCHHHH-HHHHHHHHh
Q psy17999 115 -MLPSIEHV-DNIYTTVKQ 131 (335)
Q Consensus 115 -~~~tl~Ei-~~Av~~i~~ 131 (335)
...+.++. ++|..++++
T Consensus 107 SY~~s~e~av~nA~rl~~e 125 (332)
T PLN02424 107 SYESSTDQAVESAVRMLKE 125 (332)
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 11255554 445555565
No 355
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=75.00 E-value=67 Score=31.78 Aligned_cols=74 Identities=8% Similarity=0.066 Sum_probs=53.7
Q ss_pred CCHHHHHHHHHHHHH-cCC----ceEe--cc--CChhhHHHHHhCCCCEEEEcCCCCCCHHHHHHHHhcCCcEEEeCCCC
Q psy17999 46 FSQEEYVMLQQCADQ-VDI----MFTA--SA--MDQVSFDFLLSANVPFIKIGSGDSNNIPLIKYAASKQKPLIISTGML 116 (335)
Q Consensus 46 l~~e~~~~L~~~~~~-~Gi----~f~s--tp--fd~~svd~l~~l~v~~~KIaS~d~~n~~LL~~~a~~gkPvilStG~~ 116 (335)
|+.+++.+|.+.+++ .++ .|.+ .| ++.+.++.+.++|+..+-||=-. .|...|+.+.+. .
T Consensus 73 l~~~~l~~ll~~i~~~~~~~~~~e~t~e~~p~~i~~e~l~~l~~~G~~rvslGvQS-~~~~~L~~l~R~----------~ 141 (375)
T PRK05628 73 LGAEGLARVLDAVRDTFGLAPGAEVTTEANPESTSPEFFAALRAAGFTRVSLGMQS-AAPHVLAVLDRT----------H 141 (375)
T ss_pred CCHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCCCCHHHHHHHHHcCCCEEEEeccc-CCHHHHHHcCCC----------C
Confidence 677899999988876 343 2332 34 56677888888999988888544 445777777652 3
Q ss_pred CCHHHHHHHHHHHHh
Q psy17999 117 PSIEHVDNIYTTVKQ 131 (335)
Q Consensus 117 ~tl~Ei~~Av~~i~~ 131 (335)
+.+++.+|++.+++
T Consensus 142 -s~~~~~~a~~~l~~ 155 (375)
T PRK05628 142 -TPGRAVAAAREARA 155 (375)
T ss_pred -CHHHHHHHHHHHHH
Confidence 78899999988876
No 356
>PRK06801 hypothetical protein; Provisional
Probab=74.97 E-value=25 Score=34.16 Aligned_cols=76 Identities=12% Similarity=0.153 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHcCCce-----------------------EeccCChhhHHHHHhCCCCEEEE----------cCCCCCC
Q psy17999 49 EEYVMLQQCADQVDIMF-----------------------TASAMDQVSFDFLLSANVPFIKI----------GSGDSNN 95 (335)
Q Consensus 49 e~~~~L~~~~~~~Gi~f-----------------------~stpfd~~svd~l~~l~v~~~KI----------aS~d~~n 95 (335)
+.-+++.++|+.+|+.+ .++| ++..+|.++.|+|++.| +...+ +
T Consensus 115 ~~t~~v~~~a~~~gv~VE~ElG~vgg~e~~v~~~~~~~~~~T~p--e~a~~f~~~tgvD~LAvaiGt~Hg~y~~~~~l-~ 191 (286)
T PRK06801 115 RQTREVVKMCHAVGVSVEAELGAVGGDEGGALYGEADSAKFTDP--QLARDFVDRTGIDALAVAIGNAHGKYKGEPKL-D 191 (286)
T ss_pred HHHHHHHHHHHHcCCeEEeecCcccCCCCCcccCCcccccCCCH--HHHHHHHHHHCcCEEEeccCCCCCCCCCCCCC-C
Q ss_pred HHHHHHHHhc-CCcEEEeCCCCCCHHHHHHHHH
Q psy17999 96 IPLIKYAASK-QKPLIISTGMLPSIEHVDNIYT 127 (335)
Q Consensus 96 ~~LL~~~a~~-gkPvilStG~~~tl~Ei~~Av~ 127 (335)
+.+|+++.+. +.|+++-=|.+.+.+++.++++
T Consensus 192 ~e~l~~i~~~~~~PLVlHGGSgi~~e~~~~~i~ 224 (286)
T PRK06801 192 FARLAAIHQQTGLPLVLHGGSGISDADFRRAIE 224 (286)
T ss_pred HHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHH
No 357
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=74.90 E-value=75 Score=29.86 Aligned_cols=151 Identities=19% Similarity=0.203 Sum_probs=92.9
Q ss_pred hcCCHHHHHHHHHHHHHc---CCceEeccCC---hhhHH---HHHhCCCCEEEEcCCCC---CCHHHHHH---HHh-cCC
Q psy17999 44 LEFSQEEYVMLQQCADQV---DIMFTASAMD---QVSFD---FLLSANVPFIKIGSGDS---NNIPLIKY---AAS-KQK 107 (335)
Q Consensus 44 ~el~~e~~~~L~~~~~~~---Gi~f~stpfd---~~svd---~l~~l~v~~~KIaS~d~---~n~~LL~~---~a~-~gk 107 (335)
..|+.++..++.+.+.+. .+++++.+-. .++++ .++++|+|.+-+...-. ++-.++++ +++ +++
T Consensus 45 ~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~Gad~v~v~pP~y~~~~~~~~~~~~~~ia~~~~~ 124 (281)
T cd00408 45 PTLTDEERKEVIEAVVEAVAGRVPVIAGVGANSTREAIELARHAEEAGADGVLVVPPYYNKPSQEGIVAHFKAVADASDL 124 (281)
T ss_pred ccCCHHHHHHHHHHHHHHhCCCCeEEEecCCccHHHHHHHHHHHHHcCCCEEEECCCcCCCCCHHHHHHHHHHHHhcCCC
Confidence 458989988888776653 3666665543 23444 55678999988877543 34455554 444 689
Q ss_pred cEEE-----eCCCCCCHHHHHHHHHHHHhcCCCCceeecccCCCCCCCCcccccCceEEeeecCCCCCCccCCCchHHHH
Q psy17999 108 PLII-----STGMLPSIEHVDNIYTTVKQYHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYPTPYHDINLNVIHT 182 (335)
Q Consensus 108 Pvil-----StG~~~tl~Ei~~Av~~i~~g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~s~YP~~~~~~nL~~i~~ 182 (335)
||+| .||..++.+.+.+.++ .+ +++-+-.+ ..|+..+..
T Consensus 125 pi~iYn~P~~tg~~l~~~~~~~L~~-----~~-----------------------~v~giK~s--------~~d~~~~~~ 168 (281)
T cd00408 125 PVILYNIPGRTGVDLSPETIARLAE-----HP-----------------------NIVGIKDS--------SGDLDRLTR 168 (281)
T ss_pred CEEEEECccccCCCCCHHHHHHHhc-----CC-----------------------CEEEEEeC--------CCCHHHHHH
Confidence 9998 6787778888876543 22 44444433 257777777
Q ss_pred HHHHCC-CCCeecCCCCCChHHHHHHHHcCCc-EEEeccCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q psy17999 183 LRSRYP-DIPIGYSGHENGVHVCYAAVAMGAQ-IIEKHFTLDKSWKGSDHASSLTPPELKALVTGIR 247 (335)
Q Consensus 183 L~~~fp-~~pVG~SdHt~g~~~~~aAvalGA~-vIEkH~tld~~~~G~Dh~~Sl~p~el~~lv~~ir 247 (335)
+++..+ ++.| |.++ ......++.+|++ +|= -...+-|+.+.++.+.++
T Consensus 169 ~~~~~~~~~~v-~~G~---d~~~~~~l~~G~~G~i~-------------~~~n~~p~~~~~~~~~~~ 218 (281)
T cd00408 169 LIALLGPDFAV-LSGD---DDLLLPALALGADGAIS-------------GAANVAPKLAVALYEAAR 218 (281)
T ss_pred HHHhcCCCeEE-EEcc---hHHHHHHHHcCCCEEEe-------------hHHhhCHHHHHHHHHHHH
Confidence 877663 3333 4444 2334456788885 331 113455777777776554
No 358
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=74.58 E-value=32 Score=32.16 Aligned_cols=113 Identities=13% Similarity=0.069 Sum_probs=85.0
Q ss_pred CCHHHHHHHHHHHHHcCCceEeccCChhhHHHHHhCCCCEEEEcCCCCC-CHHHHHHHHhc-CCcEEEeCCCCCCHHHHH
Q psy17999 46 FSQEEYVMLQQCADQVDIMFTASAMDQVSFDFLLSANVPFIKIGSGDSN-NIPLIKYAASK-QKPLIISTGMLPSIEHVD 123 (335)
Q Consensus 46 l~~e~~~~L~~~~~~~Gi~f~stpfd~~svd~l~~l~v~~~KIaS~d~~-n~~LL~~~a~~-gkPvilStG~~~tl~Ei~ 123 (335)
.|..-..++.++|..+|+.++--++++.-+-.+.++|.+.+|+=..+.. -..+++.++.- .---++-||+- +++
T Consensus 90 VsP~~~~ev~~~a~~~~ip~~PG~~TptEi~~Ale~G~~~lK~FPa~~~Gg~~~~ka~~gP~~~v~~~pTGGV-s~~--- 165 (211)
T COG0800 90 VSPGLNPEVAKAANRYGIPYIPGVATPTEIMAALELGASALKFFPAEVVGGPAMLKALAGPFPQVRFCPTGGV-SLD--- 165 (211)
T ss_pred ECCCCCHHHHHHHHhCCCcccCCCCCHHHHHHHHHcChhheeecCccccCcHHHHHHHcCCCCCCeEeecCCC-CHH---
Confidence 5666688999999999999999999999999999999999999998888 88888888752 22357779988 777
Q ss_pred HHHHHHHhcCCCCceeecccCCCCCCCCcccccCceEEeeecCCCCCCc-cCCCchHHHHHHHHC
Q psy17999 124 NIYTTVKQYHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYPTPY-HDINLNVIHTLRSRY 187 (335)
Q Consensus 124 ~Av~~i~~g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~s~YP~~~-~~~nL~~i~~L~~~f 187 (335)
++-+++..+ +.|.- -...-||... .+=|+..|..+-+.+
T Consensus 166 N~~~yla~g------v~avG-------------------~Gs~l~~~~~~~~~~~~~i~~~a~~~ 205 (211)
T COG0800 166 NAADYLAAG------VVAVG-------------------LGSWLVPKDLIAAGDWDRITELAREA 205 (211)
T ss_pred HHHHHHhCC------ceEEe-------------------cCccccChhhhhcccHHHHHHHHHHH
Confidence 444566532 12222 2333567555 778898888876654
No 359
>PLN02979 glycolate oxidase
Probab=74.53 E-value=24 Score=35.65 Aligned_cols=79 Identities=11% Similarity=0.130 Sum_probs=59.9
Q ss_pred cCCHHHHHHHHHHHHHcCCceEe-ccCChhhHHHHHhCCCCEEEEcCCCCCC-------HHHHHHHHh---cCCcEEEeC
Q psy17999 45 EFSQEEYVMLQQCADQVDIMFTA-SAMDQVSFDFLLSANVPFIKIGSGDSNN-------IPLIKYAAS---KQKPLIIST 113 (335)
Q Consensus 45 el~~e~~~~L~~~~~~~Gi~f~s-tpfd~~svd~l~~l~v~~~KIaS~d~~n-------~~LL~~~a~---~gkPvilSt 113 (335)
.++++++.+|++ ..+++++. .+.+.+++..+.++|+|.|-|+...-.+ ...|.++++ ...|||++-
T Consensus 209 ~ltW~dl~wlr~---~~~~PvivKgV~~~~dA~~a~~~Gvd~I~VsnhGGrqld~~p~t~~~L~ei~~~~~~~~~Vi~dG 285 (366)
T PLN02979 209 TLSWKDVQWLQT---ITKLPILVKGVLTGEDARIAIQAGAAGIIVSNHGARQLDYVPATISALEEVVKATQGRIPVFLDG 285 (366)
T ss_pred CCCHHHHHHHHh---ccCCCEEeecCCCHHHHHHHHhcCCCEEEECCCCcCCCCCchhHHHHHHHHHHHhCCCCeEEEeC
Confidence 377788777776 45666654 5678999999999999999987664444 446666644 248999999
Q ss_pred CCCCCHHHHHHHHH
Q psy17999 114 GMLPSIEHVDNIYT 127 (335)
Q Consensus 114 G~~~tl~Ei~~Av~ 127 (335)
|.. +-.+|.+|+.
T Consensus 286 GIr-~G~Di~KALA 298 (366)
T PLN02979 286 GVR-RGTDVFKALA 298 (366)
T ss_pred CcC-cHHHHHHHHH
Confidence 999 8999988865
No 360
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=74.49 E-value=72 Score=32.77 Aligned_cols=45 Identities=11% Similarity=0.137 Sum_probs=31.4
Q ss_pred CCHHHHHHHHHHHHH-------cCCceEeccCC----hhhHHHHHhCCCCEEEEcC
Q psy17999 46 FSQEEYVMLQQCADQ-------VDIMFTASAMD----QVSFDFLLSANVPFIKIGS 90 (335)
Q Consensus 46 l~~e~~~~L~~~~~~-------~Gi~f~stpfd----~~svd~l~~l~v~~~KIaS 90 (335)
++.+++++-.+.+++ +|+.++.+|.+ .+.++.+.+.+|+++-.+.
T Consensus 48 l~~e~l~~~I~~ir~~lt~~~PfGVNL~~~~~~~~~e~~~v~l~le~gV~~ve~sa 103 (418)
T cd04742 48 LPLDEVEQAIERIQAALGNGEPYGVNLIHSPDEPELEEGLVDLFLRHGVRVVEASA 103 (418)
T ss_pred CCHHHHHHHHHHHHHhccCCCCeEEeeecCCCCchhHHHHHHHHHHcCCCEEEecc
Confidence 677777666666655 66777776653 3458888899999876544
No 361
>cd01292 metallo-dependent_hydrolases Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The family includes urease alpha, adenosine deaminase, phosphotriesterase dihydroorotases, allantoinases, hydantoinases, AMP-, adenine and cytosine deaminases, imidazolonepropionase, aryldialkylphosphatase, chlorohydrolases, formylmethanofuran dehydrogenases and others.
Probab=74.48 E-value=62 Score=28.69 Aligned_cols=130 Identities=12% Similarity=0.175 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHc-CCceEe--ccCCh----------hhHHHHHhC---CCCEEEEcCCCCC---CHHHHHH----HHhc
Q psy17999 49 EEYVMLQQCADQV-DIMFTA--SAMDQ----------VSFDFLLSA---NVPFIKIGSGDSN---NIPLIKY----AASK 105 (335)
Q Consensus 49 e~~~~L~~~~~~~-Gi~f~s--tpfd~----------~svd~l~~l---~v~~~KIaS~d~~---n~~LL~~----~a~~ 105 (335)
+....+.+.+++. |+.... ...+. ...+++... ++..+++.+.... +.+.++. +.+.
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~a~~~ 145 (275)
T cd01292 66 AAIEAVAEAARASAGIRVVLGLGIPGVPAAVDEDAEALLLELLRRGLELGAVGLKLAGPYTATGLSDESLRRVLEEARKL 145 (275)
T ss_pred hHHHHHHHHHHHhcCeeeEEeccCCCCccccchhHHHHHHHHHHHHHhcCCeeEeeCCCCCCCCCCcHHHHHHHHHHHHc
Confidence 5678888999988 766653 23331 223445443 6888999877654 4444444 4556
Q ss_pred CCcEEEeCCCCCCH--HHHHHHHHHHHhcCCCCceeecccCCCCCCCCcccccCceEEeeecCCCCCCccCCCchHHHHH
Q psy17999 106 QKPLIISTGMLPSI--EHVDNIYTTVKQYHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYPTPYHDINLNVIHTL 183 (335)
Q Consensus 106 gkPvilStG~~~tl--~Ei~~Av~~i~~g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~s~YP~~~~~~nL~~i~~L 183 (335)
+.||.+-++.. .. ..+...++.... .. .+.+-||... +-..+..+
T Consensus 146 ~~~i~~H~~~~-~~~~~~~~~~~~~~~~-~~-----------------------~~~~~H~~~~--------~~~~~~~~ 192 (275)
T cd01292 146 GLPVVIHAGEL-PDPTRALEDLVALLRL-GG-----------------------RVVIGHVSHL--------DPELLELL 192 (275)
T ss_pred CCeEEEeeCCc-ccCccCHHHHHHHHhc-CC-----------------------CEEEECCccC--------CHHHHHHH
Confidence 99999998876 43 234444444332 22 7899999864 45566777
Q ss_pred HHHCCCCCeecCCCCC--------ChHHHHHHHHcCCc
Q psy17999 184 RSRYPDIPIGYSGHEN--------GVHVCYAAVAMGAQ 213 (335)
Q Consensus 184 ~~~fp~~pVG~SdHt~--------g~~~~~aAvalGA~ 213 (335)
+++ ++.+..+-++. +......++..|..
T Consensus 193 ~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 228 (275)
T cd01292 193 KEA--GVSLEVCPLSNYLLGRDGEGAEALRRLLELGIR 228 (275)
T ss_pred HHc--CCeEEECCcccccccCCcCCcccHHHHHHCCCc
Confidence 753 67776554332 23334556677743
No 362
>PLN02535 glycolate oxidase
Probab=74.24 E-value=26 Score=35.28 Aligned_cols=79 Identities=10% Similarity=0.122 Sum_probs=57.6
Q ss_pred cCCHHHHHHHHHHHHHcCCceEec-cCChhhHHHHHhCCCCEEEEcCCC-------CCCHHHHHHHHh---cCCcEEEeC
Q psy17999 45 EFSQEEYVMLQQCADQVDIMFTAS-AMDQVSFDFLLSANVPFIKIGSGD-------SNNIPLIKYAAS---KQKPLIIST 113 (335)
Q Consensus 45 el~~e~~~~L~~~~~~~Gi~f~st-pfd~~svd~l~~l~v~~~KIaS~d-------~~n~~LL~~~a~---~gkPvilSt 113 (335)
.++++.+++|++ ..+++++.- +.+.+.+..+.++|+|++-+.... ..-...|.++.+ ...|||.+-
T Consensus 209 ~~tW~~i~~lr~---~~~~PvivKgV~~~~dA~~a~~~GvD~I~vsn~GGr~~d~~~~t~~~L~ev~~av~~~ipVi~dG 285 (364)
T PLN02535 209 SLSWKDIEWLRS---ITNLPILIKGVLTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISVLEEVVQAVGGRVPVLLDG 285 (364)
T ss_pred CCCHHHHHHHHh---ccCCCEEEecCCCHHHHHHHHhcCCCEEEEeCCCcCCCCCChHHHHHHHHHHHHHhcCCCEEeeC
Confidence 366777666666 456776554 789999999999999999885221 112456666654 268999999
Q ss_pred CCCCCHHHHHHHHH
Q psy17999 114 GMLPSIEHVDNIYT 127 (335)
Q Consensus 114 G~~~tl~Ei~~Av~ 127 (335)
|.. +-.+|.+|+.
T Consensus 286 GIr-~g~Dv~KALa 298 (364)
T PLN02535 286 GVR-RGTDVFKALA 298 (364)
T ss_pred CCC-CHHHHHHHHH
Confidence 999 9999988865
No 363
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=74.22 E-value=35 Score=34.18 Aligned_cols=36 Identities=25% Similarity=0.330 Sum_probs=22.0
Q ss_pred HHHHHHHcCCcEEEeccCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q psy17999 203 VCYAAVAMGAQIIEKHFTLDKSWKGSDHASSLTPPELKALVTGIRD 248 (335)
Q Consensus 203 ~~~aAvalGA~vIEkH~tld~~~~G~Dh~~Sl~p~el~~lv~~ir~ 248 (335)
+..++..+||+.|- + .|-.-.++|.++.++++.+++
T Consensus 150 ~~~~~~~~Ga~~I~----l------~DT~G~~~P~~v~~lv~~l~~ 185 (378)
T PRK11858 150 FAKAAEEAGADRVR----F------CDTVGILDPFTMYELVKELVE 185 (378)
T ss_pred HHHHHHhCCCCEEE----E------eccCCCCCHHHHHHHHHHHHH
Confidence 34456667776543 2 155556777777777777765
No 364
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=74.21 E-value=21 Score=34.63 Aligned_cols=81 Identities=15% Similarity=0.163 Sum_probs=62.8
Q ss_pred HHHHHHHHcCCceEeccCChhhHHHHHhCCCCEEEEcCC---------C---CCCHHHHHHHHh----cCCcEEEe--CC
Q psy17999 53 MLQQCADQVDIMFTASAMDQVSFDFLLSANVPFIKIGSG---------D---SNNIPLIKYAAS----KQKPLIIS--TG 114 (335)
Q Consensus 53 ~L~~~~~~~Gi~f~stpfd~~svd~l~~l~v~~~KIaS~---------d---~~n~~LL~~~a~----~gkPvilS--tG 114 (335)
.|++.-++.+..++-.+||.-|+..+++.|.+++.++|. | ++--+++..+.+ +++|||.. ||
T Consensus 4 ~lr~l~~~~~~l~~p~~~Da~SAri~e~aGf~Ai~~sg~~~a~~lG~pD~g~lt~~e~~~~~~~I~~~~~iPviaD~d~G 83 (285)
T TIGR02317 4 AFRAALAKEDILQIPGAINAMAALLAERAGFEAIYLSGAAVAASLGLPDLGITTLDEVAEDARRITRVTDLPLLVDADTG 83 (285)
T ss_pred HHHHHHhCCCcEEeCCCCCHHHHHHHHHcCCCEEEEcHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCCEEEECCCC
Confidence 355666777899999999999999999999999998775 3 333444544432 58999986 88
Q ss_pred CCCCHHHHHHHHHHHHh-cCC
Q psy17999 115 MLPSIEHVDNIYTTVKQ-YHS 134 (335)
Q Consensus 115 ~~~tl~Ei~~Av~~i~~-g~~ 134 (335)
-+ +..++...|+.+.+ |-.
T Consensus 84 yG-~~~~v~~tv~~~~~aG~a 103 (285)
T TIGR02317 84 FG-EAFNVARTVREMEDAGAA 103 (285)
T ss_pred CC-CHHHHHHHHHHHHHcCCe
Confidence 88 89999888888877 654
No 365
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=74.19 E-value=51 Score=29.58 Aligned_cols=81 Identities=12% Similarity=0.018 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHcCCceEeccC--Chhh----HHHHHhCCCCEEEEcCCCCCCHHHHHHHHhcCCcEEEe-CC-------
Q psy17999 49 EEYVMLQQCADQVDIMFTASAM--DQVS----FDFLLSANVPFIKIGSGDSNNIPLIKYAASKQKPLIIS-TG------- 114 (335)
Q Consensus 49 e~~~~L~~~~~~~Gi~f~stpf--d~~s----vd~l~~l~v~~~KIaS~d~~n~~LL~~~a~~gkPvilS-tG------- 114 (335)
+-+..+.+.+++.|..++.... |++. ++.+.+.++|.+-|.+... +.+.++.+.+.+.|+|+= +.
T Consensus 16 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~-~~~~~~~l~~~~ipvV~~~~~~~~~~~~ 94 (268)
T cd06298 16 ELARGIDDIATMYKYNIILSNSDNDKEKELKVLNNLLAKQVDGIIFMGGKI-SEEHREEFKRSPTPVVLAGSVDEDNELP 94 (268)
T ss_pred HHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHHHHhcCCEEEEeCCCC-cHHHHHHHhcCCCCEEEEccccCCCCCC
Confidence 3455677888888888665443 3332 3445566899998876543 467888888889998863 21
Q ss_pred ---CCCCHHHHHHHHHHHHh
Q psy17999 115 ---MLPSIEHVDNIYTTVKQ 131 (335)
Q Consensus 115 ---~~~tl~Ei~~Av~~i~~ 131 (335)
.. ..+-...+++++.+
T Consensus 95 ~v~~d-~~~~~~~~~~~l~~ 113 (268)
T cd06298 95 SVNID-YKKAAFEATELLIK 113 (268)
T ss_pred EEEEC-cHHHHHHHHHHHHH
Confidence 11 23444556777765
No 366
>PLN03231 putative alpha-galactosidase; Provisional
Probab=74.19 E-value=8.5 Score=38.61 Aligned_cols=39 Identities=26% Similarity=0.290 Sum_probs=27.8
Q ss_pred HHHHHhCCCCEEEEcCCCCCC------H-HHHHHHHhcCCcEEEeC
Q psy17999 75 FDFLLSANVPFIKIGSGDSNN------I-PLIKYAASKQKPLIIST 113 (335)
Q Consensus 75 vd~l~~l~v~~~KIaS~d~~n------~-~LL~~~a~~gkPvilSt 113 (335)
++...+-|||++|+--+.... + .+=+++.++|+||++|.
T Consensus 169 a~~fA~WGVDylK~D~c~~~~~~~~~~y~~m~~AL~~tGRpIv~Sl 214 (357)
T PLN03231 169 YDQYASWGIDFIKHDCVFGAENPQLDEILTVSKAIRNSGRPMIYSL 214 (357)
T ss_pred HHHHHHhCCCEEeecccCCCCcccHHHHHHHHHHHHHhCCCeEEEe
Confidence 567788999999997442211 2 24456778999999996
No 367
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=74.05 E-value=23 Score=34.30 Aligned_cols=52 Identities=13% Similarity=0.145 Sum_probs=39.9
Q ss_pred HHHHHhCCCCEEEEcCCC-------CCCHHHHHHHHh-cCCcEEEeCCCCCCHHHHHHHHH
Q psy17999 75 FDFLLSANVPFIKIGSGD-------SNNIPLIKYAAS-KQKPLIISTGMLPSIEHVDNIYT 127 (335)
Q Consensus 75 vd~l~~l~v~~~KIaS~d-------~~n~~LL~~~a~-~gkPvilStG~~~tl~Ei~~Av~ 127 (335)
+..+++.|++++=|..+. -.+++.++++.+ .+.|||.+-|.. |.+++.++++
T Consensus 153 a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~-~~~da~~~l~ 212 (319)
T TIGR00737 153 ARIAEDAGAQAVTLHGRTRAQGYSGEANWDIIARVKQAVRIPVIGNGDIF-SPEDAKAMLE 212 (319)
T ss_pred HHHHHHhCCCEEEEEcccccccCCCchhHHHHHHHHHcCCCcEEEeCCCC-CHHHHHHHHH
Confidence 455677899999886542 236888888877 489999999999 9988887764
No 368
>PRK04302 triosephosphate isomerase; Provisional
Probab=74.03 E-value=32 Score=31.61 Aligned_cols=80 Identities=5% Similarity=0.065 Sum_probs=58.6
Q ss_pred CCHHHHHHHHHHHHHcCCceEeccCChhhHHHHHhCCCCEEEEcCCCC-----C----C----HHHHHHHHh--cCCcEE
Q psy17999 46 FSQEEYVMLQQCADQVDIMFTASAMDQVSFDFLLSANVPFIKIGSGDS-----N----N----IPLIKYAAS--KQKPLI 110 (335)
Q Consensus 46 l~~e~~~~L~~~~~~~Gi~f~stpfd~~svd~l~~l~v~~~KIaS~d~-----~----n----~~LL~~~a~--~gkPvi 110 (335)
++.++..++.+.|+++|+..+..+-+.+.+..+.+.+.+++=+-+.++ . . ..+++.+.+ .+.||+
T Consensus 98 ~~~~e~~~~v~~a~~~Gl~~I~~v~~~~~~~~~~~~~~~~I~~~p~~~igt~~~~~~~~~~~i~~~~~~ir~~~~~~pvi 177 (223)
T PRK04302 98 LTLADIEAVVERAKKLGLESVVCVNNPETSAAAAALGPDYVAVEPPELIGTGIPVSKAKPEVVEDAVEAVKKVNPDVKVL 177 (223)
T ss_pred cCHHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHhcCCCCEEEEeCccccccCCCCCcCCHHHHHHHHHHHHhccCCCEEE
Confidence 677889999999999999999888888888888888888876544211 0 1 122233443 268999
Q ss_pred EeCCCCCCHHHHHHHH
Q psy17999 111 ISTGMLPSIEHVDNIY 126 (335)
Q Consensus 111 lStG~~~tl~Ei~~Av 126 (335)
.--|-+ +.+++..+.
T Consensus 178 ~GggI~-~~e~~~~~~ 192 (223)
T PRK04302 178 CGAGIS-TGEDVKAAL 192 (223)
T ss_pred EECCCC-CHHHHHHHH
Confidence 988888 888888764
No 369
>cd00288 Pyruvate_Kinase Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low affinity T state. PK exists as several different isozymes, depending on organism and tissue type. In mammals, there are four PK isozymes: R, found in red blood cells, L, found in liver, M1, found in skeletal muscle, and M2, found in kidney, adipose tissue, and lung. PK forms a homotetramer, with each subunit containing three domains. The T state to R state transition of PK is more complex than in most allosteric enzymes, involving a concerted rotation of all 3 domains of each monomer in the homotetramer.
Probab=74.03 E-value=15 Score=38.33 Aligned_cols=87 Identities=20% Similarity=0.197 Sum_probs=65.9
Q ss_pred CHHHHHHHHHHHHHcC--CceEeccCChhhHHHHH---hCCCCEEEEcCCCCCC-----------HHHHHHHHhcCCcEE
Q psy17999 47 SQEEYVMLQQCADQVD--IMFTASAMDQVSFDFLL---SANVPFIKIGSGDSNN-----------IPLIKYAASKQKPLI 110 (335)
Q Consensus 47 ~~e~~~~L~~~~~~~G--i~f~stpfd~~svd~l~---~l~v~~~KIaS~d~~n-----------~~LL~~~a~~gkPvi 110 (335)
+.++...+++|.++.| +.+++-.-+.++++-++ +. +|.+-||-+||.- -.+++.+-+.|||+|
T Consensus 198 ~~~di~~~r~~l~~~~~~~~iiakIEt~~av~nldeI~~~-~DgImIargDLg~e~g~~~v~~~qk~ii~~~~~~gkpvi 276 (480)
T cd00288 198 KASDVLEIREVLGEKGKDIKIIAKIENQEGVNNFDEILEA-SDGIMVARGDLGVEIPAEEVFLAQKMLIAKCNLAGKPVI 276 (480)
T ss_pred CHHHHHHHHHHHHhcCCCceEEEEECCHHHHHhHHHHHHh-cCEEEECcchhhhhcChHHHHHHHHHHHHHHHHcCCCEE
Confidence 5688888999988764 66777777777765554 45 8999999998753 234444556799999
Q ss_pred EeCCC--------CCCHHHHHHHHHHHHhcCC
Q psy17999 111 ISTGM--------LPSIEHVDNIYTTVKQYHS 134 (335)
Q Consensus 111 lStG~--------~~tl~Ei~~Av~~i~~g~~ 134 (335)
+.|=| .||-+|+-..++.+..|..
T Consensus 277 ~ATqmLeSM~~~p~PTRAEvtDVanav~dG~D 308 (480)
T cd00288 277 TATQMLESMIYNPRPTRAEVSDVANAVLDGTD 308 (480)
T ss_pred EEchhHHHHhhCCCCCchhhHHHHHHHHhCCc
Confidence 98764 3789999999999887654
No 370
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=73.88 E-value=32 Score=32.19 Aligned_cols=79 Identities=13% Similarity=0.220 Sum_probs=56.1
Q ss_pred CHHHHHHHHHHHHHcCCceEe--cc-CC---hhhHHHHHhCCCCEEEEcCCC---CCCHHHHHHHHhcCCcEEEeCCCCC
Q psy17999 47 SQEEYVMLQQCADQVDIMFTA--SA-MD---QVSFDFLLSANVPFIKIGSGD---SNNIPLIKYAASKQKPLIISTGMLP 117 (335)
Q Consensus 47 ~~e~~~~L~~~~~~~Gi~f~s--tp-fd---~~svd~l~~l~v~~~KIaS~d---~~n~~LL~~~a~~gkPvilStG~~~ 117 (335)
..+.+.++.+..++.+++++. .+ ++ .+-+..+++.|++++-+.++. -.|+.+++++. .+.|||-.-|..
T Consensus 124 ~p~~l~eiv~avr~~~~pVsvKir~g~~~~~~~la~~l~~aG~d~ihv~~~~~g~~ad~~~I~~i~-~~ipVIgnGgI~- 201 (233)
T cd02911 124 DPERLSEFIKALKETGVPVSVKIRAGVDVDDEELARLIEKAGADIIHVDAMDPGNHADLKKIRDIS-TELFIIGNNSVT- 201 (233)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEEcCCcCcCHHHHHHHHHHhCCCEEEECcCCCCCCCcHHHHHHhc-CCCEEEEECCcC-
Confidence 346667777777777888776 32 22 333456778999998776654 34789999887 789999888888
Q ss_pred CHHHHHHHHH
Q psy17999 118 SIEHVDNIYT 127 (335)
Q Consensus 118 tl~Ei~~Av~ 127 (335)
|.++..+.++
T Consensus 202 s~eda~~~l~ 211 (233)
T cd02911 202 TIESAKEMFS 211 (233)
T ss_pred CHHHHHHHHH
Confidence 7777776554
No 371
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=73.82 E-value=98 Score=31.44 Aligned_cols=65 Identities=11% Similarity=-0.024 Sum_probs=31.7
Q ss_pred CeecCCCCCC--hHHHHHHHHcCCcEEEecc-CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCCC
Q psy17999 191 PIGYSGHENG--VHVCYAAVAMGAQIIEKHF-TLDKSWKGSDHASSLTPPELKALVTGIRDIEQSLGSP 256 (335)
Q Consensus 191 pVG~SdHt~g--~~~~~aAvalGA~vIEkH~-tld~~~~G~Dh~~Sl~p~el~~lv~~ir~~~~alG~~ 256 (335)
.+|+++.|.. ......+..+|..-|--+. ++....+ -.-...-+.++..+|.+.+++.-...|-.
T Consensus 199 I~GlP~qt~e~~~~~l~~~~~l~~~~is~y~L~~~~~T~-l~~~~~~~~~~~~~m~~~~~~~L~~~Gy~ 266 (430)
T PRK08208 199 IYGIPGQTHASWMESLDQALVYRPEELFLYPLYVRPLTG-LGRRARAWDDQRLSLYRLARDLLLEAGYT 266 (430)
T ss_pred ecCCCCCCHHHHHHHHHHHHhCCCCEEEEccccccCCCc-cchhcCCCHHHHHHHHHHHHHHHHHcCCe
Confidence 3466776654 2234456677876444332 1111110 00111123466677777777666665643
No 372
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=73.76 E-value=26 Score=33.80 Aligned_cols=83 Identities=20% Similarity=0.255 Sum_probs=60.2
Q ss_pred cCCHHHHHHHHHHHHHcCCc--eEeccCCh-hhHHHHHhCCCCEEEEcCC----CCCC------HHHHHHHHh-cCCcEE
Q psy17999 45 EFSQEEYVMLQQCADQVDIM--FTASAMDQ-VSFDFLLSANVPFIKIGSG----DSNN------IPLIKYAAS-KQKPLI 110 (335)
Q Consensus 45 el~~e~~~~L~~~~~~~Gi~--f~stpfd~-~svd~l~~l~v~~~KIaS~----d~~n------~~LL~~~a~-~gkPvi 110 (335)
.||.|+-..+.++|+++||. |+++|-.. +-++.+.+..-.|+=.-|. -..+ ..+++++-+ +++||.
T Consensus 130 DLP~ee~~~~~~~~~~~gi~~I~lvaPtt~~~rl~~i~~~a~GFiY~vs~~GvTG~~~~~~~~~~~~v~~vr~~~~~Pv~ 209 (265)
T COG0159 130 DLPPEESDELLKAAEKHGIDPIFLVAPTTPDERLKKIAEAASGFIYYVSRMGVTGARNPVSADVKELVKRVRKYTDVPVL 209 (265)
T ss_pred CCChHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCCcEEEEecccccCCCcccchhHHHHHHHHHHhcCCCeE
Confidence 38999999999999999985 56777544 6677777764444333332 1111 345555554 599999
Q ss_pred EeCCCCCCHHHHHHHHHH
Q psy17999 111 ISTGMLPSIEHVDNIYTT 128 (335)
Q Consensus 111 lStG~~~tl~Ei~~Av~~ 128 (335)
+--|-+ +.+++.++.++
T Consensus 210 vGFGIs-~~e~~~~v~~~ 226 (265)
T COG0159 210 VGFGIS-SPEQAAQVAEA 226 (265)
T ss_pred EecCcC-CHHHHHHHHHh
Confidence 999999 99999998886
No 373
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=73.57 E-value=20 Score=32.12 Aligned_cols=83 Identities=12% Similarity=0.145 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHcCCceEecc--CChhh----HHHHHhCCCCEEEEcCCCCCCHHHHHHHHhcCCcEEEe-CCC----C-
Q psy17999 49 EEYVMLQQCADQVDIMFTASA--MDQVS----FDFLLSANVPFIKIGSGDSNNIPLIKYAASKQKPLIIS-TGM----L- 116 (335)
Q Consensus 49 e~~~~L~~~~~~~Gi~f~stp--fd~~s----vd~l~~l~v~~~KIaS~d~~n~~LL~~~a~~gkPvilS-tG~----~- 116 (335)
+.+..+.+.++++|+.+.... +|... ++.+...++|.+-+.+.+..+.+.++.+.+.|.|+++- +.. .
T Consensus 16 ~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~~~~~~~~~~~~~ipvV~~~~~~~~~~~~ 95 (266)
T cd06282 16 ECVQGIQEEARAAGYSLLLATTDYDAEREADAVETLLRQRVDGLILTVADAATSPALDLLDAERVPYVLAYNDPQPGRPS 95 (266)
T ss_pred HHHHHHHHHHHHCCCEEEEeeCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCchHHHHHHhhCCCCEEEEeccCCCCCCE
Confidence 457788899999998876653 34332 33445567999999877765667888888889997643 221 0
Q ss_pred C---CHHHHHHHHHHHHh
Q psy17999 117 P---SIEHVDNIYTTVKQ 131 (335)
Q Consensus 117 ~---tl~Ei~~Av~~i~~ 131 (335)
. ..+-...+++++..
T Consensus 96 v~~d~~~~g~~~~~~l~~ 113 (266)
T cd06282 96 VSVDNRAAARDVAQALAA 113 (266)
T ss_pred EeeCcHHHHHHHHHHHHH
Confidence 0 23445556666665
No 374
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=73.51 E-value=19 Score=35.28 Aligned_cols=75 Identities=9% Similarity=0.042 Sum_probs=55.9
Q ss_pred HHHHHHHHHcCCceEeccCChhhHHHHHhCCCCEEEEcCC--------CC-CCHHHHHHHHh-cCCcEEEeCCCCCCHHH
Q psy17999 52 VMLQQCADQVDIMFTASAMDQVSFDFLLSANVPFIKIGSG--------DS-NNIPLIKYAAS-KQKPLIISTGMLPSIEH 121 (335)
Q Consensus 52 ~~L~~~~~~~Gi~f~stpfd~~svd~l~~l~v~~~KIaS~--------d~-~n~~LL~~~a~-~gkPvilStG~~~tl~E 121 (335)
.++.+.+++.|+.++.++-+.+.+..+.+.|+|++-+-.. +. .-+.|+.++.. ...|||..=|.+ +-..
