Query psy180
Match_columns 77
No_of_seqs 100 out of 156
Neff 5.2
Searched_HMMs 29240
Date Fri Aug 16 19:43:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy180.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/180hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2krc_A DNA-directed RNA polyme 83.2 3.1 0.00011 26.0 5.3 49 1-50 13-61 (99)
2 2dii_A TFIIH basal transcripti 64.8 10 0.00035 21.9 3.9 29 6-34 28-58 (61)
3 3mwm_A ZUR, putative metal upt 56.9 29 0.00099 21.7 5.3 49 6-61 18-66 (139)
4 2fe3_A Peroxide operon regulat 56.2 34 0.0012 21.4 6.1 49 6-61 26-74 (145)
5 1mzb_A Ferric uptake regulatio 51.9 39 0.0013 20.8 5.4 49 6-61 22-71 (136)
6 2o03_A Probable zinc uptake re 50.8 40 0.0014 20.6 5.6 49 6-61 15-63 (131)
7 2xig_A Ferric uptake regulatio 49.5 47 0.0016 20.9 5.8 49 6-61 31-79 (150)
8 2w57_A Ferric uptake regulatio 47.2 46 0.0016 21.0 5.1 49 6-61 21-70 (150)
9 1cf7_B Protein (transcription 45.3 32 0.0011 21.3 4.0 33 38-76 56-88 (95)
10 3eyy_A Putative iron uptake re 40.9 65 0.0022 20.1 6.0 48 6-61 23-70 (145)
11 4ets_A Ferric uptake regulatio 40.8 66 0.0022 20.6 5.2 49 6-61 37-87 (162)
12 1fnn_A CDC6P, cell division co 36.5 27 0.00092 23.9 2.9 47 13-61 304-350 (389)
13 1cf7_A Protein (transcription 32.9 23 0.00079 20.7 1.8 54 7-76 19-73 (76)
14 1t0f_C Protein E, transposon T 32.4 13 0.00044 20.9 0.6 21 7-27 33-53 (54)
15 1irz_A ARR10-B; helix-turn-hel 32.1 31 0.0011 19.8 2.2 16 38-53 10-25 (64)
16 2fu4_A Ferric uptake regulatio 26.9 83 0.0029 17.2 5.3 48 7-61 22-70 (83)
17 4ham_A LMO2241 protein; struct 26.4 29 0.00098 21.3 1.5 24 47-70 56-79 (134)
18 3kw6_A 26S protease regulatory 24.3 59 0.002 17.9 2.5 26 9-34 52-77 (78)
19 2zvv_Y Cyclin-dependent kinase 23.2 30 0.001 16.7 0.9 15 16-30 5-19 (26)
20 2avu_E Flagellar transcription 21.4 94 0.0032 21.4 3.5 45 5-49 74-129 (192)
21 1v66_A Protein inhibitor of ac 20.9 13 0.00046 21.8 -0.8 23 50-72 16-41 (65)
22 2yma_A YOS9P, protein OS-9 hom 20.9 1.2E+02 0.0041 20.5 3.8 37 39-75 51-88 (161)
No 1
>2krc_A DNA-directed RNA polymerase subunit delta; delta subunit, GRAM-positive bacteria, nucleotidyltransferase, transcription, transferase; NMR {Bacillus subtilis}
Probab=83.24 E-value=3.1 Score=25.98 Aligned_cols=49 Identities=18% Similarity=0.215 Sum_probs=38.3
Q ss_pred CchHHHHHHHHHHhCCcccHHHHHHHhhcccCCCCCCchHHHHHHHHHHH
Q psy180 1 MPDVSLAYKLHLESATMINMHDWLQSFATIVNPDGKMSDATIKARFTQAV 50 (77)
