RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy180
         (77 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
          acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
          synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 26.2 bits (57), Expect = 1.2
 Identities = 11/57 (19%), Positives = 23/57 (40%), Gaps = 5/57 (8%)

Query: 5  SLAYKLHLESATMINMHDWLQSFATIVNPDGKMSDATIKARFTQAVSEL--QFLGFI 59
          SL + L + +A+        + F  I+      ++           +EL  +FLG++
Sbjct: 15 SLEHVLLVPTASFFIASQLQEQFNKILPEP---TEGFAADDEPTTPAELVGKFLGYV 68


>1f0x_A DLDH, D-lactate dehydrogenase; oxidoreductase; HET: FAD; 1.90A
          {Escherichia coli} SCOP: d.58.32.2 d.145.1.1
          Length = 571

 Score = 24.2 bits (52), Expect = 4.9
 Identities = 8/35 (22%), Positives = 15/35 (42%)

Query: 14 SATMINMHDWLQSFATIVNPDGKMSDATIKARFTQ 48
          S T  +   +L   A +V     ++D    AR+ +
Sbjct: 3  SMTTTDNKAFLNELARLVGSSHLLTDPAKTARYRK 37


>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop,
           phenylalanine mutant, hydrolase; 2.35A {Pyrococcus
           horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A
           3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A
           3sdz_A
          Length = 588

 Score = 24.3 bits (53), Expect = 5.7
 Identities = 10/54 (18%), Positives = 18/54 (33%), Gaps = 6/54 (11%)

Query: 3   DVSLAYKLHLESATMINMHDWLQSFATIVNPDGKMSDATIKARFTQAVSELQFL 56
           D  LA + H  +       +WL S++  V+         I   +     +   L
Sbjct: 418 DADLARRRHFPAI------NWLTSYSLYVDAVKDWWHKNIDPEWKAMRDKAMAL 465


>1l6r_A Hypothetical protein TA0175; structural genomics, putative
          hydrolas midwest center for structural genomics, MCSG,
          PSI; 1.40A {Thermoplasma acidophilum} SCOP: c.108.1.10
          PDB: 1kyt_A
          Length = 227

 Score = 23.7 bits (52), Expect = 6.8
 Identities = 3/16 (18%), Positives = 8/16 (50%)

Query: 29 TIVNPDGKMSDATIKA 44
           + + D  +S   I++
Sbjct: 15 NLTDRDRLISTKAIES 30


>1wr8_A Phosphoglycolate phosphatase; alpha / beta core domain, HAD
          superfamily, structural genomi structural
          genomics/proteomics initiative, RSGI; 1.60A {Pyrococcus
          horikoshii} SCOP: c.108.1.10
          Length = 231

 Score = 23.6 bits (52), Expect = 7.1
 Identities = 4/16 (25%), Positives = 9/16 (56%)

Query: 29 TIVNPDGKMSDATIKA 44
          TI  P+  + +  ++A
Sbjct: 13 TITYPNRMIHEKALEA 28


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.321    0.131    0.398 

Gapped
Lambda     K      H
   0.267   0.0667    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,122,819
Number of extensions: 48408
Number of successful extensions: 106
Number of sequences better than 10.0: 1
Number of HSP's gapped: 106
Number of HSP's successfully gapped: 7
Length of query: 77
Length of database: 6,701,793
Length adjustment: 46
Effective length of query: 31
Effective length of database: 5,417,427
Effective search space: 167940237
Effective search space used: 167940237
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.6 bits)