T Consensus 126 ~~~i~~l~~~gi~v~~~v~s~~~A~~a~~~G~D~iv~qG~eAGGH~g~~~~~~~~L~~~v~~~~~iPViaAGGI~-dg~~ 204 (330)
T PF03060_consen 126 PEVIERLHAAGIKVIPQVTSVREARKAAKAGADAIVAQGPEAGGHRGFEVGSTFSLLPQVRDAVDIPVIAAGGIA-DGRG 204 (330)
T ss_dssp HHHHHHHHHTT-EEEEEESSHHHHHHHHHTT-SEEEEE-TTSSEE---SSG-HHHHHHHHHHH-SS-EEEESS---SHHH
T ss_pred HHHHHHHHHcCCccccccCCHHHHHHhhhcCCCEEEEeccccCCCCCccccceeeHHHHHhhhcCCcEEEecCcC-CHHH
Confidence 4566788899999999999999999999999999887654 33 25777777776 489999999999 9999
Q ss_pred HHHHHH
Q psy17999 122 VDNIYT 127 (335)
Q Consensus 122 i~~Av~ 127 (335)
+..|+.
T Consensus 205 iaaal~ 210 (330)
T PF03060_consen 205 IAAALA 210 (330)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 987754
No 375
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=73.48 E-value=44 Score=34.59 Aligned_cols=46 Identities=20% Similarity=0.153 Sum_probs=31.7
Q ss_pred CCHHHHHHHHHHHHH-------cCCceEeccCCh----hhHHHHHhCCCCEEEEcCC
Q psy17999 46 FSQEEYVMLQQCADQ-------VDIMFTASAMDQ----VSFDFLLSANVPFIKIGSG 91 (335)
Q Consensus 46 l~~e~~~~L~~~~~~-------~Gi~f~stpfd~----~svd~l~~l~v~~~KIaS~ 91 (335)
|+.+++++..+..++ +|+.++.++-++ +.++.+.+.+|+++-.+.+
T Consensus 53 l~~e~l~~~I~~ir~~~~~~p~fGVNL~~~~~~~~~e~~~v~l~l~~~V~~veasa~ 109 (444)
T TIGR02814 53 LPLEEVEQAIHRIQQALPGGPAYGVNLIHSPSDPALEWGLVDLLLRHGVRIVEASAF 109 (444)
T ss_pred CCHHHHHHHHHHHHHhcCCCCceEEEecccCCCcccHHHHHHHHHHcCCCEEEeccc
Confidence 566666655555543 788888877554 4578888999998766543
No 376
>cd06284 PBP1_LacI_like_6 Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group includes the ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=73.40 E-value=43 Score=29.94 Aligned_cols=61 Identities=15% Similarity=0.089 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHcCCceEeccC--Chh----hHHHHHhCCCCEEEEcCCCCCCHHHHHHHHhcCCcEEE
Q psy17999 49 EEYVMLQQCADQVDIMFTASAM--DQV----SFDFLLSANVPFIKIGSGDSNNIPLIKYAASKQKPLII 111 (335)
Q Consensus 49 e~~~~L~~~~~~~Gi~f~stpf--d~~----svd~l~~l~v~~~KIaS~d~~n~~LL~~~a~~gkPvil 111 (335)
.....+.+.+++.|+.++.... |.+ .++.+.+.++|.+-|.+.+..+. +++++ ..+.|+++
T Consensus 16 ~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~-~~~~~-~~~ipvv~ 82 (267)
T cd06284 16 EILKGIEDEAREAGYGVLLGDTRSDPEREQEYLDLLRRKQADGIILLDGSLPPT-ALTAL-AKLPPIVQ 82 (267)
T ss_pred HHHHHHHHHHHHcCCeEEEecCCCChHHHHHHHHHHHHcCCCEEEEecCCCCHH-HHHHH-hcCCCEEE
Confidence 4567788899999988654443 322 14556667899998877654443 55555 45999985
No 377
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=73.27 E-value=19 Score=35.44 Aligned_cols=46 Identities=7% Similarity=0.119 Sum_probs=33.1
Q ss_pred CHHHHHHHHhcCCcEEEeCCCCCCHHHHHHHHHHHHhcCCCCceeecccCCC
Q psy17999 95 NIPLIKYAASKQKPLIISTGMLPSIEHVDNIYTTVKQYHSNLSILHCVSAYP 146 (335)
Q Consensus 95 n~~LL~~~a~~gkPvilStG~~~tl~Ei~~Av~~i~~g~~~~~~~~c~~g~~ 146 (335)
+.+.|+++.+.|.|||+.||-+ ..|+....+.+ +.. .-++|+.|..
T Consensus 23 a~~aL~~Lk~~GI~vVlaTGRt--~~ev~~l~~~L--gl~--~p~I~eNGA~ 68 (302)
T PRK12702 23 ARQALAALERRSIPLVLYSLRT--RAQLEHLCRQL--RLE--HPFICEDGSA 68 (302)
T ss_pred HHHHHHHHHHCCCEEEEEcCCC--HHHHHHHHHHh--CCC--CeEEEeCCcE
Confidence 5778899999999999999965 66666655444 332 3577887753
No 378
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=73.25 E-value=42 Score=33.46 Aligned_cols=37 Identities=27% Similarity=0.487 Sum_probs=25.4
Q ss_pred HHHHHHHHcCCcEEEeccCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q psy17999 202 HVCYAAVAMGAQIIEKHFTLDKSWKGSDHASSLTPPELKALVTGIRD 248 (335)
Q Consensus 202 ~~~~aAvalGA~vIEkH~tld~~~~G~Dh~~Sl~p~el~~lv~~ir~ 248 (335)
.+..++..+||+.|- + .|-.-.++|+++.++++.+++
T Consensus 145 ~~~~~~~~~g~~~i~----l------~DT~G~~~P~~v~~li~~l~~ 181 (363)
T TIGR02090 145 KVFKRAEEAGADRIN----I------ADTVGVLTPQKMEELIKKLKE 181 (363)
T ss_pred HHHHHHHhCCCCEEE----E------eCCCCccCHHHHHHHHHHHhc
Confidence 344567778887543 2 155567888888888888875
No 379
>PRK14847 hypothetical protein; Provisional
Probab=73.15 E-value=68 Score=31.97 Aligned_cols=33 Identities=33% Similarity=0.276 Sum_probs=22.7
Q ss_pred CCCCeecCCCCC-C--hHHHHHHHHcCCcEEEeccCCC
Q psy17999 188 PDIPIGYSGHEN-G--VHVCYAAVAMGAQIIEKHFTLD 222 (335)
Q Consensus 188 p~~pVG~SdHt~-g--~~~~~aAvalGA~vIEkH~tld 222 (335)
+++++|+=.|.. | ..-+++|+..||+.|+ .|+.
T Consensus 239 ~~v~i~~H~HnD~GlA~ANslaA~~aGa~~i~--~tv~ 274 (333)
T PRK14847 239 DCIVLSVHPHNDRGTAVAAAELAVLAGAERIE--GCLF 274 (333)
T ss_pred CCcEEEEEeCCCCchHHHHHHHHHHhCCCEEE--eeCC
Confidence 467777766653 4 4446889999999988 4443
No 380
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=73.11 E-value=14 Score=35.19 Aligned_cols=81 Identities=16% Similarity=0.107 Sum_probs=53.8
Q ss_pred HHHHHHHcCCceEeccCChhhHHHHHhCCCCEEEEcCC------------CCCCHHHHHHHH---h-cCCc-EEEeCC-C
Q psy17999 54 LQQCADQVDIMFTASAMDQVSFDFLLSANVPFIKIGSG------------DSNNIPLIKYAA---S-KQKP-LIISTG-M 115 (335)
Q Consensus 54 L~~~~~~~Gi~f~stpfd~~svd~l~~l~v~~~KIaS~------------d~~n~~LL~~~a---~-~gkP-vilStG-~ 115 (335)
|++.-++.....+.++||..++..+++.|+|++-++++ .++--.++..+. + .+.| |+...| +
T Consensus 4 lr~l~~~~~~l~~~~ayD~~sA~l~e~aG~d~i~vGds~~~~~lG~pDt~~vtl~em~~~~~~V~r~~~~p~viaD~~fg 83 (254)
T cd06557 4 LQKMKKAGEKIVMLTAYDYPTAKLADEAGVDVILVGDSLGMVVLGYDSTLPVTLDEMIYHTRAVRRGAPRALVVADMPFG 83 (254)
T ss_pred HHHHHhCCCcEEEEeCCCHHHHHHHHHcCCCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcCCCCeEEEeCCCC
Confidence 44555566788899999999999999999999988744 123334444433 2 4678 776676 3
Q ss_pred C--CCHHH-HHHHHHHHHh-cCC
Q psy17999 116 L--PSIEH-VDNIYTTVKQ-YHS 134 (335)
Q Consensus 116 ~--~tl~E-i~~Av~~i~~-g~~ 134 (335)
+ -+.++ +.++++.+++ |..
T Consensus 84 ~y~~~~~~av~~a~r~~~~aGa~ 106 (254)
T cd06557 84 SYQTSPEQALRNAARLMKEAGAD 106 (254)
T ss_pred cccCCHHHHHHHHHHHHHHhCCe
Confidence 2 12444 5667777774 543
No 381
>PRK08999 hypothetical protein; Provisional
Probab=72.90 E-value=90 Score=29.83 Aligned_cols=125 Identities=8% Similarity=-0.024 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHcCCceEeccCChhhHHHHHhCCCCEEEEcCCCCCCHHHHHHHHhcCCcEEEeCCCCCCHHHHHHHHHHH
Q psy17999 50 EYVMLQQCADQVDIMFTASAMDQVSFDFLLSANVPFIKIGSGDSNNIPLIKYAASKQKPLIISTGMLPSIEHVDNIYTTV 129 (335)
Q Consensus 50 ~~~~L~~~~~~~Gi~f~stpfd~~svd~l~~l~v~~~KIaS~d~~n~~LL~~~a~~gkPvilStG~~~tl~Ei~~Av~~i 129 (335)
..+.|.+.|+++|+.++.. ..++.+.++|++.+=++..++..... ++ .+.-.+|+.... +.+|+.+|.+.
T Consensus 176 ~~~~l~~~~~~~~~~liin----d~~~la~~~~~~GvHl~~~d~~~~~~-r~---~~~~~~ig~S~h-~~~~~~~a~~~- 245 (312)
T PRK08999 176 LARAALGLCRRAGAQLLLN----GDPELAEDLGADGVHLTSAQLAALAA-RP---LPAGRWVAASCH-DAEELARAQRL- 245 (312)
T ss_pred HHHHHHHHHHHhCCEEEEE----CcHHHHHhcCCCEEEcChhhcChHhh-cc---CCCCCEEEEecC-CHHHHHHHHhc-
Confidence 4567778899999998876 35688899999999999988753222 22 233345555557 99998877542
Q ss_pred HhcCCCCceeecccCCCCCCCCcccccCceEEeee--cCCCCCCccCCCchHHHHHHHHCCCCCe-ecCCCCCChHHHHH
Q psy17999 130 KQYHSNLSILHCVSAYPTPYPTVKQYHSNLSILHC--VSAYPTPYHDINLNVIHTLRSRYPDIPI-GYSGHENGVHVCYA 206 (335)
Q Consensus 130 ~~g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC--~s~YP~~~~~~nL~~i~~L~~~fp~~pV-G~SdHt~g~~~~~a 206 (335)
|.. -+.+=+. |++=|. ...+.+..+..+++.+ ++|| ..-+=+ ..-...
T Consensus 246 --~~d-----------------------yi~~gpvf~t~tk~~-~~~~g~~~~~~~~~~~-~~Pv~AiGGI~--~~~~~~ 296 (312)
T PRK08999 246 --GVD-----------------------FAVLSPVQPTASHPG-AAPLGWEGFAALIAGV-PLPVYALGGLG--PGDLEE 296 (312)
T ss_pred --CCC-----------------------EEEECCCcCCCCCCC-CCCCCHHHHHHHHHhC-CCCEEEECCCC--HHHHHH
Confidence 211 1222221 111121 1346677888888888 8888 222211 222233
Q ss_pred HHHcCCc
Q psy17999 207 AVAMGAQ 213 (335)
Q Consensus 207 AvalGA~ 213 (335)
..+.||.
T Consensus 297 ~~~~g~~ 303 (312)
T PRK08999 297 AREHGAQ 303 (312)
T ss_pred HHHhCCC
Confidence 4566765
No 382
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=72.84 E-value=41 Score=32.23 Aligned_cols=27 Identities=7% Similarity=0.132 Sum_probs=16.7
Q ss_pred CCcEEEeCCCCCCHHHHHHHHHHHHh-cCC
Q psy17999 106 QKPLIISTGMLPSIEHVDNIYTTVKQ-YHS 134 (335)
Q Consensus 106 gkPvilStG~~~tl~Ei~~Av~~i~~-g~~ 134 (335)
+.|||..+| . +..|..+.++..++ |..
T Consensus 69 ~~pvi~gv~-~-~t~~~i~~a~~a~~~Gad 96 (289)
T cd00951 69 RVPVLAGAG-Y-GTATAIAYAQAAEKAGAD 96 (289)
T ss_pred CCCEEEecC-C-CHHHHHHHHHHHHHhCCC
Confidence 578888887 3 45555555555555 543
No 383
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=72.75 E-value=28 Score=32.56 Aligned_cols=82 Identities=13% Similarity=0.174 Sum_probs=56.5
Q ss_pred CCHHHHHHHHHHHHHcCCceE--eccCC-hhhHHHHHhCCCCEEEE-cC------CC---CCCHHHHHHHHh-cCCcEEE
Q psy17999 46 FSQEEYVMLQQCADQVDIMFT--ASAMD-QVSFDFLLSANVPFIKI-GS------GD---SNNIPLIKYAAS-KQKPLII 111 (335)
Q Consensus 46 l~~e~~~~L~~~~~~~Gi~f~--stpfd-~~svd~l~~l~v~~~KI-aS------~d---~~n~~LL~~~a~-~gkPvil 111 (335)
|+.|+...+.+.|+++|+..+ .+|-+ .+.++.+.+...+++-+ +. .. -+-...++++.+ ++.||++
T Consensus 113 l~~ee~~~~~~~~~~~g~~~i~~i~P~T~~~~i~~i~~~~~~~vy~~s~~g~tG~~~~~~~~~~~~i~~lr~~~~~pI~v 192 (242)
T cd04724 113 LPPEEAEEFREAAKEYGLDLIFLVAPTTPDERIKKIAELASGFIYYVSRTGVTGARTELPDDLKELIKRIRKYTDLPIAV 192 (242)
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhhCCCCEEEEeCCCCCCCccCCChhHHHHHHHHHhcCCCcEEE
Confidence 378899999999999998654 56654 45567777645665443 21 11 112355666665 3799999
Q ss_pred eCCCCCCHHHHHHHHHH
Q psy17999 112 STGMLPSIEHVDNIYTT 128 (335)
Q Consensus 112 StG~~~tl~Ei~~Av~~ 128 (335)
--|.+ +.+++..+++.
T Consensus 193 ggGI~-~~e~~~~~~~~ 208 (242)
T cd04724 193 GFGIS-TPEQAAEVAKY 208 (242)
T ss_pred EccCC-CHHHHHHHHcc
Confidence 99999 99999887765
No 384
>PLN02229 alpha-galactosidase
Probab=72.73 E-value=15 Score=37.72 Aligned_cols=73 Identities=11% Similarity=0.083 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHcCCceEec---------------cCChhhHHHHHhCCCCEEEEcCCCCCC------H-HHHHHHHhcC
Q psy17999 49 EEYVMLQQCADQVDIMFTAS---------------AMDQVSFDFLLSANVPFIKIGSGDSNN------I-PLIKYAASKQ 106 (335)
Q Consensus 49 e~~~~L~~~~~~~Gi~f~st---------------pfd~~svd~l~~l~v~~~KIaS~d~~n------~-~LL~~~a~~g 106 (335)
..++.|.+|.+++|+.|-.= -+.+.+++...+-|||++|+--+.... + .+=+++.++|
T Consensus 128 ~G~k~ladyiH~~GlKfGIy~d~G~~TC~~~pGS~g~e~~DA~~fA~WGVDylK~D~C~~~~~~~~~~y~~m~~AL~~tG 207 (427)
T PLN02229 128 SGIKLLADYVHSKGLKLGIYSDAGVFTCQVRPGSLFHEVDDADIFASWGVDYLKYDNCYNLGIKPIERYPPMRDALNATG 207 (427)
T ss_pred CcHHHHHHHHHHCCCceEEeccCCCcccCCCCCCccHHHHHHHHHHHcCCCEEEecCCCCCCcchhHHHHHHHHHHHhhC
Confidence 35999999999999998431 123445667788999999998774322 2 2446677899
Q ss_pred CcEEEeC---CCCCCHHHH
Q psy17999 107 KPLIIST---GMLPSIEHV 122 (335)
Q Consensus 107 kPvilSt---G~~~tl~Ei 122 (335)
+||++|. |.. ....+
T Consensus 208 RpI~~SlC~WG~~-~p~~w 225 (427)
T PLN02229 208 RSIFYSLCEWGVD-DPALW 225 (427)
T ss_pred CCcEEEecCCCCC-CHHHH
Confidence 9999995 655 55555
No 385
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=72.45 E-value=47 Score=32.25 Aligned_cols=126 Identities=16% Similarity=0.200 Sum_probs=65.7
Q ss_pred ceEeccCChh----------hHHHHHhCCCCEEEEcCCCC-----CC---HHHH---HHHHhcCCcEEEeCCCCCCHHHH
Q psy17999 64 MFTASAMDQV----------SFDFLLSANVPFIKIGSGDS-----NN---IPLI---KYAASKQKPLIISTGMLPSIEHV 122 (335)
Q Consensus 64 ~f~stpfd~~----------svd~l~~l~v~~~KIaS~d~-----~n---~~LL---~~~a~~gkPvilStG~~~tl~Ei 122 (335)
.++.|||+.+ .++++.+.|++.+-+..+.= +. ..++ .+++.-..|||..+|.. +.+|.
T Consensus 10 ~a~vTPF~~dg~vD~~a~~~lv~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g~~-~t~ea 88 (299)
T COG0329 10 PALVTPFDEDGSVDEEALRRLVEFLIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGGRVPVIAGVGSN-STAEA 88 (299)
T ss_pred eccccCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECCCCccchhcCHHHHHHHHHHHHHHHCCCCcEEEecCCC-cHHHH
Confidence 4556666652 24566666777666554421 11 1223 33344468999999988 78777
Q ss_pred HHHHHHHHh-cCCCCceeecccCCCCCC--------CCcccc-cCceEEeeecCCCCCCc-cCCCchHHHHHHHHCCCCC
Q psy17999 123 DNIYTTVKQ-YHSNLSILHCVSAYPTPY--------PTVKQY-HSNLSILHCVSAYPTPY-HDINLNVIHTLRSRYPDIP 191 (335)
Q Consensus 123 ~~Av~~i~~-g~~~~~~~~c~~g~~~~~--------~~~~~~-~~~l~llHC~s~YP~~~-~~~nL~~i~~L~~~fp~~p 191 (335)
.+-.+..++ |-. -+++-..-|..+. ..+-+. +-+++|. ++|... .++....|..|.+ .|+ -
T Consensus 89 i~lak~a~~~Gad--~il~v~PyY~k~~~~gl~~hf~~ia~a~~lPvilY----N~P~~tg~~l~~e~i~~la~-~~n-i 160 (299)
T COG0329 89 IELAKHAEKLGAD--GILVVPPYYNKPSQEGLYAHFKAIAEAVDLPVILY----NIPSRTGVDLSPETIARLAE-HPN-I 160 (299)
T ss_pred HHHHHHHHhcCCC--EEEEeCCCCcCCChHHHHHHHHHHHHhcCCCEEEE----eCccccCCCCCHHHHHHHhc-CCC-E
Confidence 777777776 543 2222222111110 000000 1133433 455444 5677778888877 643 4
Q ss_pred eecCCCC
Q psy17999 192 IGYSGHE 198 (335)
Q Consensus 192 VG~SdHt 198 (335)
||.=|=+
T Consensus 161 vgiKd~~ 167 (299)
T COG0329 161 VGVKDSS 167 (299)
T ss_pred EEEEeCC
Confidence 6764433
No 386
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=72.26 E-value=15 Score=34.50 Aligned_cols=52 Identities=23% Similarity=0.191 Sum_probs=40.5
Q ss_pred HHHHHhCCCCEEEEcCCCC------CCHHHHHHHHhc-CCcEEEeCCCCCCHHHHHHHHH
Q psy17999 75 FDFLLSANVPFIKIGSGDS------NNIPLIKYAASK-QKPLIISTGMLPSIEHVDNIYT 127 (335)
Q Consensus 75 vd~l~~l~v~~~KIaS~d~------~n~~LL~~~a~~-gkPvilStG~~~tl~Ei~~Av~ 127 (335)
+..+++.|++.+-+.+.+- -|+++++++++. +.|||.+-|.+ +++++.++.+
T Consensus 161 ~~~l~~~G~~~iivt~i~~~g~~~g~~~~~~~~i~~~~~ipvia~GGi~-s~~di~~~~~ 219 (254)
T TIGR00735 161 AKEVEKLGAGEILLTSMDKDGTKSGYDLELTKAVSEAVKIPVIASGGAG-KPEHFYEAFT 219 (254)
T ss_pred HHHHHHcCCCEEEEeCcCcccCCCCCCHHHHHHHHHhCCCCEEEeCCCC-CHHHHHHHHH
Confidence 3566678999888844332 468999998865 88999999999 9999997654
No 387
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=72.20 E-value=26 Score=40.33 Aligned_cols=158 Identities=18% Similarity=0.225 Sum_probs=97.5
Q ss_pred CCCcc-cHHHHHHhh-cCCHHHHHHHHHHHHHcCCceEec--------cCChhh----HHHHHhCCCCEEEEcCCCCCCH
Q psy17999 31 HAWAN-TYGQHKQHL-EFSQEEYVMLQQCADQVDIMFTAS--------AMDQVS----FDFLLSANVPFIKIGSGDSNNI 96 (335)
Q Consensus 31 ~~~~~-~~~~~~~~~-el~~e~~~~L~~~~~~~Gi~f~st--------pfd~~s----vd~l~~l~v~~~KIaS~d~~n~ 96 (335)
.-||. +|.--++++ |=|++-++.|++...+.-+..+.. ++-.+- ++...+.|+|.+.|=- -+|+.
T Consensus 573 E~wggAtfd~~~rfl~EdPwerl~~~r~~~pn~~~qml~Rg~n~vgy~~ypd~vv~~f~~~~~~~GidifrifD-~lN~~ 651 (1143)
T TIGR01235 573 ECWGGATFDVAMRFLHEDPWERLEDLRKGVPNILFQMLLRGANGVGYTNYPDNVVKYFVKQAAQGGIDIFRVFD-SLNWV 651 (1143)
T ss_pred EeeCCccHHHHHHHhcCCHHHHHHHHHHhCCCCceeeeeccccccCccCCCHHHHHHHHHHHHHcCCCEEEECc-cCcCH
Confidence 34764 554434443 578888888888887666655443 333333 3445567899999943 34444
Q ss_pred HHHH----HHHhcCCc---EEEeCC--------CCCCHHHHHHHHHHHHh-cCCCCceeecccCCCCCCCCcccccCceE
Q psy17999 97 PLIK----YAASKQKP---LIISTG--------MLPSIEHVDNIYTTVKQ-YHSNLSILHCVSAYPTPYPTVKQYHSNLS 160 (335)
Q Consensus 97 ~LL~----~~a~~gkP---vilStG--------~~~tl~Ei~~Av~~i~~-g~~~~~~~~c~~g~~~~~~~~~~~~~~l~ 160 (335)
+=++ ++.+.|+- -|.=|| .. |++-+.+.++.+.. |.. .|-+|+..
T Consensus 652 ~n~~~~~~~~~~~g~~~~~~i~yt~~~~d~~~~~~-~l~y~~~~ak~l~~~Gad--~I~ikDt~---------------- 712 (1143)
T TIGR01235 652 ENMRVGMDAVAEAGKVVEAAICYTGDILDPARPKY-DLKYYTNLAVELEKAGAH--ILGIKDMA---------------- 712 (1143)
T ss_pred HHHHHHHHHHHHcCCEEEEEEEEeccCCCcCCCCC-CHHHHHHHHHHHHHcCCC--EEEECCCc----------------
Confidence 4443 34445663 344465 33 57777777776766 644 44444432
Q ss_pred EeeecCCCCCCccCCCchHHHHHHHHCCCCCeecCCCCC-C--hHHHHHHHHcCCcEEEe
Q psy17999 161 ILHCVSAYPTPYHDINLNVIHTLRSRYPDIPIGYSGHEN-G--VHVCYAAVAMGAQIIEK 217 (335)
Q Consensus 161 llHC~s~YP~~~~~~nL~~i~~L~~~fp~~pVG~SdHt~-g--~~~~~aAvalGA~vIEk 217 (335)
..=+|..-..| +..||+.+ ++||++=.|.. | ....++|+..||++|.-
T Consensus 713 ------Gll~P~~~~~L--v~~lk~~~-~~pi~~H~Hdt~Gla~an~laA~eaGad~vD~ 763 (1143)
T TIGR01235 713 ------GLLKPAAAKLL--IKALREKT-DLPIHFHTHDTSGIAVASMLAAVEAGVDVVDV 763 (1143)
T ss_pred ------CCcCHHHHHHH--HHHHHHhc-CCeEEEEECCCCCcHHHHHHHHHHhCCCEEEe
Confidence 22333333333 77889999 89999988864 4 56678999999999884
No 388
>cd06287 PBP1_LacI_like_8 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=72.13 E-value=64 Score=29.76 Aligned_cols=85 Identities=7% Similarity=-0.045 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHcCCceEeccCChhhHHHHHhCCCCEEEEcCCCCCCHHHHHHHHhcCCcEEEeCCCC--------C--
Q psy17999 48 QEEYVMLQQCADQVDIMFTASAMDQVSFDFLLSANVPFIKIGSGDSNNIPLIKYAASKQKPLIISTGML--------P-- 117 (335)
Q Consensus 48 ~e~~~~L~~~~~~~Gi~f~stpfd~~svd~l~~l~v~~~KIaS~d~~n~~LL~~~a~~gkPvilStG~~--------~-- 117 (335)
-+-+..|.+.+++.|..++....+. .-+.+...++|.+-+.+.+. +.+.++.+.+.+.|+++--... .
T Consensus 23 ~~~~~~i~~~~~~~gy~~~~~~~~~-~~~~l~~~~vdgiIi~~~~~-~~~~~~~l~~~~iPvV~i~~~~~~~~~~~~V~~ 100 (269)
T cd06287 23 MEVAAAAAESALERGLALCLVPPHE-ADSPLDALDIDGAILVEPMA-DDPQVARLRQRGIPVVSIGRPPGDRTDVPYVDL 100 (269)
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCC-chhhhhccCcCeEEEecCCC-CCHHHHHHHHcCCCEEEeCCCCCCCCCCCeEee
Confidence 3567888999999999998877652 23566778899988876554 4577888888899987552110 0
Q ss_pred -CHHHHHHHHHHHHh-cCC
Q psy17999 118 -SIEHVDNIYTTVKQ-YHS 134 (335)
Q Consensus 118 -tl~Ei~~Av~~i~~-g~~ 134 (335)
..+-...|++.+.+ |..
T Consensus 101 d~~~~~~~a~~~L~~~G~~ 119 (269)
T cd06287 101 QSAATARMLLEHLRAQGAR 119 (269)
T ss_pred CcHHHHHHHHHHHHHcCCC
Confidence 13445667777776 554
No 389
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=72.02 E-value=30 Score=33.86 Aligned_cols=91 Identities=16% Similarity=0.112 Sum_probs=57.0
Q ss_pred cCCcEEEeCCCCCCHHHHHHHHHHHHh-cCCCCceeecccCCCCCCCCcccccCceEEeeec--CCCCCCc----cCCCc
Q psy17999 105 KQKPLIISTGMLPSIEHVDNIYTTVKQ-YHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCV--SAYPTPY----HDINL 177 (335)
Q Consensus 105 ~gkPvilStG~~~tl~Ei~~Av~~i~~-g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~--s~YP~~~----~~~nL 177 (335)
.++|||+|.+.. +.+|+.+++..+.. | . +..-+|+. -..+... .+.-.
T Consensus 100 ~~~pvi~sI~g~-~~~e~~~~a~~~~~ag-a-----------------------d~ielN~scpp~~~~~~g~~~~~~~~ 154 (334)
T PRK07565 100 VDIPVIASLNGS-SAGGWVDYARQIEQAG-A-----------------------DALELNIYYLPTDPDISGAEVEQRYL 154 (334)
T ss_pred cCCcEEEEeccC-CHHHHHHHHHHHHHcC-C-----------------------CEEEEeCCCCCCCCCCccccHHHHHH
Confidence 478999999998 99999999888876 4 2 45555532 1111100 01124
Q ss_pred hHHHHHHHHCCCCCeec--CCCCCC-hHHHHHHHHcCCcEEEeccCC
Q psy17999 178 NVIHTLRSRYPDIPIGY--SGHENG-VHVCYAAVAMGAQIIEKHFTL 221 (335)
Q Consensus 178 ~~i~~L~~~fp~~pVG~--SdHt~g-~~~~~aAvalGA~vIEkH~tl 221 (335)
..+..+++.. ++||.. +..... ...+.++...||+-|--|-|.
T Consensus 155 eil~~v~~~~-~iPV~vKl~p~~~~~~~~a~~l~~~G~dgI~~~n~~ 200 (334)
T PRK07565 155 DILRAVKSAV-SIPVAVKLSPYFSNLANMAKRLDAAGADGLVLFNRF 200 (334)
T ss_pred HHHHHHHhcc-CCcEEEEeCCCchhHHHHHHHHHHcCCCeEEEECCc
Confidence 5667788876 789852 433222 455666778999966656553
No 390
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=71.71 E-value=77 Score=30.23 Aligned_cols=142 Identities=14% Similarity=0.171 Sum_probs=91.2
Q ss_pred CCHHHHHHHHHHHHHcCCc--eEeccCChhhHHHHHhCCCCEEEEcCCCCCCHHHHHHHHhc-CCcEEEeCC--------
Q psy17999 46 FSQEEYVMLQQCADQVDIM--FTASAMDQVSFDFLLSANVPFIKIGSGDSNNIPLIKYAASK-QKPLIISTG-------- 114 (335)
Q Consensus 46 l~~e~~~~L~~~~~~~Gi~--f~stpfd~~svd~l~~l~v~~~KIaS~d~~n~~LL~~~a~~-gkPvilStG-------- 114 (335)
-.......+.+.++...+. +-=-.-|.+.++.+.++|+..+-|+|.-+.|+++++++.+. |--|+++--
T Consensus 59 g~~~n~~~i~~i~~~~~~~vQvGGGIRs~~~v~~ll~~G~~rViiGt~av~~p~~v~~~~~~~g~rivv~lD~r~g~vav 138 (241)
T COG0106 59 GGPRNLEAIKEILEATDVPVQVGGGIRSLEDVEALLDAGVARVIIGTAAVKNPDLVKELCEEYGDRIVVALDARDGKVAV 138 (241)
T ss_pred CCcccHHHHHHHHHhCCCCEEeeCCcCCHHHHHHHHHCCCCEEEEecceecCHHHHHHHHHHcCCcEEEEEEccCCcccc
Confidence 3445677888888888544 44456899999999999999999999999999999998874 555555421
Q ss_pred -CCC--CHHHHHHHHHHHHh-cCCCCceeecccCCCCCCCCcccccCceEEeeecCCCCCCccCCCchHHHHHHHHCCCC
Q psy17999 115 -MLP--SIEHVDNIYTTVKQ-YHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYPTPYHDINLNVIHTLRSRYPDI 190 (335)
Q Consensus 115 -~~~--tl~Ei~~Av~~i~~-g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~s~YP~~~~~~nL~~i~~L~~~fp~~ 190 (335)
+.. |--++...++.+.. |.. -++|--..+-| -..-+|+..+..|.+.+ ++
T Consensus 139 ~GW~e~s~~~~~~l~~~~~~~g~~---~ii~TdI~~DG----------------------tl~G~n~~l~~~l~~~~-~i 192 (241)
T COG0106 139 SGWQEDSGVELEELAKRLEEVGLA---HILYTDISRDG----------------------TLSGPNVDLVKELAEAV-DI 192 (241)
T ss_pred ccccccccCCHHHHHHHHHhcCCC---eEEEEeccccc----------------------ccCCCCHHHHHHHHHHh-Cc
Confidence 110 01122223333444 332 22222211111 11348999999999999 99
Q ss_pred CeecCCCCCChHHHHHHHHc-CCc
Q psy17999 191 PIGYSGHENGVHVCYAAVAM-GAQ 213 (335)
Q Consensus 191 pVG~SdHt~g~~~~~aAval-GA~ 213 (335)
||-+|+=-....=..++..+ |..
T Consensus 193 pviaSGGv~s~~Di~~l~~~~G~~ 216 (241)
T COG0106 193 PVIASGGVSSLDDIKALKELSGVE 216 (241)
T ss_pred CEEEecCcCCHHHHHHHHhcCCCc
Confidence 99999755544444445555 665
No 391
>PRK15452 putative protease; Provisional
Probab=71.71 E-value=1.3e+02 Score=31.11 Aligned_cols=138 Identities=13% Similarity=0.178 Sum_probs=91.4
Q ss_pred CceEeccCChhhHHHHHhCCCCEEEEcCCCCC--------CHHHHHH----HHhcCCcEEEeCCCCCCHHHHHHHHHHHH
Q psy17999 63 IMFTASAMDQVSFDFLLSANVPFIKIGSGDSN--------NIPLIKY----AASKQKPLIISTGMLPSIEHVDNIYTTVK 130 (335)
Q Consensus 63 i~f~stpfd~~svd~l~~l~v~~~KIaS~d~~--------n~~LL~~----~a~~gkPvilStG~~~tl~Ei~~Av~~i~ 130 (335)
...++.+=+.+++..+.+.|+|.+=+|....+ +..-|++ +-+.|+.|.+.+..-+..+|++...+++.
T Consensus 4 peLlapag~~e~l~aAi~~GADaVY~G~~~~~~R~~~~~f~~edl~eav~~ah~~g~kvyvt~n~i~~e~el~~~~~~l~ 83 (443)
T PRK15452 4 PELLSPAGTLKNMRYAFAYGADAVYAGQPRYSLRVRNNEFNHENLALGINEAHALGKKFYVVVNIAPHNAKLKTFIRDLE 83 (443)
T ss_pred cEEEEECCCHHHHHHHHHCCCCEEEECCCccchhhhccCCCHHHHHHHHHHHHHcCCEEEEEecCcCCHHHHHHHHHHHH
Confidence 35677788899999999999999999654221 2222332 33468999998775556778887777776
Q ss_pred h-cCCCCceeecccCCCCCCCCcccccCceEEeeecCCCCCCccCCCchHHHHHHHHCCCCCeecC--CCCCChHHHHHH
Q psy17999 131 Q-YHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYPTPYHDINLNVIHTLRSRYPDIPIGYS--GHENGVHVCYAA 207 (335)
Q Consensus 131 ~-g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~s~YP~~~~~~nL~~i~~L~~~fp~~pVG~S--dHt~g~~~~~aA 207 (335)
. ... | +...=--|+..+..+++.+|+++|-.| -......+...-
T Consensus 84 ~l~~~---------g------------------------vDgvIV~d~G~l~~~ke~~p~l~ih~stqlni~N~~a~~f~ 130 (443)
T PRK15452 84 PVIAM---------K------------------------PDALIMSDPGLIMMVREHFPEMPIHLSVQANAVNWATVKFW 130 (443)
T ss_pred HHHhC---------C------------------------CCEEEEcCHHHHHHHHHhCCCCeEEEEecccCCCHHHHHHH
Confidence 4 211 0 001123679999999998999988433 344556666667
Q ss_pred HHcCCcEEEeccCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q psy17999 208 VAMGAQIIEKHFTLDKSWKGSDHASSLTPPELKALVTGI 246 (335)
Q Consensus 208 valGA~vIEkH~tld~~~~G~Dh~~Sl~p~el~~lv~~i 246 (335)
..+||. .+||.+. |+.+|++.+.+..