Q Consensus 1 ~Pd~~ily~Ly~E~g~~INlyDw~~AF~~~~~~~~~~~~~~~~arF~rav 50 (77)
++.+-++|.+..+.|..++.+|.+..-.+..+-..++ -+...|.|+.-+
T Consensus 13 ~SmiDvAy~iL~~~~~~~~F~dL~~eV~~~~~~s~ee-~~~~iaqfYTdL 61 (99)
T 2krc_A 13 MALVEIAHELFEEHKKPVPFQELLNEIASLLGVKKEE-LGDRIAQFYTDL 61 (99)
T ss_dssp SCHHHHHHHHHHHHCSCEEHHHHHHHHHHHHTSCGGG-GTHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHcCCcccHHHHHHHHHHHhCCCHHH-HHHHHHHHHHHH
Confidence 4678899999999999999999999999998654432 234457787644
No 2
>2dii_A TFIIH basal transcription factor complex P62 subunit; BTF2-P62, general transcription factor IIH polypeptide 1, nuclear protein; NMR {Homo sapiens} SCOP: a.240.1.1
Probab=64.84 E-value=10 Score=21.94 Aligned_cols=29 Identities=7% Similarity=0.194 Sum_probs=23.6
Q ss_pred HHHHHHHHh--CCcccHHHHHHHhhcccCCC
Q psy180 6 LAYKLHLES--ATMINMHDWLQSFATIVNPD 34 (77)
Q Consensus 6 ily~Ly~E~--g~~INlyDw~~AF~~~~~~~ 34 (77)
.|++||++- +..|.-.|||...+..+..+
T Consensus 28 ~L~qLyk~LV~s~vIse~eFW~~r~~ll~~~ 58 (61)
T 2dii_A 28 VLFQLYKDLVVSQVISAEEFWANRLNVNSGP 58 (61)
T ss_dssp HHHHHHHHHHTTTSSCHHHHHHHHCSSCCCC
T ss_pred HHHHHHHHHHHhCcCCHHHHHHHHHHhhcCC
Confidence 467888887 88999999999999866543
No 3
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=56.86 E-value=29 Score=21.67 Aligned_cols=49 Identities=6% Similarity=-0.055 Sum_probs=39.8
Q ss_pred HHHHHHHHhCCcccHHHHHHHhhcccCCCCCCchHHHHHHHHHHHHHHHhhccccC
Q psy180 6 LAYKLHLESATMINMHDWLQSFATIVNPDGKMSDATIKARFTQAVSELQFLGFIKN 61 (77)
Q Consensus 6 ily~Ly~E~g~~INlyDw~~AF~~~~~~~~~~~~~~~~arF~rav~EL~~lG~ik~ 61 (77)
.++++..+++.-++.+|.|...++..+. ...+--||.+..|.=.|+|+.
T Consensus 18 ~Il~~L~~~~~h~sa~eI~~~l~~~~~~-------is~aTVYR~L~~L~e~Glv~~ 66 (139)
T 3mwm_A 18 AVSAALQEVEEFRSAQELHDMLKHKGDA-------VGLTTVYRTLQSLADAGEVDV 66 (139)
T ss_dssp HHHHHHTTCSSCEEHHHHHHHHHHTTCC-------CCHHHHHHHHHHHHHTTSSEE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCC-------CCHHHHHHHHHHHHHCCCEEE
Confidence 3567777888899999999999865332 237889999999999999985
No 4
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=56.18 E-value=34 Score=21.37 Aligned_cols=49 Identities=10% Similarity=0.075 Sum_probs=39.3
Q ss_pred HHHHHHHHhCCcccHHHHHHHhhcccCCCCCCchHHHHHHHHHHHHHHHhhccccC
Q psy180 6 LAYKLHLESATMINMHDWLQSFATIVNPDGKMSDATIKARFTQAVSELQFLGFIKN 61 (77)
Q Consensus 6 ily~Ly~E~g~~INlyDw~~AF~~~~~~~~~~~~~~~~arF~rav~EL~~lG~ik~ 61 (77)
.++++..+++.-++.+|.+...++..+. ..++--||.+..|.=.|+|+.
