Query psy180
Match_columns 77
No_of_seqs 100 out of 156
Neff 5.2
Searched_HMMs 46136
Date Fri Aug 16 19:43:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy180.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/180hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2538|consensus 99.9 4.2E-28 9.1E-33 192.6 3.8 74 1-74 499-578 (578)
2 PF09079 Cdc6_C: CDC6, C termi 93.6 0.22 4.8E-06 30.2 4.6 55 5-61 2-57 (85)
3 cd08768 Cdc6_C Winged-helix do 92.3 0.26 5.7E-06 29.5 3.7 44 16-61 21-64 (87)
4 PF01475 FUR: Ferric uptake re 79.7 9.3 0.0002 24.1 5.7 49 6-61 12-60 (120)
5 TIGR02928 orc1/cdc6 family rep 79.5 3.4 7.3E-05 30.3 4.0 46 14-61 304-349 (365)
6 PRK02363 DNA-directed RNA poly 77.2 7.5 0.00016 26.2 4.8 49 1-50 3-51 (129)
7 KOG1151|consensus 74.7 2.5 5.4E-05 35.3 2.4 58 4-61 514-589 (775)
8 KOG3789|consensus 62.9 18 0.00039 28.8 4.8 51 2-55 292-347 (396)
9 PF14338 Mrr_N: Mrr N-terminal 59.2 38 0.00083 20.6 5.0 57 8-64 10-75 (92)
10 PF10668 Phage_terminase: Phag 55.8 15 0.00032 21.9 2.5 23 2-24 7-29 (60)
11 KOG0502|consensus 55.1 4.5 9.8E-05 30.7 0.3 19 6-24 207-225 (296)
12 COG3343 RpoE DNA-directed RNA 51.5 42 0.00092 24.1 4.7 47 3-50 16-62 (175)
13 PF04854 DUF624: Protein of un 50.0 26 0.00056 20.5 3.0 30 2-31 23-56 (77)
14 PF02319 E2F_TDP: E2F/DP famil 42.7 19 0.00041 21.4 1.6 40 15-61 22-61 (71)
15 PTZ00112 origin recognition co 42.7 43 0.00093 30.2 4.3 43 17-60 1040-1084(1164)
16 COG3611 DnaB Replication initi 40.8 27 0.00059 28.0 2.6 59 3-61 20-89 (417)
17 PRK00411 cdc6 cell division co 38.8 55 0.0012 24.2 3.9 44 16-61 314-357 (394)
18 PF12035 DUF3521: Protein of u 37.2 26 0.00057 18.7 1.5 11 54-64 21-31 (35)
19 cd07153 Fur_like Ferric uptake 36.7 1E+02 0.0022 18.9 5.5 49 6-61 5-53 (116)
20 KOG2181|consensus 36.4 39 0.00085 26.8 2.9 42 9-52 60-116 (415)
21 PF14178 YppF: YppF-like prote 35.1 1E+02 0.0022 18.5 3.9 44 19-62 2-58 (60)
22 PHA03358 Alkaline exonuclease; 35.1 24 0.00053 22.0 1.3 17 14-30 19-35 (75)
23 KOG0131|consensus 33.6 23 0.00049 25.9 1.1 22 5-26 24-48 (203)
24 PF11426 Tn7_TnsC_Int: Tn7 tra 32.4 42 0.00092 19.1 1.9 21 6-26 26-46 (48)
25 COG0565 LasT rRNA methylase [T 32.3 97 0.0021 23.1 4.3 51 15-65 148-202 (242)
26 PF02791 DDT: DDT domain; Int 30.4 25 0.00054 20.2 0.7 21 15-35 5-25 (61)
27 TIGR02325 C_P_lyase_phnF phosp 30.4 34 0.00074 23.6 1.5 35 37-71 33-74 (238)
28 PF06218 NPR2: Nitrogen permea 30.3 71 0.0015 25.5 3.5 31 1-31 320-350 (428)
29 PF13835 DUF4194: Domain of un 29.9 1.7E+02 0.0037 19.4 6.2 48 15-64 98-145 (166)
30 COG2188 PhnF Transcriptional r 29.1 33 0.00072 24.3 1.3 35 38-72 33-74 (236)
31 cd04236 AAK_NAGS-Urea AAK_NAGS 28.9 1.2E+02 0.0025 22.6 4.2 43 16-58 15-68 (271)
32 COG1933 Archaeal DNA polymeras 27.9 32 0.00069 26.0 1.1 37 18-54 106-142 (253)
33 smart00571 DDT domain in diffe 27.5 56 0.0012 18.9 1.9 34 15-51 5-38 (63)
34 smart00054 EFh EF-hand, calciu 27.5 61 0.0013 13.5 2.5 25 5-29 3-28 (29)
35 PF03732 Retrotrans_gag: Retro 27.2 66 0.0014 18.4 2.2 31 20-50 63-94 (96)
36 TIGR01610 phage_O_Nterm phage 27.1 48 0.001 20.5 1.7 20 44-63 62-81 (95)
37 PRK11402 DNA-binding transcrip 25.8 48 0.001 23.2 1.6 34 37-70 34-74 (241)
38 PF11154 DUF2934: Protein of u 25.6 1.1E+02 0.0025 16.3 2.8 26 5-30 10-37 (40)
39 PF12626 PolyA_pol_arg_C: Poly 24.1 41 0.00088 22.4 1.0 16 15-30 78-93 (124)
40 TIGR02404 trehalos_R_Bsub treh 23.5 61 0.0013 22.5 1.8 35 36-70 24-65 (233)
41 PF03288 Pox_D5: Poxvirus D5 p 22.5 1.1E+02 0.0023 18.0 2.5 38 20-61 27-64 (86)
42 PHA03149 hypothetical protein; 22.4 35 0.00075 20.8 0.3 17 14-30 18-34 (66)
43 PRK14999 histidine utilization 22.1 57 0.0012 22.8 1.5 34 37-70 37-77 (241)
44 PF06395 CDC24: CDC24 Calponin 22.1 45 0.00098 21.3 0.8 48 4-52 3-55 (89)
45 PF00392 GntR: Bacterial regul 21.8 68 0.0015 18.0 1.5 23 44-66 39-61 (64)
46 COG0735 Fur Fe2+/Zn2+ uptake r 20.9 2.6E+02 0.0057 18.5 5.5 49 6-61 25-73 (145)
47 KOG0589|consensus 20.8 99 0.0022 24.8 2.7 20 38-57 104-123 (426)
48 PRK10079 phosphonate metabolis 20.8 73 0.0016 22.3 1.8 35 36-70 35-76 (241)
49 COG1384 LysS Lysyl-tRNA synthe 20.6 1.1E+02 0.0024 25.3 3.0 29 5-35 468-496 (521)
50 PF08311 Mad3_BUB1_I: Mad3/BUB 20.6 1.9E+02 0.0042 18.7 3.7 45 3-49 81-125 (126)
51 PF13730 HTH_36: Helix-turn-he 20.3 81 0.0018 16.9 1.6 17 43-59 39-55 (55)
52 PF01388 ARID: ARID/BRIGHT DNA 20.1 72 0.0016 19.1 1.4 15 14-28 32-46 (92)
53 PRK09764 DNA-binding transcrip 20.1 72 0.0016 22.4 1.6 34 37-70 30-70 (240)
No 1
>KOG2538|consensus
Probab=99.94 E-value=4.2e-28 Score=192.55 Aligned_cols=74 Identities=47% Similarity=0.824 Sum_probs=68.0
Q ss_pred CchHHHHHHHHHHhCCcccHHHHHHHhhcccCCCCCC------chHHHHHHHHHHHHHHHhhccccCCCCCcceeeeeee
Q psy180 1 MPDVSLAYKLHLESATMINMHDWLQSFATIVNPDGKM------SDATIKARFTQAVSELQFLGFIKNCKQKIDHVSRLTW 74 (77)
Q Consensus 1 ~Pd~~ily~Ly~E~g~~INlyDw~~AF~~~~~~~~~~------~~~~~~arF~rav~EL~~lG~ik~s~rk~Dhv~K~~w 74 (77)
+||+|++|+||+|+|++||+||||+||.+++.+...+ .++.+|+||+|||+|||+||+||||++|+|||+|++|
T Consensus 499 aPdl~i~yKL~~E~~~liNl~Dw~~AF~e~l~~~~~E~~n~~~~dP~~~~rF~raV~eLq~lG~IKpss~KtDhv~k~~w 578 (578)
T KOG2538|consen 499 APDLSILYKLYLECGRLINLYDWYIAFREVLLENDREYMNPEESDPQIQIRFFRAVDELQFLGLIKPSSRKTDHVLKLTW 578 (578)
T ss_pred CchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhccccccCHHHHHHHHHHHHHHHhccccCccccchHHHHHhcC
Confidence 5999999999999999999999999999999822211 3789999999999999999999999999999999999
No 2
>PF09079 Cdc6_C: CDC6, C terminal ; InterPro: IPR015163 The C-terminal domain of CDC6 assumes a winged helix fold, with a five alpha-helical bundle (alpha15-alpha19) structure, backed on one side by three beta strands (beta6-beta8). It has been shown that this domain acts as a DNA-localisation factor, however its exact function is, as yet, unknown. Putative functions include: (1) mediation of protein-protein interactions and (2) regulation of nucleotide binding and hydrolysis. Mutagenesis studies have shown that this domain is essential for appropriate Cdc6 activity []. ; PDB: 2QBY_A 2V1U_A 1W5T_A 1W5S_B 1FNN_B.
