Query psy1800
Match_columns 81
No_of_seqs 101 out of 276
Neff 4.9
Searched_HMMs 29240
Date Fri Aug 16 19:44:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1800.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1800hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iz6_D 40S ribosomal protein S 100.0 2.6E-33 8.9E-38 209.2 8.1 74 1-74 175-248 (265)
2 3u5c_E RP5, S7, YS6, 40S ribos 100.0 2.2E-33 7.6E-38 209.2 4.6 74 1-74 175-248 (261)
3 2xzm_W 40S ribosomal protein S 100.0 5.1E-32 1.7E-36 201.8 8.0 74 1-74 177-250 (260)
4 3j20_E 30S ribosomal protein S 99.9 3.8E-28 1.3E-32 179.5 6.5 64 1-65 179-243 (243)
5 3kbg_A 30S ribosomal protein S 99.9 2.2E-24 7.5E-29 156.9 6.0 65 1-70 139-204 (213)
6 2do3_A Transcription elongatio 96.5 0.011 3.7E-07 36.2 6.3 46 1-50 18-63 (69)
7 1vq8_T 50S ribosomal protein L 93.2 0.2 6.8E-06 33.2 5.3 51 2-55 44-101 (120)
8 3v2d_Y 50S ribosomal protein L 92.1 0.95 3.2E-05 29.4 7.5 76 1-79 7-105 (110)
9 1nz9_A Transcription antitermi 91.6 0.67 2.3E-05 26.0 5.6 27 1-27 5-31 (58)
10 2zkr_t 60S ribosomal protein L 91.1 0.26 9E-06 33.6 4.1 52 1-55 49-108 (145)
11 2ckk_A KIN17; beta barrel, rib 90.5 0.28 9.7E-06 32.3 3.7 25 2-26 72-96 (127)
12 2ftc_N Mitochondrial ribosomal 90.1 0.48 1.6E-05 30.1 4.4 71 4-77 1-93 (96)
13 3r8s_U 50S ribosomal protein L 89.6 0.6 2.1E-05 30.0 4.7 72 1-76 4-98 (102)
14 3j21_U 50S ribosomal protein L 89.1 0.47 1.6E-05 31.4 3.9 35 1-38 46-80 (121)
15 2zjr_R 50S ribosomal protein L 88.9 0.46 1.6E-05 31.1 3.8 74 1-77 16-111 (115)
16 4a18_F RPL14; ribosome, eukary 85.7 0.62 2.1E-05 31.1 3.0 31 2-36 8-38 (126)
17 3iz5_N 60S ribosomal protein L 85.6 0.56 1.9E-05 31.6 2.7 27 1-27 7-33 (134)
18 3u5e_Y L33, YL33, 60S ribosoma 83.8 1.8 6.1E-05 28.9 4.6 34 2-38 51-84 (127)
19 3iz5_Y 60S ribosomal protein L 83.6 1.7 5.9E-05 29.8 4.5 51 2-55 50-107 (150)
20 4a17_S RPL26, 60S ribosomal pr 83.4 2.1 7E-05 28.9 4.8 34 2-38 50-83 (135)
21 2e6z_A Transcription elongatio 83.1 0.68 2.3E-05 26.5 2.0 25 1-25 8-32 (59)
22 3izc_N 60S ribosomal protein R 82.4 0.96 3.3E-05 30.6 2.8 32 1-36 15-46 (138)
23 3j21_5 50S ribosomal protein L 81.9 0.92 3.1E-05 28.0 2.4 26 1-26 4-29 (83)
24 4a18_N RPL27, ribosomal protei 81.3 1.4 4.9E-05 30.0 3.4 27 1-27 5-31 (144)
25 2joy_A 50S ribosomal protein L 80.4 1.2 4.2E-05 27.9 2.7 25 1-25 4-28 (96)
26 3p8b_B Transcription antitermi 77.4 2.3 7.9E-05 27.8 3.4 36 1-37 92-127 (152)
27 1mkh_A Metrs;, C-terminal doma 71.1 6 0.00021 25.0 4.1 26 17-42 14-39 (107)
28 2jvv_A Transcription antitermi 69.9 4.2 0.00014 27.2 3.3 27 1-27 128-154 (181)
29 2cwp_A Metrs related protein; 69.7 7.2 0.00025 24.8 4.3 26 17-42 18-43 (112)
30 1pyb_A Methionyl-tRNA syntheta 66.4 6.4 0.00022 25.0 3.5 26 17-42 18-43 (111)
31 1pxf_A Hypothetical protein YG 60.9 8 0.00027 24.6 3.2 17 17-33 15-31 (111)
32 3ers_X TRNA-binding protein YG 58.5 12 0.00041 24.1 3.7 21 17-37 15-35 (118)
33 1gd7_A CSAA protein; oligonucl 58.3 13 0.00043 23.5 3.8 17 17-33 13-29 (109)
34 2nzh_A Protein CSAA; beta barr 57.5 12 0.0004 23.8 3.6 17 17-33 16-32 (113)
35 3g48_A Chaperone CSAA; structu 56.1 14 0.00047 23.6 3.7 21 17-37 16-37 (112)
36 2q2i_A AGR_C_4014P, secretion 54.4 13 0.00045 23.7 3.4 17 17-33 19-35 (116)
37 3bbo_W Ribosomal protein L24; 53.6 1.8 6.2E-05 30.7 -0.9 26 2-27 70-95 (191)
38 2ftc_B Mitochondrial ribosomal 53.1 33 0.0011 22.7 5.3 49 20-77 67-116 (136)
39 3fuy_A HFX_CASS1, putative int 48.9 9.8 0.00034 26.0 2.2 22 30-56 31-52 (179)
40 2q2h_A AGR_C_4014P, secretion 48.2 19 0.00064 23.6 3.4 17 17-33 34-50 (131)
41 3iz5_B 60S ribosomal protein L 45.7 25 0.00085 25.9 4.1 38 16-53 40-78 (261)
42 2xhc_A Transcription antitermi 44.8 19 0.00065 27.1 3.4 27 1-27 299-325 (352)
43 3bu2_A Putative tRNA-binding p 43.7 32 0.0011 24.1 4.2 21 17-37 94-114 (199)
44 1giy_D 50S ribosomal protein L 43.1 51 0.0017 22.8 5.2 48 20-77 80-129 (178)
45 2qf4_A Cell shape determining 41.6 29 0.001 23.1 3.7 37 17-56 129-166 (172)
46 1ntg_A Tyrrs, tyrosyl-tRNA syn 41.0 28 0.00095 23.8 3.5 20 17-36 13-32 (172)
47 2j5u_A MREC protein; bacterial 37.5 46 0.0016 23.6 4.3 37 17-56 190-227 (255)
48 3mxn_B RECQ-mediated genome in 37.4 14 0.00049 25.2 1.6 12 1-12 99-110 (150)
49 4a18_E RPL6; ribosome, eukaryo 37.2 33 0.0011 24.2 3.5 24 1-24 45-68 (191)
50 1fl0_A Endothelial-monocyte ac 36.8 31 0.0011 23.5 3.3 21 17-37 9-29 (171)
51 1i2k_A 4-amino-4-deoxychorisma 36.7 47 0.0016 23.0 4.2 37 32-70 160-196 (269)
52 3lul_A 4-amino-4-deoxychorisma 36.1 44 0.0015 23.4 4.1 37 32-70 161-197 (272)
53 2e8g_A Hypothetical protein PH 36.0 44 0.0015 24.2 4.0 20 17-36 139-158 (241)
54 3g66_A Sortase C; pilus, trans 34.4 70 0.0024 22.2 4.8 47 30-77 131-177 (212)
55 1iye_A Branched-chain amino ac 34.2 48 0.0016 23.4 4.0 37 32-70 181-217 (309)
56 3f1f_4 50S ribosomal protein L 33.6 9.3 0.00032 24.4 0.1 39 10-49 15-53 (97)
57 3v2d_4 50S ribosomal protein L 33.4 43 0.0015 20.0 3.1 22 27-49 6-27 (71)
58 3csw_A BCAT, putative branched 32.1 58 0.002 23.0 4.1 38 31-70 162-199 (285)
59 2xpf_A 4-amino-4-deoxychorisma 31.9 75 0.0026 22.4 4.7 38 31-70 180-217 (292)
60 1m1h_A Transcription antitermi 30.9 10 0.00035 27.2 0.0 27 1-27 195-221 (248)
61 3qqm_A MLR3007 protein; struct 30.3 79 0.0027 21.4 4.5 39 31-70 137-175 (221)
62 4a17_A RPL8; eukaryotic riboso 30.2 55 0.0019 24.1 3.8 37 16-52 41-78 (264)
63 1nkw_Y 50S ribosomal protein L 29.9 36 0.0012 20.4 2.3 23 26-49 5-27 (73)
64 4g1h_A Sortase family protein; 27.6 1.2E+02 0.0042 21.0 5.1 47 30-77 132-178 (215)
65 3izc_a 60S ribosomal protein R 27.1 6.3 0.00022 26.6 -1.6 24 1-24 5-28 (136)
66 3daa_A D-amino acid aminotrans 26.9 72 0.0025 22.4 3.9 39 28-70 162-200 (277)
67 2e70_A Transcription elongatio 26.4 77 0.0026 18.9 3.4 23 3-25 20-42 (71)
68 3o0p_A Sortase family protein; 25.6 1.6E+02 0.0055 20.5 5.5 47 30-77 136-182 (216)
69 1ci3_M Protein (cytochrome F); 23.7 1.7E+02 0.0057 21.5 5.3 27 18-44 177-203 (249)
70 3iz5_a 60S ribosomal protein L 22.5 8.8 0.0003 25.9 -1.6 24 1-24 5-28 (136)
71 3sno_A Hypothetical aminotrans 21.4 98 0.0034 22.3 3.8 38 30-70 204-241 (315)
72 2y9a_D Small nuclear ribonucle 21.1 1.3E+02 0.0046 19.2 4.0 49 16-67 27-76 (126)
No 1
>3iz6_D 40S ribosomal protein S4 (S4E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=2.6e-33 Score=209.15 Aligned_cols=74 Identities=54% Similarity=0.867 Sum_probs=67.2
Q ss_pred CCCCcEEEEECCCCcceEEEEEEEEEecCCCcEEEEEcCCCCEEEEeeccEEEEecCCcceEecCCCceeeeee
Q psy1800 1 MFPGNLCMITGGRNLGRVGTVVNRERHPGSFDIVHVKDGNGHVFATRLNNVFIIGKGTKAFCSKPKRNFVSPRQ 74 (81)
Q Consensus 1 fe~G~~~mVtgG~n~GrvG~I~~ie~~~g~~~iV~ikd~~g~~F~T~~~nVfvIGk~~kp~IsLp~~kgi~~~~ 74 (81)