T Consensus 26 ~Il~~L~~~~~~~sa~ei~~~l~~~~~~-------is~aTVYR~L~~L~e~Glv~~ 74 (145)
T 2fe3_A 26 AILEYLVNSMAHPTADDIYKALEGKFPN-------MSVATVYNNLRVFRESGLVKE 74 (145)
T ss_dssp HHHHHHHHCSSCCCHHHHHHHHGGGCTT-------CCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCC-------CChhhHHHHHHHHHHCCCEEE
Confidence 3566667788889999999999875332 337889999999999999984
No 5
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=51.85 E-value=39 Score=20.79 Aligned_cols=49 Identities=6% Similarity=0.079 Sum_probs=38.1
Q ss_pred HHHHHHHHhC-CcccHHHHHHHhhcccCCCCCCchHHHHHHHHHHHHHHHhhccccC
Q psy180 6 LAYKLHLESA-TMINMHDWLQSFATIVNPDGKMSDATIKARFTQAVSELQFLGFIKN 61 (77)
Q Consensus 6 ily~Ly~E~g-~~INlyDw~~AF~~~~~~~~~~~~~~~~arF~rav~EL~~lG~ik~ 61 (77)
.++++..+++ .-++.+|.++..++..+. ..++--||.+..|.=.|+|+.
T Consensus 22 ~Il~~L~~~~~~~~sa~ei~~~l~~~~~~-------is~aTVYR~L~~L~e~Glv~~ 71 (136)
T 1mzb_A 22 KILQMLDSAEQRHMSAEDVYKALMEAGED-------VGLATVYRVLTQFEAAGLVVR 71 (136)
T ss_dssp HHHHHHHCC-CCSBCHHHHHHHHHHTTCC-------CCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHhhCCC-------CCHHHHHHHHHHHHHCCcEEE
Confidence 3556667777 889999999999875432 236888999999999999984
No 6
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=50.77 E-value=40 Score=20.60 Aligned_cols=49 Identities=4% Similarity=-0.022 Sum_probs=39.4
Q ss_pred HHHHHHHHhCCcccHHHHHHHhhcccCCCCCCchHHHHHHHHHHHHHHHhhccccC
Q psy180 6 LAYKLHLESATMINMHDWLQSFATIVNPDGKMSDATIKARFTQAVSELQFLGFIKN 61 (77)
Q Consensus 6 ily~Ly~E~g~~INlyDw~~AF~~~~~~~~~~~~~~~~arF~rav~EL~~lG~ik~ 61 (77)
.++++..+++.-++..|.++..++..+. ..++--+|.+..|.-.|+|+.
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~-------is~~TVYR~L~~L~e~Glv~~ 63 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGEN-------IGLTTVYRTLQSMASSGLVDT 63 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCC-------CCHHHHHHHHHHHHTTTSEEE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCC-------CCHhhHHHHHHHHHHCCCEEE
Confidence 3566667888899999999999875332 236889999999999999984
No 7
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=49.55 E-value=47 Score=20.95 Aligned_cols=49 Identities=14% Similarity=0.047 Sum_probs=39.0
Q ss_pred HHHHHHHHhCCcccHHHHHHHhhcccCCCCCCchHHHHHHHHHHHHHHHhhccccC
Q psy180 6 LAYKLHLESATMINMHDWLQSFATIVNPDGKMSDATIKARFTQAVSELQFLGFIKN 61 (77)
Q Consensus 6 ily~Ly~E~g~~INlyDw~~AF~~~~~~~~~~~~~~~~arF~rav~EL~~lG~ik~ 61 (77)
.++.+..+++.-++.+|.++..++..+. .-.+--||.+..|.=.|+|+.
T Consensus 31 ~IL~~l~~~~~~~sa~ei~~~l~~~~~~-------is~aTVYR~L~~L~e~Glv~~ 79 (150)
T 2xig_A 31 EVVSVLYRSGTHLSPEEITHSIRQKDKN-------TSISSVYRILNFLEKENFISV 79 (150)
T ss_dssp HHHHHHHHCSSCBCHHHHHHHHHHHSTT-------CCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCC-------CCHhhHHHHHHHHHHCCcEEE
Confidence 3566677778889999999998775432 236888999999999999984
No 8
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=47.16 E-value=46 Score=20.99 Aligned_cols=49 Identities=6% Similarity=0.099 Sum_probs=38.7
Q ss_pred HHHHHHHHhC-CcccHHHHHHHhhcccCCCCCCchHHHHHHHHHHHHHHHhhccccC
Q psy180 6 LAYKLHLESA-TMINMHDWLQSFATIVNPDGKMSDATIKARFTQAVSELQFLGFIKN 61 (77)
Q Consensus 6 ily~Ly~E~g-~~INlyDw~~AF~~~~~~~~~~~~~~~~arF~rav~EL~~lG~ik~ 61 (77)
.++.+..+++ .-++.+|.|...+...+. .-++--||++..|.=.|+|+.