Probab=93.55 E-value=0.22 Score=30.16 Aligned_cols=55 Identities=22% Similarity=0.323 Sum_probs=33.6
Q ss_pred HHHHHHHHHhC-CcccHHHHHHHhhcccCCCCCCchHHHHHHHHHHHHHHHhhccccC
Q psy180 5 SLAYKLHLESA-TMINMHDWLQSFATIVNPDGKMSDATIKARFTQAVSELQFLGFIKN 61 (77)
Q Consensus 5 ~ily~Ly~E~g-~~INlyDw~~AF~~~~~~~~~~~~~~~~arF~rav~EL~~lG~ik~ 61 (77)
+-+-.+.++.+ .-++.-+-|+.++.+.+... -++..+-||..-+.||+++|+|..
T Consensus 2 ~Al~~~~~~~~~~~~~~~~vy~~Y~~lc~~~~--~~pls~~r~~~~l~eL~~~gli~~ 57 (85)
T PF09079_consen 2 LALAALLKEGGKEEVTTGEVYEVYEELCESLG--VDPLSYRRFSDYLSELEMLGLIES 57 (85)
T ss_dssp HHHHHHHHHCTSSSEEHHHHHHHHHHHHHHTT--S----HHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHhCCCCceeHHHHHHHHHHHHHHcC--CCCCCHHHHHHHHHHHHhCCCeEE
Confidence 34445566666 56665544444444433222 167889999999999999999985
No 3
>cd08768 Cdc6_C Winged-helix domain of essential DNA replication protein Cell division control protein (Cdc6), which mediates DNA binding. This model characterizes the winged-helix, C-terminal domain of the Cell division control protein (Cdc6_C). Cdc6 (also known as Cell division cycle 6 or Cdc18) functions as a regulator at the early stages of DNA replication, by helping to recruit and load the Minichromosome Maintenance Complex (MCM) onto DNA and may have additional roles in the control of mitotic entry. Precise duplication of chromosomal DNA is required for genomic stability during replication. Cdc6 has an essential role in DNA replication and irregular expression of Cdc6 may lead to genomic instability. Cdc6 over-expression is observed in many cancerous lesions. DNA replication begins when an origin recognition complex (ORC) binds to a replication origin site on the chromatin. Studies indicate that Cdc6 interacts with ORC through the Orc1 subunit, and that this association increases
Probab=92.31 E-value=0.26 Score=29.45 Aligned_cols=44 Identities=18% Similarity=0.375 Sum_probs=31.2
Q ss_pred CcccHHHHHHHhhcccCCCCCCchHHHHHHHHHHHHHHHhhccccC
Q psy180 16 TMINMHDWLQSFATIVNPDGKMSDATIKARFTQAVSELQFLGFIKN 61 (77)
Q Consensus 16 ~~INlyDw~~AF~~~~~~~~~~~~~~~~arF~rav~EL~~lG~ik~ 61 (77)
..++.-|-|+.++...+... -++..+-+|..-+.||+.+|+|..
T Consensus 21 ~~~~~~~vy~~Y~~~c~~~~--~~~l~~~~~~~~l~~L~~~gli~~ 64 (87)
T cd08768 21 EEATTGEVYEVYEELCEEIG--VDPLTQRRISDLLSELEMLGLLET 64 (87)
T ss_pred CCccHHHHHHHHHHHHHHcC--CCCCcHHHHHHHHHHHHHcCCeEE
Confidence 34666555555555544332 256778999999999999999984
No 4
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=79.71 E-value=9.3 Score=24.10 Aligned_cols=49 Identities=14% Similarity=0.123 Sum_probs=40.5
Q ss_pred HHHHHHHHhCCcccHHHHHHHhhcccCCCCCCchHHHHHHHHHHHHHHHhhccccC
Q psy180 6 LAYKLHLESATMINMHDWLQSFATIVNPDGKMSDATIKARFTQAVSELQFLGFIKN 61 (77)
Q Consensus 6 ily~Ly~E~g~~INlyDw~~AF~~~~~~~~~~~~~~~~arF~rav~EL~~lG~ik~ 61 (77)
.++.+..+++.-+++++.|....+.- .+.-++-.+|++..|.=.|+|+.
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~-------~~is~~TVYR~L~~L~e~Gli~~ 60 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKG-------PRISLATVYRTLDLLEEAGLIRK 60 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTT-------TT--HHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhcc-------CCcCHHHHHHHHHHHHHCCeEEE
Confidence 57788899988999999999998532 23458999999999999999995
No 5
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=79.50 E-value=3.4 Score=30.29 Aligned_cols=46 Identities=15% Similarity=0.351 Sum_probs=35.9
Q ss_pred hCCcccHHHHHHHhhcccCCCCCCchHHHHHHHHHHHHHHHhhccccC
Q psy180 14 SATMINMHDWLQSFATIVNPDGKMSDATIKARFTQAVSELQFLGFIKN 61 (77)
Q Consensus 14 ~g~~INlyDw~~AF~~~~~~~~~~~~~~~~arF~rav~EL~~lG~ik~ 61 (77)
....|+..|.|..++...+.-. -++....+|...+.+|+.+|+|..
T Consensus 304 ~~~~~~~~~~~~~y~~~~~~~~--~~~~~~~~~~~~l~~l~~~gli~~ 349 (365)
T TIGR02928 304 DEDPFRTGEVYEVYKEVCEDIG--VDPLTQRRISDLLNELDMLGLVEA 349 (365)
T ss_pred CCCCccHHHHHHHHHHHHHhcC--CCCCcHHHHHHHHHHHHhcCCeEE
Confidence 3456899999998887654322 145667999999999999999994
No 6
>PRK02363 DNA-directed RNA polymerase subunit delta; Reviewed
Probab=77.21 E-value=7.5 Score=26.20 Aligned_cols=49 Identities=12% Similarity=0.192 Sum_probs=37.4
Q ss_pred CchHHHHHHHHHHhCCcccHHHHHHHhhcccCCCCCCchHHHHHHHHHHH
Q psy180 1 MPDVSLAYKLHLESATMINMHDWLQSFATIVNPDGKMSDATIKARFTQAV 50 (77)
Q Consensus 1 ~Pd~~ily~Ly~E~g~~INlyDw~~AF~~~~~~~~~~~~~~~~arF~rav 50 (77)
+.-+-++|.+..+.|..++.+|.+....+.++..... .+...+.||.-+
T Consensus 3 ~S~idvAy~iL~~~~~~m~f~dL~~ev~~~~~~s~e~-~~~~iaq~YtdL 51 (129)
T PRK02363 3 LSLIEVAYEILKEKKEPMSFYDLVNEIQKYLGKSDEE-IRERIAQFYTDL 51 (129)
T ss_pred ccHHHHHHHHHHHcCCcccHHHHHHHHHHHhCCCHHH-HHHHHHHHHHHH
Confidence 3567899999999999999999999999887754421 345566666543
No 7
>KOG1151|consensus
Probab=74.74 E-value=2.5 Score=35.27 Aligned_cols=58 Identities=24% Similarity=0.422 Sum_probs=47.0
Q ss_pred HHHHHHHHHH--hCCcccHHHHHH----HhhcccCCCCCC------------chHHHHHHHHHHHHHHHhhccccC
Q psy180 4 VSLAYKLHLE--SATMINMHDWLQ----SFATIVNPDGKM------------SDATIKARFTQAVSELQFLGFIKN 61 (77)
Q Consensus 4 ~~ily~Ly~E--~g~~INlyDw~~----AF~~~~~~~~~~------------~~~~~~arF~rav~EL~~lG~ik~ 61 (77)
.|.-|.+++| +.+.|-+||+|. +||.+++=-+.. +|+++.+--||-|.-|.||.=|||
T Consensus 514 AcREyrIHKeLDHpRIVKlYDyfslDtdsFCTVLEYceGNDLDFYLKQhklmSEKEARSIiMQiVnAL~YLNEikp 589 (775)
T KOG1151|consen 514 ACREYRIHKELDHPRIVKLYDYFSLDTDSFCTVLEYCEGNDLDFYLKQHKLMSEKEARSIIMQIVNALKYLNEIKP 589 (775)
T ss_pred HHHHHhhhhccCcceeeeeeeeeeeccccceeeeeecCCCchhHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCC
Confidence 3666777766 499999999995 899998633221 489999999999999999999886
No 8
>KOG3789|consensus
Probab=62.91 E-value=18 Score=28.82 Aligned_cols=51 Identities=14% Similarity=0.271 Sum_probs=34.9
Q ss_pred chHHHHHHHHHHhCCcccHHHHHHHhhcccCCCCCCchHH-----HHHHHHHHHHHHHh
Q psy180 2 PDVSLAYKLHLESATMINMHDWLQSFATIVNPDGKMSDAT-----IKARFTQAVSELQF 55 (77)
Q Consensus 2 Pd~~ily~Ly~E~g~~INlyDw~~AF~~~~~~~~~~~~~~-----~~arF~rav~EL~~ 55 (77)
|..+-+|+||..-..-.||.||++-=+ +...+.|++. ++-||+|-+.-.=.
