RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy180
         (77 letters)



>d1f1sa1 a.102.3.2 (A:249-619) Hyaluronate lyase {Streptococcus
           agalactiae [TaxId: 1311]}
          Length = 371

 Score = 26.0 bits (57), Expect = 0.39
 Identities = 9/37 (24%), Positives = 21/37 (56%)

Query: 9   KLHLESATMINMHDWLQSFATIVNPDGKMSDATIKAR 45
           K  + S    N+ + L+S++ I N +  ++D+T+  +
Sbjct: 334 KTIITSNKFYNVFNNLKSYSDIANMNKLLNDSTVATK 370


>d1rtta_ c.23.5.4 (A:) Hypothetical protein PA1204 {Pseudomonas
           aeruginosa [TaxId: 287]}
          Length = 174

 Score = 24.3 bits (52), Expect = 1.7
 Identities = 6/31 (19%), Positives = 12/31 (38%)

Query: 24  LQSFATIVNPDGKMSDATIKARFTQAVSELQ 54
           + S     +  G++ D   +    Q +  LQ
Sbjct: 143 ISSAQNAFDAQGRLLDDKARELIQQQLQALQ 173


>d1su3a1 a.20.1.2 (A:32-98) Fibroblast collagenase (MMP-1) {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 67

 Score = 22.4 bits (48), Expect = 4.8
 Identities = 6/43 (13%), Positives = 16/43 (37%), Gaps = 1/43 (2%)

Query: 22 DWLQSFATIVNPDGKMSDATIKARFTQAVSELQ-FLGFIKNCK 63
           +L+ +  + N   ++          + + ++Q F G     K
Sbjct: 5  KYLEKYYNLKNDGRQVEKRRNSGPVVEKLKQMQEFFGLKVTGK 47


>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 61

 Score = 22.0 bits (47), Expect = 6.9
 Identities = 7/37 (18%), Positives = 16/37 (43%), Gaps = 1/37 (2%)

Query: 19 NMHDWLQSFATIV-NPDGKMSDATIKARFTQAVSELQ 54
          +++D +     +V   D KM  + +  +    +  LQ
Sbjct: 3  SINDKIIELKDLVMGTDAKMHKSGVLRKAIDYIKYLQ 39


>d1n7oa1 a.102.3.2 (A:170-540) Hyaluronate lyase {Streptococcus
           pneumoniae [TaxId: 1313]}
          Length = 371

 Score = 22.2 bits (47), Expect = 9.2
 Identities = 7/37 (18%), Positives = 18/37 (48%)

Query: 9   KLHLESATMINMHDWLQSFATIVNPDGKMSDATIKAR 45
           K  ++S +  ++   L+++  I      +SDA + + 
Sbjct: 333 KTIVQSDSYYDVFKNLKTYKDISLMQSLLSDAGVASV 369


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.131    0.398 

Gapped
Lambda     K      H
   0.267   0.0675    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 277,822
Number of extensions: 9185
Number of successful extensions: 20
Number of sequences better than 10.0: 1
Number of HSP's gapped: 20
Number of HSP's successfully gapped: 5
Length of query: 77
Length of database: 2,407,596
Length adjustment: 44
Effective length of query: 33
Effective length of database: 1,803,476
Effective search space: 59514708
Effective search space used: 59514708
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.0 bits)