RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17999
(335 letters)
>d2zdra2 c.1.10.6 (A:2-281) Capsule biosynthesis protein SiaC,
N-terminal domain {Neisseria meningitidis [TaxId: 487]}
Length = 280
Score = 113 bits (283), Expect = 5e-30
Identities = 66/260 (25%), Positives = 115/260 (44%), Gaps = 27/260 (10%)
Query: 1 ECGADCVKFQKSCLSTKFTQSALDRPYLSPHAWANTYGQHKQHLEFSQEEYVMLQQCADQ 60
GA+ VK Q + + + + + P + + + ++E+ + L++ +
Sbjct: 45 NAGAEVVKHQTHIVEDEMSD---EAKQVIPGNADVSIYEIMERCALNEEDEIKLKEYVES 101
Query: 61 VDIMFTASAMDQVSFDFLLSANVPFIKIGSGDSNNIPLIKYAASKQKPLIISTGMLPSIE 120
++F ++ + + L ++P KIGSG+ NN PLIK AS KP+I+STGM
Sbjct: 102 KGMIFISTPFSRAAALRLQRMDIPAYKIGSGECNNYPLIKLVASFGKPIILSTGM----- 156
Query: 121 HVDNIYTTVKQYHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYPTPYHDINLNVI 180
+ + + +++ ++LHC + YPTPY D+ L +
Sbjct: 157 -------------------NSIESIKKSVEIIREAGVPYALLHCTNIYPTPYEDVRLGGM 197
Query: 181 HTLRSRYPDIPIGYSGHENGVHVCYAAVAMGAQIIEKHFTLDKSWKGSDHASSLTPPELK 240
+ L +PD IG S H + C AVA+G I+E+HFT G D S+ P K
Sbjct: 198 NDLSEAFPDAIIGLSDHTLDNYACLGAVALGGSILERHFTDRMDRPGPDIVCSMNPDTFK 257
Query: 241 ALVTGIRDIEQSLGSPTKRM 260
L G ++ + G +
Sbjct: 258 ELKQGAHALKLARGGKKDTI 277
>d1vlia2 c.1.10.6 (A:2-296) Spore coat polysaccharide biosynthesis
protein SpsE, N-terminal domain {Bacillus subtilis
[TaxId: 1423]}
Length = 295
Score = 109 bits (273), Expect = 2e-28
Identities = 76/283 (26%), Positives = 122/283 (43%), Gaps = 31/283 (10%)
Query: 1 ECGADCVKFQKSCLSTKFTQSALDRPYLSPHAWANTYGQHKQHLEFSQEEYVMLQQCADQ 60
E GAD VKFQ + + + + Q +E E + L +
Sbjct: 42 EAGADAVKFQMFQADRMYQKDPGLYKTAAGKDV--SIFSLVQSMEMPAEWILPLLDYCRE 99
Query: 61 VDIMFTASAMDQVSFDFLLSANVPFIKIGSGDSNNIPLIKYAASKQKPLIISTGMLPSIE 120
++F ++ D+ S D L S + KI S + N++PL+KY A +P
Sbjct: 100 KQVIFLSTVCDEGSADLLQSTSPSAFKIASYEINHLPLLKYVARLNRP-----------M 148
Query: 121 HVDNIYTTVKQYHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYPTPYHDINLNVI 180
+ H + + ++ ++I+HCV+ YP P NL+VI
Sbjct: 149 IFSTAGAEISDVHEAWRTIRA------------EGNNQIAIMHCVAKYPAPPEYSNLSVI 196
Query: 181 HTLRSRYPDIPIGYSGHENGVH-VCYAAVAMGAQIIEKHFTLDKSWKGSDHASSLTPPEL 239
L + +P+ IG+S H AAV +GA++IEKHFT+DK+ G+DH+ +L P EL
Sbjct: 197 PMLAAAFPEAVIGFSDHSEHPTEAPCAAVRLGAKLIEKHFTIDKNLPGADHSFALNPDEL 256
Query: 240 KALVTGIRDIEQSLGSPTKRMQVSEAPCYAKLGKCIVSSCDIQ 282
K +V GIR E L + + LG ++ I+
Sbjct: 257 KEMVDGIRKTEAELKQGITKPVSEK-----LLGSSYKTTTAIE 294
>d1o60a_ c.1.10.4 (A:) 3-deoxy-D-manno-octulosonate 8-phosphate
synthase (KDO8P synthase) {Haemophilus influenzae
[TaxId: 727]}
Length = 281
Score = 75.5 bits (184), Expect = 3e-16
Identities = 27/257 (10%), Positives = 71/257 (27%), Gaps = 29/257 (11%)
Query: 1 ECGADCVKFQKSCLSTKFTQSALDRPYLSPHAWANTYGQHKQHLEFSQEEYVMLQQCADQ 60
+ G V + EE + + Q
Sbjct: 46 KLGVPYVFKASF--------------------DKANRSSIHSYRGPGMEEGLKIFQELKD 85