T Consensus 21 ~Il~~L~~~~~~h~sa~ei~~~l~~~~~~-------is~aTVYR~L~~L~e~Glv~~ 70 (150)
T 2w57_A 21 KILEVLQQPECQHISAEELYKKLIDLGEE-------IGLATVYRVLNQFDDAGIVTR 70 (150)
T ss_dssp HHHHHHTSGGGSSEEHHHHHHHHHHTTCC-------CCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHhCCC-------CCHHHHHHHHHHHHHCCcEEE
Confidence 3556666777 889999999999875432 236888999999999999984
No 9
>1cf7_B Protein (transcription factor DP-2); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17
Probab=45.34 E-value=32 Score=21.30 Aligned_cols=33 Identities=21% Similarity=0.397 Sum_probs=26.6
Q ss_pred chHHHHHHHHHHHHHHHhhccccCCCCCcceeeeeeecC
Q psy180 38 SDATIKARFTQAVSELQFLGFIKNCKQKIDHVSRLTWGD 76 (77)
Q Consensus 38 ~~~~~~arF~rav~EL~~lG~ik~s~rk~Dhv~K~~w~g 76 (77)
+++.+.-|.|.++.=|..+|+|...++ ++.|.|
T Consensus 56 d~~~~rRRvYD~~NVl~a~gii~K~k~------~i~W~g 88 (95)
T 1cf7_B 56 DQKNIRRRVYDALNVLMAMNIISKEKK------EIKWIG 88 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSBCCCSS------CEEBCC
T ss_pred ccccchhhHHHHHHHHHHhcceecCCC------EEEEec
Confidence 367789999999999999999996432 456776
No 10
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=40.92 E-value=65 Score=20.13 Aligned_cols=48 Identities=13% Similarity=0.075 Sum_probs=38.3
Q ss_pred HHHHHHHHhCCcccHHHHHHHhhcccCCCCCCchHHHHHHHHHHHHHHHhhccccC
Q psy180 6 LAYKLHLESATMINMHDWLQSFATIVNPDGKMSDATIKARFTQAVSELQFLGFIKN 61 (77)
Q Consensus 6 ily~Ly~E~g~~INlyDw~~AF~~~~~~~~~~~~~~~~arF~rav~EL~~lG~ik~ 61 (77)
.++++..+++ -++.+|.|...++..+. .-.+--||++..|.=.|+|+.
T Consensus 23 ~Il~~l~~~~-h~ta~ei~~~l~~~~~~-------is~~TVYR~L~~L~e~Glv~~ 70 (145)
T 3eyy_A 23 LVLEAVDTLE-HATPDDILGEVRKTASG-------INISTVYRTLELLEELGLVSH 70 (145)
T ss_dssp HHHHHHHHHS-SBCHHHHHHHHHTTCTT-------CCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHhhCCC-------CCHhHHHHHHHHHHHCCcEEE
Confidence 3566677778 89999999998865432 337889999999999999984
No 11
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=40.84 E-value=66 Score=20.62 Aligned_cols=49 Identities=10% Similarity=-0.030 Sum_probs=39.4
Q ss_pred HHHHHHHHhCCcccHHHHHHHhhcc--cCCCCCCchHHHHHHHHHHHHHHHhhccccC
Q psy180 6 LAYKLHLESATMINMHDWLQSFATI--VNPDGKMSDATIKARFTQAVSELQFLGFIKN 61 (77)
Q Consensus 6 ily~Ly~E~g~~INlyDw~~AF~~~--~~~~~~~~~~~~~arF~rav~EL~~lG~ik~ 61 (77)
.++++..+++.-++.+|.|+..+.. .+. ...+--||++.-|.=.|+|+.