T Consensus 131 ~~lG~~----rvvLSrE---------Lsl~EI~~i~~~~ 156 (443)
T PRK15452 131 QQMGLT----RVILSRE---------LSLEEIEEIRQQC 156 (443)
T ss_pred HHCCCc----EEEECCc---------CCHHHHHHHHhhC
Confidence 788995 3455543 4567888886543
No 392
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=71.67 E-value=99 Score=29.78 Aligned_cols=174 Identities=11% Similarity=0.100 Sum_probs=87.4
Q ss_pred cCCceEeccCCh--hhHH---HHHhC---CCCEEEEcCC--------CC-CCHHHHHHHHh-----cCCcEEEeCCCCCC
Q psy17999 61 VDIMFTASAMDQ--VSFD---FLLSA---NVPFIKIGSG--------DS-NNIPLIKYAAS-----KQKPLIISTGMLPS 118 (335)
Q Consensus 61 ~Gi~f~stpfd~--~svd---~l~~l---~v~~~KIaS~--------d~-~n~~LL~~~a~-----~gkPvilStG~~~t 118 (335)
.+..++.+.+.. +-++ .+++. ++|++-|-=+ .+ .+..++.++-+ +.+||+++.....+
T Consensus 90 ~~~pvivsi~g~~~~~~~~~~~~~~~~~~~ad~ielN~sCPn~~~~~~~~~~~~~~~~i~~~v~~~~~iPv~vKl~p~~~ 169 (294)
T cd04741 90 SAKPFFISVTGSAEDIAAMYKKIAAHQKQFPLAMELNLSCPNVPGKPPPAYDFDATLEYLTAVKAAYSIPVGVKTPPYTD 169 (294)
T ss_pred cCCeEEEECCCCHHHHHHHHHHHHhhccccccEEEEECCCCCCCCcccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCCC
Confidence 578888888863 2222 23332 4777766322 22 25666655443 47999999886547
Q ss_pred HHHHHHHHHHHHhc--CCCCceeecccCCCCCCCCcccc-cCceEE--eeecCCCCCCc-cCCCchHHHHHHHHCC-CCC
Q psy17999 119 IEHVDNIYTTVKQY--HSNLSILHCVSAYPTPYPTVKQY-HSNLSI--LHCVSAYPTPY-HDINLNVIHTLRSRYP-DIP 191 (335)
Q Consensus 119 l~Ei~~Av~~i~~g--~~~~~~~~c~~g~~~~~~~~~~~-~~~l~l--lHC~s~YP~~~-~~~nL~~i~~L~~~fp-~~p 191 (335)
.+++.++++.+... +- .-+.+-.-+..+. .+ +. .....+ -+....|--+. ....|+.+..++++.+ ++|
T Consensus 170 ~~~~~~~a~~l~~~~~G~--~gi~~~Nt~~~~~-~i-d~~~~~~~~~~~~~~gG~SG~~i~~~al~~v~~~~~~~~~~ip 245 (294)
T cd04741 170 PAQFDTLAEALNAFACPI--SFITATNTLGNGL-VL-DPERETVVLKPKTGFGGLAGAYLHPLALGNVRTFRRLLPSEIQ 245 (294)
T ss_pred HHHHHHHHHHHhccccCC--cEEEEEccCCccc-cc-cCCCCCcccCCCCCCCCcCchhhHHHHHHHHHHHHHhcCCCCC
Confidence 77888887776552 22 1111100000000 00 00 000000 01111122111 3355788888988885 488
Q ss_pred eecCCCCCChHHHHHHHHcCCcEEEeccCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q psy17999 192 IGYSGHENGVHVCYAAVAMGAQIIEKHFTLDKSWKGSDHASSLTPPELKALVTGIRD 248 (335)
Q Consensus 192 VG~SdHt~g~~~~~aAvalGA~vIEkH~tld~~~~G~Dh~~Sl~p~el~~lv~~ir~ 248 (335)
|.=++=-....-++-.+..||+.+.- -+..- --.|.-++++.+.+++
T Consensus 246 Iig~GGI~s~~da~e~l~aGA~~Vqv----~ta~~------~~gp~~~~~i~~~L~~ 292 (294)
T cd04741 246 IIGVGGVLDGRGAFRMRLAGASAVQV----GTALG------KEGPKVFARIEKELED 292 (294)
T ss_pred EEEeCCCCCHHHHHHHHHcCCCceeE----chhhh------hcCchHHHHHHHHHHh
Confidence 84333222233344445589998772 12211 0145678888777764
No 393
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=71.67 E-value=22 Score=33.48 Aligned_cols=80 Identities=15% Similarity=0.112 Sum_probs=58.3
Q ss_pred HHHHHHcCCceEeccCChhhHHHHHhCCCCEEEEcCC------------CCCCHHHHHHH---Hh-cCCcEEEe--CCCC
Q psy17999 55 QQCADQVDIMFTASAMDQVSFDFLLSANVPFIKIGSG------------DSNNIPLIKYA---AS-KQKPLIIS--TGML 116 (335)
Q Consensus 55 ~~~~~~~Gi~f~stpfd~~svd~l~~l~v~~~KIaS~------------d~~n~~LL~~~---a~-~gkPvilS--tG~~ 116 (335)
++.-+..++.++..+||.-|...+++.|.+++.++|. .++--+++..+ ++ +.+||++. ||-+
T Consensus 2 r~L~~~~~~l~~p~~~D~~SAr~~e~~Gf~ai~~sg~~~a~s~G~pD~~~lt~~e~~~~~~~I~~~~~iPv~vD~d~GyG 81 (238)
T PF13714_consen 2 RQLHEPGKPLVLPNVWDALSARLAERAGFDAIATSGAGVAASLGYPDGGLLTLTEMLAAVRRIARAVSIPVIVDADTGYG 81 (238)
T ss_dssp HHHHHSSSSEEEEEESSHHHHHHHHHTT-SEEEEHHHHHHHHTTS-SSS-S-HHHHHHHHHHHHHHSSSEEEEE-TTTSS
T ss_pred hhhhcCCCcEEeCCCcCHHHHHHHHHcCCCEEEechHHHHHHcCCCCCCCCCHHHHHHHHHHHHhhhcCcEEEEcccccC
Confidence 4433344899999999999999999999999999864 33444444443 33 69999987 8866
Q ss_pred CCHHHHHHHHHHHHh-cCC
Q psy17999 117 PSIEHVDNIYTTVKQ-YHS 134 (335)
Q Consensus 117 ~tl~Ei~~Av~~i~~-g~~ 134 (335)
-+...+.+.|+.+.+ |-.
T Consensus 82 ~~~~~v~~tv~~~~~aG~a 100 (238)
T PF13714_consen 82 NDPENVARTVRELERAGAA 100 (238)
T ss_dssp SSHHHHHHHHHHHHHCT-S
T ss_pred chhHHHHHHHHHHHHcCCc
Confidence 149999999998887 755
No 394
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=71.60 E-value=82 Score=28.82 Aligned_cols=107 Identities=12% Similarity=0.133 Sum_probs=64.6
Q ss_pred hHHHHHhCCCCEE--EEcCCCCCCHHHHHHHH-------hcCCcEEEeCCC--------CCCHHHHHHHHHHHHhcCCCC
Q psy17999 74 SFDFLLSANVPFI--KIGSGDSNNIPLIKYAA-------SKQKPLIISTGM--------LPSIEHVDNIYTTVKQYHSNL 136 (335)
Q Consensus 74 svd~l~~l~v~~~--KIaS~d~~n~~LL~~~a-------~~gkPvilStG~--------~~tl~Ei~~Av~~i~~g~~~~ 136 (335)
+++.+.+.|++.+ .+.-+...+-.+++.++ +.|.|+|+..-. . +.+++..+++...+.+.
T Consensus 81 ~v~~a~~~Ga~~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~g~~~iie~~~~g~~~~~~~-~~~~i~~~~~~a~~~Ga-- 157 (235)
T cd00958 81 SVEDAVRLGADAVGVTVYVGSEEEREMLEELARVAAEAHKYGLPLIAWMYPRGPAVKNEK-DPDLIAYAARIGAELGA-- 157 (235)
T ss_pred CHHHHHHCCCCEEEEEEecCCchHHHHHHHHHHHHHHHHHcCCCEEEEEeccCCcccCcc-CHHHHHHHHHHHHHHCC--
Confidence 4677778888876 55544444333333333 368999996633 2 46777876555544222
Q ss_pred ceeecccCCCCCCCCcccccCceEEeeecCCCCCCccCCCchHHHHHHHHCCCCCeecCCC-CCC-h----HHHHHHHHc
Q psy17999 137 SILHCVSAYPTPYPTVKQYHSNLSILHCVSAYPTPYHDINLNVIHTLRSRYPDIPIGYSGH-ENG-V----HVCYAAVAM 210 (335)
Q Consensus 137 ~~~~c~~g~~~~~~~~~~~~~~l~llHC~s~YP~~~~~~nL~~i~~L~~~fp~~pVG~SdH-t~g-~----~~~~aAval 210 (335)
+++-. .||. ++..+..+.+.. .+||..++. +.. . .....+...
T Consensus 158 ---------------------D~Ik~----~~~~-----~~~~~~~i~~~~-~~pvv~~GG~~~~~~~~~l~~~~~~~~~ 206 (235)
T cd00958 158 ---------------------DIVKT----KYTG-----DAESFKEVVEGC-PVPVVIAGGPKKDSEEEFLKMVYDAMEA 206 (235)
T ss_pred ---------------------CEEEe----cCCC-----CHHHHHHHHhcC-CCCEEEeCCCCCCCHHHHHHHHHHHHHc
Confidence 33333 2332 788888888877 689866654 222 1 335667889
Q ss_pred CCcE
Q psy17999 211 GAQI 214 (335)
Q Consensus 211 GA~v 214 (335)
||+-
T Consensus 207 Ga~g 210 (235)
T cd00958 207 GAAG 210 (235)
T ss_pred CCcE
Confidence 9983
No 395
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=71.53 E-value=67 Score=29.09 Aligned_cols=62 Identities=11% Similarity=0.036 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHcCCceEeccCCh---hh-HHHHHhCCCCEEEEcCCCCCCHHHHHHHHhcCCcEEE
Q psy17999 49 EEYVMLQQCADQVDIMFTASAMDQ---VS-FDFLLSANVPFIKIGSGDSNNIPLIKYAASKQKPLII 111 (335)
Q Consensus 49 e~~~~L~~~~~~~Gi~f~stpfd~---~s-vd~l~~l~v~~~KIaS~d~~n~~LL~~~a~~gkPvil 111 (335)
+.+..+.+.+++.|+.+.....+. .. .+.+.+.++|.+-|.+.+. +...++++.+.|.||++
T Consensus 27 ~~~~gi~~~~~~~g~~~~v~~~~~~~~~~~~~~l~~~~~dgiii~~~~~-~~~~~~~~~~~~ipvV~ 92 (275)
T cd06295 27 SLLGGIADALAERGYDLLLSFVSSPDRDWLARYLASGRADGVILIGQHD-QDPLPERLAETGLPFVV 92 (275)
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCchhHHHHHHHHHhCCCCEEEEeCCCC-ChHHHHHHHhCCCCEEE
Confidence 445667788999998866544432 23 3445566899988866543 45778888888999986
No 396
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=71.52 E-value=52 Score=32.08 Aligned_cols=88 Identities=14% Similarity=0.110 Sum_probs=64.5
Q ss_pred CCHHHHHHHHHHHHHcCCceEeccCCh--h----hHHHHHhCCCCEEEEcCCCCCCHHHHHHHHhcCCcEEEeCCCC---
Q psy17999 46 FSQEEYVMLQQCADQVDIMFTASAMDQ--V----SFDFLLSANVPFIKIGSGDSNNIPLIKYAASKQKPLIISTGML--- 116 (335)
Q Consensus 46 l~~e~~~~L~~~~~~~Gi~f~stpfd~--~----svd~l~~l~v~~~KIaS~d~~n~~LL~~~a~~gkPvilStG~~--- 116 (335)
+..+-+.-+.+.|++.|..++....+. + .++.+.+.+||.+-+.+ ...|.++++.+.+.+.|+++=-...
T Consensus 72 ~~~~i~~gi~~~~~~~gy~~~l~~~~~~~~~e~~~~~~l~~~~vdGiIi~~-~~~~~~~~~~l~~~~~P~V~i~~~~~~~ 150 (333)
T COG1609 72 FFAEILKGIEEAAREAGYSLLLANTDDDPEKEREYLETLLQKRVDGLILLG-ERPNDSLLELLAAAGIPVVVIDRSPPGL 150 (333)
T ss_pred hHHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEec-CCCCHHHHHHHHhcCCCEEEEeCCCccC
Confidence 444667888999999999998888775 2 25677778899999998 7788899999999999976643211
Q ss_pred ----C---CHHHHHHHHHHHHh-cCC
Q psy17999 117 ----P---SIEHVDNIYTTVKQ-YHS 134 (335)
Q Consensus 117 ----~---tl~Ei~~Av~~i~~-g~~ 134 (335)
. +.+=...|++++.+ |+.
T Consensus 151 ~~~~V~~Dn~~~~~~a~~~L~~~G~~ 176 (333)
T COG1609 151 GVPSVGIDNFAGAYLATEHLIELGHR 176 (333)
T ss_pred CCCEEEEChHHHHHHHHHHHHHCCCc
Confidence 1 23334557777776 555
No 397
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=71.50 E-value=65 Score=32.13 Aligned_cols=32 Identities=25% Similarity=0.286 Sum_probs=25.2
Q ss_pred EEEEcCCCCCCHHHHHHHHh-------c-CCcEEEeCCCC
Q psy17999 85 FIKIGSGDSNNIPLIKYAAS-------K-QKPLIISTGML 116 (335)
Q Consensus 85 ~~KIaS~d~~n~~LL~~~a~-------~-gkPvilStG~~ 116 (335)
.+|+|+.-+.|...++++++ . .+||++..||.
T Consensus 4 ViK~GGs~~~~~~~i~~~~~~i~~~~~~g~~~vvV~sg~~ 43 (401)
T TIGR00656 4 VQKFGGTSVGSGERIKNAARIVLKEKKEGHKVVVVVSAMS 43 (401)
T ss_pred EEEECCcCcCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCC
Confidence 57999999999998888764 1 36788888875
No 398
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=71.49 E-value=31 Score=34.26 Aligned_cols=93 Identities=14% Similarity=0.111 Sum_probs=72.7
Q ss_pred CHHHHHHHHHHHHHc---CCce-EeccCChhhHHHHHhCCCCEEE-----EcCC-CCCCHHHHHHHHhc-CCcEEEeCCC
Q psy17999 47 SQEEYVMLQQCADQV---DIMF-TASAMDQVSFDFLLSANVPFIK-----IGSG-DSNNIPLIKYAASK-QKPLIISTGM 115 (335)
Q Consensus 47 ~~e~~~~L~~~~~~~---Gi~f-~stpfd~~svd~l~~l~v~~~K-----IaS~-d~~n~~LL~~~a~~-gkPvilStG~ 115 (335)
...+..++.+.|+++ |+.+ .-+.-|+.....++++|+-++- |||+ -+.|...|+.+.+. +.|||+.-|-
T Consensus 179 llpd~~~~v~aa~~L~~~Gf~v~~yc~~d~~~a~~l~~~g~~avmPl~~pIGsg~gv~~p~~i~~~~e~~~vpVivdAGI 258 (326)
T PRK11840 179 LYPDMVETLKATEILVKEGFQVMVYCSDDPIAAKRLEDAGAVAVMPLGAPIGSGLGIQNPYTIRLIVEGATVPVLVDAGV 258 (326)
T ss_pred cccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcCCEEEeeccccccCCCCCCCHHHHHHHHHcCCCcEEEeCCC
Confidence 345688999999999 9999 6677788888999999985443 4444 46699999887765 7899999999
Q ss_pred CCCHHHHHHHHHHHHhcCCCCceeecccCCC
Q psy17999 116 LPSIEHVDNIYTTVKQYHSNLSILHCVSAYP 146 (335)
Q Consensus 116 ~~tl~Ei~~Av~~i~~g~~~~~~~~c~~g~~ 146 (335)
+ +.+++..|++. |. .-+|+-+|+.
T Consensus 259 g-~~sda~~Amel---Ga---dgVL~nSaIa 282 (326)
T PRK11840 259 G-TASDAAVAMEL---GC---DGVLMNTAIA 282 (326)
T ss_pred C-CHHHHHHHHHc---CC---CEEEEcceec
Confidence 9 99999999874 43 3456666665
No 399
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=71.38 E-value=44 Score=31.23 Aligned_cols=103 Identities=11% Similarity=0.118 Sum_probs=69.7
Q ss_pred CCCCCHHHHHHHHhc-CCcEEEeCCCCCCHHHHHHHHHHHHhcCCCCceeecccCCCCCCCCcccccCceEEeeecCCCC
Q psy17999 91 GDSNNIPLIKYAASK-QKPLIISTGMLPSIEHVDNIYTTVKQYHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYP 169 (335)
Q Consensus 91 ~d~~n~~LL~~~a~~-gkPvilStG~~~tl~Ei~~Av~~i~~g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~s~YP 169 (335)
+.-.|+++++++++. +.||.+--|.. ++++++..++. |.. ++++ .+..
T Consensus 60 ~~~~n~~~I~~i~~~~~~pi~vGGGIr-s~e~v~~~l~~---Ga~-----------------------kvvi--gt~a-- 108 (234)
T PRK13587 60 QHAREFDYIKSLRRLTTKDIEVGGGIR-TKSQIMDYFAA---GIN-----------------------YCIV--GTKG-- 108 (234)
T ss_pred CCcchHHHHHHHHhhcCCeEEEcCCcC-CHHHHHHHHHC---CCC-----------------------EEEE--CchH--
Confidence 566899999999885 68999999999 99999887552 443 2211 1111
Q ss_pred CCccCCCchHHHHHHHHCCCCCeecC-CCCCC---------------hHHHHHHHHcCCc-EEEeccCCCCCCCCCC
Q psy17999 170 TPYHDINLNVIHTLRSRYPDIPIGYS-GHENG---------------VHVCYAAVAMGAQ-IIEKHFTLDKSWKGSD 229 (335)
Q Consensus 170 ~~~~~~nL~~i~~L~~~fp~~pVG~S-dHt~g---------------~~~~~aAvalGA~-vIEkH~tld~~~~G~D 229 (335)
--|...+..+.++||+- |..| |+-.| .........+|+. +|=.+++-|-.+.|+|
T Consensus 109 ----~~~~~~l~~~~~~fg~~-ivvslD~~~g~v~~~gw~~~~~~~~~~~~~~~~~~g~~~ii~tdi~~dGt~~G~~ 180 (234)
T PRK13587 109 ----IQDTDWLKEMAHTFPGR-IYLSVDAYGEDIKVNGWEEDTELNLFSFVRQLSDIPLGGIIYTDIAKDGKMSGPN 180 (234)
T ss_pred ----hcCHHHHHHHHHHcCCC-EEEEEEeeCCEEEecCCcccCCCCHHHHHHHHHHcCCCEEEEecccCcCCCCccC
Confidence 12556688889999643 4333 43222 3334445677876 8888888888889987
No 400
>PLN02692 alpha-galactosidase
Probab=71.21 E-value=8.3 Score=39.42 Aligned_cols=65 Identities=9% Similarity=0.146 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHcCCceE---------eccCC-------hhhHHHHHhCCCCEEEEcCCCCC--C----H-HHHHHHHhc
Q psy17999 49 EEYVMLQQCADQVDIMFT---------ASAMD-------QVSFDFLLSANVPFIKIGSGDSN--N----I-PLIKYAASK 105 (335)
Q Consensus 49 e~~~~L~~~~~~~Gi~f~---------stpfd-------~~svd~l~~l~v~~~KIaS~d~~--n----~-~LL~~~a~~ 105 (335)
..++.|.+|++++|+.|- |...- ...++...+-|||++|+--+... + + .+-+++.++
T Consensus 121 ~G~k~ladyiH~~GLKfGIy~d~G~~tC~~~~pGS~g~e~~DA~~fA~WGvDylK~D~C~~~~~~~~~~y~~m~~AL~~t 200 (412)
T PLN02692 121 SGIKALADYVHSKGLKLGIYSDAGYFTCSKTMPGSLGHEEQDAKTFASWGIDYLKYDNCNNDGSKPTVRYPVMTRALMKA 200 (412)
T ss_pred CcHHHHHHHHHHCCCceEEEecCCccccCCCCCCchHHHHHHHHHHHhcCCCEEeccccCCCCcchhHHHHHHHHHHHHh
Confidence 469999999999999984 21111 22345567789999999877321 1 2 255778889
Q ss_pred CCcEEEeC
Q psy17999 106 QKPLIIST 113 (335)
Q Consensus 106 gkPvilSt 113 (335)
|+||++|.
T Consensus 201 GRpI~~Sl 208 (412)
T PLN02692 201 GRPIFFSL 208 (412)
T ss_pred CCCeEEEe
Confidence 99999984
No 401
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=71.16 E-value=94 Score=29.34 Aligned_cols=84 Identities=15% Similarity=0.050 Sum_probs=56.2
Q ss_pred hcCCHHHHHHHHHHHHHc---CCceEeccCCh---hhH---HHHHhCCCCEEEEcCCCC---CCHHHHH---HHHh-cCC
Q psy17999 44 LEFSQEEYVMLQQCADQV---DIMFTASAMDQ---VSF---DFLLSANVPFIKIGSGDS---NNIPLIK---YAAS-KQK 107 (335)
Q Consensus 44 ~el~~e~~~~L~~~~~~~---Gi~f~stpfd~---~sv---d~l~~l~v~~~KIaS~d~---~n~~LL~---~~a~-~gk 107 (335)
..|+.++..++.+.+.+. .++++..+-.. +++ ..+.++|++.+-+..... +.-.+++ ++++ +++
T Consensus 48 ~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~~~~a~~a~~~G~d~v~~~~P~~~~~~~~~l~~~~~~ia~~~~~ 127 (284)
T cd00950 48 PTLSDEEHEAVIEAVVEAVNGRVPVIAGTGSNNTAEAIELTKRAEKAGADAALVVTPYYNKPSQEGLYAHFKAIAEATDL 127 (284)
T ss_pred hhCCHHHHHHHHHHHHHHhCCCCcEEeccCCccHHHHHHHHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHhcCCC
Confidence 458999999888876665 46666665442 333 455678999888876543 2334444 4555 589
Q ss_pred cEEEe-----CCCCCCHHHHHHHHH
Q psy17999 108 PLIIS-----TGMLPSIEHVDNIYT 127 (335)
Q Consensus 108 PvilS-----tG~~~tl~Ei~~Av~ 127 (335)
||+|= ||...+.+.+.+.++
T Consensus 128 pi~lYn~P~~~g~~ls~~~~~~L~~ 152 (284)
T cd00950 128 PVILYNVPGRTGVNIEPETVLRLAE 152 (284)
T ss_pred CEEEEEChhHhCCCCCHHHHHHHhc
Confidence 99985 677778888876653
No 402
>PF05853 DUF849: Prokaryotic protein of unknown function (DUF849); InterPro: IPR008567 This family consists of several hypothetical prokaryotic proteins with no known function.; PDB: 3C6C_A 2Y7G_B 2Y7F_B 2Y7D_D 2Y7E_B 3LOT_A 3FA5_B 3NO5_C 3E02_A 3E49_B ....
Probab=70.94 E-value=3.1 Score=39.91 Aligned_cols=54 Identities=30% Similarity=0.372 Sum_probs=36.9
Q ss_pred HCCCCCeecCCCCCC--hHHHHHHHHcCCcEEEeccCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q psy17999 186 RYPDIPIGYSGHENG--VHVCYAAVAMGAQIIEKHFTLDKSWKGSDHASSLTPPELKALVTGIRDI 249 (335)
Q Consensus 186 ~fp~~pVG~SdHt~g--~~~~~aAvalGA~vIEkH~tld~~~~G~Dh~~Sl~p~el~~lv~~ir~~ 249 (335)
..|++|+ |.. ...+++++..||.+|=-|.-.| .|...|++|+.+++.++.||+.
T Consensus 17 ~~P~lP~-----tpeEia~~A~~c~~AGAa~vH~H~R~~-----~~G~~s~d~~~~~e~~~~IR~~ 72 (272)
T PF05853_consen 17 DNPALPI-----TPEEIAADAVACYEAGAAIVHIHARDD-----EDGRPSLDPELYAEVVEAIRAA 72 (272)
T ss_dssp TSTTS-------SHHHHHHHHHHHHHHTESEEEE-EE-T-----TTS-EE--HHHHHHHHHHHHHH
T ss_pred cCCCCCC-----CHHHHHHHHHHHHHcCCcEEEeecCCC-----CCCCcCCCHHHHHHHHHHHHHH
Confidence 3566666 333 4557889999999999997722 2666899999999999999987
No 403
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=70.91 E-value=40 Score=31.04 Aligned_cols=118 Identities=18% Similarity=0.212 Sum_probs=74.2
Q ss_pred ceEeccCChhhHHHHHhCCCCEEEEcCCCCC----CHHHHHHHHhcCCcEEEeCCCCCCHHHHHHHHHHHHhcCCCCcee
Q psy17999 64 MFTASAMDQVSFDFLLSANVPFIKIGSGDSN----NIPLIKYAASKQKPLIISTGMLPSIEHVDNIYTTVKQYHSNLSIL 139 (335)
Q Consensus 64 ~f~stpfd~~svd~l~~l~v~~~KIaS~d~~----n~~LL~~~a~~gkPvilStG~~~tl~Ei~~Av~~i~~g~~~~~~~ 139 (335)
.++.||. .+.++.|.+.|++++=+-.+.=. =..|++++-+.+ +++----+ |++|-..|.+. |.. -|-
T Consensus 47 ~V~ITPT-~~ev~~l~~aGadIIAlDaT~R~Rp~~l~~li~~i~~~~--~l~MADis-t~ee~~~A~~~---G~D--~I~ 117 (192)
T PF04131_consen 47 DVYITPT-LKEVDALAEAGADIIALDATDRPRPETLEELIREIKEKY--QLVMADIS-TLEEAINAAEL---GFD--IIG 117 (192)
T ss_dssp S--BS-S-HHHHHHHHHCT-SEEEEE-SSSS-SS-HHHHHHHHHHCT--SEEEEE-S-SHHHHHHHHHT---T-S--EEE
T ss_pred CeEECCC-HHHHHHHHHcCCCEEEEecCCCCCCcCHHHHHHHHHHhC--cEEeeecC-CHHHHHHHHHc---CCC--EEE
Confidence 4556664 35678888899999988765433 456788887777 33333345 88888887653 433 222
Q ss_pred ecccCCCCCCCCcccccCceEEeeecCCCCCCccCCCchHHHHHHHHCCCCCeecCCCCCChHHHHHHHHcCCc
Q psy17999 140 HCVSAYPTPYPTVKQYHSNLSILHCVSAYPTPYHDINLNVIHTLRSRYPDIPIGYSGHENGVHVCYAAVAMGAQ 213 (335)
Q Consensus 140 ~c~~g~~~~~~~~~~~~~~l~llHC~s~YP~~~~~~nL~~i~~L~~~fp~~pVG~SdHt~g~~~~~aAvalGA~ 213 (335)
..-+|| +.|... +..|+.-|..|.+. ++||.-=+|-..+..+..|..+||.
T Consensus 118 TTLsGY--------------------T~~t~~-~~pD~~lv~~l~~~--~~pvIaEGri~tpe~a~~al~~GA~ 168 (192)
T PF04131_consen 118 TTLSGY--------------------TPYTKG-DGPDFELVRELVQA--DVPVIAEGRIHTPEQAAKALELGAH 168 (192)
T ss_dssp -TTTTS--------------------STTSTT-SSHHHHHHHHHHHT--TSEEEEESS--SHHHHHHHHHTT-S
T ss_pred cccccC--------------------CCCCCC-CCCCHHHHHHHHhC--CCcEeecCCCCCHHHHHHHHhcCCe
Confidence 223333 345555 77889999999974 7898666777778889999999998
No 404
>PRK06245 cofG FO synthase subunit 1; Reviewed
Probab=70.76 E-value=1.1e+02 Score=29.82 Aligned_cols=130 Identities=15% Similarity=0.109 Sum_probs=63.8
Q ss_pred HHHHHHHhcCCcEE--EeCCCCCCHHHHHHHHHHHHh-cCCCCceeecccCCCCCCCCcccccCceEEeeecCCCCCCcc
Q psy17999 97 PLIKYAASKQKPLI--ISTGMLPSIEHVDNIYTTVKQ-YHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYPTPYH 173 (335)
Q Consensus 97 ~LL~~~a~~gkPvi--lStG~~~tl~Ei~~Av~~i~~-g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~s~YP~~~~ 173 (335)
..++.+.+.|.++. +-.|..-|.+++..-+..++. ......+ .+=+..++.|.+.- ++ ...|.+..
T Consensus 157 ~~i~~a~~~Gi~~~~~~i~G~gEt~ed~~~~l~~l~~l~~~~gg~---~~~~~~~f~P~~~T--~~------~~~~~~s~ 225 (336)
T PRK06245 157 ETIENAGKLKIPFTTGILIGIGETWEDRAESLEAIAELHERYGHI---QEVIIQNFSPKPGI--PM------ENHPEPSL 225 (336)
T ss_pred HHHHHHHHcCCceeeeeeeECCCCHHHHHHHHHHHHHHHHhhCCC---cEEecCCCcCCCCC--Cc------ccCCCcCH
Confidence 44555666788863 446656688998887666654 2110000 00001111111000 00 01121222
Q ss_pred CCCchHHHHHHHHCCC-CCeecCCCCCChHHHHHHHHcCCcEE-----E--eccCCCCCCCCCCCCCCCCHHHHHHHHHH
Q psy17999 174 DINLNVIHTLRSRYPD-IPIGYSGHENGVHVCYAAVAMGAQII-----E--KHFTLDKSWKGSDHASSLTPPELKALVTG 245 (335)
Q Consensus 174 ~~nL~~i~~L~~~fp~-~pVG~SdHt~g~~~~~aAvalGA~vI-----E--kH~tld~~~~G~Dh~~Sl~p~el~~lv~~ 245 (335)
+-.++.+...|..+|+ +.+- +.-..|......+...||+-+ | -+++.. + .-.+++++.+++++
T Consensus 226 ~e~l~~ia~~Rl~l~~~i~i~-~~~~~~~~~~~~~L~~Gand~~g~~~~~~~~~~~~----~----~~~~~~~~~~~i~~ 296 (336)
T PRK06245 226 EEMLRVVALARLILPPDISIQ-VPPNLNRDTGLLLLDAGADDLGGISPVTKDYVNPE----Y----PWPDIEELREILEE 296 (336)
T ss_pred HHHHHHHHHHHHHCCCCceEe-cCCccchHHHHHHHhcCCccccCCccCCCceeCCC----C----CCCCHHHHHHHHHH
Confidence 2335556666776753 2221 123667777778899999855 3 233321 1 12467888887766
Q ss_pred H
Q psy17999 246 I 246 (335)
Q Consensus 246 i 246 (335)
+
T Consensus 297 ~ 297 (336)
T PRK06245 297 A 297 (336)
T ss_pred c
Confidence 4
No 405
>cd00717 URO-D Uroporphyrinogen decarboxylase (URO-D) is a dimeric cytosolic enzyme that decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, without requiring any prosthetic groups or cofactors. This reaction is located at the branching point of the tetrapyrrole biosynthetic pathway, leading to the biosynthesis of heme, chlorophyll or bacteriochlorophyll. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP).
Probab=70.66 E-value=33 Score=33.27 Aligned_cols=81 Identities=5% Similarity=-0.013 Sum_probs=50.0
Q ss_pred CCHHHHHHHHHHHHHc--CCce--EeccCChhhHHHHHhCCCCEEEEcCCCCCCHHHHHHHHhcCCcEEEeCCCC-----
Q psy17999 46 FSQEEYVMLQQCADQV--DIMF--TASAMDQVSFDFLLSANVPFIKIGSGDSNNIPLIKYAASKQKPLIISTGML----- 116 (335)
Q Consensus 46 l~~e~~~~L~~~~~~~--Gi~f--~stpfd~~svd~l~~l~v~~~KIaS~d~~n~~LL~~~a~~gkPvilStG~~----- 116 (335)
+...-++++.+..++. |+.+ +|.- ...-++.+.+++++.+-+... .++ -+.....|.-++|.-+..
T Consensus 212 f~~P~~k~i~~~i~~~~~~~~ilh~cg~-~~~~~~~~~~~~~~~~s~d~~--~dl--~e~k~~~g~~~~i~Gni~p~~l~ 286 (335)
T cd00717 212 FVLPYLKRIIEEVKKRLPGVPVILFAKG-AGGLLEDLAQLGADVVGLDWR--VDL--DEARKRLGPKVALQGNLDPALLY 286 (335)
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEcCC-CHHHHHHHHhcCCCEEEeCCC--CCH--HHHHHHhCCCeEEEeCCChhhhc
Confidence 4456678888998887 5433 4553 335688889999998866654 343 333333443333333322
Q ss_pred CCHHHHHHHHHHHHh
Q psy17999 117 PSIEHVDNIYTTVKQ 131 (335)
Q Consensus 117 ~tl~Ei~~Av~~i~~ 131 (335)
.+.+||.+.+..+..
T Consensus 287 ~~~e~i~~~v~~~l~ 301 (335)
T cd00717 287 APKEAIEKEVKRILK 301 (335)
T ss_pred CCHHHHHHHHHHHHH
Confidence 256889988876665
No 406
>cd06317 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Pperiplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=70.66 E-value=81 Score=28.36 Aligned_cols=64 Identities=19% Similarity=0.205 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHcCCceEeccC--Chhh----HHHHHhCCCCEEEEcCCCCC-CHHHHHHHHhcCCcEEEe
Q psy17999 49 EEYVMLQQCADQVDIMFTASAM--DQVS----FDFLLSANVPFIKIGSGDSN-NIPLIKYAASKQKPLIIS 112 (335)
Q Consensus 49 e~~~~L~~~~~~~Gi~f~stpf--d~~s----vd~l~~l~v~~~KIaS~d~~-n~~LL~~~a~~gkPvilS 112 (335)
.-+..+.+.+++.|+.++.... +.+. ++.+...++|.+-|.+.+.. ..+.++.+.+.+.|+++.
T Consensus 17 ~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~~~~~~l~~~~~~~iPvV~~ 87 (275)
T cd06317 17 TYNKAFQAAAEEDGVEVIVLDANGDVARQAAQVEDLIAQKVDGIILWPTDGQAYIPGLRKAKQAGIPVVIT 87 (275)
T ss_pred HHHHHHHHHHHhcCCEEEEEcCCcCHHHHHHHHHHHHHcCCCEEEEecCCccccHHHHHHHHHCCCcEEEe
Confidence 3455666777778887766443 3332 34455568999988776543 257888888899999875
No 407
>PLN02444 HMP-P synthase
Probab=70.59 E-value=32 Score=36.70 Aligned_cols=139 Identities=19% Similarity=0.204 Sum_probs=90.8
Q ss_pred CCHHHHHHHHHHHHHcCCceE----------eccCChhhHHHHHhCCCCEEEEcCCCCCCHHHHHHHHhcCCcEEEeCCC
Q psy17999 46 FSQEEYVMLQQCADQVDIMFT----------ASAMDQVSFDFLLSANVPFIKIGSGDSNNIPLIKYAASKQKPLIISTGM 115 (335)
Q Consensus 46 l~~e~~~~L~~~~~~~Gi~f~----------stpfd~~svd~l~~l~v~~~KIaS~d~~n~~LL~~~a~~gkPvilStG~ 115 (335)
+-.+.|.+|.+.|+++++.+. ...-|..++..|.-+ -.|.+.+-+.|.-|++.-.+
T Consensus 358 PlYe~FD~ileI~k~YDVtlSLGDGLRPG~iaDA~D~AQ~~EL~tL--------------GELtkrA~e~gVQVMIEGPG 423 (642)
T PLN02444 358 FAYEHWDDILDICNQYDIALSIGDGLRPGSIYDANDTAQFAELLTQ--------------GELTRRAWEKDVQVMNEGPG 423 (642)
T ss_pred chHHHHHHHHHHHHHhCeeeeccCCcCCCccccCCcHHHHHHHHHH--------------HHHHHHHHHcCCeEEEECCC
Confidence 556889999999999999875 345555555555544 47788888889999999877
Q ss_pred CCCHHHHHHHHHHHHhcCCCCceeecccCCCCCCCCcccccCceEEeeecCCCCCCccCCCchHHHHHHHHCCCCCeecC
Q psy17999 116 LPSIEHVDNIYTTVKQYHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYPTPYHDINLNVIHTLRSRYPDIPIGYS 195 (335)
Q Consensus 116 ~~tl~Ei~~Av~~i~~g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~s~YP~~~~~~nL~~i~~L~~~fp~~pVG~S 195 (335)
+..+.+|..-++..++-+. .. ++ |- |.=+. + ++-.||
T Consensus 424 HVPl~~I~~Nv~lqk~lC~--------~A-------------Pf--------Yv-------LGPLv-----T-DIAPGY- 460 (642)
T PLN02444 424 HVPLHKIPENMQKQLEWCN--------EA-------------PF--------YT-------LGPLT-----T-DIAPGY- 460 (642)
T ss_pred cCcHHHHHHHHHHHHHhhC--------CC-------------Cc--------ee-------cCCcc-----c-ccCCCc-
Confidence 7799999999887665222 00 12 11 11111 2 555677
Q ss_pred CCCCChHHHHHHHHcCCcEEEeccCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q psy17999 196 GHENGVHVCYAAVAMGAQIIEKHFTLDKSWKGSDHASSLTPPELKALVTGIRD 248 (335)
Q Consensus 196 dHt~g~~~~~aAvalGA~vIEkH~tld~~~~G~Dh~~Sl~p~el~~lv~~ir~ 248 (335)
||..+.--+..|...||++|= -+|+--.+.-|| +++.++=|-.-|-
T Consensus 461 DHItsAIGaAiaa~~GadfLC-YVTPaEHLgLP~------~eDVreGVIA~KI 506 (642)
T PLN02444 461 DHITSAIGAANIGALGTALLC-YVTPKEHLGLPN------RDDVKAGVIAYKI 506 (642)
T ss_pred hHHHHHHHHHHHHHcCCCeEE-ecChHHHcCCCC------HHHHHHHHHHHHH
Confidence 888774444456678999663 466654333333 6666665554444
No 408
>PF00856 SET: SET domain; InterPro: IPR001214 The SET domain appears generally as one part of a larger multidomain protein, and recently there were described three structures of very different proteins with distinct domain compositions: Neurospora crassa DIM-5, a member of the Su(var) family of HKMTs which methylate histone H3 on lysine 9,human SET7 (also called SET9), which methylates H3 on lysine 4 and garden pea Rubisco LSMT, an enzyme that does not modify histones, but instead methylates lysine 14 in the flexible tail of the large subunit of the enzyme Rubisco. The SET domain itself turned out to be an uncommon structure. Although in all three studies, electron density maps revealed the location of the AdoMet or AdoHcy cofactor, the SET domain bears no similarity at all to the canonical/AdoMet-dependent methyltransferase fold. Strictly conserved in the C-terminal motif of the SET domain tyrosine could be involved in abstracting a proton from the protonated amino group of the substrate lysine, promoting its nucleophilic attack on the sulphonium methyl group of the AdoMet cofactor. In contrast to the AdoMet-dependent protein methyltranferases of the classical type, which tend to bind their polypeptide substrates on top of the cofactor, it is noted from the Rubisco LSMT structure that the AdoMet seems to bind in a separate cleft, suggesting how a polypeptide substrate could be subjected to multiple rounds of methylation without having to be released from the enzyme. In contrast, SET7/9 is able to add only a single methyl group to its substrate. It has been demonstrated that association of SET domain and myotubularin-related proteins modulates growth control []. The SET domain-containing Drosophila melanogaster (Fruit fly) protein, enhancer of zeste, has a function in segment determination and the mammalian homologue may be involved in the regulation of gene transcription and chromatin structure. Histone lysine methylation is part of the histone code that regulated chromatin function and epigenetic control of gene function. Histone lysine methyltransferases (HMTase) differ both in their substrate specificity for the various acceptor lysines as well as in their product specificity for the number of methyl groups (one, two, or three) they transfer. With just one exception [], the HMTases belong to SET family that can be classified according to the sequences surrounding the SET domain [, ]. Structural studies on the human SET7/9, a mono-methylase, have revealed the molecular basis for the specificity of the enzyme for the histone-target and the roles of the invariant residues in the SET domain in determining the methylation specificities []. The pre-SET domain, as found in the SUV39 SET family, contains nine invariant cysteine residues that are grouped into two segments separated by a region of variable length. These 9 cysteines coordinate 3 zinc ions to form to form a triangular cluster, where each of the zinc ions is coordinated by 4 four cysteines to give a tetrahedral configuration. The function of this domain is structural, holding together 2 long segments of random coils. The C-terminal region including the post-SET domain is disordered when not interacting with a histone tail and in the absence of zinc. The three conserved cysteines in the post-SET domain form a zinc-binding site when coupled to a fourth conserved cysteine in the knot-like structure close to the SET domain active site []. The structured post-SET region brings in the C-terminal residues that participate in S-adenosylmethine-binding and histone tail interactions. The three conserved cysteine residues are essential for HMTase activity, as replacement with serine abolishes HMTase activity [], []. ; GO: 0005515 protein binding; PDB: 3TG5_A 3S7F_A 3RIB_B 3TG4_A 3S7J_A 3S7D_A 3S7B_A 3H6L_A 3SMT_A 3K5K_A ....
