BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1800
(81 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5UAP0|RS4_BOMMO 40S ribosomal protein S4 OS=Bombyx mori GN=RpS4 PE=2 SV=1
Length = 263
Score = 116 bits (291), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 53/63 (84%), Positives = 58/63 (92%)
Query: 4 GNLCMITGGRNLGRVGTVVNRERHPGSFDIVHVKDGNGHVFATRLNNVFIIGKGTKAFCS 63
GNLCMITGGRNLGRVGT+V+RERHPGSFDIVH+KD GH FATRLNNVFIIGKGTKA+ S
Sbjct: 178 GNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYIS 237
Query: 64 KPK 66
P+
Sbjct: 238 LPR 240
>sp|Q95V34|RS4_SPOFR 40S ribosomal protein S4 OS=Spodoptera frugiperda GN=RpS4 PE=2 SV=1
Length = 263
Score = 116 bits (290), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 53/63 (84%), Positives = 58/63 (92%)
Query: 4 GNLCMITGGRNLGRVGTVVNRERHPGSFDIVHVKDGNGHVFATRLNNVFIIGKGTKAFCS 63
GNLCMITGGRNLGRVGT+V+RERHPGSFDIVH+KD GH FATRLNNVFIIGKGTKA+ S
Sbjct: 178 GNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYIS 237
Query: 64 KPK 66
P+
Sbjct: 238 LPR 240
>sp|Q4GXU6|RS4_CARGR 40S ribosomal protein S4 OS=Carabus granulatus GN=RpS4 PE=2 SV=1
Length = 261
Score = 115 bits (289), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 53/63 (84%), Positives = 57/63 (90%)
Query: 4 GNLCMITGGRNLGRVGTVVNRERHPGSFDIVHVKDGNGHVFATRLNNVFIIGKGTKAFCS 63
GNLCMITGGRNLGRVGTVVNRERHPGSFDIVH+KD GH FA RLNNVFIIGKG+KA+ S
Sbjct: 178 GNLCMITGGRNLGRVGTVVNRERHPGSFDIVHIKDSQGHTFANRLNNVFIIGKGSKAYVS 237
Query: 64 KPK 66
P+
Sbjct: 238 LPR 240
>sp|P41042|RS4_DROME 40S ribosomal protein S4 OS=Drosophila melanogaster GN=RpS4 PE=2
SV=2
Length = 261
Score = 115 bits (288), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 54/63 (85%), Positives = 56/63 (88%)
Query: 4 GNLCMITGGRNLGRVGTVVNRERHPGSFDIVHVKDGNGHVFATRLNNVFIIGKGTKAFCS 63
GNLCMITGGRNLGRVGTVVNRERHPGSFDIVH+KD GHVFATRL NVFIIGKG K + S
Sbjct: 178 GNLCMITGGRNLGRVGTVVNRERHPGSFDIVHIKDSQGHVFATRLTNVFIIGKGNKPYIS 237
Query: 64 KPK 66
PK
Sbjct: 238 LPK 240
>sp|Q56FH2|RS4_LYSTE 40S ribosomal protein S4 OS=Lysiphlebus testaceipes GN=RpS4 PE=2
SV=1
Length = 262
Score = 112 bits (279), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 51/63 (80%), Positives = 57/63 (90%)
Query: 4 GNLCMITGGRNLGRVGTVVNRERHPGSFDIVHVKDGNGHVFATRLNNVFIIGKGTKAFCS 63
GNLCMITGGRNLGRVGTVV+RERHPGSFDI H+KD GH FATR+NNVFIIGKG+KA+ S
Sbjct: 178 GNLCMITGGRNLGRVGTVVSRERHPGSFDICHIKDSQGHTFATRMNNVFIIGKGSKAYVS 237
Query: 64 KPK 66
P+
Sbjct: 238 LPR 240
>sp|Q6PBC4|RS4_XENTR 40S ribosomal protein S4 OS=Xenopus tropicalis GN=rps4 PE=2 SV=3
Length = 263
Score = 101 bits (252), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 44/63 (69%), Positives = 54/63 (85%)
Query: 4 GNLCMITGGRNLGRVGTVVNRERHPGSFDIVHVKDGNGHVFATRLNNVFIIGKGTKAFCS 63
GNLCM+TGG NLGR+G + NRERHPGSFD+VHVKD NG+ FATRL+N+F+IGKG K + S
Sbjct: 178 GNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWIS 237
Query: 64 KPK 66
P+
Sbjct: 238 LPR 240
>sp|Q90YS0|RS4_ICTPU 40S ribosomal protein S4 OS=Ictalurus punctatus GN=rps4 PE=2 SV=3