T Consensus 37 ~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~-------is~aTVYRtL~~L~e~Glv~~ 87 (162)
T 4ets_A 37 VLLKTLYHSDTHYTPESLYMEIKQAEPDLN-------VGIATVYRTLNLLEEAEMVTS 87 (162)
T ss_dssp HHHHHHHSCCSCBCHHHHHHHHHHHCGGGC-------CCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhhcCCCC-------CCHHHHHHHHHHHHHCCCEEE
Confidence 4567777888899999999998765 222 237889999999999999985
No 12
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=36.50 E-value=27 Score=23.92 Aligned_cols=47 Identities=13% Similarity=0.285 Sum_probs=32.2
Q ss_pred HhCCcccHHHHHHHhhcccCCCCCCchHHHHHHHHHHHHHHHhhccccC
Q psy180 13 ESATMINMHDWLQSFATIVNPDGKMSDATIKARFTQAVSELQFLGFIKN 61 (77)
Q Consensus 13 E~g~~INlyDw~~AF~~~~~~~~~~~~~~~~arF~rav~EL~~lG~ik~ 61 (77)
+.|..++..+.++.+......... .......|.+.+.+|+..|+|..
T Consensus 304 ~~~~~~~~~~i~~~~~~~~~~~~~--~~~~~~~~~~~l~~L~~~gli~~ 350 (389)
T 1fnn_A 304 SHTPYITFGDAEESYKIVCEEYGE--RPRVHSQLWSYLNDLREKGIVET 350 (389)
T ss_dssp HCSSCEEHHHHHHHHHHHHHHTTC--CCCCHHHHHHHHHHHHHTTSSEE
T ss_pred ccCCCccHHHHHHHHHHHHHHcCC--CCCCHHHHHHHHHHHHhCCCeEE
Confidence 455578888877777665432111 11234679999999999999986
No 13
>1cf7_A Protein (transcription factor E2F-4); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17
Probab=32.86 E-value=23 Score=20.74 Aligned_cols=54 Identities=17% Similarity=0.280 Sum_probs=33.1
Q ss_pred HHHHHHHh-CCcccHHHHHHHhhcccCCCCCCchHHHHHHHHHHHHHHHhhccccCCCCCcceeeeeeecC
Q psy180 7 AYKLHLES-ATMINMHDWLQSFATIVNPDGKMSDATIKARFTQAVSELQFLGFIKNCKQKIDHVSRLTWGD 76 (77)
Q Consensus 7 ly~Ly~E~-g~~INlyDw~~AF~~~~~~~~~~~~~~~~arF~rav~EL~~lG~ik~s~rk~Dhv~K~~w~g 76 (77)
..+++.++ +..|+|.+--..+.- . ..-|+|..+.=|+-+|+|....|+ +..|.|
T Consensus 19 Fi~l~~~~~~~~i~l~~aa~~L~v----~-------~kRRiYDI~NVLe~igli~K~~k~-----~~~W~G 73 (76)
T 1cf7_A 19 FVSLLQEAKDGVLDLKLAADTLAV----R-------QKRRIYDITNVLEGIGLIEKKSKN-----SIQWKG 73 (76)
T ss_dssp HHHHHHHSSTTEEEHHHHHHHTTT----C-------CTHHHHHHHHHHHHHTSEEEEETT-----EEEEC-
T ss_pred HHHHHHhCCCCcCcHHHHHHHhCC----c-------cceehhhHHHHHhHhcceeecCCC-----cEEEeC
Confidence 34555555 445666554444322 0 246999999999999999963222 256776
No 14
>1t0f_C Protein E, transposon TN7 transposition protein TNSC; protein-protein complex, mixed alpha-beta, DNA binding protein; 1.85A {Escherichia coli}
Probab=32.45 E-value=13 Score=20.92 Aligned_cols=21 Identities=5% Similarity=0.072 Sum_probs=16.9
Q ss_pred HHHHHHHhCCcccHHHHHHHh
Q psy180 7 AYKLHLESATMINMHDWLQSF 27 (77)
Q Consensus 7 ly~Ly~E~g~~INlyDw~~AF 27 (77)
+|.....+|-..++.||+.++
T Consensus 33 ~Ye~L~~~GlI~d~~~~l~~~ 53 (54)
T 1t0f_C 33 MHERLKGKGVIVDMASLFKQA 53 (54)
T ss_dssp HHHHHHHTTSBCCHHHHSCC-
T ss_pred HHHHHHHCCceeeHHHHHhhc
Confidence 788888899999999997643
No 15