Probab=70.54 E-value=2.1 Score=35.11 Aligned_cols=16 Identities=38% Similarity=0.748 Sum_probs=12.6
Q ss_pred ceEEEEeecCCCCccc
Q psy17999 272 GKCIVSSCDIQAGTVL 287 (335)
Q Consensus 272 rrsl~a~~di~~G~~l 287 (335)
+|+|+|++||++|++|
T Consensus 1 GrGl~At~dI~~Ge~I 16 (162)
T PF00856_consen 1 GRGLFATRDIKAGEVI 16 (162)
T ss_dssp SEEEEESS-B-TTEEE
T ss_pred CEEEEECccCCCCCEE
Confidence 5899999999999966
No 409
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=70.49 E-value=42 Score=33.26 Aligned_cols=80 Identities=15% Similarity=0.206 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHcCCc-eEec-cCChhhHHHHHhCCCCEEEEcC--CC-----------CCCH--HHHHHHHh-cCCcE
Q psy17999 48 QEEYVMLQQCADQVDIM-FTAS-AMDQVSFDFLLSANVPFIKIGS--GD-----------SNNI--PLIKYAAS-KQKPL 109 (335)
Q Consensus 48 ~e~~~~L~~~~~~~Gi~-f~st-pfd~~svd~l~~l~v~~~KIaS--~d-----------~~n~--~LL~~~a~-~gkPv 109 (335)
...+..++...+..... ++.- +-+.+.+..|.+.|++.++|+- +- ...| ..|..+++ .+.||
T Consensus 122 ~~~~~~i~~i~~~~p~~~vi~GnV~t~e~a~~l~~aGad~I~V~~G~G~~~~tr~~~g~g~~~~~l~ai~ev~~a~~~pV 201 (321)
T TIGR01306 122 NSVINMIKHIKTHLPDSFVIAGNVGTPEAVRELENAGADATKVGIGPGKVCITKIKTGFGTGGWQLAALRWCAKAARKPI 201 (321)
T ss_pred HHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHcCcCEEEECCCCCccccceeeeccCCCchHHHHHHHHHHhcCCeE
Confidence 45566777777777544 5555 7899999999999999999981 22 1122 23444444 47899
Q ss_pred EEeCCCCCCHHHHHHHHHH
Q psy17999 110 IISTGMLPSIEHVDNIYTT 128 (335)
Q Consensus 110 ilStG~~~tl~Ei~~Av~~ 128 (335)
|.+-|.. +-.+|.+|+..
T Consensus 202 IadGGIr-~~~Di~KALa~ 219 (321)
T TIGR01306 202 IADGGIR-THGDIAKSIRF 219 (321)
T ss_pred EEECCcC-cHHHHHHHHHc
Confidence 9999999 99999888653
No 410
>PRK08210 aspartate kinase I; Reviewed
Probab=70.45 E-value=51 Score=33.02 Aligned_cols=32 Identities=19% Similarity=0.185 Sum_probs=23.4
Q ss_pred EEEEcCCCCCCHHHHHHHHh-------c-CCcEEEeCCCC
Q psy17999 85 FIKIGSGDSNNIPLIKYAAS-------K-QKPLIISTGML 116 (335)
Q Consensus 85 ~~KIaS~d~~n~~LL~~~a~-------~-gkPvilStG~~ 116 (335)
.+|+|+.-+++...++.+++ . .+||++..||+
T Consensus 5 ViK~GGs~l~~~~~~~~~~~~i~~~~~~g~~~vvV~sa~g 44 (403)
T PRK08210 5 VQKFGGTSVSTEERRKMAVNKIKKALKEGYKVVVVVSAMG 44 (403)
T ss_pred EEeECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCC
Confidence 68999999998877766553 2 35788886765
No 411
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=70.43 E-value=15 Score=38.87 Aligned_cols=52 Identities=21% Similarity=0.284 Sum_probs=43.1
Q ss_pred HHHHHhCCCCEEEEcCCCC------CCHHHHHHHHh-cCCcEEEeCCCCCCHHHHHHHHH
Q psy17999 75 FDFLLSANVPFIKIGSGDS------NNIPLIKYAAS-KQKPLIISTGMLPSIEHVDNIYT 127 (335)
Q Consensus 75 vd~l~~l~v~~~KIaS~d~------~n~~LL~~~a~-~gkPvilStG~~~tl~Ei~~Av~ 127 (335)
+..++++|+.-|-+-|-|- .|++|++.+++ .+.|||.|-|.+ +++++.++++
T Consensus 444 ~~~~~~~Gageil~t~id~DGt~~G~d~~l~~~v~~~~~ipviasGG~g-~~~d~~~~~~ 502 (538)
T PLN02617 444 AKAVEELGAGEILLNCIDCDGQGKGFDIELVKLVSDAVTIPVIASSGAG-TPEHFSDVFS 502 (538)
T ss_pred HHHHHhcCCCEEEEeeccccccccCcCHHHHHHHHhhCCCCEEEECCCC-CHHHHHHHHh
Confidence 4566678888888877765 38999998887 489999999999 9999998765
No 412
>PRK05826 pyruvate kinase; Provisional
Probab=70.24 E-value=36 Score=35.37 Aligned_cols=87 Identities=21% Similarity=0.193 Sum_probs=65.1
Q ss_pred CHHHHHHHHHHHHHcC---CceEeccCChhhHHHHH---hCCCCEEEEcCCCCCC-----------HHHHHHHHhcCCcE
Q psy17999 47 SQEEYVMLQQCADQVD---IMFTASAMDQVSFDFLL---SANVPFIKIGSGDSNN-----------IPLIKYAASKQKPL 109 (335)
Q Consensus 47 ~~e~~~~L~~~~~~~G---i~f~stpfd~~svd~l~---~l~v~~~KIaS~d~~n-----------~~LL~~~a~~gkPv 109 (335)
+.++.+.+.+|..+.| +.+++-.-+.++++-++ +. +|.+-||-+||.- -.+++.+-+.|||+
T Consensus 197 saedv~~l~~~l~~~~~~~~~iiakIEt~eav~nldeI~~~-~DgImIgrgDLg~elg~~~v~~~qk~Ii~~c~~~gKpv 275 (465)
T PRK05826 197 SAEDVEEARRLLREAGCPHAKIIAKIERAEAVDNIDEIIEA-SDGIMVARGDLGVEIPDEEVPGLQKKIIRKAREAGKPV 275 (465)
T ss_pred CHHHHHHHHHHHHHcCCcCceEEEEEcCHHHHHhHHHHHHH-cCEEEECcchhhhhcCcHhHHHHHHHHHHHHHHcCCCE
Confidence 6788888899988764 66777777777765554 45 8999999998764 22334455579999
Q ss_pred EEeCCC--------CCCHHHHHHHHHHHHhcCC
Q psy17999 110 IISTGM--------LPSIEHVDNIYTTVKQYHS 134 (335)
Q Consensus 110 ilStG~--------~~tl~Ei~~Av~~i~~g~~ 134 (335)
|+.|=| .||-+|+-..++.+..|..
T Consensus 276 i~ATqmLeSM~~~p~PTRAEvsDVanav~dG~D 308 (465)
T PRK05826 276 ITATQMLESMIENPRPTRAEVSDVANAVLDGTD 308 (465)
T ss_pred EEECHHHHHHhhCCCCchhhhhhHHHHHHcCCc
Confidence 998753 4699999999998887654
No 413
>PLN02808 alpha-galactosidase
Probab=70.20 E-value=12 Score=38.08 Aligned_cols=74 Identities=11% Similarity=0.116 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHcCCceE---------eccCC-------hhhHHHHHhCCCCEEEEcCCCCCC------H-HHHHHHHhc
Q psy17999 49 EEYVMLQQCADQVDIMFT---------ASAMD-------QVSFDFLLSANVPFIKIGSGDSNN------I-PLIKYAASK 105 (335)
Q Consensus 49 e~~~~L~~~~~~~Gi~f~---------stpfd-------~~svd~l~~l~v~~~KIaS~d~~n------~-~LL~~~a~~ 105 (335)
..++.|.+|++++|+.|- |...- +..++...+-|||++|+-.+.... + -+-+++.++
T Consensus 97 ~G~~~lad~iH~~GlkfGiy~~~G~~tC~~~~pGs~~~e~~DA~~fA~WGvDylK~D~C~~~~~~~~~~y~~m~~AL~~t 176 (386)
T PLN02808 97 SGIKALADYVHSKGLKLGIYSDAGTLTCSKTMPGSLGHEEQDAKTFASWGIDYLKYDNCENTGTSPQERYPKMSKALLNS 176 (386)
T ss_pred ccHHHHHHHHHHCCCceEEEecCCccccCCCCCcchHHHHHHHHHHHHhCCCEEeecCcCCCCccHHHHHHHHHHHHHHh
Confidence 469999999999999984 21111 233556678899999998774332 1 244667789
Q ss_pred CCcEEEeC---CCCCCHHHHH
Q psy17999 106 QKPLIIST---GMLPSIEHVD 123 (335)
Q Consensus 106 gkPvilSt---G~~~tl~Ei~ 123 (335)
|+||++|. |.. +..++.
T Consensus 177 GRpi~~slc~wg~~-~p~~w~ 196 (386)
T PLN02808 177 GRPIFFSLCEWGQE-DPATWA 196 (386)
T ss_pred CCCeEEEecCCCCC-CHHHHH
Confidence 99999884 444 554543
No 414
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=70.00 E-value=80 Score=28.47 Aligned_cols=64 Identities=13% Similarity=0.096 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHcCCceEe--ccCChhh----HHHHHhCCCCEEEEcCCCCCCHHHHHHHHhcCCcEEEe
Q psy17999 48 QEEYVMLQQCADQVDIMFTA--SAMDQVS----FDFLLSANVPFIKIGSGDSNNIPLIKYAASKQKPLIIS 112 (335)
Q Consensus 48 ~e~~~~L~~~~~~~Gi~f~s--tpfd~~s----vd~l~~l~v~~~KIaS~d~~n~~LL~~~a~~gkPvilS 112 (335)
.+-+..+.+.|++.|..+.. +.+|.+. ++.+.+-++|.+-+.+.+.. .+.++++.+.|.|+++-
T Consensus 15 ~~~~~g~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgii~~~~~~~-~~~~~~~~~~~ipvV~~ 84 (268)
T cd06270 15 GPLLSGVESVARKAGKHLIITAGHHSAEKEREAIEFLLERRCDALILHSKALS-DDELIELAAQVPPLVLI 84 (268)
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCchHHHHHHHHHHHHcCCCEEEEecCCCC-HHHHHHHhhCCCCEEEE
Confidence 35566778899999888665 3444432 34455567999888766543 45588888889998663
No 415
>cd04260 AAK_AKi-DapG-BS AAK_AKi-DapG-BS: Amino Acid Kinase Superfamily (AAK), AKi-DapG; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional class enzyme found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species. In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and two bet
Probab=69.87 E-value=96 Score=28.90 Aligned_cols=31 Identities=19% Similarity=0.307 Sum_probs=22.2
Q ss_pred EEEEcCCCCCCHHHHHHHHh-------cC-CcEEEeCCC
Q psy17999 85 FIKIGSGDSNNIPLIKYAAS-------KQ-KPLIISTGM 115 (335)
Q Consensus 85 ~~KIaS~d~~n~~LL~~~a~-------~g-kPvilStG~ 115 (335)
.+|+|..-+.|-..++.+++ .| +||+++.||
T Consensus 3 ViK~GGs~l~~~~~~~~~~~~I~~~~~~g~~~vvV~sa~ 41 (244)
T cd04260 3 VQKFGGTSVSTKERREQVAKKVKQAVDEGYKPVVVVSAM 41 (244)
T ss_pred EEEECchhcCCHHHHHHHHHHHHHHHHCCCCeEEEEECC
Confidence 58999999999776666553 23 578888644
No 416
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=69.82 E-value=28 Score=31.72 Aligned_cols=64 Identities=16% Similarity=0.228 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHcCCceEeccC--Chh----hHHHHHhCCCCEEEEcCCCCCC-HHHHHHHHhcCCcEEEe
Q psy17999 49 EEYVMLQQCADQVDIMFTASAM--DQV----SFDFLLSANVPFIKIGSGDSNN-IPLIKYAASKQKPLIIS 112 (335)
Q Consensus 49 e~~~~L~~~~~~~Gi~f~stpf--d~~----svd~l~~l~v~~~KIaS~d~~n-~~LL~~~a~~gkPvilS 112 (335)
.-+..+.+.++++|..++.... +.+ .++.+...++|.+-|.+.+... .++++++.+.|+||++-
T Consensus 16 ~~~~~i~~~~~~~g~~v~~~~~~~~~~~~~~~i~~~~~~~~Dgiii~~~~~~~~~~~i~~~~~~~iPvV~~ 86 (282)
T cd06318 16 ALTEAAKAHAKALGYELISTDAQGDLTKQIADVEDLLTRGVNVLIINPVDPEGLVPAVAAAKAAGVPVVVV 86 (282)
T ss_pred HHHHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEecCCccchHHHHHHHHHCCCCEEEe
Confidence 3466778889999998877554 322 2455666789999887766432 57888888889998754
No 417
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=69.64 E-value=1.2e+02 Score=29.90 Aligned_cols=74 Identities=16% Similarity=0.108 Sum_probs=40.6
Q ss_pred CCHHHHHHHHHHHHH-----cCCceEe--cc--CChhhHHHHHhCCCCEEEEcCCCCCCHHHHHHHHhcCCcEEEeCCCC
Q psy17999 46 FSQEEYVMLQQCADQ-----VDIMFTA--SA--MDQVSFDFLLSANVPFIKIGSGDSNNIPLIKYAASKQKPLIISTGML 116 (335)
Q Consensus 46 l~~e~~~~L~~~~~~-----~Gi~f~s--tp--fd~~svd~l~~l~v~~~KIaS~d~~n~~LL~~~a~~gkPvilStG~~ 116 (335)
|+.+++.+|.+..++ .++.+.. .| .+.+.++.+.++|+..+-|+=- ..|...|+.+++. .
T Consensus 65 l~~~~l~~ll~~i~~~~~~~~~~eitie~np~~lt~e~l~~l~~~Gv~risiGvq-S~~~~~l~~lgR~----------~ 133 (360)
T TIGR00539 65 LSVEAFERLFESIYQHASLSDDCEITTEANPELITAEWCKGLKGAGINRLSLGVQ-SFRDDKLLFLGRQ----------H 133 (360)
T ss_pred CCHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCCCCHHHHHHHHHcCCCEEEEecc-cCChHHHHHhCCC----------C
Confidence 556666666654432 2233332 22 5666667777777776666533 3334455555431 2
Q ss_pred CCHHHHHHHHHHHHh
Q psy17999 117 PSIEHVDNIYTTVKQ 131 (335)
Q Consensus 117 ~tl~Ei~~Av~~i~~ 131 (335)
+.+++.+|++.+++
T Consensus 134 -~~~~~~~ai~~l~~ 147 (360)
T TIGR00539 134 -SAKNIAPAIETALK 147 (360)
T ss_pred -CHHHHHHHHHHHHH
Confidence 66777777776664
No 418
>PLN02591 tryptophan synthase
Probab=69.64 E-value=1e+02 Score=29.25 Aligned_cols=164 Identities=19% Similarity=0.220 Sum_probs=87.9
Q ss_pred CCCCcEEEeecccccccccccccCCCCCCCCCCcc-cHHHHHHhhc--CCHHH-HHHHHHHHHHcCCc-eEeccCCh---
Q psy17999 1 ECGADCVKFQKSCLSTKFTQSALDRPYLSPHAWAN-TYGQHKQHLE--FSQEE-YVMLQQCADQVDIM-FTASAMDQ--- 72 (335)
Q Consensus 1 ~aGaDaVKFQ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~e--l~~e~-~~~L~~~~~~~Gi~-f~stpfd~--- 72 (335)
++|||++-.+. ||..|...|. .+....+.++ ++.++ +..+.+..++..++ ++-+=+.+
T Consensus 27 ~~Gad~iElGi--------------PfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~~~~r~~~~~p~ilm~Y~N~i~~ 92 (250)
T PLN02591 27 ACGADVIELGV--------------PYSDPLADGPVIQAAATRALEKGTTLDSVISMLKEVAPQLSCPIVLFTYYNPILK 92 (250)
T ss_pred HCCCCEEEECC--------------CCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEEEEecccHHHH
Confidence 46888888876 3444433332 2222223332 44444 44555555555655 23333332
Q ss_pred hh----HHHHHhCCCCEEEEcCCCCC---CHHHHHHHHhcCCc-EEEeCCCCCCHHHHHHHHHHHHhcCCCCceeecccC
Q psy17999 73 VS----FDFLLSANVPFIKIGSGDSN---NIPLIKYAASKQKP-LIISTGMLPSIEHVDNIYTTVKQYHSNLSILHCVSA 144 (335)
Q Consensus 73 ~s----vd~l~~l~v~~~KIaS~d~~---n~~LL~~~a~~gkP-vilStG~~~tl~Ei~~Av~~i~~g~~~~~~~~c~~g 144 (335)
.. ++.+.+.|++.+-|+ |+- .-++.+++.+.|.. |.+-+.-+ +.+.+..+.+. ..
T Consensus 93 ~G~~~F~~~~~~aGv~Gviip--DLP~ee~~~~~~~~~~~gl~~I~lv~Ptt-~~~ri~~ia~~----~~---------- 155 (250)
T PLN02591 93 RGIDKFMATIKEAGVHGLVVP--DLPLEETEALRAEAAKNGIELVLLTTPTT-PTERMKAIAEA----SE---------- 155 (250)
T ss_pred hHHHHHHHHHHHcCCCEEEeC--CCCHHHHHHHHHHHHHcCCeEEEEeCCCC-CHHHHHHHHHh----CC----------
Confidence 12 456667899999998 443 33455566667865 44445555 55556665442 11
Q ss_pred CCCCCCCcccccCceEEeeecCCCCCCcc----CCCchH-HHHHHHHCCCCCe--ecCCCCCChHHHHHHHHcCCc
Q psy17999 145 YPTPYPTVKQYHSNLSILHCVSAYPTPYH----DINLNV-IHTLRSRYPDIPI--GYSGHENGVHVCYAAVAMGAQ 213 (335)
Q Consensus 145 ~~~~~~~~~~~~~~l~llHC~s~YP~~~~----~~nL~~-i~~L~~~fp~~pV--G~SdHt~g~~~~~aAvalGA~ 213 (335)
. .+-|+|.+.+.-. ..++.. +..+|+.. ++|| ||-=++ ..-...+..+||+
T Consensus 156 -------------g--FIY~Vs~~GvTG~~~~~~~~~~~~i~~vk~~~-~~Pv~vGFGI~~--~e~v~~~~~~GAD 213 (250)
T PLN02591 156 -------------G--FVYLVSSTGVTGARASVSGRVESLLQELKEVT-DKPVAVGFGISK--PEHAKQIAGWGAD 213 (250)
T ss_pred -------------C--cEEEeeCCCCcCCCcCCchhHHHHHHHHHhcC-CCceEEeCCCCC--HHHHHHHHhcCCC
Confidence 1 2356666654332 233444 77888865 8998 653332 3334456677787
No 419
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=69.47 E-value=1.1e+02 Score=29.66 Aligned_cols=78 Identities=15% Similarity=0.326 Sum_probs=51.6
Q ss_pred EEEcCCCCCCHHHHHHH----HhcCCcEEEeCCCCCCHHHHHHHHHHHHhcCCCCceeecccCCCCCCCCcccccCceEE
Q psy17999 86 IKIGSGDSNNIPLIKYA----ASKQKPLIISTGMLPSIEHVDNIYTTVKQYHSNLSILHCVSAYPTPYPTVKQYHSNLSI 161 (335)
Q Consensus 86 ~KIaS~d~~n~~LL~~~----a~~gkPvilStG~~~tl~Ei~~Av~~i~~g~~~~~~~~c~~g~~~~~~~~~~~~~~l~l 161 (335)
|=|++.++.|+..++.+ -+.+.||||.+..+ ..+- + +
T Consensus 18 yAV~AfN~~n~e~~~avi~AAee~~sPvIl~~~~~-~~~~-------~--~----------------------------- 58 (286)
T PRK08610 18 YAVGQYNLNNLEFTQAILEASQEENAPVILGVSEG-AARY-------M--S----------------------------- 58 (286)
T ss_pred ceEEEEEECCHHHHHHHHHHHHHHCCCEEEEcCcc-HHhh-------c--C-----------------------------
Confidence 55777788888777654 34699999998876 2111 0 0
Q ss_pred eeecCCCCCCccCCCchHHHHHHHHCCC--CCeec-CCCCCChHHHHHHHHcCCc
Q psy17999 162 LHCVSAYPTPYHDINLNVIHTLRSRYPD--IPIGY-SGHENGVHVCYAAVAMGAQ 213 (335)
Q Consensus 162 lHC~s~YP~~~~~~nL~~i~~L~~~fp~--~pVG~-SdHt~g~~~~~aAvalGA~ 213 (335)
+.+.+ ...+..+.+++ . +||.. =||......+..|+.+|.+
T Consensus 59 ---------~~~~~-~~~~~~~A~~~-~~~vPV~lHLDHg~~~e~i~~ai~~Gft 102 (286)
T PRK08610 59 ---------GFYTV-VKMVEGLMHDL-NITIPVAIHLDHGSSFEKCKEAIDAGFT 102 (286)
T ss_pred ---------cHHHH-HHHHHHHHHHc-CCCCCEEEECCCCCCHHHHHHHHHcCCC
Confidence 00000 22345556666 4 78865 5999999999999999987
No 420
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=69.30 E-value=24 Score=32.10 Aligned_cols=64 Identities=16% Similarity=0.214 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHcCCceEeccCC--hh----hHHHHHhCCCCEEEEcCCCCCC-HHHHHHHHhcCCcEEEe
Q psy17999 49 EEYVMLQQCADQVDIMFTASAMD--QV----SFDFLLSANVPFIKIGSGDSNN-IPLIKYAASKQKPLIIS 112 (335)
Q Consensus 49 e~~~~L~~~~~~~Gi~f~stpfd--~~----svd~l~~l~v~~~KIaS~d~~n-~~LL~~~a~~gkPvilS 112 (335)
+-+..+.+.|+++|+.++....+ .+ .++.+...++|.+-|.+.+.+. .+.++++.+.+.||++-
T Consensus 16 ~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~i~~~~~~~iPvV~~ 86 (273)
T cd06309 16 AETKSIKDAAEKRGFDLKFADAQQKQENQISAIRSFIAQGVDVIILAPVVETGWDPVLKEAKAAGIPVILV 86 (273)
T ss_pred HHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCccccchHHHHHHHHCCCCEEEE
Confidence 55778899999999998887653 21 1334445579999887766543 57888888889998764
No 421
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=69.19 E-value=40 Score=33.00 Aligned_cols=40 Identities=10% Similarity=0.177 Sum_probs=29.3
Q ss_pred cCCCchHHHHHHHHCCCCCee-c-CCCCCChHHHHHHHHcCCc
Q psy17999 173 HDINLNVIHTLRSRYPDIPIG-Y-SGHENGVHVCYAAVAMGAQ 213 (335)
Q Consensus 173 ~~~nL~~i~~L~~~fp~~pVG-~-SdHt~g~~~~~aAvalGA~ 213 (335)
..+++..|..+++.. ++||. | .+.-..+.-+..+..+||+
T Consensus 188 ~~~~~elL~ei~~~~-~iPVV~~AeGGI~TPedaa~vme~GAd 229 (293)
T PRK04180 188 LQAPYELVKEVAELG-RLPVVNFAAGGIATPADAALMMQLGAD 229 (293)
T ss_pred cCCCHHHHHHHHHhC-CCCEEEEEeCCCCCHHHHHHHHHhCCC
Confidence 468899999999988 89985 3 3544345555567789998
No 422
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=69.18 E-value=1.1e+02 Score=29.21 Aligned_cols=151 Identities=16% Similarity=0.178 Sum_probs=87.9
Q ss_pred hcCCHHHHHHHHHHHHHc--CCceEeccCCh-hh---HHHHHhCCCCEEEEcCCCC----CCHHH---HHHHHhcCCcEE
Q psy17999 44 LEFSQEEYVMLQQCADQV--DIMFTASAMDQ-VS---FDFLLSANVPFIKIGSGDS----NNIPL---IKYAASKQKPLI 110 (335)
Q Consensus 44 ~el~~e~~~~L~~~~~~~--Gi~f~stpfd~-~s---vd~l~~l~v~~~KIaS~d~----~n~~L---L~~~a~~gkPvi 110 (335)
..|+.++..++.+.+.+. ++.+-+...+. ++ +..++++|+|.+-+...-. ++-.+ .+.+++ +.||+
T Consensus 47 ~~Lt~eEr~~l~~~~~~~~~~vi~gvg~~~~~~ai~~a~~a~~~Gad~v~v~~P~y~~~~~~~~i~~yf~~v~~-~lpv~ 125 (279)
T cd00953 47 PSLSFQEKLELLKAYSDITDKVIFQVGSLNLEESIELARAAKSFGIYAIASLPPYYFPGIPEEWLIKYFTDISS-PYPTF 125 (279)
T ss_pred ccCCHHHHHHHHHHHHHHcCCEEEEeCcCCHHHHHHHHHHHHHcCCCEEEEeCCcCCCCCCHHHHHHHHHHHHh-cCCEE
Confidence 458999988888766553 23333322333 23 3455678999988744432 22334 455778 99999
Q ss_pred Ee-----CCCCCCHHHHHHHHHHHHhcCCCCceeecccCCCCCCCCcccccCceEEeeecCCCCCCccCCCchHHHHHHH
Q psy17999 111 IS-----TGMLPSIEHVDNIYTTVKQYHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYPTPYHDINLNVIHTLRS 185 (335)
Q Consensus 111 lS-----tG~~~tl~Ei~~Av~~i~~g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~s~YP~~~~~~nL~~i~~L~~ 185 (335)
|= ||...+.+.+.+.++. ++ +++-+-- ..-|+..+..+++
T Consensus 126 iYn~P~~tg~~l~~~~l~~L~~~----~p-----------------------~vvgiK~--------s~~d~~~~~~~~~ 170 (279)
T cd00953 126 IYNYPKATGYDINARMAKEIKKA----GG-----------------------DIIGVKD--------TNEDISHMLEYKR 170 (279)
T ss_pred EEeCccccCCCCCHHHHHHHHhc----CC-----------------------CEEEEEe--------CccCHHHHHHHHH
Confidence 74 7877777776655431 12 2222211 1345666666665
Q ss_pred HCCCCCeecCCCCCChHHHHHHHHcCCc-EEEeccCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q psy17999 186 RYPDIPIGYSGHENGVHVCYAAVAMGAQ-IIEKHFTLDKSWKGSDHASSLTPPELKALVTGIR 247 (335)
Q Consensus 186 ~fp~~pVG~SdHt~g~~~~~aAvalGA~-vIEkH~tld~~~~G~Dh~~Sl~p~el~~lv~~ir 247 (335)
..+++.| |+++. .....+..+||+ +|= ....+-|+.+.++.+..+
T Consensus 171 ~~~~~~v-~~G~d---~~~~~~l~~Ga~G~i~-------------~~~n~~P~~~~~l~~a~~ 216 (279)
T cd00953 171 LVPDFKV-YSGPD---SLIFSALRSGLDGSVA-------------AASNYLPEVFVKIKDHVA 216 (279)
T ss_pred hCCCeEE-EEccH---HHHHHHHHcCCCeEEe-------------chhhccHHHHHHHHHHHH
Confidence 5544444 55542 344567788987 431 234567888888877664
No 423
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=69.12 E-value=30 Score=31.42 Aligned_cols=64 Identities=16% Similarity=0.136 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHcCCceEe--ccCChh----hHHHHHhCCCCEEEEcCCCCCCHHHHHHHHhcCCcEEEe
Q psy17999 49 EEYVMLQQCADQVDIMFTA--SAMDQV----SFDFLLSANVPFIKIGSGDSNNIPLIKYAASKQKPLIIS 112 (335)
Q Consensus 49 e~~~~L~~~~~~~Gi~f~s--tpfd~~----svd~l~~l~v~~~KIaS~d~~n~~LL~~~a~~gkPvilS 112 (335)
+-+..+.+.+++.|..++. +..+.+ .++.+.+.+++.+-+.+.+....++++.+.+.+.||++=
T Consensus 16 ~~~~~i~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgii~~~~~~~~~~~~~~~~~~~ipvV~i 85 (269)
T cd06281 16 QLFSGAEDRLRAAGYSLLIANSLNDPERELEILRSFEQRRMDGIIIAPGDERDPELVDALASLDLPIVLL 85 (269)
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCCChHHHHHHHHHHHHcCCCEEEEecCCCCcHHHHHHHHhCCCCEEEE
Confidence 3455667888999988664 344443 345666678999888776655567888888889998664
No 424
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=69.09 E-value=52 Score=31.47 Aligned_cols=28 Identities=11% Similarity=0.135 Sum_probs=21.2
Q ss_pred CCcEEEeCCCCCCHHHHHHHHHHHHh-cCC
Q psy17999 106 QKPLIISTGMLPSIEHVDNIYTTVKQ-YHS 134 (335)
Q Consensus 106 gkPvilStG~~~tl~Ei~~Av~~i~~-g~~ 134 (335)
+.|||..+|.. +.+|..+..+..++ |-.
T Consensus 73 ~~~viagvg~~-~t~~ai~~a~~a~~~Gad 101 (293)
T PRK04147 73 KVKLIAQVGSV-NTAEAQELAKYATELGYD 101 (293)
T ss_pred CCCEEecCCCC-CHHHHHHHHHHHHHcCCC
Confidence 57999999987 78887777777766 543
No 425
>cd06293 PBP1_LacI_like_11 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=69.03 E-value=89 Score=28.19 Aligned_cols=85 Identities=8% Similarity=-0.009 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHcCCceEecc--CChh----hHHHHHhCCCCEEEEcCCCCCCHHHHHHHHhcCCcEEEeC-CCC-----
Q psy17999 49 EEYVMLQQCADQVDIMFTASA--MDQV----SFDFLLSANVPFIKIGSGDSNNIPLIKYAASKQKPLIIST-GML----- 116 (335)
Q Consensus 49 e~~~~L~~~~~~~Gi~f~stp--fd~~----svd~l~~l~v~~~KIaS~d~~n~~LL~~~a~~gkPvilSt-G~~----- 116 (335)
+-+..+.+.+++.|..++... .+.+ .++.+.+.++|.+-+.+.+.+ .+-++++.+.+.||++-- ...
T Consensus 16 ~~~~gi~~~~~~~gy~v~~~~~~~~~~~~~~~i~~~~~~~~dgiii~~~~~~-~~~~~~~~~~~~pvV~i~~~~~~~~~~ 94 (269)
T cd06293 16 ELADAVEEEADARGLSLVLCATRNRPERELTYLRWLDTNHVDGLIFVTNRPD-DGALAKLINSYGNIVLVDEDVPGAKVP 94 (269)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEeCCCCC-HHHHHHHHhcCCCEEEECCCCCCCCCC
Confidence 446677889999997655443 3343 245666778999999875544 455566666788877632 111
Q ss_pred ----CCHHHHHHHHHHHHh-cCC
Q psy17999 117 ----PSIEHVDNIYTTVKQ-YHS 134 (335)
Q Consensus 117 ----~tl~Ei~~Av~~i~~-g~~ 134 (335)
=..+-...|++.+.+ |..
T Consensus 95 ~V~~d~~~~~~~~~~~L~~~G~~ 117 (269)
T cd06293 95 KVFCDNEQGGRLATRHLARAGHR 117 (269)
T ss_pred EEEECCHHHHHHHHHHHHHCCCc
Confidence 023344566666665 544
No 426
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=68.95 E-value=15 Score=36.70 Aligned_cols=76 Identities=12% Similarity=0.104 Sum_probs=52.7
Q ss_pred HHHHHHHHHHcCCceEe-ccCChhhHHHHHhCCCCEEEEcCCCCC-------CHHHHHHHH---hcCCcEEEeCCCCCCH
Q psy17999 51 YVMLQQCADQVDIMFTA-SAMDQVSFDFLLSANVPFIKIGSGDSN-------NIPLIKYAA---SKQKPLIISTGMLPSI 119 (335)
Q Consensus 51 ~~~L~~~~~~~Gi~f~s-tpfd~~svd~l~~l~v~~~KIaS~d~~-------n~~LL~~~a---~~gkPvilStG~~~tl 119 (335)
|..|...++..+++++. .+++.+++..+.++|++.|-|+..-=+ -...|.++. ....|||++-|.. +-
T Consensus 214 w~~i~~~~~~~~~pvivKgv~~~~da~~~~~~G~~~i~vs~hGGr~~d~~~~~~~~L~~i~~~~~~~~~i~~dgGir-~g 292 (356)
T PF01070_consen 214 WDDIEWIRKQWKLPVIVKGVLSPEDAKRAVDAGVDGIDVSNHGGRQLDWGPPTIDALPEIRAAVGDDIPIIADGGIR-RG 292 (356)
T ss_dssp HHHHHHHHHHCSSEEEEEEE-SHHHHHHHHHTT-SEEEEESGTGTSSTTS-BHHHHHHHHHHHHTTSSEEEEESS---SH
T ss_pred HHHHHHHhcccCCceEEEecccHHHHHHHHhcCCCEEEecCCCcccCccccccccccHHHHhhhcCCeeEEEeCCCC-CH
Confidence 45577777789998876 569999999999999999999833222 122333333 3468999999998 88
Q ss_pred HHHHHHHH
Q psy17999 120 EHVDNIYT 127 (335)
Q Consensus 120 ~Ei~~Av~ 127 (335)
.+|.+|+.
T Consensus 293 ~Dv~kala 300 (356)
T PF01070_consen 293 LDVAKALA 300 (356)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88888764
No 427
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=68.90 E-value=10 Score=36.66 Aligned_cols=60 Identities=13% Similarity=0.109 Sum_probs=43.4
Q ss_pred CcccHHHHHHhhcCCHHHHHHHHHHHHHcCCceEeccCChhhHHHHHhCCCCEEEEcCCC
Q psy17999 33 WANTYGQHKQHLEFSQEEYVMLQQCADQVDIMFTASAMDQVSFDFLLSANVPFIKIGSGD 92 (335)
Q Consensus 33 ~~~~~~~~~~~~el~~e~~~~L~~~~~~~Gi~f~stpfd~~svd~l~~l~v~~~KIaS~d 92 (335)
+..++.+.++.-.|+.+.--++.+.|++.|+..+.=+|+++++..+.+.|+|+|-+.=+-
T Consensus 121 iDG~fR~~LEe~Gmgy~~EVemi~~A~~~gl~T~~yvf~~e~A~~M~~AGaDiiv~H~Gl 180 (268)
T PF09370_consen 121 IDGQFRQNLEETGMGYDREVEMIRKAHEKGLFTTAYVFNEEQARAMAEAGADIIVAHMGL 180 (268)
T ss_dssp --HHHHHHHHHTT--HHHHHHHHHHHHHTT-EE--EE-SHHHHHHHHHHT-SEEEEE-SS
T ss_pred eccHHHHHHHhcCCCHHHHHHHHHHHHHCCCeeeeeecCHHHHHHHHHcCCCEEEecCCc
Confidence 445566666667799999999999999999999999999999999999999999876543
No 428
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=68.89 E-value=1.2e+02 Score=29.83 Aligned_cols=97 Identities=12% Similarity=0.227 Sum_probs=50.9
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHHh-cCCCCceeecccCCCCCCCCcccccCceEEee--e---cCCCC-CCccCCCchH
Q psy17999 107 KPLIISTGMLPSIEHVDNIYTTVKQ-YHSNLSILHCVSAYPTPYPTVKQYHSNLSILH--C---VSAYP-TPYHDINLNV 179 (335)
Q Consensus 107 kPvilStG~~~tl~Ei~~Av~~i~~-g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llH--C---~s~YP-~~~~~~nL~~ 179 (335)
+||+++.+...+.+++...++.+.. |-. -+++..+=+. . .+ +.. + ...|= .+....-|+.
T Consensus 211 ~Pv~vKLsP~~~~~~i~~ia~~~~~~Gad--Gi~l~NT~~~--------~--~~-~~~~~~~~~~GGlSG~~i~p~al~~ 277 (335)
T TIGR01036 211 VPVLVKIAPDLTESDLEDIADSLVELGID--GVIATNTTVS--------R--SL-VQGPKNSDETGGLSGKPLQDKSTEI 277 (335)
T ss_pred CceEEEeCCCCCHHHHHHHHHHHHHhCCc--EEEEECCCCc--------c--cc-ccCccccCCCCcccCHHHHHHHHHH
Confidence 8999999866576778887776666 533 1111111100 0 00 000 0 00010 0112345677
Q ss_pred HHHHHHHCC-CCCeecCCCCCChHHHHHHHHcCCcEEE
Q psy17999 180 IHTLRSRYP-DIPIGYSGHENGVHVCYAAVAMGAQIIE 216 (335)
Q Consensus 180 i~~L~~~fp-~~pVG~SdHt~g~~~~~aAvalGA~vIE 216 (335)
+..+++..+ ++||.=++--....-++..+.+||+.+.
T Consensus 278 v~~~~~~~~~~ipiig~GGI~~~~da~e~l~aGA~~Vq 315 (335)
T TIGR01036 278 IRRLYAELQGRLPIIGVGGISSAQDALEKIRAGASLLQ 315 (335)
T ss_pred HHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCcHHH
Confidence 888877664 4787434433334445556677888665
No 429
>PRK14987 gluconate operon transcriptional regulator; Provisional
Probab=68.87 E-value=66 Score=30.39 Aligned_cols=85 Identities=12% Similarity=0.074 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHcCCceEeccC--Chh----hHHHHHhCCCCEEEEcCCCCCCHHHHHHHHhcCCcEEEe--CCCC----
Q psy17999 49 EEYVMLQQCADQVDIMFTASAM--DQV----SFDFLLSANVPFIKIGSGDSNNIPLIKYAASKQKPLIIS--TGML---- 116 (335)
Q Consensus 49 e~~~~L~~~~~~~Gi~f~stpf--d~~----svd~l~~l~v~~~KIaS~d~~n~~LL~~~a~~gkPvilS--tG~~---- 116 (335)
+-+..+.+.+++.|..++.... +.+ .++.+.+.++|.+-+.+.+ .+.+.++.+.+.+.|+++- ....
T Consensus 80 ~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiI~~~~~-~~~~~~~~l~~~~iPvV~~~~~~~~~~~~ 158 (331)
T PRK14987 80 EVLRGIESVTDAHGYQTMLAHYGYKPEMEQERLESMLSWNIDGLILTERT-HTPRTLKMIEVAGIPVVELMDSQSPCLDI 158 (331)
T ss_pred HHHHHHHHHHHHCCCEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEcCCC-CCHHHHHHHHhCCCCEEEEecCCCCCCCc
Confidence 4466788899999988665443 332 2445556789998887654 3567888888889999852 2111
Q ss_pred -C---CHHHHHHHHHHHHh-cCC
Q psy17999 117 -P---SIEHVDNIYTTVKQ-YHS 134 (335)
Q Consensus 117 -~---tl~Ei~~Av~~i~~-g~~ 134 (335)
. ..+-...|++++.. |+.
