BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy180
(77 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q32PJ3|ORC3_BOVIN Origin recognition complex subunit 3 OS=Bos taurus GN=ORC3 PE=2
SV=1
Length = 712
Score = 92.0 bits (227), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 44/83 (53%), Positives = 56/83 (67%), Gaps = 9/83 (10%)
Query: 2 PDVSLAYKLHLESATMINMHDWLQSFATIVNPDGKM---------SDATIKARFTQAVSE 52
PD+ +AYKLHLE + +IN+ DW ++FAT+V KM + I ARF +AVSE
Sbjct: 628 PDICIAYKLHLECSRLINLVDWSEAFATVVTAAEKMDANSVTSGERNEIIHARFIRAVSE 687
Query: 53 LQFLGFIKNCKQKIDHVSRLTWG 75
L+ LGFIK KQK DHV+RLTWG
Sbjct: 688 LELLGFIKPTKQKTDHVARLTWG 710
>sp|Q5DJU3|ORC3_SPECI Origin recognition complex subunit 3 OS=Spermophilus citellus
GN=ORC3 PE=2 SV=1
Length = 713
Score = 92.0 bits (227), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 44/83 (53%), Positives = 56/83 (67%), Gaps = 9/83 (10%)
Query: 2 PDVSLAYKLHLESATMINMHDWLQSFATIVNPDGKMS---------DATIKARFTQAVSE 52
PD+ +AYKLHLE + +IN+ DW ++FAT+V KM + I ARF +AVSE
Sbjct: 629 PDICIAYKLHLECSRLINLVDWSEAFATVVTAAEKMESNSATTEEMNEIIHARFIRAVSE 688
Query: 53 LQFLGFIKNCKQKIDHVSRLTWG 75
L+ LGFIK KQK DHV+RLTWG
Sbjct: 689 LELLGFIKPTKQKTDHVARLTWG 711
>sp|Q9JK30|ORC3_MOUSE Origin recognition complex subunit 3 OS=Mus musculus GN=Orc3 PE=1
SV=1
Length = 715
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 44/83 (53%), Positives = 55/83 (66%), Gaps = 9/83 (10%)
Query: 2 PDVSLAYKLHLESATMINMHDWLQSFATIVNPDGKMS---------DATIKARFTQAVSE 52
PD+ +AYKLHLE + +IN+ DW ++FAT+V KM I ARF +AVSE
Sbjct: 631 PDICIAYKLHLECSLLINLVDWAEAFATVVTAAEKMDANSTVSEEMSEVIHARFIRAVSE 690
Query: 53 LQFLGFIKNCKQKIDHVSRLTWG 75
L+ LGFIK KQK DHV+RLTWG
Sbjct: 691 LELLGFIKPTKQKTDHVARLTWG 713
>sp|Q9UBD5|ORC3_HUMAN Origin recognition complex subunit 3 OS=Homo sapiens GN=ORC3 PE=1
SV=1
Length = 711
Score = 90.1 bits (222), Expect = 3e-18, Method: Composition-based stats.
Identities = 44/83 (53%), Positives = 56/83 (67%), Gaps = 9/83 (10%)
Query: 2 PDVSLAYKLHLESATMINMHDWLQSFATIVNPDGKMS---------DATIKARFTQAVSE 52
PD+ +AYKLHLE + +IN+ DW ++FAT+V KM + I ARF +AVSE
Sbjct: 627 PDICIAYKLHLECSRLINLVDWSEAFATVVTAAEKMDANSATSEEMNEIIHARFIRAVSE 686
Query: 53 LQFLGFIKNCKQKIDHVSRLTWG 75
L+ LGFIK KQK DHV+RLTWG
Sbjct: 687 LELLGFIKPTKQKTDHVARLTWG 709
>sp|Q4R180|ORC3_RAT Origin recognition complex subunit 3 OS=Rattus norvegicus GN=Orc3
PE=2 SV=1
Length = 711
Score = 89.7 bits (221), Expect = 5e-18, Method: Composition-based stats.
Identities = 44/83 (53%), Positives = 56/83 (67%), Gaps = 9/83 (10%)
Query: 2 PDVSLAYKLHLESATMINMHDWLQSFATIVNPDGKMSDAT---------IKARFTQAVSE 52
PD+ +AYKLHLE + +IN+ DW ++FAT+V KM + I ARF +AVSE
Sbjct: 627 PDICIAYKLHLECSRLINLVDWSEAFATVVTAAEKMDTNSTVSEEMSEIIHARFIRAVSE 686
Query: 53 LQFLGFIKNCKQKIDHVSRLTWG 75
L+ LGFIK KQK DHV+RLTWG
Sbjct: 687 LELLGFIKPTKQKTDHVARLTWG 709
>sp|Q10067|ORC3_SCHPO Origin recognition complex subunit 3 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=orc3 PE=1 SV=2
Length = 690
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 29/104 (27%), Positives = 51/104 (49%), Gaps = 30/104 (28%)
Query: 1 MPDVSLAYKLHLESATMINMHDWLQSFATIV----------------NPDG--------- 35
+PD+S+ YKL+ ES ++N++DW +F+ + +P G
Sbjct: 585 LPDLSILYKLYSESGALLNLYDWYIAFSEHLQAGKENLKEDDNHPRESPQGNLQRELNEL 644
Query: 36 -----KMSDATIKARFTQAVSELQFLGFIKNCKQKIDHVSRLTW 74
K+ +A +++RF + EL+FLG IK +K DHV + +
Sbjct: 645 DEDKRKLEEAKLQSRFLFGLEELRFLGLIKPTARKTDHVMKTIY 688
>sp|Q55BR6|ORC3_DICDI Origin recognition complex subunit 3 OS=Dictyostelium discoideum
GN=orcC PE=3 SV=2
Length = 1080
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 1 MPDVSLAYKLHLESATMINMHDWLQSFATIVNPDGKMSDATIKARFTQAVSELQFLGFIK 60
M D S+++ L L S IN DWL SF +I+N D + +KARF ++V L IK
Sbjct: 1004 MDDFSISFILLLRSGRYINYFDWLTSFCSIINGDNNPT-PNLKARFIKSVDTFVSLELIK 1062
Query: 61 NCKQKIDHVSRLTW 74
+++ DH ++ +
Sbjct: 1063 KTRKRKDHFEKIAF 1076
>sp|Q6PEH4|DIEXF_DANRE Digestive organ expansion factor OS=Danio rerio GN=diexf PE=2 SV=2
Length = 753
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 24 LQSFATIVNPDGKMSDATIKARFTQAVSE 52
+Q+F T++ P GK +DA+ K RF + E
Sbjct: 363 VQTFMTLLEPKGKKTDASNKKRFKEEYGE 391
>sp|P22464|ANXB9_DROME Annexin-B9 OS=Drosophila melanogaster GN=AnnIX PE=2 SV=2
Length = 324
Score = 29.3 bits (64), Expect = 7.0, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 25 QSFATIVNPDGKMSDATIKARFTQAVSELQFLGFIKNCKQKIDHVS 70
Q F N G + IK F+ +V E FL +K CK KID+ S
Sbjct: 214 QIFLEYENLSGNDIEKAIKREFSGSV-EKGFLAIVKCCKSKIDYFS 258
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.131 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,334,248
Number of Sequences: 539616
Number of extensions: 646474
Number of successful extensions: 1963
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1948
Number of HSP's gapped (non-prelim): 11
length of query: 77
length of database: 191,569,459
effective HSP length: 48
effective length of query: 29
effective length of database: 165,667,891
effective search space: 4804368839
effective search space used: 4804368839
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)