Length = 263
Score = 101 bits (252), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 44/63 (69%), Positives = 54/63 (85%)
Query: 4 GNLCMITGGRNLGRVGTVVNRERHPGSFDIVHVKDGNGHVFATRLNNVFIIGKGTKAFCS 63
GNLCM+TGG NLGR+G + NRERHPGSFD+VHVKD G+ FATRL+N+F+IGKG KA+ S
Sbjct: 178 GNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDSTGNSFATRLSNIFVIGKGNKAWVS 237
Query: 64 KPK 66
P+
Sbjct: 238 IPR 240
>sp|P47836|RS4_CHICK 40S ribosomal protein S4 OS=Gallus gallus GN=RPS4 PE=2 SV=2
Length = 263
Score = 101 bits (251), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 44/63 (69%), Positives = 54/63 (85%)
Query: 4 GNLCMITGGRNLGRVGTVVNRERHPGSFDIVHVKDGNGHVFATRLNNVFIIGKGTKAFCS 63
GNLCM+TGG NLGR+G + NRERHPGSFD+VHVKD NG+ FATRL+N+F+IGKG K + S
Sbjct: 178 GNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWIS 237
Query: 64 KPK 66
P+
Sbjct: 238 LPR 240
>sp|P47961|RS4_CRIGR 40S ribosomal protein S4 OS=Cricetulus griseus GN=RPS4 PE=2 SV=2
Length = 263
Score = 101 bits (251), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 44/63 (69%), Positives = 54/63 (85%)
Query: 4 GNLCMITGGRNLGRVGTVVNRERHPGSFDIVHVKDGNGHVFATRLNNVFIIGKGTKAFCS 63
GNLCM+TGG NLGR+G + NRERHPGSFD+VHVKD NG+ FATRL+N+F+IGKG K + S
Sbjct: 178 GNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWIS 237
Query: 64 KPK 66
P+
Sbjct: 238 LPR 240
>sp|P79103|RS4_BOVIN 40S ribosomal protein S4 OS=Bos taurus GN=RPS4 PE=2 SV=3
Length = 263
Score = 101 bits (251), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 44/63 (69%), Positives = 54/63 (85%)
Query: 4 GNLCMITGGRNLGRVGTVVNRERHPGSFDIVHVKDGNGHVFATRLNNVFIIGKGTKAFCS 63
GNLCM+TGG NLGR+G + NRERHPGSFD+VHVKD NG+ FATRL+N+F+IGKG K + S
Sbjct: 178 GNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWIS 237
Query: 64 KPK 66
P+
Sbjct: 238 LPR 240
>sp|P62703|RS4X_RAT 40S ribosomal protein S4, X isoform OS=Rattus norvegicus GN=Rps4x
PE=2 SV=2
Length = 263
Score = 101 bits (251), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 44/63 (69%), Positives = 54/63 (85%)
Query: 4 GNLCMITGGRNLGRVGTVVNRERHPGSFDIVHVKDGNGHVFATRLNNVFIIGKGTKAFCS 63
GNLCM+TGG NLGR+G + NRERHPGSFD+VHVKD NG+ FATRL+N+F+IGKG K + S
Sbjct: 178 GNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWIS 237
Query: 64 KPK 66
P+
Sbjct: 238 LPR 240
>sp|P62702|RS4X_MOUSE 40S ribosomal protein S4, X isoform OS=Mus musculus GN=Rps4x PE=2
SV=2
Length = 263
Score = 101 bits (251), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 44/63 (69%), Positives = 54/63 (85%)
Query: 4 GNLCMITGGRNLGRVGTVVNRERHPGSFDIVHVKDGNGHVFATRLNNVFIIGKGTKAFCS 63
GNLCM+TGG NLGR+G + NRERHPGSFD+VHVKD NG+ FATRL+N+F+IGKG K + S
Sbjct: 178 GNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWIS 237
Query: 64 KPK 66
P+
Sbjct: 238 LPR 240
>sp|P62704|RS4X_MESAU 40S ribosomal protein S4, X isoform OS=Mesocricetus auratus
GN=RPS4X PE=2 SV=2
Length = 263
Score = 101 bits (251), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 44/63 (69%), Positives = 54/63 (85%)