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=32.12 E-value=31 Score=19.84 Aligned_cols=16 Identities=25% Similarity=0.372 Sum_probs=14.2
Q ss_pred chHHHHHHHHHHHHHH
Q psy180 38 SDATIKARFTQAVSEL 53 (77)
Q Consensus 38 ~~~~~~arF~rav~EL 53 (77)
+..++..+|+.||..|
T Consensus 10 WT~elH~~Fv~Av~~L 25 (64)
T 1irz_A 10 WTHELHNKFLAAVDHL 25 (64)
T ss_dssp SCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh
Confidence 5789999999999976
No 16
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=26.93 E-value=83 Score=17.15 Aligned_cols=48 Identities=8% Similarity=0.128 Sum_probs=35.6
Q ss_pred HHHHHHHhC-CcccHHHHHHHhhcccCCCCCCchHHHHHHHHHHHHHHHhhccccC
Q psy180 7 AYKLHLESA-TMINMHDWLQSFATIVNPDGKMSDATIKARFTQAVSELQFLGFIKN 61 (77)
Q Consensus 7 ly~Ly~E~g-~~INlyDw~~AF~~~~~~~~~~~~~~~~arF~rav~EL~~lG~ik~ 61 (77)
+..+..+.+ ..+++.|.++.+.+..++ ...+--+|.+..|+-.|+|+.
T Consensus 22 IL~~l~~~~~~~~s~~el~~~l~~~~~~-------is~~TVyR~L~~L~~~Glv~~ 70 (83)
T 2fu4_A 22 ILEVLQEPDNHHVSAEDLYKRLIDMGEE-------IGLATVYRVLNQFDDAGIVTR 70 (83)
T ss_dssp HHHHHTSGGGSSBCHHHHHHHHHHTTCC-------CCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHhCCC-------CCHhhHHHHHHHHHHCCCeEE
Confidence 445556665 789999999998764322 235677899999999999984
No 17
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=26.43 E-value=29 Score=21.35 Aligned_cols=24 Identities=25% Similarity=0.220 Sum_probs=19.4
Q ss_pred HHHHHHHHhhccccCCCCCcceee
Q psy180 47 TQAVSELQFLGFIKNCKQKIDHVS 70 (77)
Q Consensus 47 ~rav~EL~~lG~ik~s~rk~Dhv~ 70 (77)
-+|+.+|+..|+|....++.=+|.
T Consensus 56 ReAl~~L~~eGlv~~~~g~G~~V~ 79 (134)
T 4ham_A 56 SKAYQELERQEVIITVKGKGTFIA 79 (134)
T ss_dssp HHHHHHHHHTTSEEEETTTEEEEC
T ss_pred HHHHHHHHHCCcEEEEcCcEEEEe
Confidence 589999999999987666666664
No 18
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=24.32 E-value=59 Score=17.90 Aligned_cols=26 Identities=15% Similarity=0.192 Sum_probs=18.7
Q ss_pred HHHHHhCCcccHHHHHHHhhcccCCC
Q psy180 9 KLHLESATMINMHDWLQSFATIVNPD 34 (77)
Q Consensus 9 ~Ly~E~g~~INlyDw~~AF~~~~~~~ 34 (77)
.-.++....|+..|+..|+..++...
T Consensus 52 ~a~~~~~~~i~~~d~~~Al~~v~~~~ 77 (78)
T 3kw6_A 52 YALRERRVHVTQEDFEMAVAKVMQKD 77 (78)
T ss_dssp HHHHTTCSEECHHHHHHHHHHHHC--
T ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcc
Confidence 34456677899999999998887653
No 19
>2zvv_Y Cyclin-dependent kinase inhibitor 1; protein-peptide complex, DNA replication, DNA-binding, nucleus, DNA binding protein; 2.00A {Arabidopsis thaliana} PDB: 1axc_B 2zvw_I
Probab=23.17 E-value=30 Score=16.72 Aligned_cols=15 Identities=20% Similarity=0.301 Sum_probs=10.4
Q ss_pred CcccHHHHHHHhhcc
Q psy180 16 TMINMHDWLQSFATI 30 (77)
Q Consensus 16 ~~INlyDw~~AF~~~ 30 (77)
+.-|+-|||+|=.-.