T Consensus 292 pt~s~vF~LY~Sls~G~tlk~w~~~~~---~~~~~iDeRRlI~FGl~k~~Irr~~KYPv 347 (396)
T KOG3789|consen 292 PTFSDVFQLYCSLSQGNTLKDWADREK---PQSMGIDERRLIQFGLHKRFIRRLHKYPV 347 (396)
T ss_pred ccHHHHHHHHHhccCCccHHHHHHhcc---hhhcCccHHHHhhhhhHHHHHHHHhhCcE
Confidence 678999999999988999999999222 2222334443 35777777765433
No 9
>PF14338 Mrr_N: Mrr N-terminal domain
Probab=59.25 E-value=38 Score=20.61 Aligned_cols=57 Identities=16% Similarity=0.095 Sum_probs=42.6
Q ss_pred HHHHHHhCCcccHHHHHHHhhcccCCCCCC---------chHHHHHHHHHHHHHHHhhccccCCCC
Q psy180 8 YKLHLESATMINMHDWLQSFATIVNPDGKM---------SDATIKARFTQAVSELQFLGFIKNCKQ 64 (77)
Q Consensus 8 y~Ly~E~g~~INlyDw~~AF~~~~~~~~~~---------~~~~~~arF~rav~EL~~lG~ik~s~r 64 (77)
-+...+.|......|-+++..+..+-.+++ .......|+--|++.|...|+|...+|
T Consensus 10 L~~L~~~g~~~~~~ei~~~v~~~~~ls~e~~~~~~~sg~~~~~~~~ri~Wa~~~L~~aGli~~~~r 75 (92)
T PF14338_consen 10 LEALKDLGGSASRKEIYERVAERFGLSDEERNERLPSGQGYSRFKNRIRWARSYLKKAGLIERPKR 75 (92)
T ss_pred HHHHHHcCCCcCHHHHHHHHHHHhCCCHHHHHHHcccCCcchhHHHhHHHHHHHHHHCCCccCCCC
Confidence 455677788999888888887776533321 123678999999999999999986444
No 10
>PF10668 Phage_terminase: Phage terminase small subunit; InterPro: IPR018925 This entry describes the terminase small subunit from Enterococcus phage phiFL1A, related proteins in other bacteriophage, and prophage regions of bacterial genomes. Packaging of double-stranded viral DNA concatemers requires interaction of the prohead with virus DNA. This process is mediated by a phage-encoded DNA recognition and terminase protein. The terminase enzymes described so far, which are hetero-oligomers composed of a small and a large subunit, do not have a significant level of sequence homology. The small terminase subunit is thought to form a nucleoprotein structure that helps to position the terminase large subunit at the packaging initiation site [].
Probab=55.76 E-value=15 Score=21.90 Aligned_cols=23 Identities=26% Similarity=0.382 Sum_probs=19.0
Q ss_pred chHHHHHHHHHHhCCcccHHHHH
Q psy180 2 PDVSLAYKLHLESATMINMHDWL 24 (77)
Q Consensus 2 Pd~~ily~Ly~E~g~~INlyDw~ 24 (77)
|+=-.+|.+|+|+|.-|.+-|-=
T Consensus 7 p~rdkA~e~y~~~~g~i~lkdIA 29 (60)
T PF10668_consen 7 PNRDKAFEIYKESNGKIKLKDIA 29 (60)
T ss_pred cCHHHHHHHHHHhCCCccHHHHH
Confidence 55668999999999999887753
No 11
>KOG0502|consensus
Probab=55.12 E-value=4.5 Score=30.73 Aligned_cols=19 Identities=26% Similarity=0.357 Sum_probs=16.1
Q ss_pred HHHHHHHHhCCcccHHHHH
Q psy180 6 LAYKLHLESATMINMHDWL 24 (77)
Q Consensus 6 ily~Ly~E~g~~INlyDw~ 24 (77)
.+-+|.++.+.-||+|||=
T Consensus 207 diV~lLL~r~vdVNvyDwN 225 (296)
T KOG0502|consen 207 DIVELLLTREVDVNVYDWN 225 (296)
T ss_pred HHHHHHHhcCCCcceeccC
Confidence 3457899999999999993
No 12
>COG3343 RpoE DNA-directed RNA polymerase, delta subunit [Transcription]
Probab=51.46 E-value=42 Score=24.05 Aligned_cols=47 Identities=11% Similarity=0.121 Sum_probs=36.4
Q ss_pred hHHHHHHHHHHhCCcccHHHHHHHhhcccCCCCCCchHHHHHHHHHHH
Q psy180 3 DVSLAYKLHLESATMINMHDWLQSFATIVNPDGKMSDATIKARFTQAV 50 (77)
Q Consensus 3 d~~ily~Ly~E~g~~INlyDw~~AF~~~~~~~~~~~~~~~~arF~rav 50 (77)
-+.+++.+.-+.|+.+|.+|.+..+...++-+... -+...++||.-+
T Consensus 16 ~IevA~~ile~~~~~~~F~dii~EI~~~~~~s~~e-i~~~i~~FYTdl 62 (175)
T COG3343 16 LIEVAHAILEEKKKPFNFSDIINEIQKLLGVSKEE-IRSRIGQFYTDL 62 (175)
T ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHHhCcCHHH-HHHHHHHHHHHh
Confidence 46789999999999999999999999988765532 455566666543
No 13
>PF04854 DUF624: Protein of unknown function, DUF624; InterPro: IPR006938 This family consists of uncharacterised or hypothetical bacterial proteins.
Probab=50.03 E-value=26 Score=20.49 Aligned_cols=30 Identities=13% Similarity=0.206 Sum_probs=22.3
Q ss_pred chHHHHHHHHHHh---C-CcccHHHHHHHhhccc
Q psy180 2 PDVSLAYKLHLES---A-TMINMHDWLQSFATIV 31 (77)
Q Consensus 2 Pd~~ily~Ly~E~---g-~~INlyDw~~AF~~~~ 31 (77)
|.++-+|...++. + ..-...|+|++|++..
T Consensus 23 PA~~Al~~~~~~~~~~~~~~~~~~~f~~~fk~nf 56 (77)
T PF04854_consen 23 PATAALYYVVRKWVRDEEDSYLFRDFWRAFKQNF 56 (77)
T ss_pred HHHHHHHHHHHHHHcCCccChHHHHHHHHHHHHH
Confidence 6677777776654 5 5778899999998753
No 14
>PF02319 E2F_TDP: E2F/DP family winged-helix DNA-binding domain; InterPro: IPR003316 The mammalian transcription factor E2F plays an important role in regulating the expression of genes that are required for passage through the cell cycle. Multiple E2F family members have been identified that bind to DNA as heterodimers, interacting with proteins known as DP - the dimerisation partners [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005667 transcription factor complex; PDB: 1CF7_B.
Probab=42.75 E-value=19 Score=21.38 Aligned_cols=40 Identities=18% Similarity=0.312 Sum_probs=27.9
Q ss_pred CCcccHHHHHHHhhcccCCCCCCchHHHHHHHHHHHHHHHhhccccC
Q psy180 15 ATMINMHDWLQSFATIVNPDGKMSDATIKARFTQAVSELQFLGFIKN 61 (77)
Q Consensus 15 g~~INlyDw~~AF~~~~~~~~~~~~~~~~arF~rav~EL~~lG~ik~ 61 (77)
+..||+.+--..+-.. ..+...-|+|..+.=|+-+|+|+.