||+||+||||||+|+||+|+|++|++|+|+||+||++|++|++|+|+++||||||++++||||||++|||||++
T Consensus 175 fe~Gnl~mvtgG~n~GriG~I~~ie~~~gs~~iV~vkd~~g~~F~T~~~nvfvIGk~~kp~IsLp~~kg~~~~~ 248 (265)
T 3iz6_D 175 FDVGNVVMVTGGRNTGRVGVIKNREKHKGSFETIHVEDALGHQFATRLGNVFTIGKGNKPWVSLPKGKGIKLSI 248 (265)
T ss_dssp CSTTCEEEECSSSSCSCEEEEEEEECCSSSCCEEEECCCSSCCEEEEGGGEEEEECSSCCCCCCCCCC------
T ss_pred ccCCCEEEEEcCCcceEEEEEEEEEEecCCCcEEEEEECCCCeEEEEeCeEEEEccCCCeeEeCCCCCceeeeh
Confidence 89999999999999999999999999999999999999999999999999999999889999999999999875
No 2
>3u5c_E RP5, S7, YS6, 40S ribosomal protein S4-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_D 3u5g_E
Probab=99.97 E-value=2.2e-33 Score=209.17 Aligned_cols=74 Identities=50% Similarity=0.851 Sum_probs=72.2
Q ss_pred CCCCcEEEEECCCCcceEEEEEEEEEecCCCcEEEEEcCCCCEEEEeeccEEEEecCCcceEecCCCceeeeee
Q psy1800 1 MFPGNLCMITGGRNLGRVGTVVNRERHPGSFDIVHVKDGNGHVFATRLNNVFIIGKGTKAFCSKPKRNFVSPRQ 74 (81)
Q Consensus 1 fe~G~~~mVtgG~n~GrvG~I~~ie~~~g~~~iV~ikd~~g~~F~T~~~nVfvIGk~~kp~IsLp~~kgi~~~~ 74 (81)
||+||+||||||+|+||+|+|++|++|+|+||+||++|++|++|+|+++||||||++++||||||++|||||++
T Consensus 175 fe~Gnl~mvtgG~n~GriG~I~~ie~~~gs~~iV~vkd~~g~~F~T~~~nvfvIGk~~kp~IsLp~~kg~~~~~ 248 (261)
T 3u5c_E 175 FDAGKLVYVTGGRNLGRIGTIVHKERHDGGFDLVHIKDSLDNTFVTRLNNVFVIGEQGKPYISLPKGKGIKLSI 248 (261)
T ss_dssp CCSSCCEEECSSTTTTCBCCCCEEECCTTSCCEEEEECTTSCEEEEEGGGEEECCSSSCCSSCCCTTTTCCCCH
T ss_pred ccCCCEEEEEcCCcceEEEEEEEEEEecCCCcEEEEEECCCCeEEEEeCeEEEEccCCCeeEeCCCCCceeeeh
Confidence 89999999999999999999999999999999999999999999999999999999889999999999999874
No 3
>2xzm_W 40S ribosomal protein S4; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_W
Probab=99.97 E-value=5.1e-32 Score=201.75 Aligned_cols=74 Identities=46% Similarity=0.848 Sum_probs=71.9
Q ss_pred CCCCcEEEEECCCCcceEEEEEEEEEecCCCcEEEEEcCCCCEEEEeeccEEEEecCCcceEecCCCceeeeee
Q psy1800 1 MFPGNLCMITGGRNLGRVGTVVNRERHPGSFDIVHVKDGNGHVFATRLNNVFIIGKGTKAFCSKPKRNFVSPRQ 74 (81)
Q Consensus 1 fe~G~~~mVtgG~n~GrvG~I~~ie~~~g~~~iV~ikd~~g~~F~T~~~nVfvIGk~~kp~IsLp~~kgi~~~~ 74 (81)
|++||+||||||+|+||+|+|+++++|++++|+||++|++|++|+|+++||||||++++||||||++||||||+
T Consensus 177 fe~G~l~mvtgG~n~GriG~I~~~e~~~gs~~iV~vkd~~g~~F~T~~~~vfvIG~~~kp~Islp~~kgi~l~i 250 (260)
T 2xzm_W 177 LESGNVCYIQQGNNIGRVGIIQHIEKHQGSFDICHVKDAKGNAFATRLGNIFVLGQGKKSWIELPSGDGVRETI 250 (260)
T ss_dssp CCSSCEEEECSSTTTTCEEEEEEEECCCSSCCEEEEECTTCCCEEEEGGGEEEEESTTCCSSCCSSSSSCCCCH
T ss_pred ecCCCEEEEECCccceeEEEEEEEEecCCCCcEEEEEeCCCCeEEEEEeeEEEECCCCceeEecCCCCCeecch
Confidence 79999999999999999999999999999999999999999999999999999999779999999999999875
No 4
>3j20_E 30S ribosomal protein S4E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=99.95 E-value=3.8e-28 Score=179.47 Aligned_cols=64 Identities=31% Similarity=0.552 Sum_probs=62.7
Q ss_pred CCCCcEEEEECCCCcceEEEEEEEEEecCC-CcEEEEEcCCCCEEEEeeccEEEEecCCcceEecC
Q psy1800 1 MFPGNLCMITGGRNLGRVGTVVNRERHPGS-FDIVHVKDGNGHVFATRLNNVFIIGKGTKAFCSKP 65 (81)
Q Consensus 1 fe~G~~~mVtgG~n~GrvG~I~~ie~~~g~-~~iV~ikd~~g~~F~T~~~nVfvIGk~~kp~IsLp 65 (81)
||+||+||||||+|+||+|+|++|++|+|+ ||+||++|++|++|+|+++||||||+ ++||||||
T Consensus 179 f~~G~l~mvtgG~n~GriG~I~~ie~~~gs~~~~V~v~d~~g~~F~T~~~~vfvIGk-~kp~islp 243 (243)
T 3j20_E 179 FEKGAYVFVTQGKNVARKGRIVEIKRFPMGWPDVVTIEDEEGELFDTLKEYAFVVGT-DKPKISLP 243 (243)
T ss_dssp CCTTCEEEECSSSSTTCEEEEEECCCCCSSSCCEEEEEESSCCCEEEETTTEEEEES-SCSCCSCC
T ss_pred ccCCCEEEEECCccceEEEEEEEEEEecCCCceEEEEEcCCCCEEEEEeceEEEECC-CCccccCC
Confidence 899999999999999999999999999995 99999999999999999999999999 99999998
No 5
>3kbg_A 30S ribosomal protein S4E; RPS4E, RS4E_theac, TAR28, NESG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.75A {Thermoplasma acidophilum}
Probab=99.90 E-value=2.2e-24 Score=156.93 Aligned_cols=65 Identities=32% Similarity=0.522 Sum_probs=54.9
Q ss_pred CCCCcEEEEECCCCcceEEEEEEEEEecCC-CcEEEEEcCCCCEEEEeeccEEEEecCCcceEecCCCcee
Q psy1800 1 MFPGNLCMITGGRNLGRVGTVVNRERHPGS-FDIVHVKDGNGHVFATRLNNVFIIGKGTKAFCSKPKRNFV 70 (81)
Q Consensus 1 fe~G~~~mVtgG~n~GrvG~I~~ie~~~g~-~~iV~ikd~~g~~F~T~~~nVfvIGk~~kp~IsLp~~kgi 70 (81)
|++||+||||||+|+||+|+|++|++|+|| +|+|+++ ++|+|+++||||||+ ++|||.+|.+.=|
T Consensus 139 f~~G~l~mvtgG~n~GriG~I~~ie~~~gs~~~iV~v~----~~F~T~~~~vfvIGk-~~p~i~~~p~~~~ 204 (213)
T 3kbg_A 139 MQPGNKAYITAGSHVNQTGTISKIEAKEGSSANLVHFQ----EGFSTIKDHVFMIGS-SKFSFVLSPEEVI 204 (213)
T ss_dssp CSTTCEEEECSSTTTTCEEEEEEECCCSCC--CEEEET----TTEEEEGGGEEEEEC-SSCBCC-------
T ss_pred cCCCCEEEEECCCcceEEEEEEEEEEccCCCCCEEEEE----EEEEeeeceEEEEcC-CCccEEeChHHcc
Confidence 899999999999999999999999999997 7999998 679999999999999 7999987766544
No 6
>2do3_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.5.5
Probab=96.49 E-value=0.011 Score=36.15 Aligned_cols=46 Identities=20% Similarity=0.205 Sum_probs=35.8
Q ss_pred CCCCcEEEEECCCCcceEEEEEEEEEecCCCcEEEEEcCCCCEEEEeecc
Q psy1800 1 MFPGNLCMITGGRNLGRVGTVVNRERHPGSFDIVHVKDGNGHVFATRLNN 50 (81)
Q Consensus 1 fe~G~~~mVtgG~n~GrvG~I~~ie~~~g~~~iV~ikd~~g~~F~T~~~n 50 (81)
|++|+-+-|++|+|.|..|.|.+++. .-++.+-|...+++.-...+
T Consensus 18 F~~GDHVkVi~G~~~getGlVV~v~~----d~v~v~SD~t~~Ei~V~~~d 63 (69)
T 2do3_A 18 FKMGDHVKVIAGRFEGDTGLIVRVEE----NFVILFSDLTMHELKVLPRD 63 (69)
T ss_dssp CCTTCEEEESSSTTTTCEEEEEEECS----SCEEEEESSSCSEEEECTTS
T ss_pred ccCCCeEEEeccEEcCceEEEEEEeC----CEEEEEeCCCCCEEEEEhHH
Confidence 89999999999999999999999973 24556667776666544443
No 7
>1vq8_T 50S ribosomal protein L24P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_T* 1vq5_T* 1vq6_T* 1vq7_T* 1s72_T* 1vq9_T* 1vqk_T* 1vql_T* 1vqm_T* 1vqn_T* 1vqo_T* 1vqp_T* 1yhq_T* 1yi2_T* 1yij_T* 1yit_T* 1yj9_T* 1yjn_T* 1yjw_T* 2otj_T* ...
Probab=93.16 E-value=0.2 Score=33.19 Aligned_cols=51 Identities=24% Similarity=0.357 Sum_probs=36.8
Q ss_pred CCCcEEEEECCCCcceEEEEEEEEEecCCCcEEEEEcC-----CCCEEEE--eeccEEEEe
Q psy1800 2 FPGNLCMITGGRNLGRVGTVVNRERHPGSFDIVHVKDG-----NGHVFAT--RLNNVFIIG 55 (81)
Q Consensus 2 e~G~~~mVtgG~n~GrvG~I~~ie~~~g~~~iV~ikd~-----~g~~F~T--~~~nVfvIG 55 (81)
..|+.++|+.|+.-|..|+|..+.. ..+.|+|+.- +|.+++- ..+||+++-
T Consensus 44 kkGD~V~Vi~G~dKGk~GkV~~V~~---k~~~V~VEgvn~kK~~Gg~~e~pIh~SNV~i~~ 101 (120)
T 1vq8_T 44 NAGDTVEVLRGDFAGEEGEVINVDL---DKAVIHVEDVTLEKTDGEEVPRPLDTSNVRVTD 101 (120)
T ss_dssp CTTCEEEECSSTTTTCEEEEEEEET---TTTEEEETTCEEECSSSCEEECCBCGGGEEEEE
T ss_pred cCCCEEEEEecCCCCCEEEEEEEEC---CCCEEEEeCeEeEcCCCCEEEeeechHHEEEEe
Confidence 5799999999999999999999863 3457777665 2333332 256777664
No 8
>3v2d_Y 50S ribosomal protein L24; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_S 2hgj_X 2hgq_X 2hgu_X 1vsa_S 2j03_Y 2jl6_Y 2jl8_Y 2v47_Y 2v49_Y 2wdi_Y 2wdj_Y 2wdl_Y 2wdn_Y 2wh2_Y 2wh4_Y 2wrj_Y 2wrl_Y 2wro_Y 2wrr_Y ...