Query: 61 VDIMFTASAMDQVSFDFLLSANVPFIKIGSGDSNNIPLIKYAASKQKPLIISTGMLPSIE 120
+ + + ++ ++ V I++ + + L++ A + + S
Sbjct: 86 TFGVKIITDVHEIYQCQPVADVVDIIQLPAFLARQTDLVEAMAKTGAVINVKKPQFLSPS 145
Query: 121 HVDNIYTTVKQYHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYPTPYHDINLNVI 180
+ NI +++ ++ IL + + P + +
Sbjct: 146 QMGNIVEKIEECGNDKIILCDRGTNFGYDNLIVDMLGFSVMKKASKGSPVIFDVTHSLQC 205
Query: 181 HTLRSRYPDIPIGYSGHENGVHVCYAAVAMGAQ--IIEKHFTLDKSWKGSDHASSLTPPE 238
P + + +A+G +E H +++ D S+L
Sbjct: 206 R-----DPFGAASSGRRAQVTELARSGLAVGIAGLFLEAHPNPNQAK--CDGPSALPLSA 258
Query: 239 LKALVTGIRDIEQSLGS 255
L+ V+ ++ I+ + S
Sbjct: 259 LEGFVSQMKAIDDLVKS 275
>d1vr6a1 c.1.10.4 (A:1-338)
3-deoxy-D-arabino-heptulosonate-7-phosphate synthase
(DAHP synthase, AroG) {Thermotoga maritima [TaxId:
2336]}
Length = 338
Score = 62.0 bits (150), Expect = 2e-11
Identities = 38/209 (18%), Positives = 78/209 (37%), Gaps = 30/209 (14%)
Query: 53 MLQQCADQVDIMFTASAMDQVSFDFLLSANVPFIKIGSGDSNNIPLIKYAASKQKPLIIS 112
L++ AD+ + A+ + + + I+IG+ ++ N L+ A S KP+++
Sbjct: 149 YLREAADKYGMYVVTEALGEDDLPKV-AEYADIIQIGARNAQNFRLLSKAGSYNKPVLLK 207
Query: 113 TGMLPSIEHVDNIYTTVKQYHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYPTPY 172
G + +IE + + L +
Sbjct: 208 RGFMNTIEEFLLSAEYIANSGNT--------------------KIILCERGIRTFEKATR 247
Query: 173 HDINLNVIHTLRSRYPDIPIGYSGHENG-----VHVCYAAVAMGAQ--IIEKHFTLDKSW 225
+ ++++ + +R + H G + + AA+A+GA I+E H +K+
Sbjct: 248 NTLDISAVPIIRKESHLPILVDPSHSGGRRDLVIPLSRAAIAVGAHGIIVEVHPEPEKAL 307
Query: 226 KGSDHASSLTPPELKALVTGIRDIEQSLG 254
SD SL K LV ++ + +LG
Sbjct: 308 --SDGKQSLDFELFKELVQEMKKLADALG 334
>d1opsa_ b.85.1.1 (A:) Type III antifreeze protein, AFP III {Ocean
pout (Macrozoarces americanus), different isoforms
[TaxId: 8199]}
Length = 64
Score = 54.0 bits (130), Expect = 2e-10
Identities = 12/53 (22%), Positives = 27/53 (50%)
Query: 273 KCIVSSCDIQAGTVLQEFHVCIKVAEPKGICGTRYASVMGRKVNRDIRRDESI 325
+ +V++ I T L + KV P GI + ++G++VN + + +++
Sbjct: 2 QSVVATQLIPMNTALTPAMMEGKVTNPIGIPFAEMSQLVGKQVNTPVAKGQTL 54
>d2zdra1 b.85.1.1 (A:282-349) Capsule biosynthesis protein SiaC,
C-terminal domain {Neisseria meningitidis [TaxId: 487]}
Length = 68
Score = 50.8 bits (122), Expect = 3e-09
Identities = 14/68 (20%), Positives = 29/68 (42%)
Query: 264 EAPCYAKLGKCIVSSCDIQAGTVLQEFHVCIKVAEPKGICGTRYASVMGRKVNRDIRRDE 323
E P +V+ DI+ G +L ++ +K Y ++ G+ +IR+
Sbjct: 1 EKPTKDFAFASVVADKDIKKGELLSGDNLWVKRPGNGDFSVNEYETLFGKVAACNIRKGA 60
Query: 324 SIQDIDLD 331
I+ D++
Sbjct: 61 QIKKTDIE 68
>d1ucsa_ b.85.1.1 (A:) Type III antifreeze protein, AFP III
{Antarctic eel pout (Lycodichthys dearborni), RD1
isoform [TaxId: 8201]}
Length = 64
Score = 47.5 bits (113), Expect = 4e-08
Identities = 12/51 (23%), Positives = 23/51 (45%)
Query: 275 IVSSCDIQAGTVLQEFHVCIKVAEPKGICGTRYASVMGRKVNRDIRRDESI 325