T Consensus 22 ~~~i~l~~ia~~l~~~-------~~k~~~RRlYDI~NVLealgli~K 61 (71)
T PF02319_consen 22 DKSISLNEIADKLISE-------NVKTQRRRLYDIINVLEALGLIEK 61 (71)
T ss_dssp CTEEEHHHHHHHCHHH-------CCHHHCHHHHHHHHHHHHCTSEEE
T ss_pred CCcccHHHHHHHHccc-------ccccccchhhHHHHHHHHhCceee
Confidence 4666666655554221 123456799999999999999996
No 15
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=42.70 E-value=43 Score=30.15 Aligned_cols=43 Identities=19% Similarity=0.301 Sum_probs=30.9
Q ss_pred cccHHHHHHHhhcccCCCCC--CchHHHHHHHHHHHHHHHhhcccc
Q psy180 17 MINMHDWLQSFATIVNPDGK--MSDATIKARFTQAVSELQFLGFIK 60 (77)
Q Consensus 17 ~INlyDw~~AF~~~~~~~~~--~~~~~~~arF~rav~EL~~lG~ik 60 (77)
.|..-+-|+.++.+.+.... ..+...+ |+..-|.||.+||+|-
T Consensus 1040 ~i~TGEVYerYk~Lce~~Gk~iGv~plTq-RV~d~L~eL~~LGIIl 1084 (1164)
T PTZ00112 1040 IIPYKKVLNRYKVLVETSGKYIGMCSNNE-LFKIMLDKLVKMGILL 1084 (1164)
T ss_pred ceeHHHHHHHHHHHHHhhhhhcCCCCcHH-HHHHHHHHHHhcCeEE
Confidence 47776766666666653331 1256777 9999999999999985
No 16
>COG3611 DnaB Replication initiation/membrane attachment protein [DNA replication, recombination, and repair]
Probab=40.79 E-value=27 Score=28.03 Aligned_cols=59 Identities=20% Similarity=0.241 Sum_probs=41.8
Q ss_pred hHHHHHHHHHHh--CCcccHHHHHHHhhcccCCCCCC--------c-hHHHHHHHHHHHHHHHhhccccC
Q psy180 3 DVSLAYKLHLES--ATMINMHDWLQSFATIVNPDGKM--------S-DATIKARFTQAVSELQFLGFIKN 61 (77)
Q Consensus 3 d~~ily~Ly~E~--g~~INlyDw~~AF~~~~~~~~~~--------~-~~~~~arF~rav~EL~~lG~ik~ 61 (77)
|..++++||.-= -..+.+|=|+.+|..+.+.-... . .+.-.-+|.++..-|+-+|+||.
T Consensus 20 d~~~l~~lY~PliG~eAvsLY~~li~e~~~~~~~~S~~l~h~~l~gm~~i~l~~~~e~~~kLealgLlkt 89 (417)
T COG3611 20 DLEVLTQLYQPLIGTEAVSLYQWLISEVNIQNRLWSEILNHLNLLGMLNINLKTIIEAIDKLEALGLLKT 89 (417)
T ss_pred cHHHHHHHHhhhhhHHHHHHHHHHHHHHhhccchhHHHHHHHHHhcccccCHHHHHHHHHHHhhhhhHHH
Confidence 566788888765 34578999999998862221110 0 12336789999999999999996
No 17
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=38.82 E-value=55 Score=24.25 Aligned_cols=44 Identities=16% Similarity=0.389 Sum_probs=33.5
Q ss_pred CcccHHHHHHHhhcccCCCCCCchHHHHHHHHHHHHHHHhhccccC
Q psy180 16 TMINMHDWLQSFATIVNPDGKMSDATIKARFTQAVSELQFLGFIKN 61 (77)
Q Consensus 16 ~~INlyDw~~AF~~~~~~~~~~~~~~~~arF~rav~EL~~lG~ik~ 61 (77)
..++..|.+..++.....-.. ++....+|..-+.+|+.+|+|..
T Consensus 314 ~~~~~~~i~~~y~~l~~~~~~--~~~~~~~~~~~l~~L~~~glI~~ 357 (394)
T PRK00411 314 DEVTTGEVYEEYKELCEELGY--EPRTHTRFYEYINKLDMLGIINT 357 (394)
T ss_pred CcccHHHHHHHHHHHHHHcCC--CcCcHHHHHHHHHHHHhcCCeEE
Confidence 568899998888777643221 34456778999999999999985
No 18
>PF12035 DUF3521: Protein of unknown function (DUF3521); InterPro: IPR021909 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 42 to 74 amino acids in length.
Probab=37.21 E-value=26 Score=18.66 Aligned_cols=11 Identities=27% Similarity=0.640 Sum_probs=5.6
Q ss_pred HhhccccCCCC
Q psy180 54 QFLGFIKNCKQ 64 (77)
Q Consensus 54 ~~lG~ik~s~r 64 (77)
.|.|.|+++|+
T Consensus 21 ~fvgriRr~r~ 31 (35)
T PF12035_consen 21 DFVGRIRRDRR 31 (35)
T ss_pred HHhcccCCccc
Confidence 34555555443
No 19
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=36.69 E-value=1e+02 Score=18.89 Aligned_cols=49 Identities=12% Similarity=0.145 Sum_probs=39.3
Q ss_pred HHHHHHHHhCCcccHHHHHHHhhcccCCCCCCchHHHHHHHHHHHHHHHhhccccC
Q psy180 6 LAYKLHLESATMINMHDWLQSFATIVNPDGKMSDATIKARFTQAVSELQFLGFIKN 61 (77)
Q Consensus 6 ily~Ly~E~g~~INlyDw~~AF~~~~~~~~~~~~~~~~arF~rav~EL~~lG~ik~ 61 (77)
.++++..+++.-++.+|-++.-++..+ ....+--+|++..|.=.|+|+.
T Consensus 5 ~Il~~l~~~~~~~sa~ei~~~l~~~~~-------~i~~~TVYR~L~~L~~~Gli~~ 53 (116)
T cd07153 5 AILEVLLESDGHLTAEEIYERLRKKGP-------SISLATVYRTLELLEEAGLVRE 53 (116)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhcCC-------CCCHHHHHHHHHHHHhCCCEEE
Confidence 467777888889999999998876422 2336788999999999999995
No 20
>KOG2181|consensus
Probab=36.41 E-value=39 Score=26.80 Aligned_cols=42 Identities=26% Similarity=0.405 Sum_probs=27.4
Q ss_pred HHHHHhCCcccHHHHHHHhhcccCCCCCC--------c-------hHHHHHHHHHHHHH
Q psy180 9 KLHLESATMINMHDWLQSFATIVNPDGKM--------S-------DATIKARFTQAVSE 52 (77)
Q Consensus 9 ~Ly~E~g~~INlyDw~~AF~~~~~~~~~~--------~-------~~~~~arF~rav~E 52 (77)
+||.-++..=| -||+||....=+++-. + .+.+--||.|++.|
T Consensus 60 RLq~~se~sdN--~WWDaFstEFFeDDa~Lt~~fclEdgpkRYtIgRtlIPrfFrsIfe 116 (415)
T KOG2181|consen 60 RLQIFSEVSDN--QWWDAFSTEFFEDDAKLTFVFCLEDGPKRYTIGRTLIPRFFRSIFE 116 (415)
T ss_pred HHHHhcccchh--hhHHhhhhhhhcCCceEEEEEEecCCcceeeeccchhHHHHHHHHh
Confidence 35555666666 6999998765444321 1 46777888888764
No 21
>PF14178 YppF: YppF-like protein
Probab=35.08 E-value=1e+02 Score=18.49 Aligned_cols=44 Identities=18% Similarity=0.197 Sum_probs=33.2
Q ss_pred cHHHHHHHhhcccCCCCCC-------------chHHHHHHHHHHHHHHHhhccccCC
Q psy180 19 NMHDWLQSFATIVNPDGKM-------------SDATIKARFTQAVSELQFLGFIKNC 62 (77)
Q Consensus 19 NlyDw~~AF~~~~~~~~~~-------------~~~~~~arF~rav~EL~~lG~ik~s 62 (77)
||.|.-++|-+.-.=+..+ ......+.|-..|-||+-.|=++|.
T Consensus 2 ~l~eLk~~F~~~k~y~p~~~NeLLDFar~~Yi~gei~i~eYR~lvreLE~~GA~~p~ 58 (60)
T PF14178_consen 2 NLHELKQKFMQKKKYEPEDMNELLDFARKLYIQGEISINEYRNLVRELEANGAVSPD 58 (60)
T ss_pred CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCCCCC
Confidence 8899999998876533322 1345568888999999999998874
No 22
>PHA03358 Alkaline exonuclease; Provisional
Probab=35.08 E-value=24 Score=21.99 Aligned_cols=17 Identities=18% Similarity=0.272 Sum_probs=14.8
Q ss_pred hCCcccHHHHHHHhhcc
Q psy180 14 SATMINMHDWLQSFATI 30 (77)
Q Consensus 14 ~g~~INlyDw~~AF~~~ 30 (77)
.|..|||+|=|..|..-
T Consensus 19 ~G~~INl~eDFE~fS~e 35 (75)
T PHA03358 19 DGGIINLYNDYEEFSLE 35 (75)
T ss_pred CCCEechHHHHHHHhhc
Confidence 38999999999999764
No 23
>KOG0131|consensus
Probab=33.56 E-value=23 Score=25.93 Aligned_cols=22 Identities=27% Similarity=0.675 Sum_probs=18.2
Q ss_pred HHHHHHHHHhCCcccHH---HHHHH
Q psy180 5 SLAYKLHLESATMINMH---DWLQS 26 (77)
Q Consensus 5 ~ily~Ly~E~g~~INly---Dw~~A 26 (77)
++||.|+..+|..|||+ |-.+.