T Consensus 159 ~V~~Dn~~~~~~a~~~L~~~Gh~ 181 (331)
T PRK14987 159 AVGFDNFEAARQMTTAIIARGHR 181 (331)
T ss_pred eEEeCcHHHHHHHHHHHHHCCCc
Confidence 0 22334567777766 544
No 430
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=68.86 E-value=32 Score=33.51 Aligned_cols=81 Identities=16% Similarity=0.072 Sum_probs=62.4
Q ss_pred HHHHHHHHcCCceEeccCChhhHHHHHhCCCCEEEEcCC---------C---CCCHHHHHHHHh----cCCcEEEe--CC
Q psy17999 53 MLQQCADQVDIMFTASAMDQVSFDFLLSANVPFIKIGSG---------D---SNNIPLIKYAAS----KQKPLIIS--TG 114 (335)
Q Consensus 53 ~L~~~~~~~Gi~f~stpfd~~svd~l~~l~v~~~KIaS~---------d---~~n~~LL~~~a~----~gkPvilS--tG 114 (335)
.|++.-++-++.+.-.+||.-|+..+++.|.+++.+.|. | ++--.++..+.+ +.+||++. ||
T Consensus 6 ~lr~~l~~~~~~~~pg~~D~lSAri~e~aGf~ai~~ss~~va~slG~pD~g~l~~~e~~~~~~~I~~~~~lPv~aD~d~G 85 (290)
T TIGR02321 6 ALRAALDSGRLFTAMAAHNPLVAKLAEQAGFGGIWGSGFELSASYAVPDANILSMSTHLEMMRAIASTVSIPLIADIDTG 85 (290)
T ss_pred HHHHHHhCCCCEEeccccCHHHHHHHHHcCCCEEEECHHHHHHHCCCCCcccCCHHHHHHHHHHHHhccCCCEEEECCCC
Confidence 577777888999999999999999999999999999885 2 333344544432 58999986 88
Q ss_pred CCCCHHHHHHHHHHHHh-cCC
Q psy17999 115 MLPSIEHVDNIYTTVKQ-YHS 134 (335)
Q Consensus 115 ~~~tl~Ei~~Av~~i~~-g~~ 134 (335)
-+ +..++...|+.+.+ |-.
T Consensus 86 yG-~~~~v~~tV~~~~~aGva 105 (290)
T TIGR02321 86 FG-NAVNVHYVVPQYEAAGAS 105 (290)
T ss_pred CC-CcHHHHHHHHHHHHcCCe
Confidence 77 44478888887776 644
No 431
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=68.79 E-value=47 Score=33.48 Aligned_cols=129 Identities=19% Similarity=0.216 Sum_probs=70.4
Q ss_pred CCCHHHHHHHHh-cCCcEEEeCCCCCCHHHHHHHHHHHHhcCCCCceeecccCCCCCCCCcccccCceEEeeecCCCCCC
Q psy17999 93 SNNIPLIKYAAS-KQKPLIISTGMLPSIEHVDNIYTTVKQYHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYPTP 171 (335)
Q Consensus 93 ~~n~~LL~~~a~-~gkPvilStG~~~tl~Ei~~Av~~i~~g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~s~YP~~ 171 (335)
..+|..|+.+.+ +++|||++ |.. +.++...+++. |-. -|.++-.|=+ +.|..|
T Consensus 214 ~~~w~~i~~l~~~~~~PvivK-Gv~-~~eda~~a~~~---Gvd--~I~VS~HGGr-------------------q~~~~~ 267 (367)
T TIGR02708 214 KLSPRDIEEIAGYSGLPVYVK-GPQ-CPEDADRALKA---GAS--GIWVTNHGGR-------------------QLDGGP 267 (367)
T ss_pred CCCHHHHHHHHHhcCCCEEEe-CCC-CHHHHHHHHHc---CcC--EEEECCcCcc-------------------CCCCCC
Confidence 346677888776 48999999 777 77777766552 432 1222222211 112222
Q ss_pred ccCCCchHHHHHHHHC-CCCCeecC-CCCCChHHHHHHHHcCCc--EEEeccCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q psy17999 172 YHDINLNVIHTLRSRY-PDIPIGYS-GHENGVHVCYAAVAMGAQ--IIEKHFTLDKSWKGSDHASSLTPPELKALVTGIR 247 (335)
Q Consensus 172 ~~~~nL~~i~~L~~~f-p~~pVG~S-dHt~g~~~~~aAvalGA~--vIEkH~tld~~~~G~Dh~~Sl~p~el~~lv~~ir 247 (335)
..+..++.+++.. +++||..+ |=..|..+. -|.++||+ .|=+.|---=...|.+. --.-++.|.++++
T Consensus 268 ---a~~~~L~ei~~av~~~i~vi~dGGIr~g~Dv~-KaLalGAd~V~igR~~l~~la~~G~~g----v~~~l~~l~~El~ 339 (367)
T TIGR02708 268 ---AAFDSLQEVAEAVDKRVPIVFDSGVRRGQHVF-KALASGADLVALGRPVIYGLALGGSQG----ARQVFEYLNKELK 339 (367)
T ss_pred ---cHHHHHHHHHHHhCCCCcEEeeCCcCCHHHHH-HHHHcCCCEEEEcHHHHHHHHhcCHHH----HHHHHHHHHHHHH
Confidence 2466788888766 34888544 444455555 47779998 55554332111223220 0123444445666
Q ss_pred HHHHHhCC
Q psy17999 248 DIEQSLGS 255 (335)
Q Consensus 248 ~~~~alG~ 255 (335)
.+-..+|.
T Consensus 340 ~~M~l~G~ 347 (367)
T TIGR02708 340 RVMQLTGT 347 (367)
T ss_pred HHHHHhCC
Confidence 66666674
No 432
>cd06324 PBP1_ABC_sugar_binding_like_13 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=68.71 E-value=19 Score=33.86 Aligned_cols=62 Identities=16% Similarity=0.155 Sum_probs=44.1
Q ss_pred HHHHHHHHHHcCCceEecc--CChh----hHHHHHhC--CCCEEEEcCCCCCCHHHHHHHHhcCCcEEEe
Q psy17999 51 YVMLQQCADQVDIMFTASA--MDQV----SFDFLLSA--NVPFIKIGSGDSNNIPLIKYAASKQKPLIIS 112 (335)
Q Consensus 51 ~~~L~~~~~~~Gi~f~stp--fd~~----svd~l~~l--~v~~~KIaS~d~~n~~LL~~~a~~gkPvilS 112 (335)
...+.+.+++.|..++... .+.+ .++.+... ++|.+-|.+.+..+.+.++.+.+.|.||++-
T Consensus 19 ~~gi~~~~~~~g~~v~~~~~~~~~~~~~~~i~~~~~~~~~vdgiIi~~~~~~~~~~~~~~~~~giPvV~~ 88 (305)
T cd06324 19 ARFMQAAADDLGIELEVLYAERDRFLMLQQARTILQRPDKPDALIFTNEKSVAPELLRLAEGAGVKLFLV 88 (305)
T ss_pred HHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHHHhccCCCEEEEcCCccchHHHHHHHHhCCCeEEEE
Confidence 5567788889998765543 3332 23445556 8999999776555678889988899998865
No 433
>cd00502 DHQase_I Type I 3-dehydroquinase, (3-dehydroquinate dehydratase or DHQase.) Catalyzes the cis-dehydration of 3-dehydroquinate via a covalent imine intermediate to produce dehydroshikimate. Dehydroquinase is the third enzyme in the shikimate pathway, which is involved in the biosynthesis of aromatic amino acids. Type I DHQase exists as a homodimer. Type II 3-dehydroquinase also catalyzes the same overall reaction, but is unrelated in terms of sequence and structure, and utilizes a completely different reaction mechanism.
Probab=68.66 E-value=15 Score=33.73 Aligned_cols=67 Identities=18% Similarity=0.215 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHcCCceEeccCChhh----------HHHHHhCCCCEEEEcCCCC---CCHHHHHHHHhc----CCcEEE
Q psy17999 49 EEYVMLQQCADQVDIMFTASAMDQVS----------FDFLLSANVPFIKIGSGDS---NNIPLIKYAASK----QKPLII 111 (335)
Q Consensus 49 e~~~~L~~~~~~~Gi~f~stpfd~~s----------vd~l~~l~v~~~KIaS~d~---~n~~LL~~~a~~----gkPvil 111 (335)
+...++.+..++.|..++.|-++.+. ++.+..+|+|++||+..-- .|..|++...+. ++|+|
T Consensus 100 ~~~~~~~~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKla~~~~~~~D~~~ll~~~~~~~~~~~~p~i- 178 (225)
T cd00502 100 ALLEELINSRKKGNTKIIGSYHDFSGTPSDEELVSRLEKMAALGADIVKIAVMANSIEDNLRLLKFTRQVKNLYDIPLI- 178 (225)
T ss_pred hHHHHHHHHHHhCCCEEEEEeccCCCCcCHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHHHHHHHHHhcCCCCEE-
Confidence 45778888888899999999876542 3445567899999987643 455666555443 35765
Q ss_pred eCCCC
Q psy17999 112 STGML 116 (335)
Q Consensus 112 StG~~ 116 (335)
.-+|+
T Consensus 179 ~~~MG 183 (225)
T cd00502 179 AINMG 183 (225)
T ss_pred EEEcC
Confidence 33444
No 434
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=68.62 E-value=24 Score=35.31 Aligned_cols=78 Identities=12% Similarity=0.187 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHc-CCceEec-cCChhhHHHHHhCCCCEEEEc--CC---CC--------CCHHHHHHHHh----cCCcEE
Q psy17999 50 EYVMLQQCADQV-DIMFTAS-AMDQVSFDFLLSANVPFIKIG--SG---DS--------NNIPLIKYAAS----KQKPLI 110 (335)
Q Consensus 50 ~~~~L~~~~~~~-Gi~f~st-pfd~~svd~l~~l~v~~~KIa--S~---d~--------~n~~LL~~~a~----~gkPvi 110 (335)
....++...+.. ++.++.- +-+.+.+..|.+.|+|.+||+ ++ .. -.+..|..+++ .+.|||
T Consensus 137 ~i~~ik~ir~~~p~~~viaGNV~T~e~a~~Li~aGAD~ikVgiGpGSicttR~~~Gvg~pqltAv~~~a~aa~~~~v~VI 216 (343)
T TIGR01305 137 FVEFVKLVREAFPEHTIMAGNVVTGEMVEELILSGADIVKVGIGPGSVCTTRTKTGVGYPQLSAVIECADAAHGLKGHII 216 (343)
T ss_pred HHHHHHHHHhhCCCCeEEEecccCHHHHHHHHHcCCCEEEEcccCCCcccCceeCCCCcCHHHHHHHHHHHhccCCCeEE
Confidence 344444444444 6888888 999999999999999999988 11 11 12333333333 378999
Q ss_pred EeCCCCCCHHHHHHHHHH
Q psy17999 111 ISTGMLPSIEHVDNIYTT 128 (335)
Q Consensus 111 lStG~~~tl~Ei~~Av~~ 128 (335)
..-|.. +-.+|-+|+..
T Consensus 217 aDGGIr-~~gDI~KALA~ 233 (343)
T TIGR01305 217 SDGGCT-CPGDVAKAFGA 233 (343)
T ss_pred EcCCcC-chhHHHHHHHc
Confidence 999999 99999998763
No 435
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=68.60 E-value=48 Score=32.63 Aligned_cols=78 Identities=21% Similarity=0.366 Sum_probs=54.8
Q ss_pred EEEcCCCCCCHHHHHHHHh----cCCcEEEeCCCCCCHHHHHHHHHHHHhcCCCCceeecccCCCCCCCCcccccCceEE
Q psy17999 86 IKIGSGDSNNIPLIKYAAS----KQKPLIISTGMLPSIEHVDNIYTTVKQYHSNLSILHCVSAYPTPYPTVKQYHSNLSI 161 (335)
Q Consensus 86 ~KIaS~d~~n~~LL~~~a~----~gkPvilStG~~~tl~Ei~~Av~~i~~g~~~~~~~~c~~g~~~~~~~~~~~~~~l~l 161 (335)
|=|++.++.|+..++.+-+ .+.||||.+..+ .+. +. +..
T Consensus 17 yaV~AfN~~n~e~~~avi~AAe~~~sPvIlq~s~~-~~~-------~~--g~~--------------------------- 59 (307)
T PRK05835 17 YGVGAFNFVNFEMLNAIFEAGNEENSPLFIQASEG-AIK-------YM--GID--------------------------- 59 (307)
T ss_pred ceEEEEEECCHHHHHHHHHHHHHHCCCEEEEcCcc-HHh-------hC--ChH---------------------------
Confidence 5688888899988877543 589999998766 211 10 100
Q ss_pred eeecCCCCCCccCCCchHHHHHHHHCCCCCeec-CCCCCChHHHHHHHHcCCc
Q psy17999 162 LHCVSAYPTPYHDINLNVIHTLRSRYPDIPIGY-SGHENGVHVCYAAVAMGAQ 213 (335)
Q Consensus 162 lHC~s~YP~~~~~~nL~~i~~L~~~fp~~pVG~-SdHt~g~~~~~aAvalGA~ 213 (335)
.=...+..+.++++.+||.. =||......+..|+.+|.+
T Consensus 60 -------------~~~~~~~~~a~~~~~VPValHLDHg~~~e~i~~ai~~Gft 99 (307)
T PRK05835 60 -------------MAVGMVKIMCERYPHIPVALHLDHGTTFESCEKAVKAGFT 99 (307)
T ss_pred -------------HHHHHHHHHHHhcCCCeEEEECCCCCCHHHHHHHHHcCCC
Confidence 01124556667773499976 5999999999999999987
No 436
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=68.60 E-value=31 Score=33.48 Aligned_cols=74 Identities=12% Similarity=0.115 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCce----------------------EeccCChhhHHHHHhCCCCEEEEcCCC---------CCCHHHHH
Q psy17999 52 VMLQQCADQVDIMF----------------------TASAMDQVSFDFLLSANVPFIKIGSGD---------SNNIPLIK 100 (335)
Q Consensus 52 ~~L~~~~~~~Gi~f----------------------~stpfd~~svd~l~~l~v~~~KIaS~d---------~~n~~LL~ 100 (335)
+++.++|+..|+.+ .++| ++..+|+++-|||++=|+=+. --|+++|+
T Consensus 116 ~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~~~T~p--eea~~Fv~~TgvD~LAvaiGt~HG~yk~~p~Ldf~~L~ 193 (282)
T TIGR01858 116 KEVVDFCHRQDCSVEAELGRLGGVEDDLSVDEEDALYTDP--QEAKEFVEATGVDSLAVAIGTAHGLYKKTPKLDFDRLA 193 (282)
T ss_pred HHHHHHHHHcCCeEEEEEEecCCccCCCccccchhccCCH--HHHHHHHHHHCcCEEecccCccccCcCCCCccCHHHHH
Q ss_pred HHHhc-CCcEEEeCCCCCCHHHHHHHHH
Q psy17999 101 YAASK-QKPLIISTGMLPSIEHVDNIYT 127 (335)
Q Consensus 101 ~~a~~-gkPvilStG~~~tl~Ei~~Av~ 127 (335)
++.+. +.|++|==|.+.+.+++.+|++
T Consensus 194 ~I~~~~~iPLVlHGgSG~~~e~~~~ai~ 221 (282)
T TIGR01858 194 EIREVVDVPLVLHGASDVPDEDVRRTIE 221 (282)
T ss_pred HHHHHhCCCeEEecCCCCCHHHHHHHHH
No 437
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=68.38 E-value=36 Score=33.47 Aligned_cols=88 Identities=14% Similarity=0.120 Sum_probs=60.4
Q ss_pred EcCCCCCCHHHHHHHHh-----cC-CcEEEeCCCCCCHHH--HHHHHHHHHhcCCCCceeecccCCCCCCCCcccccCce
Q psy17999 88 IGSGDSNNIPLIKYAAS-----KQ-KPLIISTGMLPSIEH--VDNIYTTVKQYHSNLSILHCVSAYPTPYPTVKQYHSNL 159 (335)
Q Consensus 88 IaS~d~~n~~LL~~~a~-----~g-kPvilStG~~~tl~E--i~~Av~~i~~g~~~~~~~~c~~g~~~~~~~~~~~~~~l 159 (335)
.||+-|.|.+|+.++-+ .+ +||-+++=.+-+..+ ....+..+...+. +.
T Consensus 112 ~Ga~Ll~~p~lv~~iv~a~~~av~~iPVTVKiRlG~d~~~~~~~~ia~~~~~~g~-----------------------~~ 168 (323)
T COG0042 112 AGAALLKNPELLAEIVKAMVEAVGDIPVTVKIRLGWDDDDILALEIARILEDAGA-----------------------DA 168 (323)
T ss_pred cchhhcCCHHHHHHHHHHHHHhhCCCCeEEEEecccCcccccHHHHHHHHHhcCC-----------------------CE
Confidence 47889999999987654 34 899999543324554 4445555555333 67
Q ss_pred EEeeecCCCCCCccCCCchHHHHHHHHCCCCCeecCCCC
Q psy17999 160 SILHCVSAYPTPYHDINLNVIHTLRSRYPDIPIGYSGHE 198 (335)
Q Consensus 160 ~llHC~s~YP~~~~~~nL~~i~~L~~~fp~~pVG~SdHt 198 (335)
..+|+=+..-.-...+|+..|..+|+.++++||.-.+--
T Consensus 169 ltVHgRtr~~~y~~~ad~~~I~~vk~~~~~ipvi~NGdI 207 (323)
T COG0042 169 LTVHGRTRAQGYLGPADWDYIKELKEAVPSIPVIANGDI 207 (323)
T ss_pred EEEecccHHhcCCCccCHHHHHHHHHhCCCCeEEeCCCc
Confidence 888966644333333999999999999966999655543
No 438
>cd08210 RLP_RrRLP Ribulose bisphosphate carboxylase like proteins (RLPs) similar to R.rubrum RLP. RLP from Rhodospirillum rubrum plays a role in an uncharacterized sulfur salvage pathway and has been shown to catalyze a novel isomerization reaction that converts 5-methylthio-d-ribulose 1-phosphate to a 3:1 mixture of 1-methylthioxylulose 5-phosphate and 1-methylthioribulose 5-phosphate.
Probab=68.37 E-value=1.1e+02 Score=30.71 Aligned_cols=103 Identities=16% Similarity=0.180 Sum_probs=61.9
Q ss_pred hcCCcEEEeCCCCCCHHHHHHHHHHHHh-cCCCCceeecccCCCCCCCCcccccCceEEeeecCCCCCCccCCCchHHHH
Q psy17999 104 SKQKPLIISTGMLPSIEHVDNIYTTVKQ-YHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYPTPYHDINLNVIHT 182 (335)
Q Consensus 104 ~~gkPvilStG~~~tl~Ei~~Av~~i~~-g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~s~YP~~~~~~nL~~i~~ 182 (335)
+||..++...+.+.+.+|+.+=++..++ |.. ++|++.- ..-+.++..
T Consensus 189 eTG~~~~y~~Nita~~~em~~ra~~a~~~Ga~-------------------------~vMv~~~-------~~G~~~~~~ 236 (364)
T cd08210 189 ETGGRTLYAPNVTGPPTQLLERARFAKEAGAG-------------------------GVLIAPG-------LTGLDTFRE 236 (364)
T ss_pred hcCCcceEEEecCCCHHHHHHHHHHHHHcCCC-------------------------EEEeecc-------cchHHHHHH
Confidence 4666666665554367788887777776 543 4555443 234557788
Q ss_pred HHHHCCC-CCe-ec---------CCCCCChH--HHHHHHHcCCcEEEeccCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q psy17999 183 LRSRYPD-IPI-GY---------SGHENGVH--VCYAAVAMGAQIIEKHFTLDKSWKGSDHASSLTPPELKALVTGIR 247 (335)
Q Consensus 183 L~~~fp~-~pV-G~---------SdHt~g~~--~~~aAvalGA~vIEkH~tld~~~~G~Dh~~Sl~p~el~~lv~~ir 247 (335)
|++.. + +|| +. |-|..... ....+-..||+++ |+. +..| .+.++++++.++.+.++
T Consensus 237 l~~~~-~~l~i~aHra~~ga~~~~~~~is~~~~~~kl~RlaGad~~--~~~---~~~g---~~~~~~e~~~~ia~~~~ 305 (364)
T cd08210 237 LAEDF-DFLPILAHPAFAGAFVSSGDGISHALLFGTLFRLAGADAV--IFP---NYGG---RFGFSREECQAIADACR 305 (364)
T ss_pred HHhcC-CCcEEEEccccccccccCCCcccHHHHHHHHHHHhCCCEE--EeC---CCcC---CccCCHHHHHHHHHHhc
Confidence 88876 6 776 43 11212221 2334557899976 542 2222 67899999988877543
No 439
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=68.29 E-value=35 Score=33.17 Aligned_cols=74 Identities=8% Similarity=0.103 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCce--------------------EeccCChhhHHHHHhCCCCEEEEcCCCC---------CCHHHHHHH
Q psy17999 52 VMLQQCADQVDIMF--------------------TASAMDQVSFDFLLSANVPFIKIGSGDS---------NNIPLIKYA 102 (335)
Q Consensus 52 ~~L~~~~~~~Gi~f--------------------~stpfd~~svd~l~~l~v~~~KIaS~d~---------~n~~LL~~~ 102 (335)
+++.++|+..|+.+ .++| ++..+|+++.|||++=|+=++. -|+++|+++
T Consensus 121 revv~~Ah~~gv~VEaElG~igg~ed~~~~~~~~yT~p--eeA~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~L~~~~L~~I 198 (285)
T PRK07709 121 KKVVEYAHARNVSVEAELGTVGGQEDDVIAEGVIYADP--AECKHLVEATGIDCLAPALGSVHGPYKGEPNLGFAEMEQV 198 (285)
T ss_pred HHHHHHHHHcCCEEEEEEeccCCccCCcccccccCCCH--HHHHHHHHHhCCCEEEEeecccccCcCCCCccCHHHHHHH
Q ss_pred Hhc-CCcEEEeCCCCCCHHHHHHHHH
Q psy17999 103 ASK-QKPLIISTGMLPSIEHVDNIYT 127 (335)
Q Consensus 103 a~~-gkPvilStG~~~tl~Ei~~Av~ 127 (335)
.+. +.|++|==|.+.+.+++.+|++
T Consensus 199 ~~~~~iPLVLHGgSG~~~e~~~~ai~ 224 (285)
T PRK07709 199 RDFTGVPLVLHGGTGIPTADIEKAIS 224 (285)
T ss_pred HHHHCCCEEEeCCCCCCHHHHHHHHH
No 440
>TIGR01060 eno phosphopyruvate hydratase. Alternate name: enolase
Probab=68.19 E-value=39 Score=34.48 Aligned_cols=87 Identities=9% Similarity=0.172 Sum_probs=63.0
Q ss_pred CCHHHHHHHHH-HHHHcCCceEeccCChhhHHHHHhCC--C-CEEEEcCCCC--CCHHHHHHHHhcC--CcEEEeCCCCC
Q psy17999 46 FSQEEYVMLQQ-CADQVDIMFTASAMDQVSFDFLLSAN--V-PFIKIGSGDS--NNIPLIKYAASKQ--KPLIISTGMLP 117 (335)
Q Consensus 46 l~~e~~~~L~~-~~~~~Gi~f~stpfd~~svd~l~~l~--v-~~~KIaS~d~--~n~~LL~~~a~~g--kPvilStG~~~ 117 (335)
++.++..++.+ .+++++|.|+=.||.+++.+-+.++. + +-+.|...++ +|..-++.+...+ -=|.++.....
T Consensus 262 ~s~~eai~~~~~lle~~~i~~iEdPl~~~D~~~~~~L~~~~~~~ipI~gDE~~~t~~~~~~~~i~~~a~d~v~ik~~~iG 341 (425)
T TIGR01060 262 LTSEEMIEYYKELVEKYPIVSIEDGLSEEDWEGWAELTKELGDKVQIVGDDLFVTNTEILREGIEMGVANSILIKPNQIG 341 (425)
T ss_pred cCHHHHHHHHHHHHhcCCcEEEEcCCCcccHHHHHHHHHhcCCCCeEEeCCCcccCHHHHHHHHHhCCCCEEEecccccC
Confidence 66777777766 67889999999999888776665542 2 1356666774 5788888776654 34667766555
Q ss_pred CHHHHHHHHHHHHhc
Q psy17999 118 SIEHVDNIYTTVKQY 132 (335)
Q Consensus 118 tl~Ei~~Av~~i~~g 132 (335)
++-|..++++..+..
T Consensus 342 GItea~~ia~lA~~~ 356 (425)
T TIGR01060 342 TLTETLDAVELAKKA 356 (425)
T ss_pred CHHHHHHHHHHHHHc
Confidence 999999999987764
No 441
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=68.17 E-value=1.2e+02 Score=29.24 Aligned_cols=151 Identities=17% Similarity=0.160 Sum_probs=89.3
Q ss_pred hcCCHHHHHHHHHHHHH--c-CCceEeccC--Ch-hh---HHHHHhCCCCEEEEcCCCCCC---HHHHHH---HH-hc-C
Q psy17999 44 LEFSQEEYVMLQQCADQ--V-DIMFTASAM--DQ-VS---FDFLLSANVPFIKIGSGDSNN---IPLIKY---AA-SK-Q 106 (335)
Q Consensus 44 ~el~~e~~~~L~~~~~~--~-Gi~f~stpf--d~-~s---vd~l~~l~v~~~KIaS~d~~n---~~LL~~---~a-~~-g 106 (335)
..||.++..++.+.+.+ . .+++++-+- +. ++ +...+++|+|.+-+...-... -.++++ ++ .+ +
T Consensus 48 ~~Ls~~Er~~l~~~~~~~~~g~~pvi~gv~~~~t~~ai~~a~~A~~~Gad~v~v~pP~y~~~~~~~l~~~f~~ia~a~~~ 127 (294)
T TIGR02313 48 GSLTLEERKQAIENAIDQIAGRIPFAPGTGALNHDETLELTKFAEEAGADAAMVIVPYYNKPNQEALYDHFAEVADAVPD 127 (294)
T ss_pred ccCCHHHHHHHHHHHHHHhCCCCcEEEECCcchHHHHHHHHHHHHHcCCCEEEEcCccCCCCCHHHHHHHHHHHHHhccC
Confidence 45899999999886543 2 366665443 32 22 355667899988777654333 345544 44 35 7
Q ss_pred CcEEEe-----CCCCCCHHHHHHHHHHHHhcCCCCceeecccCCCCCCCCcccccCceEEeeecCCCCCCccCCCchHHH
Q psy17999 107 KPLIIS-----TGMLPSIEHVDNIYTTVKQYHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYPTPYHDINLNVIH 181 (335)
Q Consensus 107 kPvilS-----tG~~~tl~Ei~~Av~~i~~g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~s~YP~~~~~~nL~~i~ 181 (335)
.||++= ||..++.+.+.+.++. ++ +++-+.-+ .-|+..+.
T Consensus 128 lpv~iYn~P~~tg~~l~~~~l~~L~~~----~p-----------------------nv~giK~s--------s~d~~~~~ 172 (294)
T TIGR02313 128 FPIIIYNIPGRAAQEIAPKTMARLRKD----CP-----------------------NIVGAKES--------NKDFEHLN 172 (294)
T ss_pred CCEEEEeCchhcCcCCCHHHHHHHHhh----CC-----------------------CEEEEEeC--------CCCHHHHH
Confidence 999986 7877777777765532 22 33333322 24666677
Q ss_pred HHHHHCC-CCCeecCCCCCChHHHHHHHHcCCc-EEEeccCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q psy17999 182 TLRSRYP-DIPIGYSGHENGVHVCYAAVAMGAQ-IIEKHFTLDKSWKGSDHASSLTPPELKALVTGI 246 (335)
Q Consensus 182 ~L~~~fp-~~pVG~SdHt~g~~~~~aAvalGA~-vIEkH~tld~~~~G~Dh~~Sl~p~el~~lv~~i 246 (335)
.+....+ ++. .|+++. .....++++||+ +|= ....+-|+.+.+|.+..
T Consensus 173 ~~~~~~~~~~~-v~~G~d---~~~~~~l~~Ga~G~is-------------~~~n~~P~~~~~l~~~~ 222 (294)
T TIGR02313 173 HLFLEAGRDFL-LFCGIE---LLCLPMLAIGAAGSIA-------------ATANVEPKEVAELCEAA 222 (294)
T ss_pred HHHHhcCCCeE-EEEcch---HHHHHHHHCCCCEEEe-------------cHHhhCHHHHHHHHHHH
Confidence 7766553 222 355543 444567789997 431 22345677777776544
No 442
>PRK09284 thiamine biosynthesis protein ThiC; Provisional
Probab=67.89 E-value=40 Score=35.88 Aligned_cols=139 Identities=17% Similarity=0.146 Sum_probs=91.5
Q ss_pred CCHHHHHHHHHHHHHcCCceE----------eccCChhhHHHHHhCCCCEEEEcCCCCCCHHHHHHHHhcCCcEEEeCCC
Q psy17999 46 FSQEEYVMLQQCADQVDIMFT----------ASAMDQVSFDFLLSANVPFIKIGSGDSNNIPLIKYAASKQKPLIISTGM 115 (335)
Q Consensus 46 l~~e~~~~L~~~~~~~Gi~f~----------stpfd~~svd~l~~l~v~~~KIaS~d~~n~~LL~~~a~~gkPvilStG~ 115 (335)
+-.+.|.+|.+.|+++++.+. ....|..++..|.-+ -.|.+.+=+.|.-|+|.-.+
T Consensus 353 plYe~FD~ileI~k~YDVtlSLGDGLRPG~iaDA~D~AQ~~EL~tL--------------GELt~rA~e~gVQVMIEGPG 418 (607)
T PRK09284 353 FLYTHFEEICEIMAAYDVSFSLGDGLRPGSIADANDEAQFAELETL--------------GELTKIAWEHDVQVMIEGPG 418 (607)
T ss_pred cHHHHHHHHHHHHHHhCeeeeccCCcCCCccccCCcHHHHHHHHHH--------------HHHHHHHHHcCCeEEEECCC
Confidence 556889999999999999875 455666666665544 47777788889999999877
Q ss_pred CCCHHHHHHHHHHHHhcCCCCceeecccCCCCCCCCcccccCceEEeeecCCCCCCccCCCchHHHHHHHHCCCCCeecC
Q psy17999 116 LPSIEHVDNIYTTVKQYHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYPTPYHDINLNVIHTLRSRYPDIPIGYS 195 (335)
Q Consensus 116 ~~tl~Ei~~Av~~i~~g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~s~YP~~~~~~nL~~i~~L~~~fp~~pVG~S 195 (335)
...+.+|+.-++.-++-+. -+|+-- |.=+. + ++--||
T Consensus 419 HVPl~~I~~N~~lqk~lc~----------------------------------~APfYv--LGPLv-----T-DIApGY- 455 (607)
T PRK09284 419 HVPMHLIKENMDKQLEHCH----------------------------------EAPFYT--LGPLT-----T-DIAPGY- 455 (607)
T ss_pred CCcHHHHHHHHHHHHHhhC----------------------------------CCCeee--cCCcc-----c-ccCCCc-
Confidence 7899999998887665222 011111 11111 2 566677
Q ss_pred CCCCChHHHHHHHHcCCcEEEeccCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q psy17999 196 GHENGVHVCYAAVAMGAQIIEKHFTLDKSWKGSDHASSLTPPELKALVTGIRD 248 (335)
Q Consensus 196 dHt~g~~~~~aAvalGA~vIEkH~tld~~~~G~Dh~~Sl~p~el~~lv~~ir~ 248 (335)
||..+.--+..|...||++|= -+|+--.+.-|| +++.++=|-.-|.
T Consensus 456 DHItsAIGaA~aa~~Gad~LC-YVTPaEHLgLP~------~eDVreGVIA~KI 501 (607)
T PRK09284 456 DHITSAIGAAMIGWFGTAMLC-YVTPKEHLGLPN------KDDVKEGVITYKI 501 (607)
T ss_pred hHHHHHHHHHHHHHcCCCeEE-ecChHHHcCCCC------HHHHHHHHHHHHH
Confidence 887764444456678999863 466654433343 6677665555444
No 443
>COG1456 CdhE CO dehydrogenase/acetyl-CoA synthase gamma subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=67.85 E-value=48 Score=33.63 Aligned_cols=85 Identities=14% Similarity=0.177 Sum_probs=68.3
Q ss_pred CHHHHHHHHHHHHHcCCceEeccCChhhHHHHHhC-C-CCEEEEcCCCCCCHHHHHHHHhcCCcEEEeC-CCCCCHHHHH
Q psy17999 47 SQEEYVMLQQCADQVDIMFTASAMDQVSFDFLLSA-N-VPFIKIGSGDSNNIPLIKYAASKQKPLIIST-GMLPSIEHVD 123 (335)
Q Consensus 47 ~~e~~~~L~~~~~~~Gi~f~stpfd~~svd~l~~l-~-v~~~KIaS~d~~n~~LL~~~a~~gkPvilSt-G~~~tl~Ei~ 123 (335)
+.+.+++-.+...+.|++++..-||++.+....+. + -.-+--++.+=|.-++++-+.+.+.|+.||. + +++++.
T Consensus 144 dpekfa~ave~v~~~~~pv~l~s~dpevmkaaLev~~dqkPllYaAte~n~~e~~klav~y~vplvl~a~~---dl~~lk 220 (467)
T COG1456 144 DPEKFAEAVEKVAEAGLPVILCSFDPEVMKAALEVVKDQKPLLYAATEDNWKEFAKLAVEYKVPLVLSAFN---DLDDLK 220 (467)
T ss_pred CHHHHHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhhccCceeeecccccHHHHHHHHhhcCCcEEEeccC---CHHHHH
Confidence 56789999999999999999999999988765542 1 1335567777788889998999999999998 5 899999
Q ss_pred HHHHHHHh-cCC
Q psy17999 124 NIYTTVKQ-YHS 134 (335)
Q Consensus 124 ~Av~~i~~-g~~ 134 (335)
.-+..+++ |-.
T Consensus 221 ~la~~~~~~Gi~ 232 (467)
T COG1456 221 NLAVTYAQAGIK 232 (467)
T ss_pred HHHHHHHHcCCc
Confidence 97777776 543
No 444
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=67.80 E-value=27 Score=35.20 Aligned_cols=78 Identities=15% Similarity=0.136 Sum_probs=56.5
Q ss_pred CCHHHHHHHHHHHHHcCCceEe-ccCChhhHHHHHhCCCCEEEEcCC-------CCCCHHHHHHHHh---cCCcEEEeCC
Q psy17999 46 FSQEEYVMLQQCADQVDIMFTA-SAMDQVSFDFLLSANVPFIKIGSG-------DSNNIPLIKYAAS---KQKPLIISTG 114 (335)
Q Consensus 46 l~~e~~~~L~~~~~~~Gi~f~s-tpfd~~svd~l~~l~v~~~KIaS~-------d~~n~~LL~~~a~---~gkPvilStG 114 (335)
++++++++| .+..+++++. .+.+.+.+..+.+.|++.|.|+-. ....+..|.++.+ ...|||++-|
T Consensus 215 ~~w~~i~~l---~~~~~~PvivKGv~~~eda~~a~~~Gvd~I~VS~HGGrq~~~~~a~~~~L~ei~~av~~~i~vi~dGG 291 (367)
T TIGR02708 215 LSPRDIEEI---AGYSGLPVYVKGPQCPEDADRALKAGASGIWVTNHGGRQLDGGPAAFDSLQEVAEAVDKRVPIVFDSG 291 (367)
T ss_pred CCHHHHHHH---HHhcCCCEEEeCCCCHHHHHHHHHcCcCEEEECCcCccCCCCCCcHHHHHHHHHHHhCCCCcEEeeCC
Confidence 555555555 5556666554 456788899999999999977652 1234566766654 2489999999
Q ss_pred CCCCHHHHHHHHH
Q psy17999 115 MLPSIEHVDNIYT 127 (335)
Q Consensus 115 ~~~tl~Ei~~Av~ 127 (335)
.. +-.++.+|+.
T Consensus 292 Ir-~g~Dv~KaLa 303 (367)
T TIGR02708 292 VR-RGQHVFKALA 303 (367)
T ss_pred cC-CHHHHHHHHH
Confidence 99 9999999877
No 445
>PLN02765 pyruvate kinase
Probab=67.67 E-value=47 Score=35.14 Aligned_cols=87 Identities=10% Similarity=0.091 Sum_probs=60.7
Q ss_pred CHHHHHHHHHHHHHcC---CceEeccCChhhHHHHHhC--CCCEEEEcCCCCCC------HH-----HHHHHHhcCCcEE
Q psy17999 47 SQEEYVMLQQCADQVD---IMFTASAMDQVSFDFLLSA--NVPFIKIGSGDSNN------IP-----LIKYAASKQKPLI 110 (335)
Q Consensus 47 ~~e~~~~L~~~~~~~G---i~f~stpfd~~svd~l~~l--~v~~~KIaS~d~~n------~~-----LL~~~a~~gkPvi 110 (335)
+.++..+++++.++.| +.+++=.-..++++-+.+. -.|.+-||=+||.- .| +++.+-+.|||||
T Consensus 231 ~a~DI~~~r~~l~~~g~~~~~IiaKIE~~~av~nl~eIi~~sDgIMVARGDLGvEip~e~vp~~QK~iI~~c~~~gKPVI 310 (526)
T PLN02765 231 HAEDVREAREFLSSLGLSQTQIFAKIENVEGLTHFDEILQEADGIILSRGNLGIDLPPEKVFLFQKAALYKCNMAGKPAV 310 (526)
T ss_pred CHHHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHHHHHhcCEEEEecCccccccCHHHhHHHHHHHHHHHHHhCCCeE
Confidence 4567777777776654 4667766666666555442 27888888888753 23 3445566799999
Q ss_pred EeCCC--------CCCHHHHHHHHHHHHhcCC
Q psy17999 111 ISTGM--------LPSIEHVDNIYTTVKQYHS 134 (335)
Q Consensus 111 lStG~--------~~tl~Ei~~Av~~i~~g~~ 134 (335)
. |=| .||-+|+-.+++.+..|..