+V++ I T L + +V P GI ++G +VNR + ++
Sbjct: 5 VVANQLIPINTALTLIMMKAEVVTPMGIPAEEIPKLVGMQVNRAVPLGTTL 55
>d1vlia1 b.85.1.1 (A:297-368) Spore coat polysaccharide biosynthesis
protein SpsE, C-terminal domain {Bacillus subtilis
[TaxId: 1423]}
Length = 72
Score = 41.2 bits (97), Expect = 8e-06
Identities = 14/61 (22%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Query: 273 KCIVSSCDIQAGTVLQEFHVCIK--VAEPKGICGTRYASVM-GRKVNRDIRRDESIQDID 329
+ I ++ IQ G E ++ + +P+G+ + + G + RDI D I D
Sbjct: 8 RGIFTTAPIQKGEAFSEDNIAVLRPGQKPQGLHPRFFELLTSGVRAVRDIPADTGIVWDD 67
Query: 330 L 330
+
Sbjct: 68 I 68
>d2bkra1 d.3.1.7 (A:1-212) Sentrin-specific protease 8, SENP8 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 212
Score = 32.0 bits (72), Expect = 0.069
Identities = 17/132 (12%), Positives = 34/132 (25%), Gaps = 13/132 (9%)
Query: 123 DNIYTTVKQYHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYPTPYHDINLNVIHT 182
DN H +L + + + SN V+ +
Sbjct: 92 DNSNQAAGGSHWSLLVYLQD--KNSFFHYDSHSRSNSVHAKQVAEKLEAFLGRK---GDK 146
Query: 183 LRSRYPDIPIGYSGHENGVHVCYAAVAMGAQIIEKHFTLDKSWKGSDHASSLTPPELKAL 242
L P + ++ G++V A+ + LTP +
Sbjct: 147 LAFVEEKAPAQQNSYDCGMYVICNTEALCQNFFRQQTESLLQL--------LTPAYITKK 198
Query: 243 VTGIRDIEQSLG 254
+D+ +L
Sbjct: 199 RGEWKDLIATLA 210
>d1t71a_ d.159.1.9 (A:) Hypothetical protein MPN349 {Mycoplasma
pneumoniae [TaxId: 2104]}
Length = 281
Score = 26.4 bits (58), Expect = 5.5
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 301 GICGTRYASVMGRKVNRDIRR 321
G+CG + SV+G + IR
Sbjct: 205 GMCGPGFGSVIGANPEQSIRL 225
>d1rypd_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 241
Score = 25.4 bits (55), Expect = 9.7
Identities = 15/140 (10%), Positives = 50/140 (35%), Gaps = 7/140 (5%)
Query: 124 NIYTTVKQYHSNLSILHCVSAYPTPYPTVKQYHSNLSILHCVSAYPTPYHDINLNVIHTL 183
+ +++ P + +Y + + + S P+ L
Sbjct: 79 DSRILIEKARVEAQSHRLTLEDPVTVEYLTRYVAGVQQRYTQSGGVRPFGVSTLIAGFDP 138
Query: 184 RSRYPDIPIGYSGHENGVHVCYAAVAMGAQIIEKHFTLDKSWKGSDHASSLTPPELKALV 243
R P + Y +G++ ++A +G L+K++ + +++ + +
Sbjct: 139 RDDEPKL---YQTEPSGIYSSWSAQTIGRNSKTVREFLEKNYDRKEPPATVE----ECVK 191
Query: 244 TGIRDIEQSLGSPTKRMQVS 263
+R + + + + K ++++
Sbjct: 192 LTVRSLLEVVQTGAKNIEIT 211
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.133 0.405
Gapped
Lambda K H
0.267 0.0433 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,225,215
Number of extensions: 54133
Number of successful extensions: 151
Number of sequences better than 10.0: 1
Number of HSP's gapped: 145
Number of HSP's successfully gapped: 13
Length of query: 335
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 249
Effective length of database: 1,226,816
Effective search space: 305477184
Effective search space used: 305477184
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.9 bits)