Probab=92.11 E-value=0.95 Score=29.41 Aligned_cols=76 Identities=18% Similarity=0.139 Sum_probs=50.0
Q ss_pred CCCCcEEEEECCCCcceEEEEEEEEEecCCCcEEEEEc--------------CCCC----EEEEeeccEEEEe-cCCcc-
Q psy1800 1 MFPGNLCMITGGRNLGRVGTVVNRERHPGSFDIVHVKD--------------GNGH----VFATRLNNVFIIG-KGTKA- 60 (81)
Q Consensus 1 fe~G~~~mVtgG~n~GrvG~I~~ie~~~g~~~iV~ikd--------------~~g~----~F~T~~~nVfvIG-k~~kp- 60 (81)
+..|+.+.|+.|+.-|..|+|.++.+. .+.|+++. .+|. +.--..|||+.+- +..+|
T Consensus 7 IkkGD~V~Vi~GkdKGk~GkV~~V~~~---~~~ViVEGvN~~kkh~kp~~~~~~Ggi~~~E~PIh~SNV~lv~p~~~k~t 83 (110)
T 3v2d_Y 7 VKKGDTVLVASGKYKGRVGKVKEVLPK---KYAVIVEGVNIVKKAVRVSPKYPQGGFIEKEAPLHASKVRPICPACGKPT 83 (110)
T ss_dssp CCTTSEEEECSSTTTTCEEEEEEEEGG---GTEEEETTSSEEEEECCSSSSSTTCCEEEEECCEEGGGEEEBCTTTCSBC
T ss_pred cCCCCEEEEeEcCCCCeEeEEEEEECC---CCEEEEeCEEEEEEEeCCCccCCCCCEEEEECCcCHHHeEEEcCcCCCcc
Confidence 357999999999999999999998654 23444432 2341 2233448999985 22344
Q ss_pred --eEe-cCCCceeeeeeeeccc
Q psy1800 61 --FCS-KPKRNFVSPRQTCPTI 79 (81)
Q Consensus 61 --~Is-Lp~~kgi~~~~~~~~~ 79 (81)
-+. +..++-+|.+-.|-.+
T Consensus 84 Rvg~~~~edG~kvRv~kk~g~~ 105 (110)
T 3v2d_Y 84 RVRKKFLENGKKIRVCAKCGGA 105 (110)
T ss_dssp CEEEEECSSCCEEEEESSSCCB
T ss_pred EEEEEECCCCcEEEEEecCCCc
Confidence 233 4677788887776543
No 9
>1nz9_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: b.34.5.4
Probab=91.56 E-value=0.67 Score=25.97 Aligned_cols=27 Identities=19% Similarity=0.207 Sum_probs=24.5
Q ss_pred CCCCcEEEEECCCCcceEEEEEEEEEe
Q psy1800 1 MFPGNLCMITGGRNLGRVGTVVNRERH 27 (81)
Q Consensus 1 fe~G~~~mVtgG~n~GrvG~I~~ie~~ 27 (81)
|++|+.+.|+.|.-.|..|+|.++..+
T Consensus 5 ~~~Gd~V~V~~Gpf~g~~g~v~~v~~~ 31 (58)
T 1nz9_A 5 FREGDQVRVVSGPFADFTGTVTEINPE 31 (58)
T ss_dssp CCTTCEEEECSGGGTTCEEEEEEEETT
T ss_pred cCCCCEEEEeecCCCCcEEEEEEEcCC
Confidence 679999999999999999999999643
No 10
>2zkr_t 60S ribosomal protein L26; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=91.09 E-value=0.26 Score=33.59 Aligned_cols=52 Identities=17% Similarity=0.220 Sum_probs=36.4
Q ss_pred CCCCcEEEEECCCCcceE-EEEEEEEEecCCCcEEEEEcCC-----CCEEE--EeeccEEEEe
Q psy1800 1 MFPGNLCMITGGRNLGRV-GTVVNRERHPGSFDIVHVKDGN-----GHVFA--TRLNNVFIIG 55 (81)
Q Consensus 1 fe~G~~~mVtgG~n~Grv-G~I~~ie~~~g~~~iV~ikd~~-----g~~F~--T~~~nVfvIG 55 (81)
+..|+.+.|+.|+.-|.. |+|..+.. ..+.|+|+.-+ |...+ -..+||+++-
T Consensus 49 IkkGD~V~Vi~GkdKGk~~GkV~~V~~---k~~~V~VEgvn~~Kp~G~~~e~PIh~SNV~lv~ 108 (145)
T 2zkr_t 49 IRKDDEVQVVRGHYKGQQIGKVVQVYR---KKYVIYIERVQREKANGTTVHVGIHPSKVVITR 108 (145)
T ss_dssp CCTTCEEEECSSTTTTCCSEEEEEEET---TTTEEEETTCEEECSSCCEEECCBCGGGEEECC
T ss_pred cCCCCEEEEeecCCCCcceeEEEEEEC---CCCEEEEeeeEeEcCCCceEEeccCHHHEEEEc
Confidence 357999999999999999 99999863 34567776544 32222 1256777764
No 11
>2ckk_A KIN17; beta barrel, ribosomal protein, ribonucleoprotein, nuclear protein; 1.45A {Homo sapiens}
Probab=90.47 E-value=0.28 Score=32.32 Aligned_cols=25 Identities=24% Similarity=0.404 Sum_probs=22.8
Q ss_pred CCCcEEEEECCCCcceEEEEEEEEE
Q psy1800 2 FPGNLCMITGGRNLGRVGTVVNRER 26 (81)
Q Consensus 2 e~G~~~mVtgG~n~GrvG~I~~ie~ 26 (81)
+.|+.+||..|++.|..|++.++..
T Consensus 72 ~~g~~V~Iv~G~~rG~~g~L~~id~ 96 (127)
T 2ckk_A 72 APGKRILVLNGGYRGNEGTLESINE 96 (127)
T ss_dssp CTTCEEEECSSTTTTCEEEEEEEEG
T ss_pred CCCCEEEEEecccCCcEEEEEEEeC
Confidence 4699999999999999999999964
No 12
>2ftc_N Mitochondrial ribosomal protein L24; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_N
Probab=90.09 E-value=0.48 Score=30.10 Aligned_cols=71 Identities=21% Similarity=0.203 Sum_probs=45.1
Q ss_pred CcEEEEECCCCcceEEEEEEEEEecCCCcEEEEEcC-------------CCCEE---EE-eeccEEEEe-cCCcce---E
Q psy1800 4 GNLCMITGGRNLGRVGTVVNRERHPGSFDIVHVKDG-------------NGHVF---AT-RLNNVFIIG-KGTKAF---C 62 (81)
Q Consensus 4 G~~~mVtgG~n~GrvG~I~~ie~~~g~~~iV~ikd~-------------~g~~F---~T-~~~nVfvIG-k~~kp~---I 62 (81)
|+.++|+.|++-|..|+|.++.+. .+.|+++.- +|... +. ..|||+.+- +..+|. +
T Consensus 1 GD~V~Vi~GkdKGk~GkV~~V~~~---~~~ViVeGvN~~kkh~kp~~~~~Ggiv~~e~pIh~SNV~lv~p~~~k~tRvg~ 77 (96)
T 2ftc_N 1 GDTVEILEGKDAGKQGKVVQVIRQ---RNWVVVGGLNTHYRYIGKTMDYRGTMIPSEAPLLHRQVKLVDPMDRKPTEIEW 77 (96)
T ss_pred CCEEEEeEcCCCCcEEEEEEEECC---CCEEEEeCCEEEEEEcCCCCCCCCCEEEEecCcCHHHEEEEeCcCCCceEEEE
Confidence 789999999999999999998643 344555432 23211 22 268999885 223332 2
Q ss_pred ec-CCCceeeeeeeec
Q psy1800 63 SK-PKRNFVSPRQTCP 77 (81)
Q Consensus 63 sL-p~~kgi~~~~~~~ 77 (81)
.+ ..++-+|.+-.|-
T Consensus 78 ~~~~dg~kvR~~kk~g 93 (96)
T 2ftc_N 78 RFTEAGERVRVSTRSG 93 (96)
T ss_pred EEccCCcEEEEEeccC
Confidence 33 5567777776664
No 13
>3r8s_U 50S ribosomal protein L24; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 2j28_U* 3fik_U 3j19_U 2wwq_U 3oat_U* 3oas_U* 3ofd_U 3ofc_U 3ofr_U* 3ofz_U* 3og0_U 3ofq_U 3r8t_U 3i1n_U 1vs8_U 1vs6_U 1vt2_U 3i1p_U 3i1r_U 3i1t_U ...
Probab=89.64 E-value=0.6 Score=29.95 Aligned_cols=72 Identities=21% Similarity=0.093 Sum_probs=47.0
Q ss_pred CCCCcEEEEECCCCcceEEEEEEEEEecCCCcEEEEEcCCCC--------------E-----EEEeeccEEEEec-CCcc
Q psy1800 1 MFPGNLCMITGGRNLGRVGTVVNRERHPGSFDIVHVKDGNGH--------------V-----FATRLNNVFIIGK-GTKA 60 (81)
Q Consensus 1 fe~G~~~mVtgG~n~GrvG~I~~ie~~~g~~~iV~ikd~~g~--------------~-----F~T~~~nVfvIGk-~~kp 60 (81)
+..|+.++|+.|+.-|..|+|.++.+. +.|+++.-+=. . .--..|||+.+-. ..+|
T Consensus 4 IkkGD~V~Vi~GkdKGk~GkV~~V~~~----~~ViVeGvN~~kkh~kp~~~~~~~Ggi~~~E~PIh~SNV~lv~p~~~k~ 79 (102)
T 3r8s_U 4 IRRDDEVIVLTGKDKGKRGKVKNVLSS----GKVIVEGINLVKKHQKPVPALNQPGGIVEKEAAIQVSNVAIFNAATGKA 79 (102)
T ss_dssp SCSSCEEEECSSSSTTCEEEEEEEETT----TEEEETTCSEEEEEECCCSSSSCSCEEEEEECCEEGGGEEEEETTTTEE
T ss_pred ccCCCEEEEeEcCCCCeeeEEEEEEeC----CEEEEeCeEEEEeccccCcccCCCCCEEEEECCcCHHHEEEEcCcCCCc
Confidence 357999999999999999999998642 56666543210 0 2223489998863 2344
Q ss_pred ---eEecCCCceeeeeeee
Q psy1800 61 ---FCSKPKRNFVSPRQTC 76 (81)
Q Consensus 61 ---~IsLp~~kgi~~~~~~ 76 (81)
-+.+..++-+|.+-.|
T Consensus 80 trvg~~~edG~kvRv~k~~ 98 (102)
T 3r8s_U 80 DRVGFRFEDGKKVRFFKSN 98 (102)
T ss_dssp ECEEEEEETTEEEEEETTT
T ss_pred eEEEEEeCCCeEEEEEeec
Confidence 1335666667766555
No 14
>3j21_U 50S ribosomal protein L24P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=89.05 E-value=0.47 Score=31.37 Aligned_cols=35 Identities=23% Similarity=0.219 Sum_probs=28.5
Q ss_pred CCCCcEEEEECCCCcceEEEEEEEEEecCCCcEEEEEc
Q psy1800 1 MFPGNLCMITGGRNLGRVGTVVNRERHPGSFDIVHVKD 38 (81)
Q Consensus 1 fe~G~~~mVtgG~n~GrvG~I~~ie~~~g~~~iV~ikd 38 (81)
+..|+.++|+.|+.-|..|+|.++.+. .+.|+++.