T Consensus 311 ~-TQmLeSMi~np~PTRAEvsDVaNAV~DGaD 341 (526)
T PLN02765 311 V-TRVVDSMTDNLRPTRAEATDVANAVLDGAD 341 (526)
T ss_pred E-ehhhhHHhhCCCCChhhHHHHHHHHHhCCC
Confidence 6 864 3788999999999887654
No 446
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=67.65 E-value=56 Score=29.42 Aligned_cols=76 Identities=18% Similarity=0.195 Sum_probs=55.8
Q ss_pred HHHHHHHHHcCCceEeccCChhhHHHHHhCCCCEEEEcCCCC-CCHHHHHHHHhc--CCcEEEeCCCCCCHHHHHHHHHH
Q psy17999 52 VMLQQCADQVDIMFTASAMDQVSFDFLLSANVPFIKIGSGDS-NNIPLIKYAASK--QKPLIISTGMLPSIEHVDNIYTT 128 (335)
Q Consensus 52 ~~L~~~~~~~Gi~f~stpfd~~svd~l~~l~v~~~KIaS~d~-~n~~LL~~~a~~--gkPvilStG~~~tl~Ei~~Av~~ 128 (335)
..+.++|+..|+.++--+++...+....+.|+|++|+=.+.. .-...|+++.+. ..| ++-+|+= |.+.+. ++
T Consensus 95 ~~~~~~~~~~~~~~i~G~~t~~e~~~A~~~Gadyv~~Fpt~~~~G~~~l~~~~~~~~~ip-vvaiGGI-~~~n~~---~~ 169 (187)
T PRK07455 95 PELIEAAVAQDIPIIPGALTPTEIVTAWQAGASCVKVFPVQAVGGADYIKSLQGPLGHIP-LIPTGGV-TLENAQ---AF 169 (187)
T ss_pred HHHHHHHHHcCCCEEcCcCCHHHHHHHHHCCCCEEEECcCCcccCHHHHHHHHhhCCCCc-EEEeCCC-CHHHHH---HH
Confidence 567789999999988889999999999999999999955432 246778887764 478 5566655 565555 44
Q ss_pred HHhc
Q psy17999 129 VKQY 132 (335)
Q Consensus 129 i~~g 132 (335)
+..|
T Consensus 170 l~aG 173 (187)
T PRK07455 170 IQAG 173 (187)
T ss_pred HHCC
Confidence 4444
No 447
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=67.52 E-value=74 Score=31.79 Aligned_cols=136 Identities=18% Similarity=0.204 Sum_probs=84.9
Q ss_pred ceEeccCChhhHHHHHhCCCCEEEEcCC---------CCCCHHHH---HHHHhcCCcEEEeCCCCCCHHHHHHHHHHHHh
Q psy17999 64 MFTASAMDQVSFDFLLSANVPFIKIGSG---------DSNNIPLI---KYAASKQKPLIISTGMLPSIEHVDNIYTTVKQ 131 (335)
Q Consensus 64 ~f~stpfd~~svd~l~~l~v~~~KIaS~---------d~~n~~LL---~~~a~~gkPvilStG~~~tl~Ei~~Av~~i~~ 131 (335)
.+++..=+.+.+..+.+.|+|++=+|-. +.+...|- +.+.+.|+-+.+-..+.+..++++...+++..
T Consensus 8 ell~pag~l~~l~~ai~~GADaVY~G~~~~~~R~~a~nfs~~~l~e~i~~ah~~gkk~~V~~N~~~~~~~~~~~~~~l~~ 87 (347)
T COG0826 8 ELLAPAGNLEDLKAAIAAGADAVYIGEKEFGLRRRALNFSVEDLAEAVELAHSAGKKVYVAVNTLLHNDELETLERYLDR 87 (347)
T ss_pred eeecCCCCHHHHHHHHHcCCCEEEeCCcccccccccccCCHHHHHHHHHHHHHcCCeEEEEeccccccchhhHHHHHHHH
Confidence 3455566778888888888999888844 23344433 33444577555444433345555544444433
Q ss_pred -cCCCCceeecccCCCCCCCCcccccCceEEeeecCCCCCCccCCCchHHHHHHHHCCCCCeecCCCCC--ChHHHHHHH
Q psy17999 132 -YHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYPTPYHDINLNVIHTLRSRYPDIPIGYSGHEN--GVHVCYAAV 208 (335)
Q Consensus 132 -g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~s~YP~~~~~~nL~~i~~L~~~fp~~pVG~SdHt~--g~~~~~aAv 208 (335)
... | +....-.|+..|..+++.+|++|+-+|..+. ....+.-..
T Consensus 88 l~e~---------G------------------------vDaviv~Dpg~i~l~~e~~p~l~ih~S~q~~v~N~~~~~f~~ 134 (347)
T COG0826 88 LVEL---------G------------------------VDAVIVADPGLIMLARERGPDLPIHVSTQANVTNAETAKFWK 134 (347)
T ss_pred HHHc---------C------------------------CCEEEEcCHHHHHHHHHhCCCCcEEEeeeEecCCHHHHHHHH
Confidence 111 1 1123457899999999999999998887664 355566677
Q ss_pred HcCCc--EEEeccCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q psy17999 209 AMGAQ--IIEKHFTLDKSWKGSDHASSLTPPELKALVTGIR 247 (335)
Q Consensus 209 alGA~--vIEkH~tld~~~~G~Dh~~Sl~p~el~~lv~~ir 247 (335)
-+||. |+. |. |+-+|++++.+.+.
T Consensus 135 ~~G~~rvVl~------rE---------ls~~ei~~i~~~~~ 160 (347)
T COG0826 135 ELGAKRVVLP------RE---------LSLEEIKEIKEQTP 160 (347)
T ss_pred HcCCEEEEeC------cc---------CCHHHHHHHHHhCC
Confidence 88987 333 22 44568888888873
No 448
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=67.49 E-value=61 Score=32.31 Aligned_cols=66 Identities=9% Similarity=0.151 Sum_probs=44.2
Q ss_pred cCCHHHHHH-HHHHHHHcCCceEe--ccCC-----hhh-----HHHHHhCCCCEEEEcCCCCCCHHHHHHHHhcCCcEE
Q psy17999 45 EFSQEEYVM-LQQCADQVDIMFTA--SAMD-----QVS-----FDFLLSANVPFIKIGSGDSNNIPLIKYAASKQKPLI 110 (335)
Q Consensus 45 el~~e~~~~-L~~~~~~~Gi~f~s--tpfd-----~~s-----vd~l~~l~v~~~KIaS~d~~n~~LL~~~a~~gkPvi 110 (335)
.++.|++.. .+..++-....|+. -||- ++. ..++.+.|++.+||-.+.....+.++++.+.|.||+
T Consensus 77 ~Vtld~mi~H~~aV~Rga~~a~vVaDmPfgSY~~s~e~av~nA~rl~~eaGa~aVKlEGg~~~~~~~I~~l~~~GIPV~ 155 (332)
T PLN02424 77 PITLDEMLVHCRAVARGANRPLLVGDLPFGSYESSTDQAVESAVRMLKEGGMDAVKLEGGSPSRVTAAKAIVEAGIAVM 155 (332)
T ss_pred CcCHHHHHHHHHHHhccCCCCEEEeCCCCCCCCCCHHHHHHHHHHHHHHhCCcEEEECCCcHHHHHHHHHHHHcCCCEE
Confidence 355555443 34556666666655 3433 222 234456899999999886556799999999999999
No 449
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional
Probab=67.48 E-value=7.8 Score=35.50 Aligned_cols=43 Identities=9% Similarity=0.173 Sum_probs=32.7
Q ss_pred CchHHHHHHHHCCCCCe-ecCCCCCChHHHHHHHHcCCc-EEEec
Q psy17999 176 NLNVIHTLRSRYPDIPI-GYSGHENGVHVCYAAVAMGAQ-IIEKH 218 (335)
Q Consensus 176 nL~~i~~L~~~fp~~pV-G~SdHt~g~~~~~aAvalGA~-vIEkH 218 (335)
.+..+..|++.+|+++| .+|+|.....+..++...||. +|.|.
T Consensus 55 Gl~~~~~l~~~~p~~~iIvlt~~~~~~~~~~~~~~~Ga~gyl~K~ 99 (207)
T PRK11475 55 GLSCLTELAIKFPRMRRLVIADDDIEARLIGSLSPSPLDGVLSKA 99 (207)
T ss_pred HHHHHHHHHHHCCCCCEEEEeCCCCHHHHHHHHHHcCCeEEEecC
Confidence 47788999999999997 688886654444555578997 88874
No 450
>PF01208 URO-D: Uroporphyrinogen decarboxylase (URO-D); InterPro: IPR000257 Uroporphyrinogen decarboxylase (URO-D), the fifth enzyme of the haem biosynthetic pathway, catalyses the sequential decarboxylation of the four acetyl side chains of uroporphyrinogen to yield coproporphyrinogen []. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP). The sequence of URO-D has been well conserved throughout evolution. The best conserved region is located in the N-terminal section; it contains a perfectly conserved hexapeptide. There are two arginine residues in this hexapeptide which could be involved in the binding, via salt bridges, to the carboxyl groups of the propionate side chains of the substrate. The crystal structure of human uroporphyrinogen decarboxylase shows it as comprised of a single domain containing a (beta/alpha)8-barrel with a deep active site cleft formed by loops at the C-terminal ends of the barrel strands. URO-D is a dimer in solution. Dimerisation juxtaposes the active site clefts of the monomers, suggesting a functionally important interaction between the catalytic centres [].; GO: 0004853 uroporphyrinogen decarboxylase activity, 0006779 porphyrin-containing compound biosynthetic process; PDB: 4EXQ_A 2INF_C 1J93_A 3GW0_A 1R3Q_A 1JPH_A 1JPI_A 3GVR_A 3GVW_A 3GVV_A ....
Probab=67.45 E-value=33 Score=33.13 Aligned_cols=82 Identities=7% Similarity=0.064 Sum_probs=50.5
Q ss_pred cCCHHHHHHHHHHHHHcCC-ceEe--ccCChhhHHHHHhCCCCEEEEcCCCCCCH-HHHHHHHhcCCcEEEe---C-C--
Q psy17999 45 EFSQEEYVMLQQCADQVDI-MFTA--SAMDQVSFDFLLSANVPFIKIGSGDSNNI-PLIKYAASKQKPLIIS---T-G-- 114 (335)
Q Consensus 45 el~~e~~~~L~~~~~~~Gi-~f~s--tpfd~~svd~l~~l~v~~~KIaS~d~~n~-~LL~~~a~~gkPvilS---t-G-- 114 (335)
++....++++.+.+++.|. .++. .-.....++.+.++|++++-+... .|+ ...+.++. +-+|.. + +
T Consensus 216 e~~~P~~k~i~~~i~~~g~~~~~lH~cG~~~~~~~~l~~~g~d~~~~~~~--~~~~~~~~~~~~--~~~l~Gni~~~~~l 291 (343)
T PF01208_consen 216 EFILPYLKKIIDAIKEAGKDPVILHICGNTTPILDDLADLGADVLSVDEK--VDLAEAKRKLGD--KIVLMGNIDPVSLL 291 (343)
T ss_dssp HHTHHHHHHHHHHHHHHETE-EEEEETTHG-GGHHHHHTSS-SEEEE-TT--S-HHHHHHHHTT--SSEEEEEB-G-GGG
T ss_pred HHHHHHHHHHHHHHHHhCCCceEEEECCchHHHHHHHHhcCCCEEEEcCC--CCHHHHHHHhCC--CeEEECCCCccccc
Confidence 3556788999999999987 4443 334446789999999999888544 366 55555542 222211 1 1
Q ss_pred CCCCHHHHHHHHHHHHh
Q psy17999 115 MLPSIEHVDNIYTTVKQ 131 (335)
Q Consensus 115 ~~~tl~Ei~~Av~~i~~ 131 (335)
.+ |.+||.+.+..+..
T Consensus 292 ~g-t~eei~~~v~~~i~ 307 (343)
T PF01208_consen 292 FG-TPEEIEEEVKRLIE 307 (343)
T ss_dssp GS--HHHHHHHHHHHHH
T ss_pred cC-CHHHHHHHHHHHHH
Confidence 13 89999998876554
No 451
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=67.35 E-value=1.1e+02 Score=28.60 Aligned_cols=55 Identities=15% Similarity=-0.012 Sum_probs=35.1
Q ss_pred hhhHHHHHhCCCCEEEEcCCCCCCH-HHHHHHHhcCCcEEE-eCCCCCCHHHHHHHHH
Q psy17999 72 QVSFDFLLSANVPFIKIGSGDSNNI-PLIKYAASKQKPLII-STGMLPSIEHVDNIYT 127 (335)
Q Consensus 72 ~~svd~l~~l~v~~~KIaS~d~~n~-~LL~~~a~~gkPvil-StG~~~tl~Ei~~Av~ 127 (335)
+.-++.+.+.|++.+-++--...+. ++++++.+.|...++ =+..+ +.+.++.+++
T Consensus 94 ~~fi~~~~~aG~~giiipDl~~ee~~~~~~~~~~~g~~~i~~i~P~T-~~~~i~~i~~ 150 (242)
T cd04724 94 ERFLRDAKEAGVDGLIIPDLPPEEAEEFREAAKEYGLDLIFLVAPTT-PDERIKKIAE 150 (242)
T ss_pred HHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCC-CHHHHHHHHh
Confidence 3447778889999998853322233 577777778875444 44445 5666766544
No 452
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=67.35 E-value=90 Score=27.64 Aligned_cols=79 Identities=11% Similarity=0.037 Sum_probs=45.4
Q ss_pred cCCHHHHHHHHHHHHHcCCceEeccCCh-hhHHHHHhCCCCEEEEcCCCCCC-HHHHHHHHhcCCcEEEeCCCCCCHHHH
Q psy17999 45 EFSQEEYVMLQQCADQVDIMFTASAMDQ-VSFDFLLSANVPFIKIGSGDSNN-IPLIKYAASKQKPLIISTGMLPSIEHV 122 (335)
Q Consensus 45 el~~e~~~~L~~~~~~~Gi~f~stpfd~-~svd~l~~l~v~~~KIaS~d~~n-~~LL~~~a~~gkPvilStG~~~tl~Ei 122 (335)
.++.+..++++++.. .-+.+-....+. +-++.+.+.|++.+.+......+ ...++.+.+.+..+++..... +..|.
T Consensus 42 ~~~~~~v~~i~~~~~-~~v~v~lm~~~~~~~~~~~~~~gadgv~vh~~~~~~~~~~~~~~~~~g~~~~~~~~~~-t~~e~ 119 (210)
T TIGR01163 42 TFGPPVLEALRKYTD-LPIDVHLMVENPDRYIEDFAEAGADIITVHPEASEHIHRLLQLIKDLGAKAGIVLNPA-TPLEF 119 (210)
T ss_pred ccCHHHHHHHHhcCC-CcEEEEeeeCCHHHHHHHHHHcCCCEEEEccCCchhHHHHHHHHHHcCCcEEEEECCC-CCHHH
Confidence 356666666665422 222222333333 33567778899999988764322 245566666787777776666 55554
Q ss_pred HHH
Q psy17999 123 DNI 125 (335)
Q Consensus 123 ~~A 125 (335)
.++
T Consensus 120 ~~~ 122 (210)
T TIGR01163 120 LEY 122 (210)
T ss_pred HHH
Confidence 444
No 453
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=67.25 E-value=1.5e+02 Score=30.08 Aligned_cols=131 Identities=14% Similarity=0.119 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHcCCceEe-c--cC--ChhhHHHHHhCCCCEEEEcCC-CCCC-HHHHHHHHhcCCcEEEe--CCCCCCH
Q psy17999 49 EEYVMLQQCADQVDIMFTA-S--AM--DQVSFDFLLSANVPFIKIGSG-DSNN-IPLIKYAASKQKPLIIS--TGMLPSI 119 (335)
Q Consensus 49 e~~~~L~~~~~~~Gi~f~s-t--pf--d~~svd~l~~l~v~~~KIaS~-d~~n-~~LL~~~a~~gkPvilS--tG~~~tl 119 (335)
+....+++.++..+..++. . .. -...++.+.++|++++-+... +..+ ...++++-+.|.++++. +... +.
T Consensus 43 ~~~~~i~~l~~~~~~~~ii~D~kl~d~g~~~v~~a~~aGAdgV~v~g~~~~~~~~~~i~~a~~~G~~~~~g~~s~~t-~~ 121 (430)
T PRK07028 43 EGMNAIRTLRKNFPDHTIVADMKTMDTGAIEVEMAAKAGADIVCILGLADDSTIEDAVRAARKYGVRLMADLINVPD-PV 121 (430)
T ss_pred hhHHHHHHHHHHCCCCEEEEEeeeccchHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHcCCEEEEEecCCCC-HH
Confidence 3466777777777644432 1 01 244788999999999887543 2212 35667777789998873 2222 24
Q ss_pred HHHHHHHHHHHhcCCCCceeecccCCCCCCCCcccccCceEEee-ecC--CCCCCccCCCchHHHHHHHHCCCCCeecCC
Q psy17999 120 EHVDNIYTTVKQYHSNLSILHCVSAYPTPYPTVKQYHSNLSILH-CVS--AYPTPYHDINLNVIHTLRSRYPDIPIGYSG 196 (335)
Q Consensus 120 ~Ei~~Av~~i~~g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llH-C~s--~YP~~~~~~nL~~i~~L~~~fp~~pVG~Sd 196 (335)
+.+..+.+ .|. +++.+| +++ .++ ..-+..+..+++.+ ++||...+
T Consensus 122 e~~~~a~~---~Ga------------------------D~I~~~pg~~~~~~~----~~~~~~l~~l~~~~-~iPI~a~G 169 (430)
T PRK07028 122 KRAVELEE---LGV------------------------DYINVHVGIDQQMLG----KDPLELLKEVSEEV-SIPIAVAG 169 (430)
T ss_pred HHHHHHHh---cCC------------------------CEEEEEeccchhhcC----CChHHHHHHHHhhC-CCcEEEEC
Confidence 44433332 232 333333 221 111 12245778888877 68885433
Q ss_pred CCCChHHHHHHHHcCCc
Q psy17999 197 HENGVHVCYAAVAMGAQ 213 (335)
Q Consensus 197 Ht~g~~~~~aAvalGA~ 213 (335)
-....-...+++.||+
T Consensus 170 -GI~~~n~~~~l~aGAd 185 (430)
T PRK07028 170 -GLDAETAAKAVAAGAD 185 (430)
T ss_pred -CCCHHHHHHHHHcCCC
Confidence 1123444557788987
No 454
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=67.10 E-value=54 Score=33.23 Aligned_cols=73 Identities=16% Similarity=0.180 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHcCCceEe---ccCC-hhhHHHHHhCCCCEEEEcCCC------CCCHHHHHHHHh-cCCcEEEeCCCCCC
Q psy17999 50 EYVMLQQCADQVDIMFTA---SAMD-QVSFDFLLSANVPFIKIGSGD------SNNIPLIKYAAS-KQKPLIISTGMLPS 118 (335)
Q Consensus 50 ~~~~L~~~~~~~Gi~f~s---tpfd-~~svd~l~~l~v~~~KIaS~d------~~n~~LL~~~a~-~gkPvilStG~~~t 118 (335)
...+..++|+++|+.++. |+.+ .+.+..+.++|+|++++..+- ..-+.+|+++.+ .+.||++.-|.+
T Consensus 95 ~~~~~i~~a~~~G~~~~~g~~s~~t~~e~~~~a~~~GaD~I~~~pg~~~~~~~~~~~~~l~~l~~~~~iPI~a~GGI~-- 172 (430)
T PRK07028 95 TIEDAVRAARKYGVRLMADLINVPDPVKRAVELEELGVDYINVHVGIDQQMLGKDPLELLKEVSEEVSIPIAVAGGLD-- 172 (430)
T ss_pred HHHHHHHHHHHcCCEEEEEecCCCCHHHHHHHHHhcCCCEEEEEeccchhhcCCChHHHHHHHHhhCCCcEEEECCCC--
Confidence 457888999999988875 6655 344566778899999987642 222467888764 478998877765
Q ss_pred HHHHHH
Q psy17999 119 IEHVDN 124 (335)
Q Consensus 119 l~Ei~~ 124 (335)
.+.+..
T Consensus 173 ~~n~~~ 178 (430)
T PRK07028 173 AETAAK 178 (430)
T ss_pred HHHHHH
Confidence 444443
No 455
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=66.93 E-value=37 Score=33.87 Aligned_cols=131 Identities=9% Similarity=0.091 Sum_probs=70.5
Q ss_pred CCCCcEEEeecccccccccccccCCCCCCC--CCCcccHHHHHHhhcCCHHHHHHHHHHHHH--cCCceEec--------
Q psy17999 1 ECGADCVKFQKSCLSTKFTQSALDRPYLSP--HAWANTYGQHKQHLEFSQEEYVMLQQCADQ--VDIMFTAS-------- 68 (335)
Q Consensus 1 ~aGaDaVKFQ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~el~~e~~~~L~~~~~~--~Gi~f~st-------- 68 (335)
+||.|.|-..--.- |--.++.+|+... ..||.+ +.++..|..|=+..+++.|-. .|+.+..+
T Consensus 170 ~AGfDGVEIh~ahG---yLl~qFLSp~~N~RtDeYGGs---lENR~Rf~~Eiv~aVr~~vg~~~igvRis~~~~~~~~~~ 243 (362)
T PRK10605 170 EAGFDLVELHSAHG---YLLHQFLSPSSNQRTDQYGGS---VENRARLVLEVVDAGIAEWGADRIGIRISPLGTFNNVDN 243 (362)
T ss_pred HcCCCEEEEccccc---chHHHhcCCcCCCCCCcCCCc---HHHHHHHHHHHHHHHHHHcCCCeEEEEECCccccccCCC
Confidence 48999987653110 1112222333221 135543 445567888888888888743 23322111
Q ss_pred cCChhh-----HHHHHhCCCCEEEEcCCCCC-----CHHHHHHHHh-cCCcEEEeCCCCCCHHHHHHHHHHHHhcCCCCc
Q psy17999 69 AMDQVS-----FDFLLSANVPFIKIGSGDSN-----NIPLIKYAAS-KQKPLIISTGMLPSIEHVDNIYTTVKQYHSNLS 137 (335)
Q Consensus 69 pfd~~s-----vd~l~~l~v~~~KIaS~d~~-----n~~LL~~~a~-~gkPvilStG~~~tl~Ei~~Av~~i~~g~~~~~ 137 (335)
-.+.+. +..|++.|+|++=|.+++.. +.++-+++.+ ++.||+.. |.- |.++.+++ |.+|.. .
T Consensus 244 G~~~~e~~~~~~~~L~~~giD~i~vs~~~~~~~~~~~~~~~~~ik~~~~~pv~~~-G~~-~~~~ae~~---i~~G~~--D 316 (362)
T PRK10605 244 GPNEEADALYLIEQLGKRGIAYLHMSEPDWAGGEPYSDAFREKVRARFHGVIIGA-GAY-TAEKAETL---IGKGLI--D 316 (362)
T ss_pred CCCHHHHHHHHHHHHHHcCCCEEEeccccccCCccccHHHHHHHHHHCCCCEEEe-CCC-CHHHHHHH---HHcCCC--C
Confidence 123222 35666778999999876432 3445455543 46787766 545 77766655 444544 3
Q ss_pred eeecccC
Q psy17999 138 ILHCVSA 144 (335)
Q Consensus 138 ~~~c~~g 144 (335)
++-.-|.
T Consensus 317 ~V~~gR~ 323 (362)
T PRK10605 317 AVAFGRD 323 (362)
T ss_pred EEEECHH
Confidence 4444443
No 456
>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=66.92 E-value=94 Score=27.70 Aligned_cols=63 Identities=16% Similarity=0.118 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHcCCceEeccCCh-----hhHHHHHhCCCCEEEEcCCCCCCHHHHHHHHhcCCcEEEe
Q psy17999 49 EEYVMLQQCADQVDIMFTASAMDQ-----VSFDFLLSANVPFIKIGSGDSNNIPLIKYAASKQKPLIIS 112 (335)
Q Consensus 49 e~~~~L~~~~~~~Gi~f~stpfd~-----~svd~l~~l~v~~~KIaS~d~~n~~LL~~~a~~gkPvilS 112 (335)
..+..+.+.|++.|........+. +.++.+.+.++|.+-|.+.+. +.+.++.+.+.|.|+++-
T Consensus 16 ~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~~~~-~~~~~~~~~~~~ipvV~~ 83 (266)
T cd06278 16 ELLEALSRALQARGYQPLLINTDDDEDLDAALRQLLQYRVDGVIVTSGTL-SSELAEECRRNGIPVVLI 83 (266)
T ss_pred HHHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHHcCCCEEEEecCCC-CHHHHHHHhhcCCCEEEE
Confidence 345567889999998876554432 123445567899998877664 456788888889998765
No 457
>PF01876 RNase_P_p30: RNase P subunit p30; InterPro: IPR002738 Members of this protein family are part of the ribonuclease P complex () that takes part in endonucleolytic cleavage of RNA, removing 5'-extra-nucleotide from tRNA precursor. This process is essential for tRNA processing.; GO: 0004540 ribonuclease activity, 0008033 tRNA processing; PDB: 1V77_A 2CZV_A.
Probab=66.90 E-value=7.9 Score=33.45 Aligned_cols=78 Identities=13% Similarity=0.130 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHcCCceEeccC--------ChhhHHHHHhCCCCEEEEcCCCCC------------CHHHHHHHHhcCCc
Q psy17999 49 EEYVMLQQCADQVDIMFTASAM--------DQVSFDFLLSANVPFIKIGSGDSN------------NIPLIKYAASKQKP 108 (335)
Q Consensus 49 e~~~~L~~~~~~~Gi~f~stpf--------d~~svd~l~~l~v~~~KIaS~d~~------------n~~LL~~~a~~gkP 108 (335)
..-+.+...|.+..+++++-++ +...+..+.+-|+ ++-|.-..+- |...|-.+++. +|
T Consensus 33 ~~~~~~~~a~~~~~vDiIt~d~~~~~~~~~~~~~~~~a~~~gi-~~EI~~~~~l~~~~~~r~~~~~~~~~l~~~~~~-~~ 110 (150)
T PF01876_consen 33 GSEKAFRAACSDPRVDIITFDLTERLPFYIKRKQARLAIERGI-FFEISYSPLLRSDGSNRRNFISNARRLIRLTKK-KN 110 (150)
T ss_dssp S-HHHHHHHHHTT--SEEE-TTTTSSS-S--HHHHHHHHHHT--EEEEESHHHHHS-HHHHHHHHHHHHHHHHHHHH---
T ss_pred CCHHHHHHHHhcCCCCEEEeCcccccccccCHHHHHHHHHCCE-EEEEEehHhhccCcHHHHHHHHHHHHHHHHhCC-CC
Confidence 4456677888888899998765 3345667777776 5555544443 44444444444 99
Q ss_pred EEEeCCCCCCHHHHHHHHHHH
Q psy17999 109 LIISTGMLPSIEHVDNIYTTV 129 (335)
Q Consensus 109 vilStG~~~tl~Ei~~Av~~i 129 (335)
+|||+|.. +.-|+..=.+.+
T Consensus 111 iiiSSgA~-~~~elr~P~dv~ 130 (150)
T PF01876_consen 111 IIISSGAS-SPLELRSPRDVI 130 (150)
T ss_dssp EEEE---S-SGGG---HHHHH
T ss_pred EEEEcCCC-ChhhCcCHHHHH
Confidence 99999999 888888766654
No 458
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=66.87 E-value=1.4e+02 Score=29.81 Aligned_cols=114 Identities=11% Similarity=0.173 Sum_probs=68.9
Q ss_pred hcCCHHHHHHHHHHHHHcCCceEeccCChhhHHHHHhCCCCEEEEcCCC----------CCCH-----------------
Q psy17999 44 LEFSQEEYVMLQQCADQVDIMFTASAMDQVSFDFLLSANVPFIKIGSGD----------SNNI----------------- 96 (335)
Q Consensus 44 ~el~~e~~~~L~~~~~~~Gi~f~stpfd~~svd~l~~l~v~~~KIaS~d----------~~n~----------------- 96 (335)
-+|+.++..++.+--. +++..+.+.|.|.+.|..+. .+|.
T Consensus 132 ~~mt~~eI~~ii~~f~-------------~AA~~a~~aGfDgVeih~ahGyLl~qFLSp~~N~RtDeYGGslenR~Rf~~ 198 (361)
T cd04747 132 REMTEADIDDVIAAFA-------------RAAADARRLGFDGIELHGAHGYLIDQFFWAGTNRRADGYGGSLAARSRFAA 198 (361)
T ss_pred ccCCHHHHHHHHHHHH-------------HHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHHHHHH
Confidence 3699998887775432 35566777788888887665 3321
Q ss_pred HHHHHHHhc-C--CcEEEeCCC----------CCCHHHHHHHHHHHHhcCCCCceeecccCCCCCCCCcccccCceEEee
Q psy17999 97 PLIKYAASK-Q--KPLIISTGM----------LPSIEHVDNIYTTVKQYHSNLSILHCVSAYPTPYPTVKQYHSNLSILH 163 (335)
Q Consensus 97 ~LL~~~a~~-g--kPvilStG~----------~~tl~Ei~~Av~~i~~g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llH 163 (335)
++++++.+. | .||.+.... +.|++|....+..+... .+-++|
T Consensus 199 eii~air~~vG~d~~v~vRis~~~~~~~~~~~g~~~~e~~~~~~~l~~~-------------------------gvd~i~ 253 (361)
T cd04747 199 EVVKAIRAAVGPDFPIILRFSQWKQQDYTARLADTPDELEALLAPLVDA-------------------------GVDIFH 253 (361)
T ss_pred HHHHHHHHHcCCCCeEEEEECcccccccccCCCCCHHHHHHHHHHHHHc-------------------------CCCEEE
Confidence 445555553 3 678764331 23788887777766541 233467
Q ss_pred ecCC-C-CCCccCCCchHHHHHHHHCCCCCeecCC
Q psy17999 164 CVSA-Y-PTPYHDINLNVIHTLRSRYPDIPIGYSG 196 (335)
Q Consensus 164 C~s~-Y-P~~~~~~nL~~i~~L~~~fp~~pVG~Sd 196 (335)
+++. | +..+...++.....+|+.. ++||.-.+
T Consensus 254 vs~g~~~~~~~~~~~~~~~~~~k~~~-~~pv~~~G 287 (361)
T cd04747 254 CSTRRFWEPEFEGSELNLAGWTKKLT-GLPTITVG 287 (361)
T ss_pred ecCCCccCCCcCccchhHHHHHHHHc-CCCEEEEC
Confidence 6553 2 2222334566667788888 78886544
No 459
>cd06277 PBP1_LacI_like_1 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=66.87 E-value=27 Score=31.55 Aligned_cols=62 Identities=18% Similarity=0.161 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHcCCceEeccCChhh------HHHHHhCCCCEEEEcCCCCCCHHHHHHHHhcCCcEEEe
Q psy17999 49 EEYVMLQQCADQVDIMFTASAMDQVS------FDFLLSANVPFIKIGSGDSNNIPLIKYAASKQKPLIIS 112 (335)
Q Consensus 49 e~~~~L~~~~~~~Gi~f~stpfd~~s------vd~l~~l~v~~~KIaS~d~~n~~LL~~~a~~gkPvilS 112 (335)
+-+..+.+.|++.|..++....+... ++.+.+.++|.+-|.+.+ +.+.++++.+.+.|+++-
T Consensus 19 ~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~--~~~~~~~l~~~~ipvV~~ 86 (268)
T cd06277 19 EIYRAIEEEAKKYGYNLILKFVSDEDEEEFELPSFLEDGKVDGIILLGGI--STEYIKEIKELGIPFVLV 86 (268)
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCCChHHHHHHHHHHHHCCCCEEEEeCCC--ChHHHHHHhhcCCCEEEE
Confidence 44556788999999887766554332 234556789999997754 345688888889997764
No 460
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=66.85 E-value=1.1e+02 Score=30.66 Aligned_cols=74 Identities=8% Similarity=0.047 Sum_probs=52.8
Q ss_pred CCHHHHHHHHHHHHHc-------CCceEecc--CChhhHHHHHhCCCCEEEEcCCCCCCHHHHHHHHhcCCcEEEeCCCC
Q psy17999 46 FSQEEYVMLQQCADQV-------DIMFTASA--MDQVSFDFLLSANVPFIKIGSGDSNNIPLIKYAASKQKPLIISTGML 116 (335)
Q Consensus 46 l~~e~~~~L~~~~~~~-------Gi~f~stp--fd~~svd~l~~l~v~~~KIaS~d~~n~~LL~~~a~~gkPvilStG~~ 116 (335)
|+.+++.+|.+..++. .|.+-+.| ++.+-++.+.++|+.-+-||=-.. |-..|+.+++. .
T Consensus 76 l~~~~l~~ll~~i~~~~~~~~~~eitiE~nP~~~~~e~l~~l~~~GvnRiSiGvQS~-~d~~L~~lgR~----------h 144 (390)
T PRK06582 76 MNPVIVEGIINKISNLAIIDNQTEITLETNPTSFETEKFKAFKLAGINRVSIGVQSL-KEDDLKKLGRT----------H 144 (390)
T ss_pred CCHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCcCCHHHHHHHHHCCCCEEEEECCcC-CHHHHHHcCCC----------C
Confidence 6788888888888773 35555666 566777888888888888875444 44777777652 3
Q ss_pred CCHHHHHHHHHHHHh
Q psy17999 117 PSIEHVDNIYTTVKQ 131 (335)
Q Consensus 117 ~tl~Ei~~Av~~i~~ 131 (335)
+.+++.+|++.+++
T Consensus 145 -~~~~~~~ai~~~~~ 158 (390)
T PRK06582 145 -DCMQAIKTIEAANT 158 (390)
T ss_pred -CHHHHHHHHHHHHH
Confidence 77888888877654
No 461
>cd06279 PBP1_LacI_like_3 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=66.79 E-value=28 Score=32.01 Aligned_cols=85 Identities=9% Similarity=0.048 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHcCCceEeccCC--hhhHHHHHhCCCCEEEEcCCCCCCHHHHHHHHhcCCcEEEe-CCCC-------C-
Q psy17999 49 EEYVMLQQCADQVDIMFTASAMD--QVSFDFLLSANVPFIKIGSGDSNNIPLIKYAASKQKPLIIS-TGML-------P- 117 (335)
Q Consensus 49 e~~~~L~~~~~~~Gi~f~stpfd--~~svd~l~~l~v~~~KIaS~d~~n~~LL~~~a~~gkPvilS-tG~~-------~- 117 (335)
+-...+.+.|++.|..++....+ .+..+.+.+.++|.+-+-+.+ .+.+.++.+.+.|.||++= +... .
T Consensus 21 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~dgiii~~~~-~~~~~~~~~~~~~ipvV~~~~~~~~~~~~v~~d 99 (283)
T cd06279 21 QFLAGVAEVLDAAGVNLLLLPASSEDSDSALVVSALVDGFIVYGVP-RDDPLVAALLRRGLPVVVVDQPLPPGVPSVGID 99 (283)
T ss_pred HHHHHHHHHHHHCCCEEEEecCccHHHHHHHHHhcCCCEEEEeCCC-CChHHHHHHHHcCCCEEEEecCCCCCCCEEeeC
Confidence 45666789999999887765543 355667777889998887665 3457888888889998743 2211 0
Q ss_pred CHHHHHHHHHHHHh-cCC
Q psy17999 118 SIEHVDNIYTTVKQ-YHS 134 (335)
Q Consensus 118 tl~Ei~~Av~~i~~-g~~ 134 (335)
..+--..+++++.+ |..
T Consensus 100 ~~~~g~~~~~~L~~~g~~ 117 (283)
T cd06279 100 DRAAAREAARHLLDLGHR 117 (283)
T ss_pred cHHHHHHHHHHHHHcCCC
Confidence 23444556676665 443
No 462
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=66.72 E-value=1.1e+02 Score=28.49 Aligned_cols=131 Identities=9% Similarity=0.037 Sum_probs=76.1
Q ss_pred HHHHHHHHHHcCCceEe----c--cCChhh-HHHHHhCCCCEEEEcC--CCC--CCHHHHHHHHhcCCcEEEeCCCCCCH
Q psy17999 51 YVMLQQCADQVDIMFTA----S--AMDQVS-FDFLLSANVPFIKIGS--GDS--NNIPLIKYAASKQKPLIISTGMLPSI 119 (335)
Q Consensus 51 ~~~L~~~~~~~Gi~f~s----t--pfd~~s-vd~l~~l~v~~~KIaS--~d~--~n~~LL~~~a~~gkPvilStG~~~tl 119 (335)
+..+.+..+...+++.. + ..+++. ++.+.+.|++.+-|+. .+. .-..+++++.+.|...++-....-+.
T Consensus 63 ~~~v~~vr~~~~~Pl~lM~y~n~~~~~~~~~i~~~~~~Gadgvii~dlp~e~~~~~~~~~~~~~~~Gl~~~~~v~p~T~~ 142 (244)
T PRK13125 63 WPLLEEVRKDVSVPIILMTYLEDYVDSLDNFLNMARDVGADGVLFPDLLIDYPDDLEKYVEIIKNKGLKPVFFTSPKFPD 142 (244)
T ss_pred HHHHHHHhccCCCCEEEEEecchhhhCHHHHHHHHHHcCCCEEEECCCCCCcHHHHHHHHHHHHHcCCCEEEEECCCCCH
Confidence 45666666666777643 2 334544 6778889999999974 221 22367888888898777776655157
Q ss_pred HHHHHHHHHHHhcCCCCceeecccCCCCCCCCcccccCceEEeeecCCCCCCcc--CCC-chHHHHHHHHCCCCCe--ec
Q psy17999 120 EHVDNIYTTVKQYHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYPTPYH--DIN-LNVIHTLRSRYPDIPI--GY 194 (335)
Q Consensus 120 ~Ei~~Av~~i~~g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~s~YP~~~~--~~n-L~~i~~L~~~fp~~pV--G~ 194 (335)
++++..++.. . .+.+| |..|.--. ..+ +..+..+|+..++.|| |+
T Consensus 143 e~l~~~~~~~----~-----------------------~~l~m---sv~~~~g~~~~~~~~~~i~~lr~~~~~~~i~v~g 192 (244)
T PRK13125 143 LLIHRLSKLS----P-----------------------LFIYY---GLRPATGVPLPVSVERNIKRVRNLVGNKYLVVGF 192 (244)
T ss_pred HHHHHHHHhC----C-----------------------CEEEE---EeCCCCCCCchHHHHHHHHHHHHhcCCCCEEEeC
Confidence 7777665531 1 22222 22332111 122 3367788887755665 33
Q ss_pred CCCCCChHHHHHHHHcCCc
Q psy17999 195 SGHENGVHVCYAAVAMGAQ 213 (335)
Q Consensus 195 SdHt~g~~~~~aAvalGA~ 213 (335)
.=+ .......++..||+
T Consensus 193 GI~--~~e~i~~~~~~gaD 209 (244)
T PRK13125 193 GLD--SPEDARDALSAGAD 209 (244)
T ss_pred CcC--CHHHHHHHHHcCCC
Confidence 222 23445556688988
No 463
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=66.58 E-value=46 Score=34.45 Aligned_cols=66 Identities=15% Similarity=0.231 Sum_probs=41.4
Q ss_pred CHHHHHHHHHHHHHcCCceEeccCChh------hHHHHHhCCCCEEEEcCCCCC---CHHHHHHHHhcCCcEE-EeCC
Q psy17999 47 SQEEYVMLQQCADQVDIMFTASAMDQV------SFDFLLSANVPFIKIGSGDSN---NIPLIKYAASKQKPLI-ISTG 114 (335)
Q Consensus 47 ~~e~~~~L~~~~~~~Gi~f~stpfd~~------svd~l~~l~v~~~KIaS~d~~---n~~LL~~~a~~gkPvi-lStG 114 (335)
+.+...++.+ + +.++.++.|-+|.+ -++.+.++|.|++||+..--+ +..|++......+|+| ++.|
T Consensus 90 ~~~~~~~l~~-~-~~~~kvI~S~Hdf~~~~l~~~~~~~~~~gaDi~Kia~~a~~~~D~l~ll~~~~~~~~p~i~i~MG 165 (477)
T PRK09310 90 PKEALIRIRK-L-HPKIKIILSYHTSEHEDIIQLYNEMLASAADYYKIAVSSSSSTDLLNIIHQKRSLPENTTVLCMG 165 (477)
T ss_pred CHHHHHHHHH-h-CCCCEEEEEcCCCCcchHHHHHHHHHHcCCCEEEEeeCCCCHHHHHHHHHHHhhCCCCEEEEEeC
Confidence 4445555522 2 23889999998743 345566789999999877444 4455555555677844 5544
No 464
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=66.57 E-value=63 Score=32.77 Aligned_cols=129 Identities=12% Similarity=0.192 Sum_probs=66.8
Q ss_pred CCHHHHHHHHhc-CCcEEEeCCCCCCHHHHHHHHHHHHhcCCCCceeecccCCCCCCCCcccccCceEEeeecCCCCCCc
Q psy17999 94 NNIPLIKYAASK-QKPLIISTGMLPSIEHVDNIYTTVKQYHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYPTPY 172 (335)
Q Consensus 94 ~n~~LL~~~a~~-gkPvilStG~~~tl~Ei~~Av~~i~~g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~s~YP~~~ 172 (335)
.+|.-|+.+.+. +.|||++ |.. +.++...|++. |-. -|++-..|=+ ++ .+ .