T Consensus 24 ~~l~EL~iqagpVv~i~iPkDrv~~ 48 (203)
T KOG0131|consen 24 ELLYELFIQAGPVVNLHIPKDRVTQ 48 (203)
T ss_pred HHHHHHHHhcCceeeeecchhhhcc
Confidence 68999999999999996 55443
No 24
>PF11426 Tn7_TnsC_Int: Tn7 transposition regulator TnsC; InterPro: IPR021542 TnsC is a molecular switch that regulates transposition and interacts with TnsA which is a component of the transposase. The two proteins interact via the residues 504-555 on TnsC. The TnsA/TnsC interaction is very important in Tn7 transposition []. ; PDB: 1T0F_C.
Probab=32.44 E-value=42 Score=19.12 Aligned_cols=21 Identities=19% Similarity=0.589 Sum_probs=14.7
Q ss_pred HHHHHHHHhCCcccHHHHHHH
Q psy180 6 LAYKLHLESATMINMHDWLQS 26 (77)
Q Consensus 6 ily~Ly~E~g~~INlyDw~~A 26 (77)
-+|.....+|-..++.||+..
T Consensus 26 ~~y~~Lk~~Glifdl~~~l~~ 46 (48)
T PF11426_consen 26 SVYEALKQNGLIFDLEDWLKQ 46 (48)
T ss_dssp -HHHHHHHTTSB--HHHHT--
T ss_pred HHHHHHHHCCeeeeHHHHHhh
Confidence 478899999999999999865
No 25
>COG0565 LasT rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=32.29 E-value=97 Score=23.14 Aligned_cols=51 Identities=14% Similarity=0.152 Sum_probs=34.1
Q ss_pred CCcccHHHHHHHhhcccCC----CCCCchHHHHHHHHHHHHHHHhhccccCCCCC
Q psy180 15 ATMINMHDWLQSFATIVNP----DGKMSDATIKARFTQAVSELQFLGFIKNCKQK 65 (77)
Q Consensus 15 g~~INlyDw~~AF~~~~~~----~~~~~~~~~~arF~rav~EL~~lG~ik~s~rk 65 (77)
-..|.+|.|++++-..-+. .......++...|-.--.-|...||.++.++|
T Consensus 148 AV~ii~YEl~~~~l~~~~~~~~~~~~at~~ele~l~~hle~~L~~~~~~~~~~~~ 202 (242)
T COG0565 148 AVQVILYELRKAELAQEGSSGIEDELATKEELELLYEHLEELLDAIGFPDPRKKK 202 (242)
T ss_pred HHHHHHHHHHHhhcccccccccccCCCCHHHHHHHHHHHHHHHHHcCCCcccchh
Confidence 3567789999876544331 11113567777777777888999999985554
No 26
>PF02791 DDT: DDT domain; InterPro: IPR004022 This domain is predicted to be a DNA binding domain. The DDT domain is named after (DNA binding homeobox and Different Transcription factors). It is found in foetal Alzheimer antigen and several hypothetical and uncharacterised proteins.
Probab=30.45 E-value=25 Score=20.21 Aligned_cols=21 Identities=10% Similarity=0.422 Sum_probs=16.8
Q ss_pred CCcccHHHHHHHhhcccCCCC
Q psy180 15 ATMINMHDWLQSFATIVNPDG 35 (77)
Q Consensus 15 g~~INlyDw~~AF~~~~~~~~ 35 (77)
|..+-+|+|..+|..++.=+.
T Consensus 5 ~~~L~v~~Fl~~F~~~L~L~~ 25 (61)
T PF02791_consen 5 GDLLMVWEFLNTFGEVLGLSP 25 (61)
T ss_pred HHHHHHHHHHHHHHHHHcCCc
Confidence 567789999999999987544
No 27
>TIGR02325 C_P_lyase_phnF phosphonates metabolism transcriptional regulator PhnF. All members of the seed alignment for this family are predicted helix-turn-helix transcriptional regulatory proteins of the broader gntR and are found associated with genes for the import and degradation of phosphonates and/or related compounds (e.g. phosphonites) with a direct C-P bond.
Probab=30.37 E-value=34 Score=23.59 Aligned_cols=35 Identities=17% Similarity=0.310 Sum_probs=28.0
Q ss_pred CchHHHHHHH-------HHHHHHHHhhccccCCCCCcceeee
Q psy180 37 MSDATIKARF-------TQAVSELQFLGFIKNCKQKIDHVSR 71 (77)
Q Consensus 37 ~~~~~~~arF-------~rav~EL~~lG~ik~s~rk~Dhv~K 71 (77)
++|+++.++| -||+.+|+--|+|...+.|+=+|.+
T Consensus 33 PsE~eLa~~~~VSR~TvR~Al~~L~~eGli~r~~G~GtfV~~ 74 (238)
T TIGR02325 33 PAEMQLAERFGVNRHTVRRAIAALVERGLLRAEQGRGTFVAA 74 (238)
T ss_pred cCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecCCEEEECC
Confidence 3577777776 5999999999999987777777753
No 28
>PF06218 NPR2: Nitrogen permease regulator 2; InterPro: IPR009348 This family of regulators are involved in post-translational control of nitrogen permease.
Probab=30.26 E-value=71 Score=25.54 Aligned_cols=31 Identities=16% Similarity=0.395 Sum_probs=27.6
Q ss_pred CchHHHHHHHHHHhCCcccHHHHHHHhhccc
Q psy180 1 MPDVSLAYKLHLESATMINMHDWLQSFATIV 31 (77)
Q Consensus 1 ~Pd~~ily~Ly~E~g~~INlyDw~~AF~~~~ 31 (77)
.|+...+|+||..-..-..|.||+......+
T Consensus 320 ~ps~~~l~~LY~sl~~G~tl~dw~~~~~~~~ 350 (428)
T PF06218_consen 320 LPSFSDLFRLYCSLQQGLTLKDWCERHSPRL 350 (428)
T ss_pred CCCHHHHHHHHHhccCCCCHHHHHHHhhHhh
Confidence 4788899999999988889999999998876
No 29
>PF13835 DUF4194: Domain of unknown function (DUF4194)
Probab=29.88 E-value=1.7e+02 Score=19.44 Aligned_cols=48 Identities=13% Similarity=0.346 Sum_probs=38.4
Q ss_pred CCcccHHHHHHHhhcccCCCCCCchHHHHHHHHHHHHHHHhhccccCCCC
Q psy180 15 ATMINMHDWLQSFATIVNPDGKMSDATIKARFTQAVSELQFLGFIKNCKQ 64 (77)
Q Consensus 15 g~~INlyDw~~AF~~~~~~~~~~~~~~~~arF~rav~EL~~lG~ik~s~r 64 (77)
...|++.|..+.+..... .. .+++..+.++-.++..|+-.|+|+....
T Consensus 98 ~~~v~~~ei~e~~~~~~~-~~-~d~~~~~~~~~~~l~~l~~~~ll~~~~~ 145 (166)
T PF13835_consen 98 RVVVTREEIVEKLESFLP-ES-RDEAPFKKRLDAALRRLKRYGLLRRLDG 145 (166)
T ss_pred cEEEeHHHHHHHHHHHcc-cc-ccccchHHHHHHHHHHHHHCCCeeccCC
Confidence 467899999999888766 22 2367788999999999999999997544
No 30
>COG2188 PhnF Transcriptional regulators [Transcription]
Probab=29.09 E-value=33 Score=24.34 Aligned_cols=35 Identities=26% Similarity=0.293 Sum_probs=27.7
Q ss_pred chHHHHHHH-------HHHHHHHHhhccccCCCCCcceeeee
Q psy180 38 SDATIKARF-------TQAVSELQFLGFIKNCKQKIDHVSRL 72 (77)
Q Consensus 38 ~~~~~~arF-------~rav~EL~~lG~ik~s~rk~Dhv~K~ 72 (77)
+|.++-.+| -||+.+|+-.|+|...+.++=+|.+-
T Consensus 33 sE~eLa~~f~VSR~TvRkAL~~L~~eGli~r~~G~GtfV~~~ 74 (236)
T COG2188 33 SERELAEQFGVSRMTVRKALDELVEEGLIVRRQGKGTFVASP 74 (236)
T ss_pred CHHHHHHHHCCcHHHHHHHHHHHHHCCcEEEEecCeeEEcCc
Confidence 466666665 59999999999999877888777653
No 31
>cd04236 AAK_NAGS-Urea AAK_NAGS-Urea: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the urea cycle found in animals. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate; NAG is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Ureogenic NAGS activity is dependent on the concentration of glutamate (substrate) and arginine (activator). Domain architecture of ureogenic NAGS consists of an N-terminal NAG kinase-like (ArgB) domain (this CD) and a C-terminal DUF619 domain. Members of this CD belong to the protein superfamily, the Amino Acid Kinase Family (AAKF).