T Consensus 46 IkkGD~V~Vi~GkdKGk~GkV~~V~~k---~~~V~VEg 80 (121)
T 3j21_U 46 VRVGDKVRIMRGDYKGHEGKVVEVDLK---RYRIYVEG 80 (121)
T ss_dssp CCSSSEEEECSSSCSSEEEEEEEEETT---TTEEEETT
T ss_pred cccCCEEEEeecCCCCcEeEEEEEEec---CCEEEEeC
Confidence 357999999999999999999998633 35677764
No 15
>2zjr_R 50S ribosomal protein L24; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.1 PDB: 1nwx_S* 1nwy_S* 1sm1_S* 1xbp_S* 2d3o_S 2zjp_R* 2zjq_R 1nkw_S 3cf5_R* 3dll_R* 3pio_R* 3pip_R* 1pnu_S 1pny_S 1vor_V 1vou_V 1vow_V 1voy_V 1vp0_V
Probab=88.94 E-value=0.46 Score=31.06 Aligned_cols=74 Identities=19% Similarity=0.171 Sum_probs=46.0
Q ss_pred CCCCcEEEEECCCCcceEEEEEEEEEecCCCcEEEEEcCC--------------C----CEEEEeeccEEEEec-CCcc-
Q psy1800 1 MFPGNLCMITGGRNLGRVGTVVNRERHPGSFDIVHVKDGN--------------G----HVFATRLNNVFIIGK-GTKA- 60 (81)
Q Consensus 1 fe~G~~~mVtgG~n~GrvG~I~~ie~~~g~~~iV~ikd~~--------------g----~~F~T~~~nVfvIGk-~~kp- 60 (81)
+..|+.+.|+.|+.-|..|+|.++... .+.|+++.-+ | .+.--..|||+++-. ..+|
T Consensus 16 IkkGD~V~Vi~GkdKGk~GkV~~V~~~---~~~V~VEGvN~~kkh~kp~~~~~~Ggiv~~e~PIh~SNV~lv~p~~~k~t 92 (115)
T 2zjr_R 16 FKKGDTVIVLSGKHKGQTGKVLLALPR---DQKVVVEGVNVITKNVKPSMTNPQGGQEQRELALHASKVALVDPETGKAT 92 (115)
T ss_dssp SCTTSEEECCSSSSTTCEEEEEEEETT---TTEEEESSSCBCCCCCCTTSSSCCCCCCCBCCCBCSSSEECBSSSSBCCC
T ss_pred ccCCCEEEEeEcCCCCcEEEEEEEECC---CCEEEEeCcEeEEEecCCCcCCCCCCEEEEEcccCHHHEEEEeccCCCce
Confidence 357999999999999999999998633 4567776532 2 112223688888742 1222
Q ss_pred --eEecCCCceeeeeeeec
Q psy1800 61 --FCSKPKRNFVSPRQTCP 77 (81)
Q Consensus 61 --~IsLp~~kgi~~~~~~~ 77 (81)
-+.+..++-+|.+-.|-
T Consensus 93 Rvg~~~~dG~kvR~~kk~g 111 (115)
T 2zjr_R 93 RVRKQIVDGKKVRVAVASG 111 (115)
T ss_dssp CCCCCCSCTTSCCCCSSSC
T ss_pred EEEEEEcCCCEEEEEeecC
Confidence 12334455566555543
No 16
>4a18_F RPL14; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_F 4a1b_F 4a1d_F 4adx_7
Probab=85.75 E-value=0.62 Score=31.12 Aligned_cols=31 Identities=19% Similarity=0.357 Sum_probs=26.9
Q ss_pred CCCcEEEEECCCCcceEEEEEEEEEecCCCcEEEE
Q psy1800 2 FPGNLCMITGGRNLGRVGTVVNRERHPGSFDIVHV 36 (81)
Q Consensus 2 e~G~~~mVtgG~n~GrvG~I~~ie~~~g~~~iV~i 36 (81)
|+|-+|++.-|++.|+..+|.+|..+ +.|.+
T Consensus 8 evGRVv~i~~G~~aGklavIVdIID~----nrvLV 38 (126)
T 4a18_F 8 QVGRVVYINYGADKGKLAVIVNIINQ----NRILI 38 (126)
T ss_dssp ETTEEEEECSSTTTTEEEEEEEEETT----TEEEE
T ss_pred ecceEEEEccCCccCCEEEEEEEecC----CeEEE
Confidence 78999999999999999999999754 45555
No 17
>3iz5_N 60S ribosomal protein L14 (L14E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_N
Probab=85.62 E-value=0.56 Score=31.61 Aligned_cols=27 Identities=19% Similarity=0.417 Sum_probs=24.5
Q ss_pred CCCCcEEEEECCCCcceEEEEEEEEEe
Q psy1800 1 MFPGNLCMITGGRNLGRVGTVVNRERH 27 (81)
Q Consensus 1 fe~G~~~mVtgG~n~GrvG~I~~ie~~ 27 (81)
+|+|-+|++..|++.|+..+|.+|..+
T Consensus 7 vevGRVV~i~~Gr~aGk~avIV~iiD~ 33 (134)
T 3iz5_N 7 VEIGRVALVNYGKDYGRLVVIVDVVDQ 33 (134)
T ss_dssp CCSSEEEECSCCSSSCCEEEEEEECSS
T ss_pred cccCeEEEEeeCCCCCCEEEEEEEcCC
Confidence 489999999999999999999999654
No 18
>3u5e_Y L33, YL33, 60S ribosomal protein L26-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_L 2ww9_L 2wwb_L 3o5h_X 3o58_X 3u5i_Y 4b6a_Y 1s1i_U 3izc_Y 3izs_Y 3jyw_U
Probab=83.84 E-value=1.8 Score=28.88 Aligned_cols=34 Identities=18% Similarity=0.196 Sum_probs=27.9
Q ss_pred CCCcEEEEECCCCcceEEEEEEEEEecCCCcEEEEEc
Q psy1800 2 FPGNLCMITGGRNLGRVGTVVNRERHPGSFDIVHVKD 38 (81)
Q Consensus 2 e~G~~~mVtgG~n~GrvG~I~~ie~~~g~~~iV~ikd 38 (81)
..|+.++|+.|+.-|..|+|..+.+. .+.|+|+.
T Consensus 51 kkgD~V~Vi~GkdKGk~GkV~~V~~k---k~~V~VEg 84 (127)
T 3u5e_Y 51 RRDDEVLVVRGSKKGQEGKISSVYRL---KFAVQVDK 84 (127)
T ss_dssp CTTCEEEECSSTTTTCEEEEEEEEGG---GTEEEEET
T ss_pred cCCCEEEEeecCCCCccceEEEEECC---CCEEEEeC
Confidence 46999999999999999999998643 34677765
No 19
>3iz5_Y 60S ribosomal protein L26 (L24P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_Y
Probab=83.60 E-value=1.7 Score=29.77 Aligned_cols=51 Identities=24% Similarity=0.283 Sum_probs=34.7
Q ss_pred CCCcEEEEECCCCcceEEEEEEEEEecCCCcEEEEEc-----CCCCEEE--EeeccEEEEe
Q psy1800 2 FPGNLCMITGGRNLGRVGTVVNRERHPGSFDIVHVKD-----GNGHVFA--TRLNNVFIIG 55 (81)
Q Consensus 2 e~G~~~mVtgG~n~GrvG~I~~ie~~~g~~~iV~ikd-----~~g~~F~--T~~~nVfvIG 55 (81)
..|+.++|+.|+.-|..|+|..+.+. .+.|+|+. .+|...+ -..+||+++-
T Consensus 50 kKGD~V~Vi~GkdKGk~GkVl~V~~k---k~~V~VEGVN~~K~~G~~~eapIh~SNV~i~~ 107 (150)
T 3iz5_Y 50 RKDDEVQVVRGSYKGREGKVVQVYRR---RWVIHVERITREKVNGSTVNVGIHPSKVVVTK 107 (150)
T ss_dssp CSSSEEEECSSTTTTCEEEEEEEETT---TTEEEETTCEEECTTSCEEECCBCGGGEEEEE
T ss_pred CCCCEEEEeecCCCCccceEEEEEcC---CCEEEEeCcEEEeCCCCEEecccchHHEEEEc
Confidence 57999999999999999999998533 34666654 3443222 2235666554
No 20
>4a17_S RPL26, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_S 4a1c_S 4a1e_S
Probab=83.38 E-value=2.1 Score=28.89 Aligned_cols=34 Identities=24% Similarity=0.263 Sum_probs=27.7
Q ss_pred CCCcEEEEECCCCcceEEEEEEEEEecCCCcEEEEEc
Q psy1800 2 FPGNLCMITGGRNLGRVGTVVNRERHPGSFDIVHVKD 38 (81)
Q Consensus 2 e~G~~~mVtgG~n~GrvG~I~~ie~~~g~~~iV~ikd 38 (81)
..|+.++|+.|+.-|..|+|..+.+ ..+.|+|+.
T Consensus 50 kkgD~V~Vi~GkdKGk~GkV~~V~~---kk~~V~VEg 83 (135)
T 4a17_S 50 RKDDEVLIVRGKFKGNKGKVTQVYR---KKWAIHVEK 83 (135)
T ss_dssp CTTCEEEECSSTTTTCEEEEEEEET---TTTEEEETT
T ss_pred cCCCEEEEeecCCCCceeeEEEEEc---CCCEEEEeC
Confidence 4699999999999999999999853 345677764
No 21
>2e6z_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=83.11 E-value=0.68 Score=26.51 Aligned_cols=25 Identities=16% Similarity=0.387 Sum_probs=23.8
Q ss_pred CCCCcEEEEECCCCcceEEEEEEEE
Q psy1800 1 MFPGNLCMITGGRNLGRVGTVVNRE 25 (81)
Q Consensus 1 fe~G~~~mVtgG~n~GrvG~I~~ie 25 (81)
|++|+.+-|+.|.=.|..|+|.+++
T Consensus 8 f~~GD~V~V~~Gpf~g~~G~V~evd 32 (59)
T 2e6z_A 8 FQPGDNVEVCEGELINLQGKILSVD 32 (59)
T ss_dssp CCTTSEEEECSSTTTTCEEEECCCB
T ss_pred CCCCCEEEEeecCCCCCEEEEEEEe
Confidence 7899999999999999999999986
No 22
>3izc_N 60S ribosomal protein RPL14 (L14E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_N 3o58_N 3o5h_N 3u5e_M 3u5i_M 4b6a_M
Probab=82.39 E-value=0.96 Score=30.59 Aligned_cols=32 Identities=19% Similarity=0.382 Sum_probs=27.3
Q ss_pred CCCCcEEEEECCCCcceEEEEEEEEEecCCCcEEEE
Q psy1800 1 MFPGNLCMITGGRNLGRVGTVVNRERHPGSFDIVHV 36 (81)
Q Consensus 1 fe~G~~~mVtgG~n~GrvG~I~~ie~~~g~~~iV~i 36 (81)
+++|-+|++.-|++.|+..+|.+|..+ +.|.|
T Consensus 15 ve~GrVV~i~~Gr~aGk~avIV~iiD~----~rVLV 46 (138)
T 3izc_N 15 VEVGRVVLIKKGQSAGKLAAIVEIIDQ----KKVLI 46 (138)
T ss_dssp SSTTEEEECCSCSSSCCEEEEEEECSS----SEEEE
T ss_pred cccCeEEEEeeCCCCCCEEEEEEEecC----CEEEE
Confidence 479999999999999999999999654 55655
No 23
>3j21_5 50S ribosomal protein L14E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=81.88 E-value=0.92 Score=27.98 Aligned_cols=26 Identities=23% Similarity=0.362 Sum_probs=23.3
Q ss_pred CCCCcEEEEECCCCcceEEEEEEEEE
Q psy1800 1 MFPGNLCMITGGRNLGRVGTVVNRER 26 (81)
Q Consensus 1 fe~G~~~mVtgG~n~GrvG~I~~ie~ 26 (81)
+++|.+|++..|+..|+..+|.++..
T Consensus 4 ~~~Grvv~~~~Gr~~Gk~~vIv~iiD 29 (83)
T 3j21_5 4 IDVGRIAVVIAGRRAGQKVVVVDIID 29 (83)
T ss_dssp CCTTEEEECSSSSSSCCCEEEEEECS
T ss_pred cccCEEEEEeecCCCCCEEEEEEEcC
Confidence 58999999999999999999998743
No 24
>4a18_N RPL27, ribosomal protein L22; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_N 4a1b_N 4a1d_N
Probab=81.32 E-value=1.4 Score=30.03 Aligned_cols=27 Identities=19% Similarity=0.388 Sum_probs=23.8
Q ss_pred CCCCcEEEEECCCCcceEEEEEEEEEe
Q psy1800 1 MFPGNLCMITGGRNLGRVGTVVNRERH 27 (81)
Q Consensus 1 fe~G~~~mVtgG~n~GrvG~I~~ie~~ 27 (81)
+++|.+|+|..|+++|+-.+|.++...