T Consensus 240 ~tW~~i~~lr~~~~~pvivK-gV~-~~~dA~~a~~~---G~d--~I~vsnhGGr-----------~~---d~------~- 291 (383)
T cd03332 240 LTWEDLAFLREWTDLPIVLK-GIL-HPDDARRAVEA---GVD--GVVVSNHGGR-----------QV---DG------S- 291 (383)
T ss_pred CCHHHHHHHHHhcCCCEEEe-cCC-CHHHHHHHHHC---CCC--EEEEcCCCCc-----------CC---CC------C-
Confidence 467778877764 8999999 655 78888877663 332 1111111111 10 00 0
Q ss_pred cCCCchHHHHHHHHCC-CCCeecCC-CCCChHHHHHHHHcCCc--EEEeccCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q psy17999 173 HDINLNVIHTLRSRYP-DIPIGYSG-HENGVHVCYAAVAMGAQ--IIEKHFTLDKSWKGSDHASSLTPPELKALVTGIRD 248 (335)
Q Consensus 173 ~~~nL~~i~~L~~~fp-~~pVG~Sd-Ht~g~~~~~aAvalGA~--vIEkH~tld~~~~G~Dh~~Sl~p~el~~lv~~ir~ 248 (335)
-.-+..++.+++.++ ++||-.++ =..|..+. .|.||||+ .|-+-|---=...|.+. --.-++.|.++++.
T Consensus 292 -~~t~~~L~ei~~~~~~~~~vi~dGGIr~G~Dv~-KALaLGA~~v~iGr~~l~~l~~~G~~g----v~~~l~~l~~El~~ 365 (383)
T cd03332 292 -IAALDALPEIVEAVGDRLTVLFDSGVRTGADIM-KALALGAKAVLIGRPYAYGLALGGEDG----VEHVLRNLLAELDL 365 (383)
T ss_pred -cCHHHHHHHHHHHhcCCCeEEEeCCcCcHHHHH-HHHHcCCCEEEEcHHHHHHHHhccHHH----HHHHHHHHHHHHHH
Confidence 112446677776663 47885443 33344444 58999998 44433321000111110 11234455556666
Q ss_pred HHHHhCCC
Q psy17999 249 IEQSLGSP 256 (335)
Q Consensus 249 ~~~alG~~ 256 (335)
+-..+|..
T Consensus 366 ~m~l~G~~ 373 (383)
T cd03332 366 TMGLAGIR 373 (383)
T ss_pred HHHHHCCC
Confidence 66667743
No 465
>PRK14725 pyruvate kinase; Provisional
Probab=66.55 E-value=35 Score=36.65 Aligned_cols=83 Identities=18% Similarity=0.255 Sum_probs=61.6
Q ss_pred CHHHHHHHHHHHHHc---CCceEeccCChhhHHHHHhC-------CCCEEEEcCCCCCC------HH-----HHHHHHhc
Q psy17999 47 SQEEYVMLQQCADQV---DIMFTASAMDQVSFDFLLSA-------NVPFIKIGSGDSNN------IP-----LIKYAASK 105 (335)
Q Consensus 47 ~~e~~~~L~~~~~~~---Gi~f~stpfd~~svd~l~~l-------~v~~~KIaS~d~~n------~~-----LL~~~a~~ 105 (335)
+.++...|+++.++. ++.+++=.-..++++-|.++ ..|.+-||=+|+-- .| +|..+-..
T Consensus 455 s~~DV~~lr~~L~~~g~~~~~IiaKIEt~~av~nL~eIl~~am~~~~DGIMIARGDLgvEi~~e~lp~iQk~Ii~~c~~~ 534 (608)
T PRK14725 455 SPEDVRLLLDALEKLGADDLGVVLKIETRRAFENLPRILLEAMRHPRFGVMIARGDLAVEVGFERLAEVQEEILWLCEAA 534 (608)
T ss_pred CHHHHHHHHHHHHHcCCCCCcEEEEECCHHHHHHHHHHHHhhccCCCcEEEEECCccccccCHHHHHHHHHHHHHHHHHc
Confidence 567888888888876 47788888888887766653 13899999998753 23 34455567
Q ss_pred CCcEEEeCCC--------CCCHHHHHHHHHHH
Q psy17999 106 QKPLIISTGM--------LPSIEHVDNIYTTV 129 (335)
Q Consensus 106 gkPvilStG~--------~~tl~Ei~~Av~~i 129 (335)
+||||+.|=| .||-.|+-.++..+
T Consensus 535 ~kPVI~ATQmLESM~~~p~PTRAEvtDVAnAv 566 (608)
T PRK14725 535 HVPVIWATQVLESLAKKGLPSRAEITDAAMAL 566 (608)
T ss_pred CCCEEEEcchHhhhccCCCCCchhHHHHHhhh
Confidence 9999998753 35889999988776
No 466
>COG4029 Uncharacterized protein conserved in archaea [Function unknown]
Probab=66.49 E-value=31 Score=29.77 Aligned_cols=63 Identities=14% Similarity=0.254 Sum_probs=49.2
Q ss_pred CEEEEc-CCCCCCHHHHHHHHhcCCcEEEeC---CC--CCCHHHHHHHHHHHHh-cCCCCceeecccCCCCC
Q psy17999 84 PFIKIG-SGDSNNIPLIKYAASKQKPLIIST---GM--LPSIEHVDNIYTTVKQ-YHSNLSILHCVSAYPTP 148 (335)
Q Consensus 84 ~~~KIa-S~d~~n~~LL~~~a~~gkPvilSt---G~--~~tl~Ei~~Av~~i~~-g~~~~~~~~c~~g~~~~ 148 (335)
.+|-++ |.-++--.|+.++-..+.||+++. |. .+..++++++++.+++ ..+ +|+.=+||++.+
T Consensus 7 k~ivlapsa~vsp~elv~~l~~~~~PvtiKeTCfGaii~G~Ed~v~klveriR~~d~~--~IF~KdRGfp~g 76 (142)
T COG4029 7 KYIVLAPSAGVSPKELVQKLLELSPPVTIKETCFGAIIDGPEDEVRKLVERIRELDGN--AIFSKDRGFPAG 76 (142)
T ss_pred EEEEEcCccCcChHHHHHHHHhcCCCeEeeeeeeeeeecCcHHHHHHHHHHHHHhccC--ceeecccCCCCC
Confidence 356666 777888899999999999999873 21 1488999999999998 433 577778987754
No 467
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=66.40 E-value=26 Score=33.13 Aligned_cols=54 Identities=19% Similarity=0.113 Sum_probs=42.9
Q ss_pred hhHHHHHhCCCCEEEEcCCC------CCCHHHHHHHHhc-CCcEEEeCCCCCCHHHHHHHHH
Q psy17999 73 VSFDFLLSANVPFIKIGSGD------SNNIPLIKYAASK-QKPLIISTGMLPSIEHVDNIYT 127 (335)
Q Consensus 73 ~svd~l~~l~v~~~KIaS~d------~~n~~LL~~~a~~-gkPvilStG~~~tl~Ei~~Av~ 127 (335)
+-++.++++|++.+-+-+.+ =.|+++++++++. +.|||.|-|.+ +++++..+.+
T Consensus 156 e~~~~~~~~g~~~ii~~~i~~~G~~~G~d~~~i~~~~~~~~ipvIasGGv~-s~eD~~~l~~ 216 (258)
T PRK01033 156 ELAKEYEALGAGEILLNSIDRDGTMKGYDLELLKSFRNALKIPLIALGGAG-SLDDIVEAIL 216 (258)
T ss_pred HHHHHHHHcCCCEEEEEccCCCCCcCCCCHHHHHHHHhhCCCCEEEeCCCC-CHHHHHHHHH
Confidence 33466778889988776443 2589999998874 88999999999 9999998764
No 468
>PRK08841 aspartate kinase; Validated
Probab=66.37 E-value=1.4e+02 Score=30.09 Aligned_cols=38 Identities=16% Similarity=0.274 Sum_probs=27.3
Q ss_pred EEEEcCCCCCCHHHHHHHHh-------c-CCcEEEeCCCCCCHHHH
Q psy17999 85 FIKIGSGDSNNIPLIKYAAS-------K-QKPLIISTGMLPSIEHV 122 (335)
Q Consensus 85 ~~KIaS~d~~n~~LL~~~a~-------~-gkPvilStG~~~tl~Ei 122 (335)
.+|.|...+.+...++.+++ . .+||++..||+..-+.+
T Consensus 5 V~KfGGtsv~~~~~i~~va~~I~~~~~~g~~vvvVvSa~~~~td~l 50 (392)
T PRK08841 5 VQKFGGTSVGSIERIQTVAEHIIKAKNDGNQVVVVVSAMAGETNRL 50 (392)
T ss_pred EEeECcccCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCchHHHHH
Confidence 67999999999888877664 2 35788788876344444
No 469
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=66.32 E-value=1.4e+02 Score=29.45 Aligned_cols=132 Identities=16% Similarity=0.138 Sum_probs=83.4
Q ss_pred hcCCHHHHHHHHHHHHHcCCceEeccCChhhHHHHHhCCCCEEEEcCCC----------CCCH-----------------
Q psy17999 44 LEFSQEEYVMLQQCADQVDIMFTASAMDQVSFDFLLSANVPFIKIGSGD----------SNNI----------------- 96 (335)
Q Consensus 44 ~el~~e~~~~L~~~~~~~Gi~f~stpfd~~svd~l~~l~v~~~KIaS~d----------~~n~----------------- 96 (335)
-+|+.+++.++.+.-. +++..+.+.|+|.+.|..+. .+|.
T Consensus 140 ~~mt~~eI~~ii~~f~-------------~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGslenR~rf~~ 206 (338)
T cd02933 140 RALTTEEIPGIVADFR-------------QAARNAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARFLL 206 (338)
T ss_pred CCCCHHHHHHHHHHHH-------------HHHHHHHHcCCCEEEEccccchhHHHhcCCccCCCCCcCCCcHHHhhhHHH
Confidence 4699999888776433 45677778888988887665 3332
Q ss_pred HHHHHHHhc-CC-cEEEeCCC---------CCCHHHHHHHHHHHHhcCCCCceeecccCCCCCCCCcccccCceEEeeec
Q psy17999 97 PLIKYAASK-QK-PLIISTGM---------LPSIEHVDNIYTTVKQYHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCV 165 (335)
Q Consensus 97 ~LL~~~a~~-gk-PvilStG~---------~~tl~Ei~~Av~~i~~g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~ 165 (335)
.+|+++.+. |. ||.+.... ..+++|....++.+.... +-++|.+
T Consensus 207 eii~air~~vg~d~v~vRis~~~~~~~~~~~~~~ee~~~~~~~l~~~g-------------------------~d~i~vs 261 (338)
T cd02933 207 EVVDAVAEAIGADRVGIRLSPFGTFNDMGDSDPEATFSYLAKELNKRG-------------------------LAYLHLV 261 (338)
T ss_pred HHHHHHHHHhCCCceEEEECccccCCCCCCCCCHHHHHHHHHHHHHcC-------------------------CcEEEEe
Confidence 455555543 44 77775531 137788877777776521 2233332
Q ss_pred CC-CCCCccCCCchHHHHHHHHCCCCCeecC-CCCCChHHHHHHHHcC-CcEEE
Q psy17999 166 SA-YPTPYHDINLNVIHTLRSRYPDIPIGYS-GHENGVHVCYAAVAMG-AQIIE 216 (335)
Q Consensus 166 s~-YP~~~~~~nL~~i~~L~~~fp~~pVG~S-dHt~g~~~~~aAvalG-A~vIE 216 (335)
.. |.......++.....+|+.. ++||.-+ +.+ ...+..+++-| |+++-
T Consensus 262 ~g~~~~~~~~~~~~~~~~ik~~~-~ipvi~~G~i~--~~~a~~~l~~g~~D~V~ 312 (338)
T cd02933 262 EPRVAGNPEDQPPDFLDFLRKAF-KGPLIAAGGYD--AESAEAALADGKADLVA 312 (338)
T ss_pred cCCCCCcccccchHHHHHHHHHc-CCCEEEECCCC--HHHHHHHHHcCCCCEEE
Confidence 21 22112567888888999998 8999554 444 66677788776 77665
No 470
>cd01149 HutB Hemin binding protein HutB. These proteins have been shown to function as initial receptors in ABC transport of hemin and hemoproteins in many eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=66.04 E-value=25 Score=31.92 Aligned_cols=66 Identities=15% Similarity=0.154 Sum_probs=49.0
Q ss_pred CceEeccCChhhHHHHHhCCCCEEEEcCCCCCCHHHHHHHHhcCCcEEEeCCCCCCHHHHHHHHHHHHh
Q psy17999 63 IMFTASAMDQVSFDFLLSANVPFIKIGSGDSNNIPLIKYAASKQKPLIISTGMLPSIEHVDNIYTTVKQ 131 (335)
Q Consensus 63 i~f~stpfd~~svd~l~~l~v~~~KIaS~d~~n~~LL~~~a~~gkPvilStG~~~tl~Ei~~Av~~i~~ 131 (335)
+..+-+ +..-.+|.+.++++|++ +.+....+...++.+.+.|.|+++-.... +++++.+.++.+..
T Consensus 40 v~~~g~-~~~~n~E~i~~l~PDlI-i~~~~~~~~~~~~~l~~~gipvv~~~~~~-~~~~~~~~~~~lg~ 105 (235)
T cd01149 40 LPDVGY-MRQLSAEGVLSLKPTLV-IASDEAGPPEALDQLRAAGVPVVTVPSTP-TLDGLLTKIRQVAQ 105 (235)
T ss_pred cCccCC-ccCcCHHHhhccCCCEE-EEcCCCCCHHHHHHHHHcCCeEEEecCCC-CHHHHHHHHHHHHH
Confidence 344433 33457899999999999 55666667788999999999998755445 78888887777765
No 471
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=66.03 E-value=1.2e+02 Score=29.53 Aligned_cols=105 Identities=20% Similarity=0.287 Sum_probs=65.4
Q ss_pred EEEcCCCCCCHHHHHHH----HhcCCcEEEeCCCCCCHHHHHHHHHHHHhcCCCCceeecccCCCCCCCCcccccCceEE
Q psy17999 86 IKIGSGDSNNIPLIKYA----ASKQKPLIISTGMLPSIEHVDNIYTTVKQYHSNLSILHCVSAYPTPYPTVKQYHSNLSI 161 (335)
Q Consensus 86 ~KIaS~d~~n~~LL~~~----a~~gkPvilStG~~~tl~Ei~~Av~~i~~g~~~~~~~~c~~g~~~~~~~~~~~~~~l~l 161 (335)
|=|++.++.|++.++.+ .+.+.||||.+..+ ..+ ++ +.
T Consensus 18 yav~AfN~~n~e~~~avi~aAe~~~sPvIlq~s~~-~~~-------~~--~~---------------------------- 59 (293)
T PRK07315 18 YAVGGFNTNNLEWTQAILRAAEAKKAPVLIQTSMG-AAK-------YM--GG---------------------------- 59 (293)
T ss_pred ceEEEEEECCHHHHHHHHHHHHHHCCCEEEEcCcc-HHh-------hc--Cc----------------------------
Confidence 55677788888777654 34689999998876 221 10 00
Q ss_pred eeecCCCCCCccCCCchHHHHHHHHCC-CCCeec-CCCCCChHHHHHHHHcCCcEEEeccCCCCCCCCCCCCCCCCHHHH
Q psy17999 162 LHCVSAYPTPYHDINLNVIHTLRSRYP-DIPIGY-SGHENGVHVCYAAVAMGAQIIEKHFTLDKSWKGSDHASSLTPPEL 239 (335)
Q Consensus 162 lHC~s~YP~~~~~~nL~~i~~L~~~fp-~~pVG~-SdHt~g~~~~~aAvalGA~vIEkH~tld~~~~G~Dh~~Sl~p~el 239 (335)
.+ .=-..+..+.+++. .+||.. =||. ....+..|+..|.+.|= +| . ..++.+|.
T Consensus 60 ----------~~-~~~~~~~~~a~~~~~~vPV~lHLDH~-~~~~i~~ai~~GftSVm----~d-------~-S~l~~eEn 115 (293)
T PRK07315 60 ----------YK-VCKNLIENLVESMGITVPVAIHLDHG-HYEDALECIEVGYTSIM----FD-------G-SHLPVEEN 115 (293)
T ss_pred ----------HH-HHHHHHHHHHHHcCCCCcEEEECCCC-CHHHHHHHHHcCCCEEE----Ec-------C-CCCCHHHH
Confidence 00 00122444555551 468865 5999 78888999999998654 32 1 23566777
Q ss_pred HHHHHHHHHHHHH
Q psy17999 240 KALVTGIRDIEQS 252 (335)
Q Consensus 240 ~~lv~~ir~~~~a 252 (335)
-++.+.++++-..
T Consensus 116 i~~t~~v~~~a~~ 128 (293)
T PRK07315 116 LKLAKEVVEKAHA 128 (293)
T ss_pred HHHHHHHHHHHHH
Confidence 7777777775544
No 472
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=66.00 E-value=15 Score=38.22 Aligned_cols=45 Identities=36% Similarity=0.704 Sum_probs=36.0
Q ss_pred chHHHHHHHHCCCCCee-cCCCCCChHHHHHHHHcCCc-EEEeccCCC
Q psy17999 177 LNVIHTLRSRYPDIPIG-YSGHENGVHVCYAAVAMGAQ-IIEKHFTLD 222 (335)
Q Consensus 177 L~~i~~L~~~fp~~pVG-~SdHt~g~~~~~aAvalGA~-vIEkH~tld 222 (335)
|..+..++++.|++||. .++|. .+..++.|+-.||- .|||=|.+|
T Consensus 64 l~ll~~i~~~~~~~pVI~~Tg~g-~i~~AV~A~k~GA~Dfl~KP~~~~ 110 (464)
T COG2204 64 LELLKEIKSRDPDLPVIVMTGHG-DIDTAVEALRLGAFDFLEKPFDLD 110 (464)
T ss_pred HHHHHHHHhhCCCCCEEEEeCCC-CHHHHHHHHhcCcceeeeCCCCHH
Confidence 77788888888999995 45554 48888899999996 999866543
No 473
>PRK09197 fructose-bisphosphate aldolase; Provisional
Probab=65.82 E-value=84 Score=31.58 Aligned_cols=36 Identities=14% Similarity=0.285 Sum_probs=26.5
Q ss_pred HHHHHHHHCCCCCeec-CCCCCC--hHHHHHHHHcCCcEE
Q psy17999 179 VIHTLRSRYPDIPIGY-SGHENG--VHVCYAAVAMGAQII 215 (335)
Q Consensus 179 ~i~~L~~~fp~~pVG~-SdHt~g--~~~~~aAvalGA~vI 215 (335)
.+..+.+++ .+||+. =||... ......|+.+|-+.+
T Consensus 83 ~v~~~A~~~-~VPValHLDHg~~~~~~~i~~ai~~g~~~v 121 (350)
T PRK09197 83 HVHEVAEHY-GVPVILHTDHCAKKLLPWIDGLLDAGEKHF 121 (350)
T ss_pred HHHHHHHHC-CCCEEEECCCCCCcchHHHHHHHHhhHHHH
Confidence 455677788 899976 599988 777777888874433
No 474
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=65.71 E-value=45 Score=28.84 Aligned_cols=66 Identities=12% Similarity=0.141 Sum_probs=47.9
Q ss_pred HHcCCceEeccCChhhHHHHHhCCCCEEEEcCC----------CCCCHHHHHHHHh-cCCcEEEeCCCCCCHHHHHHHH
Q psy17999 59 DQVDIMFTASAMDQVSFDFLLSANVPFIKIGSG----------DSNNIPLIKYAAS-KQKPLIISTGMLPSIEHVDNIY 126 (335)
Q Consensus 59 ~~~Gi~f~stpfd~~svd~l~~l~v~~~KIaS~----------d~~n~~LL~~~a~-~gkPvilStG~~~tl~Ei~~Av 126 (335)
...+..+..++.+.+.+..+.+.|+|++.+++. ....+.+++.+.+ .+.||+..-|.+ .+.+..+.
T Consensus 92 ~~~~~~~g~~~~t~~~~~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~a~GGi~--~~~i~~~~ 168 (196)
T cd00564 92 LGPDLIIGVSTHSLEEALRAEELGADYVGFGPVFPTPTKPGAGPPLGLELLREIAELVEIPVVAIGGIT--PENAAEVL 168 (196)
T ss_pred cCCCCEEEeeCCCHHHHHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhCCCCEEEECCCC--HHHHHHHH
Confidence 345777777778877777778889999988643 4456788888865 578998887665 46555543
No 475
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=65.53 E-value=25 Score=32.84 Aligned_cols=53 Identities=17% Similarity=0.286 Sum_probs=42.9
Q ss_pred hHHHHHhCCCCEEEEcCCCC------CCHHHHHHHHhc-CCcEEEeCCCCCCHHHHHHHHH
Q psy17999 74 SFDFLLSANVPFIKIGSGDS------NNIPLIKYAASK-QKPLIISTGMLPSIEHVDNIYT 127 (335)
Q Consensus 74 svd~l~~l~v~~~KIaS~d~------~n~~LL~~~a~~-gkPvilStG~~~tl~Ei~~Av~ 127 (335)
-++.+++.|++.+-+.+.+- .|+++++++.+. +.|||.+-|.+ |++++.++.+
T Consensus 151 ~~~~l~~~G~~~iiv~~~~~~g~~~G~d~~~i~~i~~~~~ipviasGGi~-s~~D~~~l~~ 210 (241)
T PRK14024 151 VLERLDSAGCSRYVVTDVTKDGTLTGPNLELLREVCARTDAPVVASGGVS-SLDDLRALAE 210 (241)
T ss_pred HHHHHHhcCCCEEEEEeecCCCCccCCCHHHHHHHHhhCCCCEEEeCCCC-CHHHHHHHhh
Confidence 34566788999887776543 489999999874 89999999999 9999998754
No 476
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=65.47 E-value=69 Score=30.71 Aligned_cols=170 Identities=20% Similarity=0.138 Sum_probs=0.0
Q ss_pred CCCCcEEEeecccccccccccccCCCCCCCCCCc-ccHHHHHHhhc--CCHHHHHHHHHHHH--HcCCceEeccC-----
Q psy17999 1 ECGADCVKFQKSCLSTKFTQSALDRPYLSPHAWA-NTYGQHKQHLE--FSQEEYVMLQQCAD--QVDIMFTASAM----- 70 (335)
Q Consensus 1 ~aGaDaVKFQ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~e--l~~e~~~~L~~~~~--~~Gi~f~stpf----- 70 (335)
++|||+|-++. ||..|...| ..+..+.+-++ ++.++..++.+..+ ...++++.--+
T Consensus 35 ~~GaD~iEiGi--------------PfSDP~ADGpvIq~A~~rAL~~G~~~~~~~~~~~~ir~~~~~~pivlm~Y~N~i~ 100 (259)
T PF00290_consen 35 EAGADIIEIGI--------------PFSDPVADGPVIQKASQRALKNGFTLEKIFELVKEIRKKEPDIPIVLMTYYNPIF 100 (259)
T ss_dssp HTTBSSEEEE----------------SSSCTTSSHHHHHHHHHHHHTT--HHHHHHHHHHHHHHCTSSEEEEEE-HHHHH
T ss_pred HcCCCEEEECC--------------CCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHhccCCCCCEEEEeeccHHh
Q ss_pred ---ChhhHHHHHhCCCCEEEEcCCCCCCHHHHHHHHhc-CCcEEEeCCCCCCHHHHHHHHHHHHhcCCCCceeecccCCC
Q psy17999 71 ---DQVSFDFLLSANVPFIKIGSGDSNNIPLIKYAASK-QKPLIISTGMLPSIEHVDNIYTTVKQYHSNLSILHCVSAYP 146 (335)
Q Consensus 71 ---d~~svd~l~~l~v~~~KIaS~d~~n~~LL~~~a~~-gkPvilStG~~~tl~Ei~~Av~~i~~g~~~~~~~~c~~g~~ 146 (335)
-++=++.+.+.|++.+-|+---.....-+..+++. |..+|.=.-.. |.+|-.+.+.....|
T Consensus 101 ~~G~e~F~~~~~~aGvdGlIipDLP~ee~~~~~~~~~~~gl~~I~lv~p~-t~~~Ri~~i~~~a~g-------------- 165 (259)
T PF00290_consen 101 QYGIERFFKEAKEAGVDGLIIPDLPPEESEELREAAKKHGLDLIPLVAPT-TPEERIKKIAKQASG-------------- 165 (259)
T ss_dssp HH-HHHHHHHHHHHTEEEEEETTSBGGGHHHHHHHHHHTT-EEEEEEETT-S-HHHHHHHHHH-SS--------------
T ss_pred ccchHHHHHHHHHcCCCEEEEcCCChHHHHHHHHHHHHcCCeEEEEECCC-CCHHHHHHHHHhCCc--------------
Q ss_pred CCCCCcccccCceEEeeecCCCCCCccCCCchH-----HHHHHHHCCCCCe--ecCCCCCChHHHHHHHHcCCcE
Q psy17999 147 TPYPTVKQYHSNLSILHCVSAYPTPYHDINLNV-----IHTLRSRYPDIPI--GYSGHENGVHVCYAAVAMGAQI 214 (335)
Q Consensus 147 ~~~~~~~~~~~~l~llHC~s~YP~~~~~~nL~~-----i~~L~~~fp~~pV--G~SdHt~g~~~~~aAvalGA~v 214 (335)
++.|+|.+.+--....+.. +..+|+.. ++|| ||-=++......+.+.|=|+-|
T Consensus 166 --------------FiY~vs~~GvTG~~~~~~~~l~~~i~~ik~~~-~~Pv~vGFGI~~~e~~~~~~~~aDGvIV 225 (259)
T PF00290_consen 166 --------------FIYLVSRMGVTGSRTELPDELKEFIKRIKKHT-DLPVAVGFGISTPEQAKKLAAGADGVIV 225 (259)
T ss_dssp --------------EEEEESSSSSSSTTSSCHHHHHHHHHHHHHTT-SS-EEEESSS-SHHHHHHHHTTSSEEEE
T ss_pred --------------EEEeeccCCCCCCcccchHHHHHHHHHHHhhc-CcceEEecCCCCHHHHHHHHccCCEEEE
No 477
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=65.43 E-value=95 Score=29.25 Aligned_cols=135 Identities=14% Similarity=0.089 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHcCCc-------------eEeccCChhhHHHHHhCCCCEEEEcCCCCCCHH-HHHHHH-hcCCc-EEEeC
Q psy17999 50 EYVMLQQCADQVDIM-------------FTASAMDQVSFDFLLSANVPFIKIGSGDSNNIP-LIKYAA-SKQKP-LIIST 113 (335)
Q Consensus 50 ~~~~L~~~~~~~Gi~-------------f~stpfd~~svd~l~~l~v~~~KIaS~d~~n~~-LL~~~a-~~gkP-vilSt 113 (335)
..+-+++......++ +..|||- +.||.|.+.|++++-+-.+.=.-.. -++.+- +...| .++..
T Consensus 54 gv~dIkai~~~v~vPIIGIiKrd~~~s~v~ITptl-keVd~L~~~Ga~IIA~DaT~R~RP~~~~~~~i~~~k~~~~l~MA 132 (229)
T COG3010 54 GVEDIKAIRAVVDVPIIGIIKRDYPDSPVRITPTL-KEVDALAEAGADIIAFDATDRPRPDGDLEELIARIKYPGQLAMA 132 (229)
T ss_pred chhhHHHHHhhCCCCeEEEEecCCCCCCceecccH-HHHHHHHHCCCcEEEeecccCCCCcchHHHHHHHhhcCCcEEEe
Confidence 455555555555554 4556664 5678888888888888776544443 333322 23333 44555
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCceeecccCCCCCCCCcccccCceEEeeecCCCCCCccCCCchHHHHHHHHCCCCCee
Q psy17999 114 GMLPSIEHVDNIYTTVKQYHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYPTPYHDINLNVIHTLRSRYPDIPIG 193 (335)
Q Consensus 114 G~~~tl~Ei~~Av~~i~~g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~s~YP~~~~~~nL~~i~~L~~~fp~~pVG 193 (335)
--| |++|...|.+. |-. + ==+-|+.-+.|+..+.+.|+..+..|.+ . +++|.
T Consensus 133 D~S-t~ee~l~a~~~---G~D---~-------------------IGTTLsGYT~~~~~~~~pDf~lvk~l~~-~-~~~vI 184 (229)
T COG3010 133 DCS-TFEEGLNAHKL---GFD---I-------------------IGTTLSGYTGYTEKPTEPDFQLVKQLSD-A-GCRVI 184 (229)
T ss_pred ccC-CHHHHHHHHHc---CCc---E-------------------EecccccccCCCCCCCCCcHHHHHHHHh-C-CCeEE
Confidence 566 88887777542 321 0 0134666678888888999999999987 4 88885
Q ss_pred cCCCCCChHHHHHHHHcCCc
Q psy17999 194 YSGHENGVHVCYAAVAMGAQ 213 (335)
Q Consensus 194 ~SdHt~g~~~~~aAvalGA~ 213 (335)
=-+--..+..+.-|.-+||.
T Consensus 185 AEGr~~tP~~Ak~a~~~Ga~ 204 (229)
T COG3010 185 AEGRYNTPEQAKKAIEIGAD 204 (229)
T ss_pred eeCCCCCHHHHHHHHHhCCe
Confidence 33333347777889999998
No 478
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=65.30 E-value=34 Score=35.92 Aligned_cols=96 Identities=20% Similarity=0.227 Sum_probs=59.1
Q ss_pred HHHHHHhcCCc-EEEe---CCCCCCHHHHHHHHHHHHh-cCCCCceeecccCCCCCCCCcccccCceEEeeecCCCCCCc
Q psy17999 98 LIKYAASKQKP-LIIS---TGMLPSIEHVDNIYTTVKQ-YHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYPTPY 172 (335)
Q Consensus 98 LL~~~a~~gkP-vilS---tG~~~tl~Ei~~Av~~i~~-g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~s~YP~~~ 172 (335)
.++++-+.|.. |.++ .+.+ +++-+.+.++.+.. |.. .|-+|+.. .+=+|.
T Consensus 214 ~V~~Ak~~G~~~v~f~~EDa~Rt-d~efl~~~~~~a~~~Gad--~I~l~DTv----------------------G~~tP~ 268 (503)
T PLN03228 214 SIRYAKSLGFHDIQFGCEDGGRS-DKEFLCKILGEAIKAGAT--SVGIADTV----------------------GINMPH 268 (503)
T ss_pred HHHHHHHcCCceEEecccccccc-CHHHHHHHHHHHHhcCCC--EEEEecCC----------------------CCCCHH
Confidence 44445555664 4443 3345 66666666666655 544 45555542 233343
Q ss_pred cCCCchHHHHHHHHCC---CCCeecCCCCC-C--hHHHHHHHHcCCcEEEeccCCC
Q psy17999 173 HDINLNVIHTLRSRYP---DIPIGYSGHEN-G--VHVCYAAVAMGAQIIEKHFTLD 222 (335)
Q Consensus 173 ~~~nL~~i~~L~~~fp---~~pVG~SdHt~-g--~~~~~aAvalGA~vIEkH~tld 222 (335)
+-. ..+..|++.+| +++|++=.|.. | .+-+++|+..||+.|+- |+.
T Consensus 269 ~v~--~lV~~l~~~~~~~~~i~I~~H~HND~GlAvANslaAi~aGa~~Vd~--Tv~ 320 (503)
T PLN03228 269 EFG--ELVTYVKANTPGIDDIVFSVHCHNDLGLATANTIAGICAGARQVEV--TIN 320 (503)
T ss_pred HHH--HHHHHHHHHhccccCceeEecccCCcChHHHHHHHHHHhCCCEEEE--ecc
Confidence 322 34678888886 47799988864 4 55578999999999984 554
No 479
>PRK08354 putative aminotransferase; Provisional
Probab=65.26 E-value=42 Score=31.93 Aligned_cols=90 Identities=9% Similarity=0.027 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHcCCceEeccCChhhHHHHHhCCCCEEEEcCCCCCCHHHHHHHHhcCCcEEEe-----CCCCCCHHHHHH
Q psy17999 50 EYVMLQQCADQVDIMFTASAMDQVSFDFLLSANVPFIKIGSGDSNNIPLIKYAASKQKPLIIS-----TGMLPSIEHVDN 124 (335)
Q Consensus 50 ~~~~L~~~~~~~Gi~f~stpfd~~svd~l~~l~v~~~KIaS~d~~n~~LL~~~a~~gkPvilS-----tG~~~tl~Ei~~ 124 (335)
-+..+......-+-..+-+|....-...+..+|+....++ .+...|++..+..+-+++. ||...+.+++++
T Consensus 66 al~~~~~~~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~~~----~d~~~l~~~~~~~~~vi~~~P~NPTG~~~~~~~l~~ 141 (311)
T PRK08354 66 ALYLIGILALRDRKVIIPRHTYGEYERVARFFAARIIKGP----NDPEKLEELVERNSVVFFCNPNNPDGKFYNFKELKP 141 (311)
T ss_pred HHHHHHHhhCCCCeEEEeCCCcHHHHHHHHHcCCEEeecC----CCHHHHHHhhcCCCEEEEecCCCCCCCccCHHHHHH
Confidence 3344444333333445556776666777777787776653 2456666554444556664 887778999999
Q ss_pred HHHHHHhcCCCCceeecccCCC
Q psy17999 125 IYTTVKQYHSNLSILHCVSAYP 146 (335)
Q Consensus 125 Av~~i~~g~~~~~~~~c~~g~~ 146 (335)
.++..+..+ -+++++..+.
T Consensus 142 l~~~a~~~~---~~li~De~y~ 160 (311)
T PRK08354 142 LLDAVEDRN---ALLILDEAFI 160 (311)
T ss_pred HHHHhhhcC---cEEEEeCcch
Confidence 988776532 3677777764
No 480
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=65.13 E-value=62 Score=32.35 Aligned_cols=127 Identities=20% Similarity=0.263 Sum_probs=67.0
Q ss_pred CHHHHHHHHh-cCCcEEEeCCCCCCHHHHHHHHHHHHhcCCCCceeecccCCCCCCCCcccccCceEEeeecCCCCCCcc
Q psy17999 95 NIPLIKYAAS-KQKPLIISTGMLPSIEHVDNIYTTVKQYHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYPTPYH 173 (335)
Q Consensus 95 n~~LL~~~a~-~gkPvilStG~~~tl~Ei~~Av~~i~~g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~s~YP~~~~ 173 (335)
+|..|+.+.+ +++||+++ |.. +.++...+++. |-. -|++...| ..+-|-.|
T Consensus 209 ~~~~l~~lr~~~~~PvivK-gv~-~~~dA~~a~~~---G~d--~I~vsnhG-------------------Gr~ld~~~-- 260 (351)
T cd04737 209 SPADIEFIAKISGLPVIVK-GIQ-SPEDADVAINA---GAD--GIWVSNHG-------------------GRQLDGGP-- 260 (351)
T ss_pred CHHHHHHHHHHhCCcEEEe-cCC-CHHHHHHHHHc---CCC--EEEEeCCC-------------------CccCCCCc--
Confidence 6777777775 68999999 655 77777766553 432 11111111 11112222
Q ss_pred CCCchHHHHHHHHCC-CCCeec-CCCCCChHHHHHHHHcCCc--EEEeccCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q psy17999 174 DINLNVIHTLRSRYP-DIPIGY-SGHENGVHVCYAAVAMGAQ--IIEKHFTLDKSWKGSDHASSLTPPELKALVTGIRDI 249 (335)
Q Consensus 174 ~~nL~~i~~L~~~fp-~~pVG~-SdHt~g~~~~~aAvalGA~--vIEkH~tld~~~~G~Dh~~Sl~p~el~~lv~~ir~~ 249 (335)
..+..++.+++... ++||.. .+=..|..+. -|+++||+ .|-+-+-..-...|.+ =-..-+..+.++++..
T Consensus 261 -~~~~~l~~i~~a~~~~i~vi~dGGIr~g~Di~-kaLalGA~~V~iGr~~l~~la~~G~~----gv~~~l~~l~~El~~~ 334 (351)
T cd04737 261 -ASFDSLPEIAEAVNHRVPIIFDSGVRRGEHVF-KALASGADAVAVGRPVLYGLALGGAQ----GVASVLEHLNKELKIV 334 (351)
T ss_pred -hHHHHHHHHHHHhCCCCeEEEECCCCCHHHHH-HHHHcCCCEEEECHHHHHHHhhchHH----HHHHHHHHHHHHHHHH
Confidence 23566777777663 488844 4444444444 47789998 4444322111111111 0123455556666666
Q ss_pred HHHhCC
Q psy17999 250 EQSLGS 255 (335)
Q Consensus 250 ~~alG~ 255 (335)
-..+|.
T Consensus 335 m~l~G~ 340 (351)
T cd04737 335 MQLAGT 340 (351)
T ss_pred HHHHCC
Confidence 667774
No 481
>PF07287 DUF1446: Protein of unknown function (DUF1446); InterPro: IPR010839 This family consists of several bacterial and plant proteins of around 400 residues in length. The function of this family is unknown.