Probab=28.89 E-value=1.2e+02 Score=22.64 Aligned_cols=43 Identities=14% Similarity=0.188 Sum_probs=32.3
Q ss_pred CcccHHHHHHHhhcccCCCCCC-----------chHHHHHHHHHHHHHHHhhcc
Q psy180 16 TMINMHDWLQSFATIVNPDGKM-----------SDATIKARFTQAVSELQFLGF 58 (77)
Q Consensus 16 ~~INlyDw~~AF~~~~~~~~~~-----------~~~~~~arF~rav~EL~~lG~ 58 (77)
..=-+..|+.-|.++-+++... .+.+....|.+.++-|+.+|+
T Consensus 15 ~~~e~~~~l~~f~~~~~~~~~~f~VIK~GG~~~~~~~~~~~l~~dla~L~~lGl 68 (271)
T cd04236 15 DPREARYWLTQFQIAMPNDWPAFAVLEVDHSVFRSLEMVQSLSFGLAFLQRMDM 68 (271)
T ss_pred CHHHHHHHHHHhhccCCCCCCCEEEEEEChhhhcCchhHHHHHHHHHHHHHCCC
Confidence 4445788999999886544432 245677889999999999997
No 32
>COG1933 Archaeal DNA polymerase II, large subunit [DNA replication, recombination, and repair]
Probab=27.92 E-value=32 Score=26.00 Aligned_cols=37 Identities=19% Similarity=0.170 Sum_probs=21.3
Q ss_pred ccHHHHHHHhhcccCCCCCCchHHHHHHHHHHHHHHH
Q psy180 18 INMHDWLQSFATIVNPDGKMSDATIKARFTQAVSELQ 54 (77)
Q Consensus 18 INlyDw~~AF~~~~~~~~~~~~~~~~arF~rav~EL~ 54 (77)
|+.-+--.+.+....-.+..+.+.-+|+|+|||.|-.
T Consensus 106 I~~g~~~~~yktl~~m~ek~~~ql~La~~iRavd~~d 142 (253)
T COG1933 106 IALGPKMSLYKQLGDMEEKVKRQLDLARRIRAVDEHD 142 (253)
T ss_pred hhccchHHHHHHHhhHHHHHHHHhhHHHHHHHHHhHH
Confidence 4444444444443333332235677999999999864
No 33
>smart00571 DDT domain in different transcription and chromosome remodeling factors.
Probab=27.54 E-value=56 Score=18.91 Aligned_cols=34 Identities=15% Similarity=0.286 Sum_probs=21.6
Q ss_pred CCcccHHHHHHHhhcccCCCCCCchHHHHHHHHHHHH
Q psy180 15 ATMINMHDWLQSFATIVNPDGKMSDATIKARFTQAVS 51 (77)
Q Consensus 15 g~~INlyDw~~AF~~~~~~~~~~~~~~~~arF~rav~ 51 (77)
|+..-||+|..+|..++.-+.-. . +..-|++|+.
T Consensus 5 ~d~l~V~eFl~~F~~~L~L~~f~-~--~l~~f~~Al~ 38 (63)
T smart00571 5 GDLLMVYEFLRSFGKVLGLSPFR-A--TLEDFIAALK 38 (63)
T ss_pred HHHHHHHHHHHHHHHHhCCCcch-h--hHHHHHHHHh
Confidence 56677888999998888543321 1 4555666554
No 34
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=27.51 E-value=61 Score=13.50 Aligned_cols=25 Identities=12% Similarity=0.264 Sum_probs=15.4
Q ss_pred HHHHHHHHHh-CCcccHHHHHHHhhc
Q psy180 5 SLAYKLHLES-ATMINMHDWLQSFAT 29 (77)
Q Consensus 5 ~ily~Ly~E~-g~~INlyDw~~AF~~ 29 (77)
-.+|+.+-.. +..|+..+|...+.+
T Consensus 3 ~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 3 KEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 3456666433 357888888776653
No 35
>PF03732 Retrotrans_gag: Retrotransposon gag protein ; InterPro: IPR005162 Transposable elements (TEs) promote various chromosomal rearrangements more efficiently, and often more specifically, than other cellular processes. Retrotransposons are structurally similar to retroviruses and are bounded by long terminal repeats. This entry represents eukaryotic Gag or capsid-related retrotranspon-related proteins. There is a central motif QGXXEXXXXXFXXLXXH that is common to Retroviridae gag-proteins, but is poorly conserved.
Probab=27.18 E-value=66 Score=18.35 Aligned_cols=31 Identities=13% Similarity=0.434 Sum_probs=15.1
Q ss_pred HHHHHHHhhcccCCCCC-CchHHHHHHHHHHH
Q psy180 20 MHDWLQSFATIVNPDGK-MSDATIKARFTQAV 50 (77)
Q Consensus 20 lyDw~~AF~~~~~~~~~-~~~~~~~arF~rav 50 (77)
|.|+.+.|.+....-.. .++.....+|++++
T Consensus 63 v~~y~~rf~~l~~~~~~~~~e~~~v~~f~~GL 94 (96)
T PF03732_consen 63 VREYVNRFRELARRAPPPMDEEMLVERFIRGL 94 (96)
T ss_pred HHHHHHHHHHHHHHCCCCcCHHHHHHHHHHCC
Confidence 44555555444433221 23555566666554
No 36
>TIGR01610 phage_O_Nterm phage replication protein O, N-terminal domain. This model represents the N-terminal region of the phage lambda replication protein O and homologous regions of other phage proteins.
Probab=27.13 E-value=48 Score=20.47 Aligned_cols=20 Identities=15% Similarity=0.092 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHhhccccCCC
Q psy180 44 ARFTQAVSELQFLGFIKNCK 63 (77)
Q Consensus 44 arF~rav~EL~~lG~ik~s~ 63 (77)
.-..|++.+|+-.|+|+..+
T Consensus 62 ~tVsr~L~~Le~~GlI~r~~ 81 (95)
T TIGR01610 62 THVSDAIKSLARRRIIFRQG 81 (95)
T ss_pred HHHHHHHHHHHHCCCeeeec
Confidence 45789999999999999633
No 37
>PRK11402 DNA-binding transcriptional regulator FrlR; Provisional
Probab=25.84 E-value=48 Score=23.18 Aligned_cols=34 Identities=18% Similarity=0.255 Sum_probs=27.7
Q ss_pred CchHHHHHHH-------HHHHHHHHhhccccCCCCCcceee
Q psy180 37 MSDATIKARF-------TQAVSELQFLGFIKNCKQKIDHVS 70 (77)
Q Consensus 37 ~~~~~~~arF-------~rav~EL~~lG~ik~s~rk~Dhv~ 70 (77)
+.|+++-+.| -||+.+|+--|+|...++|+=+|.
T Consensus 34 PsE~eLa~~~~VSR~TvR~Al~~L~~eGli~r~~G~GTfV~ 74 (241)
T PRK11402 34 PTENELCTQYNVSRITIRKAISDLVADGVLIRWQGKGTFVQ 74 (241)
T ss_pred cCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecCceeEEC
Confidence 4577777776 599999999999998777777774
No 38
>PF11154 DUF2934: Protein of unknown function (DUF2934); InterPro: IPR021327 This bacterial family of proteins has no known function.
Probab=25.61 E-value=1.1e+02 Score=16.32 Aligned_cols=26 Identities=27% Similarity=0.427 Sum_probs=19.5
Q ss_pred HHHHHHHHHhCCc--ccHHHHHHHhhcc
Q psy180 5 SLAYKLHLESATM--INMHDWLQSFATI 30 (77)
Q Consensus 5 ~ily~Ly~E~g~~--INlyDw~~AF~~~ 30 (77)
..+|.|+.+.|.. =...||++|=..+
T Consensus 10 ~rAY~lwe~~G~p~G~~~~~W~~AE~el 37 (40)
T PF11154_consen 10 ERAYELWEERGRPEGRDEEDWLEAEREL 37 (40)
T ss_pred HHHHHHHHHcCCCCCCcHHHHHHHHHHH
Confidence 4689999999864 4688998885443
No 39
>PF12626 PolyA_pol_arg_C: Polymerase A arginine-rich C-terminus; PDB: 3AQN_A 3AQK_A 3AQM_B 3AQL_B.
Probab=24.12 E-value=41 Score=22.35 Aligned_cols=16 Identities=13% Similarity=0.545 Sum_probs=13.2
Q ss_pred CCcccHHHHHHHhhcc
Q psy180 15 ATMINMHDWLQSFATI 30 (77)
Q Consensus 15 g~~INlyDw~~AF~~~ 30 (77)
+....|.+||+.|...