Query: 4 GNLCMITGGRNLGRVGTVVNRERHPGSFDIVHVKDGNGHVFATRLNNVFIIGKGTKAFCS 63
GNLCM+TGG NLGR+G + NRERHPGSFD+VHVKD NG+ FATRL+N+F+IGKG K + S
Sbjct: 178 GNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWIS 237
Query: 64 KPK 66
P+
Sbjct: 238 LPR 240
>sp|Q76MY1|RS4X_MACFU 40S ribosomal protein S4, X isoform OS=Macaca fuscata fuscata
GN=RPS4X PE=2 SV=3
Length = 263
Score = 101 bits (251), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 44/63 (69%), Positives = 54/63 (85%)
Query: 4 GNLCMITGGRNLGRVGTVVNRERHPGSFDIVHVKDGNGHVFATRLNNVFIIGKGTKAFCS 63
GNLCM+TGG NLGR+G + NRERHPGSFD+VHVKD NG+ FATRL+N+F+IGKG K + S
Sbjct: 178 GNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWIS 237
Query: 64 KPK 66
P+
Sbjct: 238 LPR 240
>sp|P62701|RS4X_HUMAN 40S ribosomal protein S4, X isoform OS=Homo sapiens GN=RPS4X PE=1
SV=2
Length = 263
Score = 101 bits (251), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 44/63 (69%), Positives = 54/63 (85%)
Query: 4 GNLCMITGGRNLGRVGTVVNRERHPGSFDIVHVKDGNGHVFATRLNNVFIIGKGTKAFCS 63
GNLCM+TGG NLGR+G + NRERHPGSFD+VHVKD NG+ FATRL+N+F+IGKG K + S
Sbjct: 178 GNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWIS 237
Query: 64 KPK 66
P+
Sbjct: 238 LPR 240
>sp|P62705|RS4X_FELCA 40S ribosomal protein S4, X isoform OS=Felis catus GN=RPS4X PE=2
SV=2
Length = 263
Score = 101 bits (251), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 44/63 (69%), Positives = 54/63 (85%)
Query: 4 GNLCMITGGRNLGRVGTVVNRERHPGSFDIVHVKDGNGHVFATRLNNVFIIGKGTKAFCS 63
GNLCM+TGG NLGR+G + NRERHPGSFD+VHVKD NG+ FATRL+N+F+IGKG K + S
Sbjct: 178 GNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWIS 237
Query: 64 KPK 66
P+
Sbjct: 238 LPR 240
>sp|Q76N24|RS4X_CHLAE 40S ribosomal protein S4, X isoform OS=Chlorocebus aethiops
GN=RPS4X PE=2 SV=3
Length = 263
Score = 101 bits (251), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 44/63 (69%), Positives = 54/63 (85%)
Query: 4 GNLCMITGGRNLGRVGTVVNRERHPGSFDIVHVKDGNGHVFATRLNNVFIIGKGTKAFCS 63
GNLCM+TGG NLGR+G + NRERHPGSFD+VHVKD NG+ FATRL+N+F+IGKG K + S
Sbjct: 178 GNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWIS 237
Query: 64 KPK 66
P+
Sbjct: 238 LPR 240
>sp|Q4PMB3|RS4_IXOSC 40S ribosomal protein S4 OS=Ixodes scapularis GN=RpS4 PE=2 SV=1
Length = 262
Score = 101 bits (251), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 44/63 (69%), Positives = 52/63 (82%)
Query: 4 GNLCMITGGRNLGRVGTVVNRERHPGSFDIVHVKDGNGHVFATRLNNVFIIGKGTKAFCS 63
GN+CM+TGG NLGRVG + +RERHPGSFDIVHVKD GH FATRLN +F+IGK TK + S
Sbjct: 178 GNVCMVTGGHNLGRVGVITSRERHPGSFDIVHVKDSQGHSFATRLNYIFVIGKSTKPYIS 237
Query: 64 KPK 66
P+
Sbjct: 238 LPR 240
>sp|P49401|RS4_XENLA 40S ribosomal protein S4 OS=Xenopus laevis GN=rps4 PE=2 SV=4
Length = 263
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 44/63 (69%), Positives = 54/63 (85%)
Query: 4 GNLCMITGGRNLGRVGTVVNRERHPGSFDIVHVKDGNGHVFATRLNNVFIIGKGTKAFCS 63
GNLCM+TGG NLGR+G + NRERHPGSFD+VHVKD NG+ FATRL+N+F+IGKG K + S
Sbjct: 178 GNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNNFATRLSNIFVIGKGNKPWIS 237