Probab=65.11 E-value=62 Score=32.61 Aligned_cols=34 Identities=26% Similarity=0.349 Sum_probs=28.7
Q ss_pred HHHHHHHhcCCcEEEeCCCCCCHHHHHHHHHHHHh
Q psy17999 97 PLIKYAASKQKPLIISTGMLPSIEHVDNIYTTVKQ 131 (335)
Q Consensus 97 ~LL~~~a~~gkPvilStG~~~tl~Ei~~Av~~i~~ 131 (335)
++|..+++.|.|||+.+|.. +.....++++-+.+
T Consensus 62 ~~L~~~~~~gIkvI~NaGg~-np~~~a~~v~eia~ 95 (362)
T PF07287_consen 62 PLLPAAAEKGIKVITNAGGL-NPAGCADIVREIAR 95 (362)
T ss_pred HHHHHHHhCCCCEEEeCCCC-CHHHHHHHHHHHHH
Confidence 67899999999999999999 88887777766554
No 482
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=65.03 E-value=28 Score=31.68 Aligned_cols=63 Identities=14% Similarity=0.123 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHcCCceEeccC----Chh----hHHHHHhCCCCEEEEcCCCCCC-HHHHHHHHhcCCcEEEe
Q psy17999 50 EYVMLQQCADQVDIMFTASAM----DQV----SFDFLLSANVPFIKIGSGDSNN-IPLIKYAASKQKPLIIS 112 (335)
Q Consensus 50 ~~~~L~~~~~~~Gi~f~stpf----d~~----svd~l~~l~v~~~KIaS~d~~n-~~LL~~~a~~gkPvilS 112 (335)
-+..+.+.|++.|+.++...+ +.. .++.+.+.+++.+-|.+.+-.+ .+.++.+.+.+.|||+-
T Consensus 17 ~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~ 88 (275)
T cd06320 17 LKEGYENEAKKLGVSVDIQAAPSEGDQQGQLSIAENMINKGYKGLLFSPISDVNLVPAVERAKKKGIPVVNV 88 (275)
T ss_pred HHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHHHHHHHHhCCCEEEECCCChHHhHHHHHHHHHCCCeEEEE
Confidence 345677889999988776543 221 2445556689998887655433 57788888889998865
No 483
>TIGR02417 fruct_sucro_rep D-fructose-responsive transcription factor. Members of this family belong the lacI helix-turn-helix family (pfam00356) of DNA-binding transcriptional regulators. All members are from the proteobacteria. Characterized members act as positive and negative transcriptional regulators of fructose and sucrose transport and metabolism. Sucrose is a disaccharide composed of fructose and glucose; D-fructose-1-phosphate rather than an intact sucrose moiety has been shown to act as the inducer.
Probab=64.99 E-value=37 Score=32.00 Aligned_cols=64 Identities=11% Similarity=0.059 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHcCCceEeccC--Chh----hHHHHHhCCCCEEEEcCCCCCCHHHHHHHHhcCCcEEEe
Q psy17999 49 EEYVMLQQCADQVDIMFTASAM--DQV----SFDFLLSANVPFIKIGSGDSNNIPLIKYAASKQKPLIIS 112 (335)
Q Consensus 49 e~~~~L~~~~~~~Gi~f~stpf--d~~----svd~l~~l~v~~~KIaS~d~~n~~LL~~~a~~gkPvilS 112 (335)
+-...+.+.+++.|..++.... +.+ .++.+.+.++|.+-+.+.+..+.+.++.+.+.+.|+++-
T Consensus 77 ~~~~~i~~~~~~~gy~~~i~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~l~~~~iPvV~~ 146 (327)
T TIGR02417 77 RIAKELEQQCREAGYQLLIACSDDNPDQEKVVIENLLARQVDALIVASCMPPEDAYYQKLQNEGLPVVAL 146 (327)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCChHHHHHHHhcCCCEEEE
Confidence 3456788889999998766443 332 245566778999888776554678889988889998754
No 484
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=64.93 E-value=1.3e+02 Score=28.60 Aligned_cols=133 Identities=18% Similarity=0.111 Sum_probs=0.0
Q ss_pred HhhcCCHHHHHHHHHHHHH---------cCCceEeccCChhhHHHHHhCCCCEEEEcCCCC---CCHHHHHHHHh----c
Q psy17999 42 QHLEFSQEEYVMLQQCADQ---------VDIMFTASAMDQVSFDFLLSANVPFIKIGSGDS---NNIPLIKYAAS----K 105 (335)
Q Consensus 42 ~~~el~~e~~~~L~~~~~~---------~Gi~f~stpfd~~svd~l~~l~v~~~KIaS~d~---~n~~LL~~~a~----~ 105 (335)
+...|+.++..++.+...+ .|+.-.++.-..+.+..+.++|+|.+-+..... +.-.++++..+ +
T Consensus 47 E~~~ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~G~d~v~~~pP~~~~~~~~~i~~~~~~ia~~~ 126 (292)
T PRK03170 47 ESPTLTHEEHEELIRAVVEAVNGRVPVIAGTGSNSTAEAIELTKFAEKAGADGALVVTPYYNKPTQEGLYQHFKAIAEAT 126 (292)
T ss_pred ccccCCHHHHHHHHHHHHHHhCCCCcEEeecCCchHHHHHHHHHHHHHcCCCEEEECCCcCCCCCHHHHHHHHHHHHhcC
Q ss_pred CCcEEEe-----CCCCCCHHHHHHHHHHHHhcCCCCceeecccCCCCCCCCcccccCceEEeeecCCCCCCccCCCchHH
Q psy17999 106 QKPLIIS-----TGMLPSIEHVDNIYTTVKQYHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYPTPYHDINLNVI 180 (335)
Q Consensus 106 gkPvilS-----tG~~~tl~Ei~~Av~~i~~g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~s~YP~~~~~~nL~~i 180 (335)
+.||++= ||-.++.+.+.+..+ ++ +++-+-..| .|+..+
T Consensus 127 ~~pv~lYn~P~~~g~~l~~~~~~~L~~-----~p-----------------------~v~giK~s~--------~d~~~~ 170 (292)
T PRK03170 127 DLPIILYNVPGRTGVDILPETVARLAE-----HP-----------------------NIVGIKEAT--------GDLERV 170 (292)
T ss_pred CCCEEEEECccccCCCCCHHHHHHHHc-----CC-----------------------CEEEEEECC--------CCHHHH
Q ss_pred HHHHHHCCCCCeecCCCCCChHHHHHHHHcCCc
Q psy17999 181 HTLRSRYPDIPIGYSGHENGVHVCYAAVAMGAQ 213 (335)
Q Consensus 181 ~~L~~~fp~~pVG~SdHt~g~~~~~aAvalGA~ 213 (335)
..+.+++++--.-|+++..-.. .++.+|++
T Consensus 171 ~~~~~~~~~~~~v~~G~d~~~~---~~l~~G~~ 200 (292)
T PRK03170 171 SELIELVPDDFAVYSGDDALAL---PFLALGGV 200 (292)
T ss_pred HHHHHhCCCCeEEEECChHhHH---HHHHcCCC
No 485
>cd06294 PBP1_ycjW_transcription_regulator_like Ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors. This group includes the ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=64.91 E-value=94 Score=27.84 Aligned_cols=64 Identities=11% Similarity=0.125 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHcCCceEeccCC--hhhHHH----HHhCCCCEEEEcCCCCCCHHHHHHHHhcCCcEEEe
Q psy17999 48 QEEYVMLQQCADQVDIMFTASAMD--QVSFDF----LLSANVPFIKIGSGDSNNIPLIKYAASKQKPLIIS 112 (335)
Q Consensus 48 ~e~~~~L~~~~~~~Gi~f~stpfd--~~svd~----l~~l~v~~~KIaS~d~~n~~LL~~~a~~gkPvilS 112 (335)
...+..+.+.+++.|..++....+ .+..+. +.+-++|.+-|.+.+. +.+.++.+.+.|.||++-
T Consensus 20 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~dgiii~~~~~-~~~~~~~~~~~~ipvV~~ 89 (270)
T cd06294 20 IEVLRGISAVANENGYDISLATGKNEEELLEEVKKMIQQKRVDGFILLYSRE-DDPIIDYLKEEKFPFVVI 89 (270)
T ss_pred HHHHHHHHHHHHHCCCEEEEecCCCcHHHHHHHHHHHHHcCcCEEEEecCcC-CcHHHHHHHhcCCCEEEE
Confidence 456778889999999887654332 122222 3344599888876543 457788888889998765
No 486
>PLN02826 dihydroorotate dehydrogenase
Probab=64.67 E-value=64 Score=32.95 Aligned_cols=131 Identities=15% Similarity=0.229 Sum_probs=69.3
Q ss_pred CCcEEEeCCCCCCHHHHHHHHHHHHh-cCCCCceeecccCCCCCCCCcccccCceE-EeeecCCCCCCccCCCchHHHHH
Q psy17999 106 QKPLIISTGMLPSIEHVDNIYTTVKQ-YHSNLSILHCVSAYPTPYPTVKQYHSNLS-ILHCVSAYPTPYHDINLNVIHTL 183 (335)
Q Consensus 106 gkPvilStG~~~tl~Ei~~Av~~i~~-g~~~~~~~~c~~g~~~~~~~~~~~~~~l~-llHC~s~YP~~~~~~nL~~i~~L 183 (335)
.+||+++-+.-.+.+++...++.+.. |-. -|++.-+=+...- ++... ... ---..|.-| ....-++.+..+
T Consensus 262 ~~Pv~vKlaPdl~~~di~~ia~~a~~~G~d--GIi~~NTt~~r~~-dl~~~--~~~~~~GGlSG~p--l~~~sl~~v~~l 334 (409)
T PLN02826 262 PPPLLVKIAPDLSKEDLEDIAAVALALGID--GLIISNTTISRPD-SVLGH--PHADEAGGLSGKP--LFDLSTEVLREM 334 (409)
T ss_pred CCceEEecCCCCCHHHHHHHHHHHHHcCCC--EEEEEcccCcCcc-chhcc--cccccCCCcCCcc--ccHHHHHHHHHH
Confidence 68999999866577788888887766 543 1222211110000 00000 000 000112212 122347778888
Q ss_pred HHHCC-CCCe-ecCCCCCChHHHHHHHHcCCcEEEeccCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhC
Q psy17999 184 RSRYP-DIPI-GYSGHENGVHVCYAAVAMGAQIIEKHFTLDKSWKGSDHASSLTPPELKALVTGIRDIEQSLG 254 (335)
Q Consensus 184 ~~~fp-~~pV-G~SdHt~g~~~~~aAvalGA~vIEkH~tld~~~~G~Dh~~Sl~p~el~~lv~~ir~~~~alG 254 (335)
++..+ ++|| |-.+=.. ..-++..+.+||+.+.-.-.+= +. .|.-++++.+++.+.-...|
T Consensus 335 ~~~~~~~ipIIgvGGI~s-g~Da~e~i~AGAs~VQv~Ta~~--~~--------Gp~~i~~I~~eL~~~l~~~G 396 (409)
T PLN02826 335 YRLTRGKIPLVGCGGVSS-GEDAYKKIRAGASLVQLYTAFA--YE--------GPALIPRIKAELAACLERDG 396 (409)
T ss_pred HHHhCCCCcEEEECCCCC-HHHHHHHHHhCCCeeeecHHHH--hc--------CHHHHHHHHHHHHHHHHHcC
Confidence 77764 5787 5333233 4445568899999888532111 12 35677888888776544444
No 487
>cd01541 PBP1_AraR Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of AraR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which i
Probab=64.53 E-value=38 Score=30.74 Aligned_cols=64 Identities=14% Similarity=0.098 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHcCCceEecc--CChh----hHHHHHhCCCCEEEEcCCCC----CCHHHHHHHHhcCCcEEEe
Q psy17999 49 EEYVMLQQCADQVDIMFTASA--MDQV----SFDFLLSANVPFIKIGSGDS----NNIPLIKYAASKQKPLIIS 112 (335)
Q Consensus 49 e~~~~L~~~~~~~Gi~f~stp--fd~~----svd~l~~l~v~~~KIaS~d~----~n~~LL~~~a~~gkPvilS 112 (335)
.-+..+.+.|+++|+.++... ++.+ .++.+.+.++|.+-+.+.+- .+.+.++.+.+.+.||++-
T Consensus 16 ~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgii~~~~~~~~~~~~~~~~~~~~~~~ipvV~~ 89 (273)
T cd01541 16 SIIRGIESVLSEKGYSLLLASTNNDPERERKCLENMLSQGIDGLIIEPTKSALPNPNIDLYLKLEKLGIPYVFI 89 (273)
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEeccccccccccHHHHHHHHHCCCCEEEE
Confidence 345566788999999988754 3442 24556677899998876542 2557888888889998864
No 488
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=64.46 E-value=31 Score=33.01 Aligned_cols=64 Identities=22% Similarity=0.191 Sum_probs=53.0
Q ss_pred cCCHHHHHHHHHHHHHcCCceEeccCChhhHHHHHhCCCCEEEEcCCCCCCHHHHHHHHhcCCcEE
Q psy17999 45 EFSQEEYVMLQQCADQVDIMFTASAMDQVSFDFLLSANVPFIKIGSGDSNNIPLIKYAASKQKPLI 110 (335)
Q Consensus 45 el~~e~~~~L~~~~~~~Gi~f~stpfd~~svd~l~~l~v~~~KIaS~d~~n~~LL~~~a~~gkPvi 110 (335)
.++.+++..+.+.+++.|+.+.+-......++.+.+.|++.+- =+...+...++.+++.|..++
T Consensus 156 ~~~~e~l~~~~~~A~~~g~~v~~H~~~~~~i~~~l~~G~~~i~--H~~~~~~~~~~~l~~~g~~~~ 219 (342)
T cd01299 156 QFSEEELRAIVDEAHKAGLYVAAHAYGAEAIRRAIRAGVDTIE--HGFLIDDETIELMKEKGIFLV 219 (342)
T ss_pred CcCHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEe--ecCCCCHHHHHHHHHCCcEEe
Confidence 4788999999999999999999999888889999999888652 233446788999999887764
No 489
>PF01964 ThiC: ThiC family; InterPro: IPR002817 ThiC is found within the thiamin biosynthesis operon. ThiC is involved in thiamin biosynthesis []. The precise catalytic function of ThiC is still not known. ThiC participates in the formation of 4-Amino-5-hydroxymethyl-2-methylpyrimidine from AIR, an intermediate in the de novo pyrimidine biosynthesis.; GO: 0009228 thiamine biosynthetic process; PDB: 3EPO_A 3EPN_B 3EPM_B.
Probab=64.42 E-value=12 Score=38.20 Aligned_cols=136 Identities=18% Similarity=0.176 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHcCCceEe----------ccCChhhHHHHHhCCCCEEEEcCCCCCCHHHHHHHHhcCCcEEEeCCCCC
Q psy17999 48 QEEYVMLQQCADQVDIMFTA----------SAMDQVSFDFLLSANVPFIKIGSGDSNNIPLIKYAASKQKPLIISTGMLP 117 (335)
Q Consensus 48 ~e~~~~L~~~~~~~Gi~f~s----------tpfd~~svd~l~~l~v~~~KIaS~d~~n~~LL~~~a~~gkPvilStG~~~ 117 (335)
.+.|.+|.+.|+++++.+.. ...|..++..|..+ -.|.+++-+.|.=|++.-.++.
T Consensus 201 y~~fD~lLeI~k~yDVtLSLGDglRPG~i~Da~D~aQi~EL~~l--------------geL~~rA~e~gVQvMVEGPGHV 266 (420)
T PF01964_consen 201 YEHFDRLLEIAKEYDVTLSLGDGLRPGCIADATDRAQIQELIIL--------------GELVKRAREAGVQVMVEGPGHV 266 (420)
T ss_dssp HHTHHHHHHHHTTTT-EEEE--TT--SSGGGTT-HHHHHHHHHH--------------HHHHHHHHHTT--EEEEE-SB-
T ss_pred HHhHHHHHHHHHHhCeeEecccccCCCCcCCCCcHHHHHHHHHH--------------HHHHHHHHHCCCeEEeeCCCCC
Confidence 47899999999999988753 44555555555543 5788888889999999987777
Q ss_pred CHHHHHHHHHHHHh--cCCCCceeecccCCCCCCCCcccccCceEEeeecCCCCCCccCCCchHHHHHHHHCCCCCeecC
Q psy17999 118 SIEHVDNIYTTVKQ--YHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYPTPYHDINLNVIHTLRSRYPDIPIGYS 195 (335)
Q Consensus 118 tl~Ei~~Av~~i~~--g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~s~YP~~~~~~nL~~i~~L~~~fp~~pVG~S 195 (335)
.+++|..-++..++ ++. ++.+|=. +. + ++-.||
T Consensus 267 Pl~~I~~nv~lqK~lc~~A-----------------------PfYvLGP---------------Lv-----T-DiapGY- 301 (420)
T PF01964_consen 267 PLNQIEANVKLQKRLCHGA-----------------------PFYVLGP---------------LV-----T-DIAPGY- 301 (420)
T ss_dssp -GGGHHHHHHHHHHHTTT-------------------------EEEE-----------------BS-------SS-TT--
T ss_pred CHHHHHHHHHHHHHhcCCC-----------------------CcccCCc---------------cc-----c-ccCCCh-
Confidence 99999999887776 222 3322211 11 2 444455
Q ss_pred CCCCChHHHHHHHHcCCcEEEeccCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q psy17999 196 GHENGVHVCYAAVAMGAQIIEKHFTLDKSWKGSDHASSLTPPELKALVTGIRDI 249 (335)
Q Consensus 196 dHt~g~~~~~aAvalGA~vIEkH~tld~~~~G~Dh~~Sl~p~el~~lv~~ir~~ 249 (335)
||..+.--...|.+.||++|= -+|+--.+.-| ++++.++=|-.-|-.
T Consensus 302 DHIt~AIGgAiaa~~GAdfLC-YVTPaEHL~LP------~~eDV~eGviA~kIA 348 (420)
T PF01964_consen 302 DHITSAIGGAIAAAAGADFLC-YVTPAEHLGLP------TPEDVREGVIASKIA 348 (420)
T ss_dssp HHHHHHHHHHHHHHHT-SEEE----TTTTTS---------HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCcceEe-eccHHHHhCCC------CHHHHHHHHHHHHHH
Confidence 777664444456788999763 46776444433 366776665555543
No 490
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=64.36 E-value=99 Score=29.93 Aligned_cols=115 Identities=17% Similarity=0.254 Sum_probs=0.0
Q ss_pred HHHHhCCCCEEEEcCCCCCCHHHHHHHHhc----CCcEEEeCCCCCCHHHHHHHHHHHHhcCCCCceeecccCCCCCCCC
Q psy17999 76 DFLLSANVPFIKIGSGDSNNIPLIKYAASK----QKPLIISTGMLPSIEHVDNIYTTVKQYHSNLSILHCVSAYPTPYPT 151 (335)
Q Consensus 76 d~l~~l~v~~~KIaS~d~~n~~LL~~~a~~----gkPvilStG~~~tl~Ei~~Av~~i~~g~~~~~~~~c~~g~~~~~~~ 151 (335)
++|....-.-|=|++.++.|++.++.+-+. +.||||.+..+ ...-.. ++.+.
T Consensus 3 ~lL~~A~~~~yaV~AfN~~n~e~~~avi~AAe~~~sPvIi~~~~~-~~~~~~--~~~~~--------------------- 58 (276)
T cd00947 3 ELLKKAREGGYAVGAFNINNLETLKAILEAAEETRSPVILQISEG-AIKYAG--LELLV--------------------- 58 (276)
T ss_pred HHHHHHHHCCceEEEEeeCCHHHHHHHHHHHHHhCCCEEEEcCcc-hhhhCC--HHHHH---------------------
Q ss_pred cccccCceEEeeecCCCCCCccCCCchHHHHHHHHCCCCCeecC-CCCCChHHHHHHHHcCCc-EEEeccCCCCCCCCCC
Q psy17999 152 VKQYHSNLSILHCVSAYPTPYHDINLNVIHTLRSRYPDIPIGYS-GHENGVHVCYAAVAMGAQ-IIEKHFTLDKSWKGSD 229 (335)
Q Consensus 152 ~~~~~~~l~llHC~s~YP~~~~~~nL~~i~~L~~~fp~~pVG~S-dHt~g~~~~~aAvalGA~-vIEkH~tld~~~~G~D 229 (335)
..+..+.+.+ .+||..= ||......+.-|+.+|.+ |.= |
T Consensus 59 --------------------------~~~~~~a~~~-~VPV~lHLDH~~~~~~i~~ai~~GftSVMi------------D 99 (276)
T cd00947 59 --------------------------AMVKAAAERA-SVPVALHLDHGSSFELIKRAIRAGFSSVMI------------D 99 (276)
T ss_pred --------------------------HHHHHHHHHC-CCCEEEECCCCCCHHHHHHHHHhCCCEEEe------------C
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHhC
Q psy17999 230 HASSLTPPELKALVTGIRDIEQSLG 254 (335)
Q Consensus 230 h~~Sl~p~el~~lv~~ir~~~~alG 254 (335)
. ++++.+|=-++.+.+-+.-...|
T Consensus 100 ~-S~l~~eeNi~~t~~vv~~ah~~g 123 (276)
T cd00947 100 G-SHLPFEENVAKTKEVVELAHAYG 123 (276)
T ss_pred C-CCCCHHHHHHHHHHHHHHHHHcC
No 491
>PRK08187 pyruvate kinase; Validated
Probab=64.25 E-value=43 Score=35.07 Aligned_cols=82 Identities=16% Similarity=0.112 Sum_probs=57.7
Q ss_pred CHHHHHHHHHHHHHcC------CceEeccCChhhHHHHHhCC-------CCEEEEcCCCCC-----------CHHHHHHH
Q psy17999 47 SQEEYVMLQQCADQVD------IMFTASAMDQVSFDFLLSAN-------VPFIKIGSGDSN-----------NIPLIKYA 102 (335)
Q Consensus 47 ~~e~~~~L~~~~~~~G------i~f~stpfd~~svd~l~~l~-------v~~~KIaS~d~~-----------n~~LL~~~ 102 (335)
+.++...+.++..+.| +.+++-.-+.++++-+.++= +..+-||.+|+. .-.++..+
T Consensus 335 saeDV~~l~~~L~~~~~~~~~~~~IIaKIET~~gv~Nl~eI~~~ad~~~v~GImiARGDLgvEig~e~~p~~Qk~II~~c 414 (493)
T PRK08187 335 SPGDVEALQAALAARRPDDWRKLGLVLKIETPRAVANLPELIVQAAGRQPFGVMIARGDLAVEIGFERLAEMQEEILWLC 414 (493)
T ss_pred CHHHHHHHHHHHHHhCCCCCCCCeEEEEECCHHHHHHHHHHHHHhCcCCCcEEEEEchHhhhhcCcccChHHHHHHHHHH
Confidence 5677888888777654 66777777777766555431 348888888764 23455667
Q ss_pred HhcCCcEEEeCCC--------CCCHHHHHHHHHH
Q psy17999 103 ASKQKPLIISTGM--------LPSIEHVDNIYTT 128 (335)
Q Consensus 103 a~~gkPvilStG~--------~~tl~Ei~~Av~~ 128 (335)
...|+|+|+.|=| .||-.|+-.++..
T Consensus 415 raagkpvI~ATQmLESM~~~p~PTRAEvtDvAna 448 (493)
T PRK08187 415 EAAHVPVIWATQVLEGLVKKGLPSRAEMTDAAMA 448 (493)
T ss_pred HHhCCCeEEEchhhHhhccCCCCchHHHHHHHhh
Confidence 7789999987743 3589999998764
No 492
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=64.25 E-value=1.4e+02 Score=28.75 Aligned_cols=40 Identities=28% Similarity=0.367 Sum_probs=29.5
Q ss_pred hHHHHHHHHC--CCCCeecCCCCC-C--hHHHHHHHHcCCcEEEe
Q psy17999 178 NVIHTLRSRY--PDIPIGYSGHEN-G--VHVCYAAVAMGAQIIEK 217 (335)
Q Consensus 178 ~~i~~L~~~f--p~~pVG~SdHt~-g--~~~~~aAvalGA~vIEk 217 (335)
..+..+++.+ |+.++|+=.|.. | ..-+++|+..||++|+-
T Consensus 190 ~l~~~l~~~~~~p~~~l~~H~Hn~~Gla~AN~laA~~aG~~~vd~ 234 (279)
T cd07947 190 KIIYGLRKDCGVPSENLEWHGHNDFYKAVANAVAAWLYGASWVNC 234 (279)
T ss_pred HHHHHHHHhcCCCCceEEEEecCCCChHHHHHHHHHHhCCCEEEE
Confidence 4466777774 455689877753 4 55678999999999984
No 493
>cd06297 PBP1_LacI_like_12 Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs. Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=64.23 E-value=32 Score=31.39 Aligned_cols=63 Identities=8% Similarity=0.012 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHcCCceEeccCChh-----hHH-HHHhCCCCEEEEcCCCCCCHHHHHHHHhcCCcEEEe
Q psy17999 49 EEYVMLQQCADQVDIMFTASAMDQV-----SFD-FLLSANVPFIKIGSGDSNNIPLIKYAASKQKPLIIS 112 (335)
Q Consensus 49 e~~~~L~~~~~~~Gi~f~stpfd~~-----svd-~l~~l~v~~~KIaS~d~~n~~LL~~~a~~gkPvilS 112 (335)
+.+..+.+.+++.|..++...++.. .+. .+.+.++|.+-+.+.+.+ .+.++.+.+.+.|+++-
T Consensus 16 ~~~~~i~~~~~~~gy~~~~~~~~~~~~~~~~~~~~l~~~~vdgvi~~~~~~~-~~~~~~l~~~~iPvv~~ 84 (269)
T cd06297 16 RLLEGIEGALLEQRYDLALFPLLSLARLKRYLESTTLAYLTDGLLLASYDLT-ERLAERRLPTERPVVLV 84 (269)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCcHHHHHHHHHHHHhcCCCEEEEecCccC-hHHHHHHhhcCCCEEEE
Confidence 5567888999999988777655422 122 345567999999887654 67888888889998755
No 494
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=63.81 E-value=49 Score=31.94 Aligned_cols=104 Identities=12% Similarity=0.138 Sum_probs=0.0
Q ss_pred CceEeccCChhh----------HHHHHhCCCCEEEEcCCC-----------CCCHHHHHHHHhcCCcEEEeCCCCCCHHH
Q psy17999 63 IMFTASAMDQVS----------FDFLLSANVPFIKIGSGD-----------SNNIPLIKYAASKQKPLIISTGMLPSIEH 121 (335)
Q Consensus 63 i~f~stpfd~~s----------vd~l~~l~v~~~KIaS~d-----------~~n~~LL~~~a~~gkPvilStG~~~tl~E 121 (335)
+..+.|||+.+. ++++.+.||+.+-+..+. ..-.....+.+.-+.|||..+| + +.+|
T Consensus 12 ~~a~vTPf~~dg~iD~~~l~~li~~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~-~-~t~~ 89 (303)
T PRK03620 12 LSFPVTPFDADGSFDEAAYREHLEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETTAGRVPVIAGAG-G-GTAQ 89 (303)
T ss_pred EEeeeCCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecC-C-CHHH
Q ss_pred HHHHHHHHHh-cCCCCceeecccCCCCCCCCcccccCceEEeeecCCCCCCccCCCchHHHHHHHHCCCCCe-ec
Q psy17999 122 VDNIYTTVKQ-YHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYPTPYHDINLNVIHTLRSRYPDIPI-GY 194 (335)
Q Consensus 122 i~~Av~~i~~-g~~~~~~~~c~~g~~~~~~~~~~~~~~l~llHC~s~YP~~~~~~nL~~i~~L~~~fp~~pV-G~ 194 (335)
..+.++..++ |-. +++--.--|..+.++-=......+.+.. ++|| .|
T Consensus 90 ~i~~~~~a~~~Gad-------------------------av~~~pP~y~~~~~~~i~~~f~~va~~~-~lpi~lY 138 (303)
T PRK03620 90 AIEYAQAAERAGAD-------------------------GILLLPPYLTEAPQEGLAAHVEAVCKST-DLGVIVY 138 (303)
T ss_pred HHHHHHHHHHhCCC-------------------------EEEECCCCCCCCCHHHHHHHHHHHHHhC-CCCEEEE
No 495
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=63.52 E-value=43 Score=32.71 Aligned_cols=82 Identities=16% Similarity=0.174 Sum_probs=59.6
Q ss_pred HHHHHHHHHcCCceEeccCChhhHHHHHhCCCCEEEEcCC----------C---CCCHHHHHHHHh----cCCcEEEe--
Q psy17999 52 VMLQQCADQVDIMFTASAMDQVSFDFLLSANVPFIKIGSG----------D---SNNIPLIKYAAS----KQKPLIIS-- 112 (335)
Q Consensus 52 ~~L~~~~~~~Gi~f~stpfd~~svd~l~~l~v~~~KIaS~----------d---~~n~~LL~~~a~----~gkPvilS-- 112 (335)
..|++.-++.++.++..+||.-|+..+++.|.+++.+.|. | ++--+++..+.+ +.+||++.
T Consensus 6 ~~~r~l~~~~~~l~~p~v~Da~SArl~e~aGf~ai~~sg~~~~as~lG~pD~g~l~~~e~~~~~~~I~~~~~lPv~aD~d 85 (294)
T TIGR02319 6 RTFRELMNAPEILVVPSAYDALSAKVIQQAGFPAVHMTGSGTSASMLGLPDLGFTSVSEQAINAKNIVLAVDVPVIMDAD 85 (294)
T ss_pred HHHHHHhcCCCcEEeecCcCHHHHHHHHHcCCCEEEecHHHHHHHHcCCCCcCCCCHHHHHHHHHHHHhccCCCEEEECC
Confidence 3456666777889999999999999999999999998432 3 333344444432 58999986
Q ss_pred CCCCCCHHHHHHHHHHHHh-cCC
Q psy17999 113 TGMLPSIEHVDNIYTTVKQ-YHS 134 (335)
Q Consensus 113 tG~~~tl~Ei~~Av~~i~~-g~~ 134 (335)
||-+ ...++.+.|+.+.+ |-.
T Consensus 86 tGyG-~~~~v~r~V~~~~~aGaa 107 (294)
T TIGR02319 86 AGYG-NAMSVWRATREFERVGIV 107 (294)
T ss_pred CCCC-CcHHHHHHHHHHHHcCCe
Confidence 8977 55558777877776 644
No 496
>cd00946 FBP_aldolase_IIA Class II Type A, Fructose-1,6-bisphosphate (FBP) aldolases. The enzyme catalyses the zinc-dependent, reversible aldol condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to form fructose-1,6-bisphosphate. FBP aldolase is homodimeric and used in gluconeogenesis and glycolysis. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=63.52 E-value=58 Score=32.64 Aligned_cols=31 Identities=19% Similarity=0.196 Sum_probs=22.9
Q ss_pred EEEcCCCCCCHHHHHH----HHhcCCcEEEeCCCC
Q psy17999 86 IKIGSGDSNNIPLIKY----AASKQKPLIISTGML 116 (335)
Q Consensus 86 ~KIaS~d~~n~~LL~~----~a~~gkPvilStG~~ 116 (335)
|=|++.++.|+..++. +.+.+-||||....+
T Consensus 16 yAV~AfN~~n~e~~~avi~AAee~~sPvIiq~s~~ 50 (345)
T cd00946 16 FAIPAVNCTSSSTINAVLEAARDAKSPIIIQFSNG 50 (345)
T ss_pred ceEEEEeeCCHHHHHHHHHHHHHhCCCEEEECCcc
Confidence 5567777788877665 445799999998755
No 497
>PRK15446 phosphonate metabolism protein PhnM; Provisional
Probab=63.39 E-value=74 Score=31.76 Aligned_cols=64 Identities=6% Similarity=0.020 Sum_probs=54.7
Q ss_pred hcCCHHHHHHHHHHHHHcCCceEecc-CChhhHHHHHhCCCCEEEEcCCCCCCHHHHHHHHhcCCcEEE
Q psy17999 44 LEFSQEEYVMLQQCADQVDIMFTASA-MDQVSFDFLLSANVPFIKIGSGDSNNIPLIKYAASKQKPLII 111 (335)
Q Consensus 44 ~el~~e~~~~L~~~~~~~Gi~f~stp-fd~~svd~l~~l~v~~~KIaS~d~~n~~LL~~~a~~gkPvil 111 (335)
-+++.++.+.+.+.++++|+.+.+.. ...+.+..+.+.|++..- ...+...++.+++.|.++++
T Consensus 209 ~~~~~e~i~~~v~~A~~~g~~v~sH~~~~~~~i~~a~~~Gv~~~e----~~~~~e~~~~~~~~g~~v~~ 273 (383)
T PRK15446 209 ARYAPPNRRAIAALARARGIPLASHDDDTPEHVAEAHALGVAIAE----FPTTLEAARAARALGMSVLM 273 (383)
T ss_pred hhcCHHHHHHHHHHHHHCCCceeecCCCCHHHHHHHHHcCCceee----CCCcHHHHHHHHHCCCEEEe
Confidence 34788999999999999999999998 688899999999998874 45677888888888888775
No 498
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=62.99 E-value=54 Score=29.12 Aligned_cols=75 Identities=13% Similarity=0.211 Sum_probs=54.4
Q ss_pred HHHHHHHHHHcCCceEeccCC--hhhHHHHHhCCCCEEEEcCCCCCCH-------HHHHHHHh----cCCcEEEeCCCCC
Q psy17999 51 YVMLQQCADQVDIMFTASAMD--QVSFDFLLSANVPFIKIGSGDSNNI-------PLIKYAAS----KQKPLIISTGMLP 117 (335)
Q Consensus 51 ~~~L~~~~~~~Gi~f~stpfd--~~svd~l~~l~v~~~KIaS~d~~n~-------~LL~~~a~----~gkPvilStG~~~ 117 (335)
.....+..++.|+.+...=|+ ..++..+..+.++++||...-+.+. .+++.+.+ .|.. +|-+|.-
T Consensus 135 ~~~~i~~l~~~G~~ialddfg~~~~~~~~l~~l~~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-via~gVe- 212 (241)
T smart00052 135 AVATLQRLRELGVRIALDDFGTGYSSLSYLKRLPVDLLKIDKSFVRDLQTDPEDEAIVQSIIELAQKLGLQ-VVAEGVE- 212 (241)
T ss_pred HHHHHHHHHHCCCEEEEeCCCCcHHHHHHHHhCCCCeEEECHHHHhhhccChhHHHHHHHHHHHHHHCCCe-EEEecCC-
Confidence 446778889999999999885 4567888999999999997655433 55555443 3544 5566988
Q ss_pred CHHHHHHHHH
Q psy17999 118 SIEHVDNIYT 127 (335)
Q Consensus 118 tl~Ei~~Av~ 127 (335)
|.++...+-+
T Consensus 213 ~~~~~~~l~~ 222 (241)
T smart00052 213 TPEQLDLLRS 222 (241)
T ss_pred CHHHHHHHHH
Confidence 8888876543
No 499
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=62.84 E-value=1e+02 Score=31.49 Aligned_cols=85 Identities=8% Similarity=0.116 Sum_probs=55.8
Q ss_pred CCHHHHHHHHHHHHHcCCceEecc---CChhhHHHHHhCCCCEEEEcCCCCCCHHH----------------HHHHHhcC
Q psy17999 46 FSQEEYVMLQQCADQVDIMFTASA---MDQVSFDFLLSANVPFIKIGSGDSNNIPL----------------IKYAASKQ 106 (335)
Q Consensus 46 l~~e~~~~L~~~~~~~Gi~f~stp---fd~~svd~l~~l~v~~~KIaS~d~~n~~L----------------L~~~a~~g 106 (335)
...+++.+|.+..++.|+.|.+.. +|++-++.+.+.|+..+.+|=- ..|... ++.+.+.|
T Consensus 258 ~~~~~~~~l~~~l~~~~i~~~~~~~~~~~~e~l~~l~~aG~~~v~iGiE-S~s~~~L~~~~K~~~~~~~~~~i~~~~~~G 336 (472)
T TIGR03471 258 DDKPRAEEIARKLGPLGVTWSCNARANVDYETLKVMKENGLRLLLVGYE-SGDQQILKNIKKGLTVEIARRFTRDCHKLG 336 (472)
T ss_pred CCHHHHHHHHHHHhhcCceEEEEecCCCCHHHHHHHHHcCCCEEEEcCC-CCCHHHHHHhcCCCCHHHHHHHHHHHHHCC
Confidence 355677888888888898886654 6888889999999998877642 222233 33333446
Q ss_pred CcEEEe--CCC-CCCHHHHHHHHHHHHh
Q psy17999 107 KPLIIS--TGM-LPSIEHVDNIYTTVKQ 131 (335)
Q Consensus 107 kPvilS--tG~-~~tl~Ei~~Av~~i~~ 131 (335)
..+..+ .|. .-|.+++++.++++.+
T Consensus 337 i~v~~~~IiGlPget~e~~~~ti~~~~~ 364 (472)
T TIGR03471 337 IKVHGTFILGLPGETRETIRKTIDFAKE 364 (472)
T ss_pred CeEEEEEEEeCCCCCHHHHHHHHHHHHh
Confidence 655433 252 2378888888777765
No 500
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=62.80 E-value=38 Score=30.11 Aligned_cols=77 Identities=10% Similarity=0.175 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHcCCceEeccCC--hhhHHHHHhCCCCEEEEcCCCCCC-------HHHHHHHHh---cCCcEEEeCCCCC
Q psy17999 50 EYVMLQQCADQVDIMFTASAMD--QVSFDFLLSANVPFIKIGSGDSNN-------IPLIKYAAS---KQKPLIISTGMLP 117 (335)
Q Consensus 50 ~~~~L~~~~~~~Gi~f~stpfd--~~svd~l~~l~v~~~KIaS~d~~n-------~~LL~~~a~---~gkPvilStG~~~ 117 (335)
.+..+.+..++.|+.+...-|+ ..+++.+..+.++++|+....+.+ ..+++.+.+ .-..-+|-+|..
T Consensus 133 ~~~~~~~~l~~~G~~l~ld~~g~~~~~~~~l~~~~~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via~gVe- 211 (240)
T cd01948 133 EALATLRRLRALGVRIALDDFGTGYSSLSYLKRLPVDYLKIDRSFVRDIETDPEDRAIVRAIIALAHSLGLKVVAEGVE- 211 (240)
T ss_pred HHHHHHHHHHHCCCeEEEeCCCCcHhhHHHHHhCCCCEEEECHHHHHhHhcChhhHHHHHHHHHHHHHCCCeEEEEecC-
Confidence 4678888899999999998765 455678889999999999775544 444544443 333456778888
Q ss_pred CHHHHHHHHH
Q psy17999 118 SIEHVDNIYT 127 (335)
Q Consensus 118 tl~Ei~~Av~ 127 (335)
+.++...+.+
T Consensus 212 ~~~~~~~~~~ 221 (240)
T cd01948 212 TEEQLELLRE 221 (240)
T ss_pred CHHHHHHHHH
Confidence 8888776543
Done!