T Consensus 78 e~~~~l~~WW~~fq~~ 93 (124)
T PF12626_consen 78 EELSELAEWWTEFQEA 93 (124)
T ss_dssp HHHHHHHHHHHHHTTS
T ss_pred CCcHHHHHHHHHHHhC
Confidence 5667899999999864
No 40
>TIGR02404 trehalos_R_Bsub trehalose operon repressor, B. subtilis-type. This family consists of repressors of the GntR family typically associated with trehalose utilization operons. Trehalose is imported as trehalose-6-phosphate and then hydrolyzed by alpha,alpha-phosphotrehalase to glucose and glucose-6-P. This family includes repressors mostly from Gram-positive lineages and does not include the TreR from E. coli.
Probab=23.47 E-value=61 Score=22.47 Aligned_cols=35 Identities=20% Similarity=0.244 Sum_probs=28.3
Q ss_pred CCchHHHHHHH-------HHHHHHHHhhccccCCCCCcceee
Q psy180 36 KMSDATIKARF-------TQAVSELQFLGFIKNCKQKIDHVS 70 (77)
Q Consensus 36 ~~~~~~~~arF-------~rav~EL~~lG~ik~s~rk~Dhv~ 70 (77)
-++|.++-++| -||+.+|.--|+|...+.|+=+|.
T Consensus 24 LPsE~eLa~~~gVSR~TVR~Al~~L~~eGli~r~~G~GTfV~ 65 (233)
T TIGR02404 24 LPSEHELMDQYGASRETVRKALNLLTEAGYIQKIQGKGSIVL 65 (233)
T ss_pred CcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEeCCceEEEe
Confidence 34577777776 599999999999998777887884
No 41
>PF03288 Pox_D5: Poxvirus D5 protein-like; InterPro: IPR004968 This domain is found at the C terminus of phage P4 alpha protein and related proteins. Phage P4 DNA replication depends on the product of the alpha gene, which has origin recognition ability, DNA helicase activity, and DNA primase activity. The structure of the protein can be summarised as follows: The N terminus provides the primase activity, the central region is the helicase/nucleoside triphosphatase domain and the ori DNA recognition resides in the C-terminal 1/3 of the protein []. The domain is also found at the C terminus of a number of proteins from orthopox viruses including vaccinia virus D5. D5 encodes a 90kDa protein that is transiently expressed at early times after infection. It has an nucleoside triphosphatase activity which is independent of common nucleic acid cofactors and it can hydrolyse all the common ribo- and deoxyribonucleoside triphosphates to diphosphates in the presence of a divalent cation [].; PDB: 1KA8_E.
Probab=22.49 E-value=1.1e+02 Score=18.01 Aligned_cols=38 Identities=16% Similarity=0.159 Sum_probs=19.6
Q ss_pred HHHHHHHhhcccCCCCCCchHHHHHHHHHHHHHHHhhccccC
Q psy180 20 MHDWLQSFATIVNPDGKMSDATIKARFTQAVSELQFLGFIKN 61 (77)
Q Consensus 20 lyDw~~AF~~~~~~~~~~~~~~~~arF~rav~EL~~lG~ik~ 61 (77)
||+-|.+||+.-+... ...+..|.+.+...--.|+.+.
T Consensus 27 lY~~Y~~wc~~ng~~~----~ls~~~F~~~L~~~~~~~~~~~ 64 (86)
T PF03288_consen 27 LYDAYKEWCEENGYKP----PLSKRKFGKELKQYFPEGFEKK 64 (86)
T ss_dssp HHHHHHHHHHHTT-S--------HHHHHHHHHHHHHH---EE
T ss_pred HHHHHHHHHHHhCCCc----ccCHHHHHHHHHHHhhhhcEEC
Confidence 5666666666543322 2667778887777655578775
No 42
>PHA03149 hypothetical protein; Provisional
Probab=22.37 E-value=35 Score=20.85 Aligned_cols=17 Identities=18% Similarity=0.349 Sum_probs=14.3
Q ss_pred hCCcccHHHHHHHhhcc
Q psy180 14 SATMINMHDWLQSFATI 30 (77)
Q Consensus 14 ~g~~INlyDw~~AF~~~ 30 (77)
.|..|||+|=|..|.+.
T Consensus 18 ~G~~Inv~~DFE~fsE~ 34 (66)
T PHA03149 18 EGKVINLPDDFEELSET 34 (66)
T ss_pred CCcEecchhhhhhhCcc
Confidence 38999999999999553
No 43
>PRK14999 histidine utilization repressor; Provisional
Probab=22.12 E-value=57 Score=22.83 Aligned_cols=34 Identities=24% Similarity=0.296 Sum_probs=26.9
Q ss_pred CchHHHHHHH-------HHHHHHHHhhccccCCCCCcceee
Q psy180 37 MSDATIKARF-------TQAVSELQFLGFIKNCKQKIDHVS 70 (77)
Q Consensus 37 ~~~~~~~arF-------~rav~EL~~lG~ik~s~rk~Dhv~ 70 (77)
+.|+++-.+| -||+.+|+--|+|...+.|+=+|.
T Consensus 37 PsE~eLa~~~gVSR~TVR~Al~~L~~eGli~r~~GkGTfV~ 77 (241)
T PRK14999 37 PSEAELVAQYGFSRMTINRALRELTDEGWLVRLQGVGTFVA 77 (241)
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecCcEEEEC
Confidence 3577776666 599999999999997777777774
No 44
>PF06395 CDC24: CDC24 Calponin; InterPro: IPR010481 This is a calponin homology domain.
Probab=22.05 E-value=45 Score=21.27 Aligned_cols=48 Identities=19% Similarity=0.155 Sum_probs=24.0
Q ss_pred HHHHHHHHHHhCCcccHHHHHHHhhcccC--CCCCC---chHHHHHHHHHHHHH
Q psy180 4 VSLAYKLHLESATMINMHDWLQSFATIVN--PDGKM---SDATIKARFTQAVSE 52 (77)
Q Consensus 4 ~~ily~Ly~E~g~~INlyDw~~AF~~~~~--~~~~~---~~~~~~arF~rav~E 52 (77)
++.|.+++|.--.+.=||+=.+--. -++ +.+.. .-|.+-.+|++|+-.
T Consensus 3 Vt~LW~~fr~G~PLc~lfNal~p~~-~L~v~~~~~~~~k~~K~ai~~Fi~ack~ 55 (89)
T PF06395_consen 3 VTQLWKLFRQGYPLCVLFNALQPEE-PLPVDPVSSDDLKVCKKAIYKFIQACKQ 55 (89)
T ss_pred HHHHHHHHhCcCcHHHHHHccCCcc-CCCCCCCCcchHHHHHHHHHHHHHHHHH
Confidence 4556666665555554444333211 111 11111 146778999999943
No 45
>PF00392 GntR: Bacterial regulatory proteins, gntR family; InterPro: IPR000524 Many bacterial transcription regulation proteins bind DNA through a helix-turn-helix (HTH) motif, which can be classified into subfamilies on the basis of sequence similarities. The HTH GntR family has many members distributed among diverse bacterial groups that regulate various biological processes. It was named GntR after the Bacillus subtilis repressor of the gluconate operon []. Family members include GntR, HutC, KorA, NtaR, FadR, ExuR, FarR, DgoR and PhnF. The crystal structure of the FadR protein has been determined []. In general, these proteins contain a DNA-binding HTH domain at the N terminus, and an effector-binding or oligomerisation domain at the C terminus (IPR011711 from INTERPRO). The DNA-binding domain is well conserved in structure for the whole of the GntR family, consisting of a 3-helical bundle core with a small beta-sheet (wing); the GntR winged helix structure is similar to that found in several other transcriptional regulator families. The regions outside the DNA-binding domain are more variable and are consequently used to define GntR subfamilies []. This entry represents the N-terminal DNA-binding domain of the GntR family.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1HW1_B 1H9T_A 1HW2_A 1H9G_A 1E2X_A 3IHU_A 3C7J_A 2RA5_A 3BY6_C 3IC7_A ....
Probab=21.80 E-value=68 Score=17.98 Aligned_cols=23 Identities=17% Similarity=0.226 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHhhccccCCCCCc
Q psy180 44 ARFTQAVSELQFLGFIKNCKQKI 66 (77)
Q Consensus 44 arF~rav~EL~~lG~ik~s~rk~ 66 (77)
.---+|+..|+-.|+|....++.
T Consensus 39 ~tvr~al~~L~~~g~i~~~~~~G 61 (64)
T PF00392_consen 39 TTVREALRRLEAEGLIERRPGRG 61 (64)
T ss_dssp HHHHHHHHHHHHTTSEEEETTTE
T ss_pred cHHHHHHHHHHHCCcEEEECCce
Confidence 33468999999999998644443
No 46
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=20.94 E-value=2.6e+02 Score=18.51 Aligned_cols=49 Identities=12% Similarity=0.129 Sum_probs=39.5
Q ss_pred HHHHHHHHhCCcccHHHHHHHhhcccCCCCCCchHHHHHHHHHHHHHHHhhccccC
Q psy180 6 LAYKLHLESATMINMHDWLQSFATIVNPDGKMSDATIKARFTQAVSELQFLGFIKN 61 (77)
Q Consensus 6 ily~Ly~E~g~~INlyDw~~AF~~~~~~~~~~~~~~~~arF~rav~EL~~lG~ik~ 61 (77)
.+.++..+++.-++.+|-|....+.-++ ...|-=||++.-|.=.|+|+.