T Consensus 5 kQTs~TDFYhsKRRl 19 (26)
T 2zvv_Y 5 RQTSMTDFYHSKRRL 19 (26)
T ss_pred cccchhHHHhhhceE
Confidence 456888999875443
No 20
>2avu_E Flagellar transcriptional activator FLHC; C4-type zinc finger, transcription activator; 3.00A {Escherichia coli} SCOP: e.64.1.1
Probab=21.37 E-value=94 Score=21.36 Aligned_cols=45 Identities=11% Similarity=0.011 Sum_probs=25.9
Q ss_pred HHHHHHHHHhCC---------cccHHHHHHHhhcccCCCCCC--chHHHHHHHHHH
Q psy180 5 SLAYKLHLESAT---------MINMHDWLQSFATIVNPDGKM--SDATIKARFTQA 49 (77)
Q Consensus 5 ~ily~Ly~E~g~---------~INlyDw~~AF~~~~~~~~~~--~~~~~~arF~ra 49 (77)
|..|.+|+-.++ +|--||.|++.....+.+..- ++.=.++||+.+
T Consensus 74 Slf~~iY~~l~~~~~~~~ieAlikAyrlY~e~~~~~~~~~~Ls~tRAW~LvRf~~s 129 (192)
T 2avu_E 74 SMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQAEEGPLLALTRAWTLVRFVES 129 (192)
T ss_dssp HHHHHHHHHHHHTTTCCSHHHHHHHHHHHHHHCCCCSSCCSSCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHhccCCCCcccCHHHHHHHHHHhcc
Confidence 566777765533 445566666666321211111 366789999998
No 21
>1v66_A Protein inhibitor of activated STAT protein 1; four helix bundle, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=20.92 E-value=13 Score=21.77 Aligned_cols=23 Identities=35% Similarity=0.520 Sum_probs=15.7
Q ss_pred HHHHHh-hccccC--CCCCcceeeee
Q psy180 50 VSELQF-LGFIKN--CKQKIDHVSRL 72 (77)
Q Consensus 50 v~EL~~-lG~ik~--s~rk~Dhv~K~ 72 (77)
|+|||. ||+..- +.||.|-+.|+
T Consensus 16 VsELq~LLg~~gr~KsGrK~eL~~Ra 41 (65)
T 1v66_A 16 VSELQVLLGYAGRNKHGRKHELLTKA 41 (65)
T ss_dssp HHHHHHHHHTTCCCCCSCHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCcCcHHHHHHHH
Confidence 778875 566663 67888876654
No 22
>2yma_A YOS9P, protein OS-9 homolog; carbohydrate binding protein, quality control, endoplasmic reticulum-associated protein degradation; 2.54A {Saccharomyces cerevisiae}
Probab=20.86 E-value=1.2e+02 Score=20.52 Aligned_cols=37 Identities=16% Similarity=0.240 Sum_probs=27.6
Q ss_pred hHHHHHHHHHHHHHHHhhccccCCCCCc-ceeeeeeec
Q psy180 39 DATIKARFTQAVSELQFLGFIKNCKQKI-DHVSRLTWG 75 (77)
Q Consensus 39 ~~~~~arF~rav~EL~~lG~ik~s~rk~-Dhv~K~~w~ 75 (77)
+++.+-+|.-|+.+|-.+|+|.++.-++ ++=-..+|.
T Consensus 51 ~~~~yk~~g~A~~kml~~~ll~~P~g~p~~~gD~ftW~ 88 (161)
T 2yma_A 51 TETYYQKFGNAINKMLSLRLVSLPNGHILQPGDSCVWL 88 (161)
T ss_dssp CHHHHHHHHHHHHHHHHTTCCBCTTSCBCCTTCEEEEE
T ss_pred HHHHHHHHHHHHHHHHHhCcccCCCCCCCCCCCeEEEE
Confidence 5799999999999999999999754332 433444553
Done!