T Consensus 5 ~kpGrVvivl~Gr~aGkkaVIvk~iD~ 31 (144)
T 4a18_N 5 LKYGRVVILLQGRFAGKKAVIVKSSED 31 (144)
T ss_dssp CCTTEEEEECSSTTTTCEEEEEEEESS
T ss_pred ccCCeEEEEecCCcCCCEEEEEEecCC
Confidence 589999999999999999999987543
No 25
>2joy_A 50S ribosomal protein L14E; protein solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: b.34.5.7 PDB: 2kds_A
Probab=80.45 E-value=1.2 Score=27.87 Aligned_cols=25 Identities=24% Similarity=0.450 Sum_probs=22.8
Q ss_pred CCCCcEEEEECCCCcceEEEEEEEE
Q psy1800 1 MFPGNLCMITGGRNLGRVGTVVNRE 25 (81)
Q Consensus 1 fe~G~~~mVtgG~n~GrvG~I~~ie 25 (81)
+++|.+|++..|++.|+..+|.++.
T Consensus 4 v~~GrVv~~~~Gr~~Gk~~VIv~~i 28 (96)
T 2joy_A 4 IEVGRICVKVKGREAGSKCVIVDII 28 (96)
T ss_dssp SSTTEEEECSSSSTTCCEEEEEEEC
T ss_pred cccCEEEEEeecCCCCCEEEEEEEe
Confidence 4789999999999999999999884
No 26
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=77.37 E-value=2.3 Score=27.82 Aligned_cols=36 Identities=22% Similarity=0.319 Sum_probs=28.2
Q ss_pred CCCCcEEEEECCCCcceEEEEEEEEEecCCCcEEEEE
Q psy1800 1 MFPGNLCMITGGRNLGRVGTVVNRERHPGSFDIVHVK 37 (81)
Q Consensus 1 fe~G~~~mVtgG~n~GrvG~I~~ie~~~g~~~iV~ik 37 (81)
|++|+.+-|+.|.-.|..|+|.++..+.+ .-.|.+.
T Consensus 92 ~~~Gd~VrI~~Gpf~g~~g~V~~vd~~k~-~v~V~v~ 127 (152)
T 3p8b_B 92 LEPGDLVEVIAGPFKGQKAKVVKIDESKD-EVVVQFI 127 (152)
T ss_dssp CCTTCEEEECSSTTTTCEEEEEEEETTTT-EEEEEES
T ss_pred CCCCCEEEEeeecCCCCEEEEEEEeCCCC-EEEEEEE
Confidence 68999999999999999999999975432 2244443
No 27
>1mkh_A Metrs;, C-terminal domain of methionyl-tRNA synthetase; beta barrel, dimerization domain, ligase; 2.01A {Pyrococcus abyssi} SCOP: b.40.4.4
Probab=71.11 E-value=6 Score=24.96 Aligned_cols=26 Identities=31% Similarity=0.506 Sum_probs=17.9
Q ss_pred eEEEEEEEEEecCCCcEEEEEcCCCC
Q psy1800 17 RVGTVVNRERHPGSFDIVHVKDGNGH 42 (81)
Q Consensus 17 rvG~I~~ie~~~g~~~iV~ikd~~g~ 42 (81)
|+|+|.+.++||.+..+..++=.-|+
T Consensus 14 ~VG~I~~~e~hp~adkL~~~~Vd~G~ 39 (107)
T 1mkh_A 14 RVGKIIEVKDHPNADKLYVVKVDLGD 39 (107)
T ss_dssp EEEEEEEEEECTTCSSCEEEEEECSS
T ss_pred EEEEEEEEEECCCCCccEEEEEEeCC
Confidence 68999999999985444444433343
No 28
>2jvv_A Transcription antitermination protein NUSG; transcription factor, transcription regulation, transcription termination; NMR {Escherichia coli} PDB: 2k06_A 2kvq_G
Probab=69.93 E-value=4.2 Score=27.16 Aligned_cols=27 Identities=19% Similarity=0.273 Sum_probs=24.6
Q ss_pred CCCCcEEEEECCCCcceEEEEEEEEEe
Q psy1800 1 MFPGNLCMITGGRNLGRVGTVVNRERH 27 (81)
Q Consensus 1 fe~G~~~mVtgG~n~GrvG~I~~ie~~ 27 (81)
|++|+.+-|+.|.=.|..|+|.++..+
T Consensus 128 ~~~Gd~V~V~~GPf~g~~G~v~~v~~~ 154 (181)
T 2jvv_A 128 FEPGEMVRVNDGPFADFNGVVEEVDYE 154 (181)
T ss_dssp CCTTEEEEECSSTTTTEEEEEEEEETT
T ss_pred CCCCCEEEEeccCCCCcEEEEEEEeCC
Confidence 678999999999999999999998644
No 29
>2cwp_A Metrs related protein; structural GEN riken structural genomics/proteomics initiative, RSGI; 2.10A {Pyrococcus horikoshii}
Probab=69.72 E-value=7.2 Score=24.81 Aligned_cols=26 Identities=19% Similarity=0.291 Sum_probs=17.8
Q ss_pred eEEEEEEEEEecCCCcEEEEEcCCCC
Q psy1800 17 RVGTVVNRERHPGSFDIVHVKDGNGH 42 (81)
Q Consensus 17 rvG~I~~ie~~~g~~~iV~ikd~~g~ 42 (81)
|+|+|.+.++||.+..+..++=..|+
T Consensus 18 rVG~I~~~e~hp~adkL~~~~VD~G~ 43 (112)
T 2cwp_A 18 KVGLVKKAEKIKRTKKLIKLIVDFGN 43 (112)
T ss_dssp EEEEEEEEEECTTCSSCEEEEEECSS
T ss_pred EEEEEEEEEECCCCCccEEEEEEeCC
Confidence 68999999999985444444333343
No 30
>1pyb_A Methionyl-tRNA synthetase beta subunit; oligonucleotide, oligosaccharide-binding fold, OB-fold, beta-barrel, RNA binding protein; 2.50A {Aquifex aeolicus} SCOP: b.40.4.4
Probab=66.43 E-value=6.4 Score=24.99 Aligned_cols=26 Identities=31% Similarity=0.423 Sum_probs=17.9
Q ss_pred eEEEEEEEEEecCCCcEEEEEcCCCC
Q psy1800 17 RVGTVVNRERHPGSFDIVHVKDGNGH 42 (81)
Q Consensus 17 rvG~I~~ie~~~g~~~iV~ikd~~g~ 42 (81)
|+|+|.+.++||.+..+..++=.-|+
T Consensus 18 rVG~I~~~e~hp~adkL~~~~Vd~G~ 43 (111)
T 1pyb_A 18 RVAKVLSAERVEGSEKLLKLTLSLGD 43 (111)
T ss_dssp EEEEEEEEECCSSCSCCEEEEEEETT
T ss_pred EEEEEEEEEECCCCCccEEEEEEeCC
Confidence 68999999999985444444433443
No 31
>1pxf_A Hypothetical protein YGJH; oligonucleotide-oligosaccharide binding fold, OB fold, beta- barrel; 1.87A {Escherichia coli} PDB: 3ers_X
Probab=60.88 E-value=8 Score=24.57 Aligned_cols=17 Identities=35% Similarity=0.626 Sum_probs=14.1
Q ss_pred eEEEEEEEEEecCCCcE
Q psy1800 17 RVGTVVNRERHPGSFDI 33 (81)
Q Consensus 17 rvG~I~~ie~~~g~~~i 33 (81)
|+|+|.+.++||.+..+
T Consensus 15 rVG~I~~~e~hp~adkL 31 (111)
T 1pxf_A 15 RVGKIVEVKRHENADKL 31 (111)
T ss_dssp EEEEEEEEECCTTCTTC
T ss_pred EEEEEEEEEECCCCCeE
Confidence 79999999999985433
No 32
>3ers_X TRNA-binding protein YGJH; oligonucleotide-oligosaccharide binding fold; 1.87A {Escherichia coli}
Probab=58.45 E-value=12 Score=24.10 Aligned_cols=21 Identities=33% Similarity=0.532 Sum_probs=15.7
Q ss_pred eEEEEEEEEEecCCCcEEEEE
Q psy1800 17 RVGTVVNRERHPGSFDIVHVK 37 (81)
Q Consensus 17 rvG~I~~ie~~~g~~~iV~ik 37 (81)
|+|+|.+.++||.+.....++
T Consensus 15 rVG~I~~~e~hp~AdKL~~~~ 35 (118)
T 3ers_X 15 RVGKIVEVKRHENADKLYIVQ 35 (118)
T ss_dssp EEEEEEEEECCTTCSSCEEEE
T ss_pred EEEEEEEEEEcCCCCCcEEEE
Confidence 799999999999844443333
No 33
>1gd7_A CSAA protein; oligonucleotide-binding fold, functional dimer, hydrophobic cavity, riken structural genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: b.40.4.4
Probab=58.34 E-value=13 Score=23.53 Aligned_cols=17 Identities=35% Similarity=0.438 Sum_probs=14.5
Q ss_pred eEEEEEEEEEecCCCcE
Q psy1800 17 RVGTVVNRERHPGSFDI 33 (81)
Q Consensus 17 rvG~I~~ie~~~g~~~i 33 (81)
|+|+|.+.++||.+..+
T Consensus 13 ~VG~I~~~e~hp~adkL 29 (109)
T 1gd7_A 13 RVGRVLRAEPHEKARKP 29 (109)
T ss_dssp EEEEEEEEEECTTCSSC
T ss_pred EEEEEEEEEECCCCccc
Confidence 68999999999985554
No 34
>2nzh_A Protein CSAA; beta barrel, oligonucleotide/oligosaccharide binding fold, H chaperone; 1.90A {Bacillus subtilis} PDB: 2nzo_A
Probab=57.55 E-value=12 Score=23.81 Aligned_cols=17 Identities=35% Similarity=0.464 Sum_probs=14.4
Q ss_pred eEEEEEEEEEecCCCcE
Q psy1800 17 RVGTVVNRERHPGSFDI 33 (81)
Q Consensus 17 rvG~I~~ie~~~g~~~i 33 (81)
|+|+|.+.++||.+..+
T Consensus 16 rVG~I~~~e~hp~adkL 32 (113)
T 2nzh_A 16 RTGTIVKAEEFPEARVP 32 (113)
T ss_dssp EEEEEEEEEEETTSSSC
T ss_pred EEEEEEEEEECCCCCcc
Confidence 68999999999985554
No 35
>3g48_A Chaperone CSAA; structural genomics, niaid structural centers for infectious diseases, center for structural GENO infectious diseases; 1.50A {Bacillus anthracis} SCOP: b.40.4.4
Probab=56.12 E-value=14 Score=23.56 Aligned_cols=21 Identities=24% Similarity=0.387 Sum_probs=16.6
Q ss_pred eEEEEEEEEEecCCCc-EEEEE
Q psy1800 17 RVGTVVNRERHPGSFD-IVHVK 37 (81)
Q Consensus 17 rvG~I~~ie~~~g~~~-iV~ik 37 (81)
|+|+|.+.++||.+.. +..++
T Consensus 16 rVG~I~~~e~hp~adkpL~~~~ 37 (112)
T 3g48_A 16 RIGTVTHAEEFKEARVPAIRLE 37 (112)
T ss_dssp EEEEEEEEEEEEETTEEEEEEE
T ss_pred EEEEEEEEEECCCCCCeEEEEE
Confidence 7999999999999765 54443
No 36
>2q2i_A AGR_C_4014P, secretion chaperone; beta barrel, OB fold, homodimer, protein secretio; 1.55A {Agrobacterium tumefaciens str}
Probab=54.43 E-value=13 Score=23.70 Aligned_cols=17 Identities=35% Similarity=0.466 Sum_probs=14.3
Q ss_pred eEEEEEEEEEecCCCcE
Q psy1800 17 RVGTVVNRERHPGSFDI 33 (81)
Q Consensus 17 rvG~I~~ie~~~g~~~i 33 (81)
|+|+|.+.++||.+..+
T Consensus 19 rVG~I~~~e~hp~adkL 35 (116)
T 2q2i_A 19 RVGTIVEAVPFPEARKP 35 (116)
T ss_dssp EEEEEEEEEECTTSSSC
T ss_pred EEEEEEEEEECCCCCCc
Confidence 69999999999985544
No 37
>3bbo_W Ribosomal protein L24; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=53.63 E-value=1.8 Score=30.73 Aligned_cols=26 Identities=19% Similarity=0.473 Sum_probs=23.0
Q ss_pred CCCcEEEEECCCCcceEEEEEEEEEe
Q psy1800 2 FPGNLCMITGGRNLGRVGTVVNRERH 27 (81)
Q Consensus 2 e~G~~~mVtgG~n~GrvG~I~~ie~~ 27 (81)
..|+.++|+.|++-|..|+|.++.+.