Query: 64 KPK 66
P+
Sbjct: 238 LPR 240
>sp|O62739|RS4Y1_MONDO 40S ribosomal protein S4, Y isoform 1 OS=Monodelphis domestica
GN=RPS4Y1 PE=2 SV=3
Length = 263
Score = 100 bits (249), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 43/63 (68%), Positives = 54/63 (85%)
Query: 4 GNLCMITGGRNLGRVGTVVNRERHPGSFDIVHVKDGNGHVFATRLNNVFIIGKGTKAFCS 63
GNLCM+TGG NLGR+G + NRE+HPGSFD+VHVKD NG+ FATRL+N+F+IGKG K + S
Sbjct: 178 GNLCMVTGGANLGRIGVITNREKHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWIS 237
Query: 64 KPK 66
P+
Sbjct: 238 LPR 240
>sp|O62738|RS4X_MONDO 40S ribosomal protein S4, X isoform OS=Monodelphis domestica
GN=RPS4X PE=2 SV=3
Length = 263
Score = 99.4 bits (246), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 42/63 (66%), Positives = 54/63 (85%)
Query: 4 GNLCMITGGRNLGRVGTVVNRERHPGSFDIVHVKDGNGHVFATRLNNVFIIGKGTKAFCS 63
GN+CM+TGG NLGR+G + NRE+HPGSFD+VHVKD NG+ FATRL+N+F+IGKG K + S
Sbjct: 178 GNMCMVTGGANLGRIGVITNREKHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWIS 237
Query: 64 KPK 66
P+
Sbjct: 238 LPR 240
>sp|P22090|RS4Y1_HUMAN 40S ribosomal protein S4, Y isoform 1 OS=Homo sapiens GN=RPS4Y1
PE=1 SV=2
Length = 263
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 43/63 (68%), Positives = 52/63 (82%)
Query: 4 GNLCMITGGRNLGRVGTVVNRERHPGSFDIVHVKDGNGHVFATRLNNVFIIGKGTKAFCS 63
GNLCM+ GG NLGRVG + NRERHPGSFD+VHVKD NG+ FATRL+N+F+IG G K + S
Sbjct: 178 GNLCMVIGGANLGRVGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGNGNKPWIS 237
Query: 64 KPK 66
P+
Sbjct: 238 LPR 240
>sp|Q861U9|RS4Y1_PANTR 40S ribosomal protein S4, Y isoform 1 OS=Pan troglodytes GN=RPS4Y1
PE=2 SV=2
Length = 263
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 43/63 (68%), Positives = 52/63 (82%)
Query: 4 GNLCMITGGRNLGRVGTVVNRERHPGSFDIVHVKDGNGHVFATRLNNVFIIGKGTKAFCS 63
GNLCM+ GG NLGRVG + NRERHPGSFD+VHVKD NG+ FATRL+N+F+IG G K + S
Sbjct: 178 GNLCMVIGGANLGRVGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGNGNKPWIS 237
Query: 64 KPK 66
P+
Sbjct: 238 LPR 240
>sp|Q861V0|RS4Y1_PANPA 40S ribosomal protein S4, Y isoform 1 OS=Pan paniscus GN=RPS4Y1
PE=3 SV=2
Length = 263
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 43/63 (68%), Positives = 52/63 (82%)
Query: 4 GNLCMITGGRNLGRVGTVVNRERHPGSFDIVHVKDGNGHVFATRLNNVFIIGKGTKAFCS 63
GNLCM+ GG NLGRVG + NRERHPGSFD+VHVKD NG+ FATRL+N+F+IG G K + S
Sbjct: 178 GNLCMVIGGANLGRVGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGNGNKPWIS 237
Query: 64 KPK 66
P+
Sbjct: 238 LPR 240
>sp|Q861U8|RS4Y1_GORGO 40S ribosomal protein S4, Y isoform 1 OS=Gorilla gorilla gorilla
GN=RPS4Y1 PE=3 SV=2
Length = 263
Score = 96.3 bits (238), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 42/63 (66%), Positives = 52/63 (82%)
Query: 4 GNLCMITGGRNLGRVGTVVNRERHPGSFDIVHVKDGNGHVFATRLNNVFIIGKGTKAFCS 63
GNLCM+ GG NLGRVG + NRERHPGSFD+VHVKD NG+ FATR++N+F+IG G K + S
Sbjct: 178 GNLCMVIGGANLGRVGVITNRERHPGSFDVVHVKDANGNSFATRISNIFVIGNGNKPWIS 237
Query: 64 KPK 66
P+
Sbjct: 238 LPR 240
