RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy180
         (77 letters)



>gnl|CDD|185269 PRK15371, PRK15371, effector protein YopJ; Provisional.
          Length = 287

 Score = 26.2 bits (58), Expect = 1.8
 Identities = 7/22 (31%), Positives = 15/22 (68%)

Query: 1   MPDVSLAYKLHLESATMINMHD 22
           +  ++LA KL+LE   ++ +H+
Sbjct: 174 IFSLALAKKLYLERDKLLKLHE 195


>gnl|CDD|225705 COG3164, COG3164, Predicted membrane protein [Function unknown].
          Length = 1271

 Score = 25.5 bits (56), Expect = 2.8
 Identities = 11/57 (19%), Positives = 17/57 (29%), Gaps = 1/57 (1%)

Query: 2   PDVSLAYKLHLESA-TMINMHDWLQSFATIVNPDGKMSDATIKARFTQAVSELQFLG 57
               L  +L +E     ++   WL   A         S A++  R       L   G
Sbjct: 866 TIPPLPAQLGVELRLPALDGDAWLALLAKGAAVSSDKSAASLPRRIDLRTPSLLLGG 922


>gnl|CDD|213929 TIGR04316, dhbA_paeA, 2,3-dihydro-2,3-dihydroxybenzoate
           dehydrogenase.  Members of this family are
           2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase (EC
           1.3.1.28), the third enzyme in the biosynthesis of
           2,3-dihydroxybenzoic acid (DHB) from chorismate. The
           first two enzymes are isochorismate synthase (EC
           5.4.4.2) and isochorismatase (EC 3.3.2.1). Synthesis is
           often followed by adenylation by the enzyme DHBA-AMP
           ligase (EC 2.7.7.58) to activate (DHB) for a
           non-ribosomal peptide synthetase.
          Length = 250

 Score = 25.3 bits (56), Expect = 3.2
 Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 4/42 (9%)

Query: 4   VSLAYKLHLESATMINMHDWLQSFATIVNPDG--KMSDATIK 43
           V++A  L L +   ++  DW  +FA  VN  G   +S A   
Sbjct: 80  VNVAGILRLGAIDSLSDEDWQATFA--VNTFGVFNVSQAVSP 119


>gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional.
          Length = 1388

 Score = 24.2 bits (53), Expect = 8.4
 Identities = 7/22 (31%), Positives = 10/22 (45%), Gaps = 1/22 (4%)

Query: 7   AYKLHLESATMINMHDWLQSFA 28
            YK  LES T+    D +  + 
Sbjct: 901 DYKEFLESETLKE-KDVIVDYR 921


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.321    0.131    0.398 

Gapped
Lambda     K      H
   0.267   0.0742    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,682,534
Number of extensions: 259011
Number of successful extensions: 213
Number of sequences better than 10.0: 1
Number of HSP's gapped: 213
Number of HSP's successfully gapped: 8
Length of query: 77
Length of database: 10,937,602
Length adjustment: 46
Effective length of query: 31
Effective length of database: 8,897,318
Effective search space: 275816858
Effective search space used: 275816858
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.2 bits)