T Consensus 70 kKGD~V~VIaGkDKGK~GkVl~V~~k 95 (191)
T 3bbo_W 70 KVGDTVKVISGGEKGKIGEISKIHKH 95 (191)
T ss_dssp CCSSCEEECSSSSTTCCCSCCCCCSS
T ss_pred ecCCEEEEeecCCCCceEEEEEEECC
Confidence 47999999999999999999988543
No 38
>2ftc_B Mitochondrial ribosomal protein L2; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_B
Probab=53.09 E-value=33 Score=22.72 Aligned_cols=49 Identities=20% Similarity=0.325 Sum_probs=29.9
Q ss_pred EEEEEEEecC-CCcEEEEEcCCCCEEEEeeccEEEEecCCcceEecCCCceeeeeeeec
Q psy1800 20 TVVNRERHPG-SFDIVHVKDGNGHVFATRLNNVFIIGKGTKAFCSKPKRNFVSPRQTCP 77 (81)
Q Consensus 20 ~I~~ie~~~g-~~~iV~ikd~~g~~F~T~~~nVfvIGk~~kp~IsLp~~kgi~~~~~~~ 77 (81)
.|.+||.+|| .--++ .+.|. |++++.. +++.-.+.||.++=-++...|-
T Consensus 67 ~IhNIE~~pG~gg~la---RsAGt-~a~ii~k-----e~~~~~vrLPSGe~r~v~~~c~ 116 (136)
T 2ftc_B 67 LINNVESEPGRGAQYI---RAAGT-CGVLLRK-----VNGTAIIQLPSKRQMQVLETCV 116 (136)
T ss_pred EEEEEeccCCCCcEEE---EeCCC-eEEEEEe-----cCCEEEEECCCCCeEEECcCCc
Confidence 3556666666 22222 24443 5544433 3355677999999999998884
No 39
>3fuy_A HFX_CASS1, putative integron gene cassette protein; integron cassette protein, mobIle metagenome, structural genomics, PSI-2; 2.00A {Uncultured bacterium}
Probab=48.94 E-value=9.8 Score=25.99 Aligned_cols=22 Identities=36% Similarity=0.538 Sum_probs=18.8
Q ss_pred CCcEEEEEcCCCCEEEEeeccEEEEec
Q psy1800 30 SFDIVHVKDGNGHVFATRLNNVFIIGK 56 (81)
Q Consensus 30 ~~~iV~ikd~~g~~F~T~~~nVfvIGk 56 (81)
++++|+++|.+..+|+ |.-||+
T Consensus 31 spslvtirdfdngqfa-----vlrigr 52 (179)
T 3fuy_A 31 SPSLVTIRDFDNGQFA-----VLRIGR 52 (179)
T ss_dssp ETTEEEEEETTTTEEE-----EEECTT
T ss_pred CcceEEEEecCCCcEE-----EEEecc
Confidence 7899999998888998 566786
No 40
>2q2h_A AGR_C_4014P, secretion chaperone, phage-display derived peptid; beta barrel, OB fold, homodimer, protein secretio; HET: CIT; 1.65A {Agrobacterium tumefaciens str}
Probab=48.22 E-value=19 Score=23.58 Aligned_cols=17 Identities=35% Similarity=0.466 Sum_probs=14.4
Q ss_pred eEEEEEEEEEecCCCcE
Q psy1800 17 RVGTVVNRERHPGSFDI 33 (81)
Q Consensus 17 rvG~I~~ie~~~g~~~i 33 (81)
|+|+|.+.++||.+..+
T Consensus 34 rVG~I~~~e~hP~AdkL 50 (131)
T 2q2h_A 34 RVGTIVEAVPFPEARKP 50 (131)
T ss_dssp EEEEEEEEEECTTCSSC
T ss_pred EEEEEEEEEECCCCCcc
Confidence 69999999999985554
No 41
>3iz5_B 60S ribosomal protein L2 (L2P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_B 2zkr_a
Probab=45.66 E-value=25 Score=25.91 Aligned_cols=38 Identities=13% Similarity=0.107 Sum_probs=30.9
Q ss_pred ceEEEEEEEEEecC-CCcEEEEEcCCCCEEEEeeccEEE
Q psy1800 16 GRVGTVVNRERHPG-SFDIVHVKDGNGHVFATRLNNVFI 53 (81)
Q Consensus 16 GrvG~I~~ie~~~g-~~~iV~ikd~~g~~F~T~~~nVfv 53 (81)
+..|+|.+||--|+ +-.+..|.-.||+.|.+..+|+..
T Consensus 40 ~i~g~V~~IeyDPnRsA~IAlV~~~dg~~~k~~k~yIlA 78 (261)
T 3iz5_B 40 YLKGVVTDIIHDPGRGAPLAKVTFRHPFRYKHQKELFVA 78 (261)
T ss_dssp SSEEEEEEEEEETTTTEEEEEEECCCCSSSCCCCCEEEC
T ss_pred CccEEEEEEEECCCceeEEEEEEecCCCcccceEEEEEe
Confidence 45699999999998 888988888888777777777653
No 42
>2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga maritima}
Probab=44.76 E-value=19 Score=27.14 Aligned_cols=27 Identities=15% Similarity=0.199 Sum_probs=24.6
Q ss_pred CCCCcEEEEECCCCcceEEEEEEEEEe
Q psy1800 1 MFPGNLCMITGGRNLGRVGTVVNRERH 27 (81)
Q Consensus 1 fe~G~~~mVtgG~n~GrvG~I~~ie~~ 27 (81)
|++|+.+-|+.|.=.|..|+|.++..+
T Consensus 299 f~~Gd~VrV~~GPF~G~~G~V~evd~e 325 (352)
T 2xhc_A 299 FKVGDMVKIISGPFEDFAGVIKEIDPE 325 (352)
T ss_dssp CCTTCEEEECSSTTTTCEEEEEEEETT
T ss_pred CCCCCEEEEeccCCCCcEEEEEEEcCC
Confidence 678999999999999999999999643
No 43
>3bu2_A Putative tRNA-binding protein; structural genomics, PSI-2, protein structure initiative; 2.70A {Staphylococcus saprophyticus subsp}
Probab=43.71 E-value=32 Score=24.13 Aligned_cols=21 Identities=24% Similarity=0.457 Sum_probs=16.0
Q ss_pred eEEEEEEEEEecCCCcEEEEE
Q psy1800 17 RVGTVVNRERHPGSFDIVHVK 37 (81)
Q Consensus 17 rvG~I~~ie~~~g~~~iV~ik 37 (81)
++|+|.+.++||.+..+..++
T Consensus 94 vVG~V~~~e~hP~ADkL~v~~ 114 (199)
T 3bu2_A 94 VVGYVETKDKHPDADKLSVLS 114 (199)
T ss_dssp EEEEEEEEEECTTTSSCEEEE
T ss_pred EEEEEEEEEECCCCCEEEEEE
Confidence 689999999999854444443
No 44
>1giy_D 50S ribosomal protein L2; ribosome assembly, protein synthesis, LIFE; 5.50A {Thermus thermophilus} SCOP: i.1.1.1 PDB: 1ml5_d* 1yl3_D 2b66_D 2b9n_D 2b9p_D
Probab=43.10 E-value=51 Score=22.82 Aligned_cols=48 Identities=25% Similarity=0.322 Sum_probs=29.3
Q ss_pred EEEEEEEecCC-CcEEEEEcCCCCEEEEeeccEEEEec-CCcceEecCCCceeeeeeeec
Q psy1800 20 TVVNRERHPGS-FDIVHVKDGNGHVFATRLNNVFIIGK-GTKAFCSKPKRNFVSPRQTCP 77 (81)
Q Consensus 20 ~I~~ie~~~g~-~~iV~ikd~~g~~F~T~~~nVfvIGk-~~kp~IsLp~~kgi~~~~~~~ 77 (81)
.|.+||..||. --++ .+.|. |++ +|++ ++.-.+.||.++=-.++..|-
T Consensus 80 ~I~NIE~~pG~gg~la---RsAGt-~a~------ii~ke~~~~~vrLPSGe~r~v~~~c~ 129 (178)
T 1giy_D 80 LVHNIELKPGRGGQLV---RAAGT-SAQ------VLGKEGKYVIVRLASGEVRMILGKCR 129 (178)
T ss_pred EEEeEeccCCCCeEEE---EeCCC-eEE------EEEecCCeEEEECCCCCEEEEcccCc
Confidence 35566666662 2222 24443 454 4443 355677999999888888885
No 45
>2qf4_A Cell shape determining protein MREC; filament A-lytic protease fold, structural protein; 1.20A {Streptococcus pneumoniae} PDB: 2qf5_A
Probab=41.57 E-value=29 Score=23.14 Aligned_cols=37 Identities=22% Similarity=0.266 Sum_probs=29.1
Q ss_pred eEEEEEEEEEecC-CCcEEEEEcCCCCEEEEeeccEEEEec
Q psy1800 17 RVGTVVNRERHPG-SFDIVHVKDGNGHVFATRLNNVFIIGK 56 (81)
Q Consensus 17 rvG~I~~ie~~~g-~~~iV~ikd~~g~~F~T~~~nVfvIGk 56 (81)
.||+|.+++..++ .+-.+.++=+.. ...++||+||-.
T Consensus 129 pVG~V~~v~~~~~~~~~~i~v~p~ad---~~~l~~V~Vi~~ 166 (172)
T 2qf4_A 129 PVGEVVATTHSTDYLTREVTVKLSAD---THNVDVIELVGN 166 (172)
T ss_dssp EEEEEEEEESTTCSSCCEEEEEESCC---CTTCCEEEEEEE
T ss_pred EEEEEEEEecCCCCcEEEEEEEECCC---cccCeEEEEEeC
Confidence 4899999998876 778888886542 467899999976
No 46
>1ntg_A Tyrrs, tyrosyl-tRNA synthetase; beta barrel, ligase; 2.21A {Homo sapiens} SCOP: b.40.4.4
Probab=40.97 E-value=28 Score=23.75 Aligned_cols=20 Identities=30% Similarity=0.574 Sum_probs=15.1
Q ss_pred eEEEEEEEEEecCCCcEEEE
Q psy1800 17 RVGTVVNRERHPGSFDIVHV 36 (81)
Q Consensus 17 rvG~I~~ie~~~g~~~iV~i 36 (81)
|+|+|.+.++||.+..+..+
T Consensus 13 rVG~I~~~e~hP~AdkL~v~ 32 (172)
T 1ntg_A 13 RVGKIITVEKHPDADSLYVE 32 (172)
T ss_dssp EEEEEEEEEECTTCSSCEEE
T ss_pred EEEEEEEEEECCCCCccEEE
Confidence 68999999999984444333
No 47
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=37.46 E-value=46 Score=23.56 Aligned_cols=37 Identities=22% Similarity=0.280 Sum_probs=29.6
Q ss_pred eEEEEEEEEEecC-CCcEEEEEcCCCCEEEEeeccEEEEec
Q psy1800 17 RVGTVVNRERHPG-SFDIVHVKDGNGHVFATRLNNVFIIGK 56 (81)
Q Consensus 17 rvG~I~~ie~~~g-~~~iV~ikd~~g~~F~T~~~nVfvIGk 56 (81)
-||+|.+++..++ .+-.+.++=+.. ...++||+||-.