>sp|Q642H9|RS4X_DANRE 40S ribosomal protein S4, X isoform OS=Danio rerio GN=rps4x PE=2
SV=3
Length = 263
Score = 95.9 bits (237), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 41/63 (65%), Positives = 53/63 (84%)
Query: 4 GNLCMITGGRNLGRVGTVVNRERHPGSFDIVHVKDGNGHVFATRLNNVFIIGKGTKAFCS 63
GN+CM+TGG NLGR+G + NRE+HPGSFD+VHVKD G+ FATRL+N+F+IGKG K + S
Sbjct: 178 GNMCMVTGGANLGRIGVITNREKHPGSFDVVHVKDSIGNSFATRLSNIFVIGKGNKPWVS 237
Query: 64 KPK 66
P+
Sbjct: 238 LPR 240
>sp|P51405|RS4_DICDI 40S ribosomal protein S4 OS=Dictyostelium discoideum GN=rps4 PE=1
SV=3
Length = 267
Score = 95.5 bits (236), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 44/61 (72%), Positives = 49/61 (80%)
Query: 5 NLCMITGGRNLGRVGTVVNRERHPGSFDIVHVKDGNGHVFATRLNNVFIIGKGTKAFCSK 64
NLCMI GG NLGRVG V +RE+HPGSFDIVHV D GH FATRL+NVFIIGK ++ F S
Sbjct: 179 NLCMIVGGHNLGRVGAVTHREKHPGSFDIVHVTDTAGHQFATRLSNVFIIGKASQTFVSL 238
Query: 65 P 65
P
Sbjct: 239 P 239
>sp|Q861U7|RS4Y1_PONPY 40S ribosomal protein S4, Y isoform 1 OS=Pongo pygmaeus GN=RPS4Y1
PE=3 SV=2
Length = 263
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 41/63 (65%), Positives = 52/63 (82%)
Query: 4 GNLCMITGGRNLGRVGTVVNRERHPGSFDIVHVKDGNGHVFATRLNNVFIIGKGTKAFCS 63
GN+CM+ GG NLGRVG + NRERHPGSFD+VHVKD NG+ FATR++N+F+IG G K + S
Sbjct: 178 GNVCMVIGGANLGRVGVITNRERHPGSFDVVHVKDANGNSFATRISNIFVIGNGNKPWIS 237
Query: 64 KPK 66
P+
Sbjct: 238 LPR 240
>sp|P79183|RS4Y1_MACFU 40S ribosomal protein S4, Y isoform 1 OS=Macaca fuscata fuscata
GN=RPS4Y1 PE=2 SV=3
Length = 263
Score = 93.6 bits (231), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 40/63 (63%), Positives = 52/63 (82%)
Query: 4 GNLCMITGGRNLGRVGTVVNRERHPGSFDIVHVKDGNGHVFATRLNNVFIIGKGTKAFCS 63
GN+CM+ GG NLGRVG + NRERHPGSFD+VHVKD +G+ FATR++N+F+IG G K + S
Sbjct: 178 GNVCMVIGGANLGRVGVITNRERHPGSFDVVHVKDASGNSFATRISNIFVIGNGNKPWIS 237
Query: 64 KPK 66
P+
Sbjct: 238 LPR 240
>sp|Q6GVM7|RS4Y2_PANTR 40S ribosomal protein S4, Y isoform 2 OS=Pan troglodytes GN=RPS4Y2
PE=2 SV=3
Length = 263
Score = 92.0 bits (227), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 41/63 (65%), Positives = 51/63 (80%)
Query: 4 GNLCMITGGRNLGRVGTVVNRERHPGSFDIVHVKDGNGHVFATRLNNVFIIGKGTKAFCS 63
GN+CM+ GG NLGRVG V NRERHPGS D+VHVKD NG+ FATR++N+F+IG G K + S
Sbjct: 178 GNVCMVIGGANLGRVGVVTNRERHPGSCDVVHVKDANGNSFATRISNIFVIGNGNKPWIS 237
Query: 64 KPK 66
P+
Sbjct: 238 LPR 240
>sp|P46299|RS4_GOSHI 40S ribosomal protein S4 OS=Gossypium hirsutum GN=RPS4 PE=2 SV=1
Length = 262
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 42/65 (64%), Positives = 50/65 (76%)
Query: 4 GNLCMITGGRNLGRVGTVVNRERHPGSFDIVHVKDGNGHVFATRLNNVFIIGKGTKAFCS 63
GN+ M+TGGRN GRVG + NRE+H GSF+ +HV+D GH FATRL NVF IGKGTK + S
Sbjct: 178 GNVVMVTGGRNRGRVGVIKNREKHKGSFETIHVQDAAGHEFATRLGNVFTIGKGTKPWVS 237
Query: 64 KPKRN 68
PKR
Sbjct: 238 LPKRK 242
>sp|P49204|RS42_ARATH 40S ribosomal protein S4-2 OS=Arabidopsis thaliana GN=RPS4B PE=2
SV=4
Length = 262
Score = 90.1 bits (222), Expect = 3e-18, Method: Composition-based stats.