T Consensus 25 ~vl~~L~~~~~~~sAeei~~~l~~~~p~-------islaTVYr~L~~l~e~Glv~~ 73 (145)
T COG0735 25 AVLELLLEADGHLSAEELYEELREEGPG-------ISLATVYRTLKLLEEAGLVHR 73 (145)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHhCCC-------CCHhHHHHHHHHHHHCCCEEE
Confidence 4667888887779999999988875333 237889999999999999995
No 47
>KOG0589|consensus
Probab=20.85 E-value=99 Score=24.80 Aligned_cols=20 Identities=20% Similarity=0.361 Sum_probs=18.2
Q ss_pred chHHHHHHHHHHHHHHHhhc
Q psy180 38 SDATIKARFTQAVSELQFLG 57 (77)
Q Consensus 38 ~~~~~~arF~rav~EL~~lG 57 (77)
+|+.++.||+|++..+++|=
T Consensus 104 ~E~~i~~~~~Q~~~av~ylH 123 (426)
T KOG0589|consen 104 PEERILKWFVQILLAVNYLH 123 (426)
T ss_pred cHHHHHHHHHHHHHHHHHHH
Confidence 38899999999999999985
No 48
>PRK10079 phosphonate metabolism transcriptional regulator PhnF; Provisional
Probab=20.79 E-value=73 Score=22.29 Aligned_cols=35 Identities=17% Similarity=0.220 Sum_probs=27.8
Q ss_pred CCchHHHHHHH-------HHHHHHHHhhccccCCCCCcceee
Q psy180 36 KMSDATIKARF-------TQAVSELQFLGFIKNCKQKIDHVS 70 (77)
Q Consensus 36 ~~~~~~~~arF-------~rav~EL~~lG~ik~s~rk~Dhv~ 70 (77)
-++|.++...| -||+.+|.--|+|...+.|+=+|.
T Consensus 35 LPsE~eLa~~~~VSR~TVR~Al~~L~~eGli~r~~G~GtfV~ 76 (241)
T PRK10079 35 LPAEQQLAARYEVNRHTLRRAIDQLVEKGWVQRRQGVGVLVL 76 (241)
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecCCEEEEe
Confidence 34577777666 599999999999998777877774
No 49
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis]
Probab=20.65 E-value=1.1e+02 Score=25.32 Aligned_cols=29 Identities=10% Similarity=0.186 Sum_probs=23.9
Q ss_pred HHHHHHHHHhCCcccHHHHHHHhhcccCCCC
Q psy180 5 SLAYKLHLESATMINMHDWLQSFATIVNPDG 35 (77)
Q Consensus 5 ~ily~Ly~E~g~~INlyDw~~AF~~~~~~~~ 35 (77)
..+|+..++.| |+--+||++|+.++-+.+
T Consensus 468 ~~vy~~a~~~~--~~~~~~F~~~Y~vliGk~ 496 (521)
T COG1384 468 NEVYEVAKKKG--ILPRAFFQALYRVLIGKE 496 (521)
T ss_pred HHHHHHHHhcC--CCHHHHHHHHHHHHhCCC
Confidence 35788888888 888899999999986554
No 50
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=20.57 E-value=1.9e+02 Score=18.68 Aligned_cols=45 Identities=9% Similarity=0.154 Sum_probs=31.5
Q ss_pred hHHHHHHHHHHhCCcccHHHHHHHhhcccCCCCCCchHHHHHHHHHH
Q psy180 3 DVSLAYKLHLESATMINMHDWLQSFATIVNPDGKMSDATIKARFTQA 49 (77)
Q Consensus 3 d~~ily~Ly~E~g~~INlyDw~~AF~~~~~~~~~~~~~~~~arF~ra 49 (77)
+-..+|+.....|--.++..||.+++..++..++ -+.+.+-|.+|
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~--~~~A~~I~~~G 125 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGN--FKKADEIYQLG 125 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT---HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCC--HHHHHHHHHhh
Confidence 3456788888889999999999999998876552 23444444433
No 51
>PF13730 HTH_36: Helix-turn-helix domain
Probab=20.29 E-value=81 Score=16.88 Aligned_cols=17 Identities=29% Similarity=0.491 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHhhccc
Q psy180 43 KARFTQAVSELQFLGFI 59 (77)
Q Consensus 43 ~arF~rav~EL~~lG~i 59 (77)
.....+++.+|+-.|+|
T Consensus 39 ~~Tv~~~i~~L~~~G~I 55 (55)
T PF13730_consen 39 RRTVQRAIKELEEKGLI 55 (55)
T ss_pred HHHHHHHHHHHHHCcCC
Confidence 35678999999999986
No 52
>PF01388 ARID: ARID/BRIGHT DNA binding domain; InterPro: IPR001606 Members of the recently discovered ARID (AT-rich interaction domain; also known as BRIGHT domain)) family of DNA-binding proteins are found in fungi and invertebrate and vertebrate metazoans. ARID-encoding genes are involved in a variety of biological processes including embryonic development, cell lineage gene regulation and cell cycle control. Although the specific roles of this domain and of ARID-containing proteins in transcriptional regulation are yet to be elucidated, they include both positive and negative transcriptional regulation and a likely involvement in the modification of chromatin structure []. The basic structure of the ARID domain domain appears to be a series of six alpha-helices separated by beta-strands, loops, or turns, but the structured region may extend to an additional helix at either or both ends of the basic six. Based on primary sequence homology, they can be partitioned into three structural classes: Minimal ARID proteins that consist of a core domain formed by six alpha helices; ARID proteins that supplement the core domain with an N-terminal alpha-helix; and Extended-ARID proteins, which contain the core domain and additional alpha-helices at their N- and C-termini. The human SWI-SNF complex protein p270 is an ARID family member with non-sequence-specific DNA binding activity. The ARID consensus and other structural features are common to both p270 and yeast SWI1, suggesting that p270 is a human counterpart of SWI1 []. The approximately 100-residue ARID sequence is present in a series of proteins strongly implicated in the regulation of cell growth, development, and tissue-specific gene expression. Although about a dozen ARID proteins can be identified from database searches, to date, only Bright (a regulator of B-cell-specific gene expression), dead ringer (a Drosophila melanogaster gene product required for normal development), and MRF-2 (which represses expression from the Cytomegalovirus enhancer) have been analyzed directly in regard to their DNA binding properties. Each binds preferentially to AT-rich sites. In contrast, p270 shows no sequence preference in its DNA binding activity, thereby demonstrating that AT-rich binding is not an intrinsic property of ARID domains and that ARID family proteins may be involved in a wider range of DNA interactions [].; GO: 0003677 DNA binding, 0005622 intracellular; PDB: 1C20_A 1KQQ_A 2JRZ_A 2LM1_A 2YQE_A 2JXJ_A 2EH9_A 2CXY_A 2LI6_A 1KN5_A ....
Probab=20.08 E-value=72 Score=19.06 Aligned_cols=15 Identities=0% Similarity=0.142 Sum_probs=10.0
Q ss_pred hCCcccHHHHHHHhh
Q psy180 14 SATMINMHDWLQSFA 28 (77)
Q Consensus 14 ~g~~INlyDw~~AF~ 28 (77)
.|+.||||..|.+=.
T Consensus 32 ~g~~vDL~~Ly~~V~ 46 (92)
T PF01388_consen 32 GGKPVDLYKLYKAVM 46 (92)
T ss_dssp TTSE-SHHHHHHHHH
T ss_pred CCEeCcHHHHHHHHH
Confidence 367788888887654
No 53
>PRK09764 DNA-binding transcriptional repressor MngR; Provisional
Probab=20.07 E-value=72 Score=22.37 Aligned_cols=34 Identities=15% Similarity=0.219 Sum_probs=26.8
Q ss_pred CchHHHHHHH-------HHHHHHHHhhccccCCCCCcceee
Q psy180 37 MSDATIKARF-------TQAVSELQFLGFIKNCKQKIDHVS 70 (77)
Q Consensus 37 ~~~~~~~arF-------~rav~EL~~lG~ik~s~rk~Dhv~ 70 (77)
++|+++..+| -+|+.+|+--|+|...+.|+=+|.
T Consensus 30 PsE~eL~~~~~VSR~TvR~Al~~L~~eGli~r~~G~GtfV~ 70 (240)
T PRK09764 30 PTESALQTEFGVSRVTVRQALRQLVEQQILESIQGSGTYVK 70 (240)
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecCceeEEc
Confidence 3577777666 599999999999997677776774
Done!