T Consensus 190 pVG~V~~V~~~~~~~~~~i~v~P~ad---~~~l~~V~Vi~~ 227 (255)
T 2j5u_A 190 FIGTIEKVETDKMGLSQTAFIKPGAD---MYDLNHVTVLKR 227 (255)
T ss_dssp EEEEEEEEEECTTSSEEEEEEEESSC---CSSCCEEEEEEE
T ss_pred EEEEEEEEeeCCCCceEEEEEEECCC---cccCeEEEEEec
Confidence 4899999998876 788888885442 468899999976
No 48
>3mxn_B RECQ-mediated genome instability protein 2; bloom syndrome, helicase, RMI, topoisomerase, replication PR replication; 1.55A {Homo sapiens} PDB: 4day_B 3nbh_B
Probab=37.39 E-value=14 Score=25.23 Aligned_cols=12 Identities=33% Similarity=0.778 Sum_probs=9.8
Q ss_pred CCCCcEEEEECC
Q psy1800 1 MFPGNLCMITGG 12 (81)
Q Consensus 1 fe~G~~~mVtgG 12 (81)
|+.|.||||+|.
T Consensus 99 l~~G~YVMV~G~ 110 (150)
T 3mxn_B 99 LVPGKYVMVMGV 110 (150)
T ss_dssp CSTTCEEEEEEE
T ss_pred cCCCCEEEEEEE
Confidence 578999999764
No 49
>4a18_E RPL6; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_E 4a1b_E 4a1d_E
Probab=37.15 E-value=33 Score=24.20 Aligned_cols=24 Identities=21% Similarity=0.472 Sum_probs=20.6
Q ss_pred CCCCcEEEEECCCCcceEEEEEEE
Q psy1800 1 MFPGNLCMITGGRNLGRVGTVVNR 24 (81)
Q Consensus 1 fe~G~~~mVtgG~n~GrvG~I~~i 24 (81)
+.+|..+++..|+|.|+-.++...
T Consensus 45 i~pGtVlIiL~Gr~~GKrvV~LKq 68 (191)
T 4a18_E 45 IAPGTVLILLAGRFRGKRVVFLKQ 68 (191)
T ss_dssp CCTTEEEEECSSTTTTBEEEEEEE
T ss_pred ccCCCEEEEeccccCCCEEEEEEe
Confidence 468999999999999998877654
No 50
>1fl0_A Endothelial-monocyte activating polypeptide II; RNA-binding domain, OB-fold, tRNA synthetase complex, RNA binding protein; 1.50A {Homo sapiens} SCOP: b.40.4.4 PDB: 1e7z_A 1euj_A
Probab=36.83 E-value=31 Score=23.49 Aligned_cols=21 Identities=19% Similarity=0.523 Sum_probs=16.1
Q ss_pred eEEEEEEEEEecCCCcEEEEE
Q psy1800 17 RVGTVVNRERHPGSFDIVHVK 37 (81)
Q Consensus 17 rvG~I~~ie~~~g~~~iV~ik 37 (81)
|+|+|.+.++||.+..+..++
T Consensus 9 rVG~I~~~e~hP~AdkL~v~~ 29 (171)
T 1fl0_A 9 RIGCIITARKHPDADSLYVEE 29 (171)
T ss_dssp EEEEEEEEEEETTEEEEEEEE
T ss_pred EEEEEEEEEECCCCCccEEEE
Confidence 689999999999855554443
No 51
>1i2k_A 4-amino-4-deoxychorismate lyase; pyridoxal phosphate, PABC; HET: PLP; 1.79A {Escherichia coli} SCOP: e.17.1.1 PDB: 1et0_A* 1i2l_A*
Probab=36.74 E-value=47 Score=22.97 Aligned_cols=37 Identities=19% Similarity=0.090 Sum_probs=26.8
Q ss_pred cEEEEEcCCCCEEEEeeccEEEEecCCcceEecCCCcee
Q psy1800 32 DIVHVKDGNGHVFATRLNNVFIIGKGTKAFCSKPKRNFV 70 (81)
Q Consensus 32 ~iV~ikd~~g~~F~T~~~nVfvIGk~~kp~IsLp~~kgi 70 (81)
+-+.+-|.+|+.=++-.+|+|++= +.-|++=|...|+
T Consensus 160 de~l~ld~~G~v~E~s~sNif~v~--~g~l~TP~~~~~i 196 (269)
T 1i2k_A 160 DEALVLDSEGWVTECCAANLFWRK--GNVVYTPRLDQAG 196 (269)
T ss_dssp SEEEEEBTTSBEEECSSSEEEEEE--TTEEEEECCSSSS
T ss_pred CEEEEECCCCcEEEcCceEEEEEE--CCEEECCCCccCc
Confidence 344556899999999999999983 3347776665543
No 52
>3lul_A 4-amino-4-deoxychorismate lyase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2, pyridoxal phosphate; HET: MSE LLP; 1.78A {Legionella pneumophila}
Probab=36.07 E-value=44 Score=23.39 Aligned_cols=37 Identities=19% Similarity=0.249 Sum_probs=26.7
Q ss_pred cEEEEEcCCCCEEEEeeccEEEEecCCcceEecCCCcee
Q psy1800 32 DIVHVKDGNGHVFATRLNNVFIIGKGTKAFCSKPKRNFV 70 (81)
Q Consensus 32 ~iV~ikd~~g~~F~T~~~nVfvIGk~~kp~IsLp~~kgi 70 (81)
+-+.+-|.+|..=++-.+|+|++ + +.-|++-|...|+
T Consensus 161 de~L~ld~~g~v~E~~~sNif~~-~-~g~l~TP~l~~~i 197 (272)
T 3lul_A 161 DDALFFNTENHVTETTCANLFLI-E-NNILYTPRVEDGI 197 (272)
T ss_dssp SEEEEEETTSBEEEESSCEEEEE-E-TTEEEECCGGGTC
T ss_pred CEEEEECCCCeEEEcCCeEEEEE-E-CCEEECCCCccCc
Confidence 34445588999999999999999 4 3457776655444
No 53
>2e8g_A Hypothetical protein PH0536; oligonucleotide/oligosaccharide-binding fold, alpha-helices bundle, structural genomics, NPPSFA; 1.70A {Pyrococcus horikoshii}
Probab=35.96 E-value=44 Score=24.19 Aligned_cols=20 Identities=25% Similarity=0.444 Sum_probs=15.1
Q ss_pred eEEEEEEEEEecCCCcEEEE
Q psy1800 17 RVGTVVNRERHPGSFDIVHV 36 (81)
Q Consensus 17 rvG~I~~ie~~~g~~~iV~i 36 (81)
++|+|.+.+.||.+..+..+
T Consensus 139 rVGkIl~ve~hP~AdKL~v~ 158 (241)
T 2e8g_A 139 VVGEVMSVGKHPSADRLLVT 158 (241)
T ss_dssp EEEEEEEEEECTTCTTCEEE
T ss_pred EEEEEEEEEECCCCCccEEE
Confidence 68999999999985444333
No 54
>3g66_A Sortase C; pilus, transferase; HET: MES; 1.70A {Streptococcus pneumoniae} PDB: 3g69_A*
Probab=34.35 E-value=70 Score=22.24 Aligned_cols=47 Identities=13% Similarity=0.070 Sum_probs=34.7
Q ss_pred CCcEEEEEcCCCCEEEEeeccEEEEecCCcceEecCCCceeeeeeeec
Q psy1800 30 SFDIVHVKDGNGHVFATRLNNVFIIGKGTKAFCSKPKRNFVSPRQTCP 77 (81)
Q Consensus 30 ~~~iV~ikd~~g~~F~T~~~nVfvIGk~~kp~IsLp~~kgi~~~~~~~ 77 (81)
.-+.|.|.+.++ .+.-....+.++-..+-+.+....++-.-...||-
T Consensus 131 ~GD~I~v~~~~~-~~~Y~V~~~~vV~p~d~~~l~~~~~~~~LTLiTC~ 177 (212)
T 3g66_A 131 KGDIFYLHVLDQ-VLAYQVDQIVTVEPNDFEPVLIQHGEDYATLLTCT 177 (212)
T ss_dssp TTCEEEEEETTE-EEEEEEEEEEEECTTCCGGGSCCTTCEEEEEEEEE
T ss_pred cCCEEEEEECCe-EEEEEEeeEEEECccccceeccCCCCCEEEEEECC
Confidence 457899999887 89999999999987555555544555555667884
No 55
>1iye_A Branched-chain amino acid aminotransferase; hexamer, PLP; HET: PGU; 1.82A {Escherichia coli} SCOP: e.17.1.1 PDB: 1i1l_A* 1i1m_A* 1iyd_A* 1i1k_A* 1a3g_A*
Probab=34.17 E-value=48 Score=23.40 Aligned_cols=37 Identities=19% Similarity=0.137 Sum_probs=26.4
Q ss_pred cEEEEEcCCCCEEEEeeccEEEEecCCcceEecCCCcee
Q psy1800 32 DIVHVKDGNGHVFATRLNNVFIIGKGTKAFCSKPKRNFV 70 (81)
Q Consensus 32 ~iV~ikd~~g~~F~T~~~nVfvIGk~~kp~IsLp~~kgi 70 (81)
+-+.+-|.+|+.=++-.+|+|++ + +.-|++=|...|+
T Consensus 181 de~l~ld~~G~V~Egs~sNif~v-~-~g~l~TP~l~~~i 217 (309)
T 1iye_A 181 QEGIALDVNGYISEGAGENLFEV-K-DGVLFTPPFTSSA 217 (309)
T ss_dssp SEEEEECTTSBEEEETTBEEEEE-E-TTEEEECCGGGTC
T ss_pred CEEEEECCCCcEEEcCceEEEEE-E-CCEEECCCCCCCC
Confidence 33445688999999999999998 4 3347776655443
No 56
>3f1f_4 50S ribosomal protein L31; RF2, ribosome, termination, tRNA; 3.00A {Thermus thermophilus} PDB: 3d5d_4 3d5b_4 3f1h_4
Probab=33.61 E-value=9.3 Score=24.38 Aligned_cols=39 Identities=21% Similarity=0.261 Sum_probs=12.5
Q ss_pred ECCCCcceEEEEEEEEEecCCCcEEEEEcCCCCEEEEeec
Q psy1800 10 TGGRNLGRVGTVVNRERHPGSFDIVHVKDGNGHVFATRLN 49 (81)
Q Consensus 10 tgG~n~GrvG~I~~ie~~~g~~~iV~ikd~~g~~F~T~~~ 49 (81)
..|....+...+++-..||-.. -|.+.|.+|+.|.|.+-
T Consensus 15 ~~g~~~~~~~~~MKk~IHP~Y~-~v~v~ct~G~~f~t~ST 53 (97)
T 3f1f_4 15 AHGQDRAKKEANVKEGIHPKLV-PARIICGCGNVIETYST 53 (97)
T ss_dssp ---------------------C-CCEEEETTEEEEECCCS
T ss_pred ccchhhhhhhccccCCCCCCCe-EEEEEECCCCEEEeeee
Confidence 4566667767777777788743 34467789998888754
No 57
>3v2d_4 50S ribosomal protein L31; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_3 2hgj_3 2hgu_3 2j03_4 2v47_4 2v49_4 2wdi_4 2wdj_4 2wdl_4 2wdn_4 2wh2_4 2wrj_4 2wrl_4 2wro_4 2wrr_4 2x9s_4 2x9u_4 2xg0_4 2xg2_4 2xqe_4 ...