Identities = 39/63 (61%), Positives = 49/63 (77%)
Query: 4 GNLCMITGGRNLGRVGTVVNRERHPGSFDIVHVKDGNGHVFATRLNNVFIIGKGTKAFCS 63
GN+ M+TGGRN GRVG + NRE+H GSF+ +H++D GH FATRL NV+ IGKGTK + S
Sbjct: 178 GNVVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVS 237
Query: 64 KPK 66
PK
Sbjct: 238 LPK 240
>sp|Q8VYK6|RS43_ARATH 40S ribosomal protein S4-3 OS=Arabidopsis thaliana GN=RPS4D PE=2
SV=2
Length = 262
Score = 90.1 bits (222), Expect = 4e-18, Method: Composition-based stats.
Identities = 39/63 (61%), Positives = 49/63 (77%)
Query: 4 GNLCMITGGRNLGRVGTVVNRERHPGSFDIVHVKDGNGHVFATRLNNVFIIGKGTKAFCS 63
GN+ M+TGGRN GRVG + NRE+H GSF+ +H++D GH FATRL NV+ IGKGTK + S
Sbjct: 178 GNVVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVS 237
Query: 64 KPK 66
PK
Sbjct: 238 LPK 240
>sp|Q93VH9|RS41_ARATH 40S ribosomal protein S4-1 OS=Arabidopsis thaliana GN=RPS4A PE=2
SV=1
Length = 261
Score = 90.1 bits (222), Expect = 4e-18, Method: Composition-based stats.
Identities = 39/63 (61%), Positives = 49/63 (77%)
Query: 4 GNLCMITGGRNLGRVGTVVNRERHPGSFDIVHVKDGNGHVFATRLNNVFIIGKGTKAFCS 63
GN+ M+TGGRN GRVG + NRE+H GSF+ +H++D GH FATRL NV+ IGKGTK + S
Sbjct: 178 GNVVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVS 237
Query: 64 KPK 66
PK
Sbjct: 238 LPK 240
>sp|O81363|RS4_PRUAR 40S ribosomal protein S4 OS=Prunus armeniaca GN=RPS4 PE=2 SV=1
Length = 261
Score = 90.1 bits (222), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 41/63 (65%), Positives = 49/63 (77%)
Query: 4 GNLCMITGGRNLGRVGTVVNRERHPGSFDIVHVKDGNGHVFATRLNNVFIIGKGTKAFCS 63
GN+ M+TGGRN GRVG + NRE+H GSF+ +HV+D GH FATRL NVF IGKGTK + S
Sbjct: 174 GNVVMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLGNVFTIGKGTKPWVS 233
Query: 64 KPK 66
PK
Sbjct: 234 LPK 236
>sp|Q8TD47|RS4Y2_HUMAN 40S ribosomal protein S4, Y isoform 2 OS=Homo sapiens GN=RPS4Y2
PE=2 SV=3
Length = 263
Score = 89.7 bits (221), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 39/63 (61%), Positives = 50/63 (79%)
Query: 4 GNLCMITGGRNLGRVGTVVNRERHPGSFDIVHVKDGNGHVFATRLNNVFIIGKGTKAFCS 63
GN+CM+ G NLGRVG + NRERHPGS D+VHVKD NG+ FATR++N+F+IG G K + S
Sbjct: 178 GNVCMVIAGANLGRVGVITNRERHPGSCDVVHVKDANGNSFATRISNIFVIGNGNKPWIS 237
Query: 64 KPK 66
P+
Sbjct: 238 LPR 240
>sp|Q9N3X2|RS4_CAEEL 40S ribosomal protein S4 OS=Caenorhabditis elegans GN=rps-4 PE=1
SV=1
Length = 259
Score = 89.7 bits (221), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 40/63 (63%), Positives = 50/63 (79%)
Query: 3 PGNLCMITGGRNLGRVGTVVNRERHPGSFDIVHVKDGNGHVFATRLNNVFIIGKGTKAFC 62
PGNL +TGGRN+GRVG + +RER PG+ DI+H+KD GH FATR++NVF+IGKG KA
Sbjct: 176 PGNLAYVTGGRNVGRVGIIGHRERLPGASDIIHIKDSAGHSFATRISNVFVIGKGNKALV 235
Query: 63 SKP 65
S P
Sbjct: 236 SLP 238
>sp|P46300|RS4_SOLTU 40S ribosomal protein S4 OS=Solanum tuberosum GN=RPS4 PE=2 SV=1
Length = 264
Score = 89.0 bits (219), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 39/63 (61%), Positives = 49/63 (77%)
Query: 4 GNLCMITGGRNLGRVGTVVNRERHPGSFDIVHVKDGNGHVFATRLNNVFIIGKGTKAFCS 63
GN+ M+TGGRN GRVG + NRE+H GSF+ +H++D GH FATRL NVF +GKGTK + S
Sbjct: 178 GNVVMVTGGRNRGRVGVIKNREKHKGSFETLHIQDSQGHEFATRLGNVFTLGKGTKPWVS 237
Query: 64 KPK 66
PK
Sbjct: 238 LPK 240
>sp|P49398|RS4_ORYSJ 40S ribosomal protein S4 OS=Oryza sativa subsp. japonica GN=RPS4
PE=2 SV=3
Length = 265
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 40/63 (63%), Positives = 48/63 (76%)
Query: 4 GNLCMITGGRNLGRVGTVVNRERHPGSFDIVHVKDGNGHVFATRLNNVFIIGKGTKAFCS 63
GN+ M+TGGRN GRVG + NRE+H GSF+ +HV+D GH FATRL NVF IGKG K + S
Sbjct: 178 GNVVMVTGGRNTGRVGVIKNREKHKGSFETIHVEDALGHQFATRLGNVFTIGKGNKPWVS 237
Query: 64 KPK 66
PK
Sbjct: 238 LPK 240
>sp|O59950|RS4_YARLI 40S ribosomal protein S4 OS=Yarrowia lipolytica (strain CLIB 122 /
E 150) GN=RPS4 PE=2 SV=1
Length = 260
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 39/63 (61%), Positives = 48/63 (76%)
Query: 4 GNLCMITGGRNLGRVGTVVNRERHPGSFDIVHVKDGNGHVFATRLNNVFIIGKGTKAFCS 63
GN+ M TGGRN+GRVGT+ +RERH G FDIVH+KD + F TRL NVF+IG+G K+ S
Sbjct: 178 GNIVMTTGGRNMGRVGTITHRERHEGGFDIVHIKDALDNQFVTRLTNVFVIGEGNKSLIS 237
Query: 64 KPK 66
PK
Sbjct: 238 LPK 240
>sp|O22424|RS4_MAIZE 40S ribosomal protein S4 OS=Zea mays GN=RPS4 PE=2 SV=1
Length = 265
Score = 86.3 bits (212), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 39/63 (61%), Positives = 48/63 (76%)
Query: 4 GNLCMITGGRNLGRVGTVVNRERHPGSFDIVHVKDGNGHVFATRLNNVFIIGKGTKAFCS 63
GN+ M+TGGRN GRVG + NRE+H GSF+ +HV+D GH FATR+ NVF IGKG K + S
Sbjct: 178 GNVVMVTGGRNTGRVGVIKNREKHKGSFETIHVEDSLGHQFATRMGNVFTIGKGNKPWVS 237
Query: 64 KPK 66
PK
Sbjct: 238 LPK 240
>sp|P0CX36|RS4B_YEAST 40S ribosomal protein S4-B OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RPS4B PE=1 SV=1
Length = 261
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 37/63 (58%), Positives = 48/63 (76%)
Query: 4 GNLCMITGGRNLGRVGTVVNRERHPGSFDIVHVKDGNGHVFATRLNNVFIIGKGTKAFCS 63
G L +TGGRNLGR+GT+V++ERH G FD+VH+KD + F TRLNNVF+IG+ K + S
Sbjct: 178 GKLVYVTGGRNLGRIGTIVHKERHDGGFDLVHIKDSLDNTFVTRLNNVFVIGEQGKPYIS 237
Query: 64 KPK 66
PK
Sbjct: 238 LPK 240
>sp|P0CX35|RS4A_YEAST 40S ribosomal protein S4-A OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RPS4A PE=1 SV=1
Length = 261
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 37/63 (58%), Positives = 48/63 (76%)
Query: 4 GNLCMITGGRNLGRVGTVVNRERHPGSFDIVHVKDGNGHVFATRLNNVFIIGKGTKAFCS 63
G L +TGGRNLGR+GT+V++ERH G FD+VH+KD + F TRLNNVF+IG+ K + S
Sbjct: 178 GKLVYVTGGRNLGRIGTIVHKERHDGGFDLVHIKDSLDNTFVTRLNNVFVIGEQGKPYIS 237
Query: 64 KPK 66
PK
Sbjct: 238 LPK 240
>sp|Q9USW5|RS4B_SCHPO 40S ribosomal protein S4-B OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=rps4b PE=1 SV=1
Length = 262
Score = 82.4 bits (202), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 37/60 (61%), Positives = 48/60 (80%)
Query: 7 CMITGGRNLGRVGTVVNRERHPGSFDIVHVKDGNGHVFATRLNNVFIIGKGTKAFCSKPK 66
M+TGGRN+GRVGT+V+RE H GSF+I+HVKD FATRL+NVF+IG+ K++ S PK
Sbjct: 181 VMVTGGRNMGRVGTIVHREHHLGSFEIIHVKDALDREFATRLSNVFVIGEAGKSWISLPK 240
>sp|P87158|RS4A_SCHPO 40S ribosomal protein S4-A OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=rps4a PE=2 SV=2
Length = 262
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 37/60 (61%), Positives = 48/60 (80%)
Query: 7 CMITGGRNLGRVGTVVNRERHPGSFDIVHVKDGNGHVFATRLNNVFIIGKGTKAFCSKPK 66
M+TGGRN+GRVGT+V+RE H GSF+I+HVKD FATRL+NVF+IG+ K++ S PK
Sbjct: 181 VMVTGGRNMGRVGTIVHREHHLGSFEIIHVKDALDREFATRLSNVFVIGETGKSWISLPK 240
>sp|Q9P4W9|RS4C_SCHPO 40S ribosomal protein S4-C OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=rps4c PE=1 SV=1
Length = 262
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 37/60 (61%), Positives = 48/60 (80%)
Query: 7 CMITGGRNLGRVGTVVNRERHPGSFDIVHVKDGNGHVFATRLNNVFIIGKGTKAFCSKPK 66
M+TGGRN+GRVGT+V+RE H GSF+I+HVKD FATRL+NVF+IG+ K++ S PK
Sbjct: 181 VMVTGGRNMGRVGTIVHREHHLGSFEIIHVKDALDREFATRLSNVFVIGETGKSWISLPK 240
>sp|P0C233|RS4_TETTH 40S ribosomal protein S4 OS=Tetrahymena thermophila PE=1 SV=1
Length = 259
Score = 77.8 bits (190), Expect = 2e-14, Method: Composition-based stats.
Identities = 33/62 (53%), Positives = 44/62 (70%)
Query: 4 GNLCMITGGRNLGRVGTVVNRERHPGSFDIVHVKDGNGHVFATRLNNVFIIGKGTKAFCS 63
GN+C I G N+GRVG + + E+H GSFDI HVKD G+ FATRL N+F++G+G K +
Sbjct: 179 GNVCYIQQGNNIGRVGIIQHIEKHQGSFDICHVKDAKGNAFATRLGNIFVLGQGKKLYIE 238
Query: 64 KP 65
P
Sbjct: 239 LP 240
>sp|P47837|RS4_CANAX 40S ribosomal protein S4 OS=Candida albicans GN=RPS4 PE=3 SV=1
Length = 262
Score = 75.1 bits (183), Expect = 1e-13, Method: Composition-based stats.
Identities = 36/64 (56%), Positives = 47/64 (73%), Gaps = 1/64 (1%)
Query: 4 GNLCMITGGRNLGRVGTVVNRERHPGSFDIVHVKDGNGHVFATRLNNVFIIG-KGTKAFC 62
G L M+TGGRNLGRVG +V+RE+ G FD+VH+KD + F TRL+NVF+IG + K +
Sbjct: 178 GRLVMVTGGRNLGRVGVIVHREKLEGGFDLVHIKDALENTFVTRLSNVFVIGTEAGKPWV 237
Query: 63 SKPK 66
S PK
Sbjct: 238 SLPK 241
>sp|P55832|RS4_HORSE 40S ribosomal protein S4 (Fragment) OS=Equus caballus GN=RPS4 PE=2
SV=1
Length = 194
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 28/36 (77%), Positives = 32/36 (88%)
Query: 4 GNLCMITGGRNLGRVGTVVNRERHPGSFDIVHVKDG 39
GNLCM+TGG NLGR+G + NRERHPGSFD+VHVKD
Sbjct: 159 GNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDA 194
>sp|A3DNB9|RS4E_STAMF 30S ribosomal protein S4e OS=Staphylothermus marinus (strain ATCC
43588 / DSM 3639 / F1) GN=rps4e PE=3 SV=1
Length = 252
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 27/57 (47%), Positives = 35/57 (61%), Gaps = 7/57 (12%)
Query: 4 GNLCMITGGRNLGRVGTVVN----RERHPGSFDIVHVKDGNGHVFATRLNNVFIIGK 56
G L +I+GGRN+GRVG VV+ RH IV ++D +G+ F T L VF IGK
Sbjct: 187 GTLVIISGGRNVGRVGKVVSIHKGIRRHR---SIVTIEDKHGNKFQTSLTYVFPIGK 240
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.142 0.454
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,240,436
Number of Sequences: 539616
Number of extensions: 1272437
Number of successful extensions: 2470
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 2404
Number of HSP's gapped (non-prelim): 83
length of query: 81
length of database: 191,569,459
effective HSP length: 52
effective length of query: 29
effective length of database: 163,509,427
effective search space: 4741773383
effective search space used: 4741773383
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)