Probab=33.44 E-value=43 Score=19.95 Aligned_cols=22 Identities=27% Similarity=0.359 Sum_probs=16.4
Q ss_pred ecCCCcEEEEEcCCCCEEEEeec
Q psy1800 27 HPGSFDIVHVKDGNGHVFATRLN 49 (81)
Q Consensus 27 ~~g~~~iV~ikd~~g~~F~T~~~ 49 (81)
||- +.-|.+.|..|+.|.|++-
T Consensus 6 HP~-Y~~v~v~c~~g~~f~t~ST 27 (71)
T 3v2d_4 6 HPK-LVPARIICGCGNVIETYST 27 (71)
T ss_dssp SCC-CEEEEEEETTSCEEEEEES
T ss_pred CCC-CeEEEEEECCCCEEEeeee
Confidence 665 4556688889999988764
No 58
>3csw_A BCAT, putative branched-chain-amino-acid aminotransfera; TM0831, putative branched-chain amino acid aminotransferase; HET: PLP CIT; 2.15A {Thermotoga maritima MSB8}
Probab=32.06 E-value=58 Score=22.95 Aligned_cols=38 Identities=21% Similarity=0.224 Sum_probs=27.5
Q ss_pred CcEEEEEcCCCCEEEEeeccEEEEecCCcceEecCCCcee
Q psy1800 31 FDIVHVKDGNGHVFATRLNNVFIIGKGTKAFCSKPKRNFV 70 (81)
Q Consensus 31 ~~iV~ikd~~g~~F~T~~~nVfvIGk~~kp~IsLp~~kgi 70 (81)
++-+.+-|.+|..=++-.+|+|++ + +.-+++=|...|+
T Consensus 162 ~de~L~ld~~G~V~Egs~sNif~v-~-~g~l~TP~l~~~i 199 (285)
T 3csw_A 162 CYDVILLGLNGQVCEGSFSNVFLV-K-EGKLITPSLDSGI 199 (285)
T ss_dssp SSEEEEECTTSBEEEESSSEEEEE-E-TTEEEEECGGGTC
T ss_pred CCeEEEECCCCcEEEcCceEEEEE-E-CCEEEeCCCCCCc
Confidence 455666789999999999999998 3 3346666654443
No 59
>2xpf_A 4-amino-4-deoxychorismate lyase; para-aminobenzoic acid, folate biosynthesis; HET: PLP PG4; 1.75A {Pseudomonas aeruginosa} PDB: 2y4r_A* 2xpf_B*
Probab=31.88 E-value=75 Score=22.44 Aligned_cols=38 Identities=11% Similarity=0.056 Sum_probs=26.9
Q ss_pred CcEEEEEcCCCCEEEEeeccEEEEecCCcceEecCCCcee
Q psy1800 31 FDIVHVKDGNGHVFATRLNNVFIIGKGTKAFCSKPKRNFV 70 (81)
Q Consensus 31 ~~iV~ikd~~g~~F~T~~~nVfvIGk~~kp~IsLp~~kgi 70 (81)
++-+.+-|.+|+.=++-.+|||++= +.-|++=|...|+
T Consensus 180 ~de~L~ld~~G~V~Egs~sNif~v~--~g~l~TPpl~~~i 217 (292)
T 2xpf_A 180 HAEGLMLDVHERVVEGVFSNLLLVL--DGTLVAPDLRRCG 217 (292)
T ss_dssp CSEEEEEBTTCCEEEESSSEEEEEE--TTEEEEECCSSSS
T ss_pred CCEEEEECCCCCEEEcCCeEEEEEE--CCEEEeCCCCCcc
Confidence 3445556889999999999999984 3347766655443
No 60
>1m1h_A Transcription antitermination protein NUSG; transcription termination, RNP motif, immunoglobulin fold, nucleic acid interaction; 1.95A {Aquifex aeolicus} SCOP: b.114.1.1 d.58.42.1 PDB: 1m1g_A 1npp_A 1npr_A
Probab=30.90 E-value=10 Score=27.23 Aligned_cols=27 Identities=19% Similarity=0.203 Sum_probs=0.0
Q ss_pred CCCCcEEEEECCCCcceEEEEEEEEEe
Q psy1800 1 MFPGNLCMITGGRNLGRVGTVVNRERH 27 (81)
Q Consensus 1 fe~G~~~mVtgG~n~GrvG~I~~ie~~ 27 (81)
|++|+.+-|+.|.=.|..|+|.++...
T Consensus 195 ~~~Gd~V~I~~Gpf~g~~G~v~ev~~~ 221 (248)
T 1m1h_A 195 FEKGDQVRVIEGPFMNFTGTVEEVHPE 221 (248)
T ss_dssp ---------------------------
T ss_pred CCCCCEEEEeccCCCCcEEEEEEEeCC
Confidence 688999999999999999999999644
No 61
>3qqm_A MLR3007 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, transferase; HET: LLP; 2.30A {Mesorhizobium loti}
Probab=30.28 E-value=79 Score=21.42 Aligned_cols=39 Identities=15% Similarity=0.112 Sum_probs=28.2
Q ss_pred CcEEEEEcCCCCEEEEeeccEEEEecCCcceEecCCCcee
Q psy1800 31 FDIVHVKDGNGHVFATRLNNVFIIGKGTKAFCSKPKRNFV 70 (81)
Q Consensus 31 ~~iV~ikd~~g~~F~T~~~nVfvIGk~~kp~IsLp~~kgi 70 (81)
++-+.+-|.+|..=++-.+|+|++=. +.-|++-|...|+
T Consensus 137 ~~e~l~l~~~g~v~E~s~sNif~~~~-~~~l~TP~~~~~~ 175 (221)
T 3qqm_A 137 ADEVLLANERGEICEGTITNVFADFG-DGVLATPRLDCGL 175 (221)
T ss_dssp CSEEEEEBTTSCEEEESSCEEEEECS-SSCEEEECGGGTC
T ss_pred CcEEEEECCCCeEEEcCceeEEEEeC-CCEEECCCCccCc
Confidence 34444668899999999999999843 3457776666554
No 62
>4a17_A RPL8; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_A 4a1c_A 4a1e_A
Probab=30.17 E-value=55 Score=24.12 Aligned_cols=37 Identities=14% Similarity=0.138 Sum_probs=27.9
Q ss_pred ceEEEEEEEEEecC-CCcEEEEEcCCCCEEEEeeccEE
Q psy1800 16 GRVGTVVNRERHPG-SFDIVHVKDGNGHVFATRLNNVF 52 (81)
Q Consensus 16 GrvG~I~~ie~~~g-~~~iV~ikd~~g~~F~T~~~nVf 52 (81)
+..|+|.+||-.|+ +-.+..|.-.||..|.+..+|+.
T Consensus 41 ~i~g~V~~IeyDPnRsA~IAlv~~~dg~~~k~~k~YIl 78 (264)
T 4a17_A 41 YIRGCIRDIVHEPGRGAPLAEVAFRDPYRYKTNKEHFI 78 (264)
T ss_dssp EEEEEEEEEECCTTCSSCEEEEEEECTTSSCEEEEEEE
T ss_pred CcCEEEEEEEECCCCCceEEEEEecCCCcccceEEEEE
Confidence 45699999998898 88888887777765555555654
No 63
>1nkw_Y 50S ribosomal protein L31; ribosome, large subunit, X- RAY structure, peptidyl-transferase, peptide bond formation; 3.10A {Deinococcus radiodurans} SCOP: i.1.1.2 PDB: 1nwx_Y* 1nwy_Y* 1pnu_Y 1pny_Y 1sm1_Y* 1vor_1 1vou_1 1vow_1 1voy_1 1vp0_1 1xbp_Y* 1yl3_4 2b66_4 2b9n_4 2b9p_4
Probab=29.87 E-value=36 Score=20.38 Aligned_cols=23 Identities=17% Similarity=0.150 Sum_probs=16.5
Q ss_pred EecCCCcEEEEEcCCCCEEEEeec
Q psy1800 26 RHPGSFDIVHVKDGNGHVFATRLN 49 (81)
Q Consensus 26 ~~~g~~~iV~ikd~~g~~F~T~~~ 49 (81)
.||-... |.+.+++|+.|.|++-
T Consensus 5 IHP~y~~-v~~~~s~g~~f~t~ST 27 (73)
T 1nkw_Y 5 LHPKAVP-CKIIYQGQVVMETMST 27 (73)
T ss_pred CCCCCEE-EEEEECCCCEEEEccc
Confidence 3776444 6677899999988654
No 64
>4g1h_A Sortase family protein; cysteine protease, extracellular, transferase; 1.80A {Streptococcus agalactiae serogroup V}
Probab=27.59 E-value=1.2e+02 Score=21.01 Aligned_cols=47 Identities=11% Similarity=0.034 Sum_probs=34.1
Q ss_pred CCcEEEEEcCCCCEEEEeeccEEEEecCCcceEecCCCceeeeeeeec
Q psy1800 30 SFDIVHVKDGNGHVFATRLNNVFIIGKGTKAFCSKPKRNFVSPRQTCP 77 (81)
Q Consensus 30 ~~~iV~ikd~~g~~F~T~~~nVfvIGk~~kp~IsLp~~kgi~~~~~~~ 77 (81)
.-+.|.|.+.++ .|.-....+.++-..+-+.+....++-.-...||-
T Consensus 132 ~GD~I~v~~~~~-~~~Y~V~~~~vV~p~d~~~l~~~~g~~~LTLiTC~ 178 (215)
T 4g1h_A 132 KGQIFYVTNIKE-TLAYKVVSIKVVDPTALSEVKIVNGKDYITLLTCT 178 (215)
T ss_dssp TTCEEEEECSSC-EEEEEEEEEEEECGGGGGGCCCCTTCEEEEEEEEE
T ss_pred CCCEEEEEECCE-EEEEEEeeEEEECccccceeccCCCCCEEEEEECC
Confidence 457899999885 79999999999987455555544455555667884
No 65
>3izc_a 60S ribosomal protein RPL27 (L27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_a 3u5e_Z 3u5i_Z 4b6a_Z
Probab=27.11 E-value=6.3 Score=26.59 Aligned_cols=24 Identities=21% Similarity=0.454 Sum_probs=20.4
Q ss_pred CCCCcEEEEECCCCcceEEEEEEE
Q psy1800 1 MFPGNLCMITGGRNLGRVGTVVNR 24 (81)
Q Consensus 1 fe~G~~~mVtgG~n~GrvG~I~~i 24 (81)
+++|.+|++..|+.+|+-.+|...
T Consensus 5 ~kpGkVvivl~GryaGkKaVivk~ 28 (136)
T 3izc_a 5 LKAGKVAVVVRGRYAGKKVVIVKP 28 (136)
T ss_dssp CCCCCCCBCCCSSSSCCBCBCCCC
T ss_pred ccCCEEEEEeccccCCcEEEEEEe
Confidence 578999999999999997776643
No 66
>3daa_A D-amino acid aminotransferase; pyridoxal phosphate, transaminase; HET: PDD; 1.90A {Bacillus SP} SCOP: e.17.1.1 PDB: 4daa_A* 3lqs_A* 1daa_A* 2daa_A* 5daa_A* 1g2w_A* 1a0g_A* 2dab_A*
Probab=26.94 E-value=72 Score=22.39 Aligned_cols=39 Identities=23% Similarity=0.385 Sum_probs=27.9
Q ss_pred cCCCcEEEEEcCCCCEEEEeeccEEEEecCCcceEecCCCcee
Q psy1800 28 PGSFDIVHVKDGNGHVFATRLNNVFIIGKGTKAFCSKPKRNFV 70 (81)
Q Consensus 28 ~g~~~iV~ikd~~g~~F~T~~~nVfvIGk~~kp~IsLp~~kgi 70 (81)
.|.++.+.+ | +|..=++-.+|+|++= +.-|++-|...|+
T Consensus 162 ~g~~e~l~l-~-~g~v~E~~~sNif~~~--~~~l~TP~~~~~i 200 (277)
T 3daa_A 162 KGCYEAILH-R-NNTVTEGSSSNVFGIK--DGILYTHPANNMI 200 (277)
T ss_dssp TTCSEEEEE-E-TTEEEEETTBEEEEEE--TTEEEECCSSTTS
T ss_pred CCCCEEEEE-c-CCEEEEcCceEEEEEE--CCEEECCCCcCCC
Confidence 345677767 5 7899999999999983 3457776665544
No 67
>2e70_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.42 E-value=77 Score=18.86 Aligned_cols=23 Identities=26% Similarity=0.380 Sum_probs=20.8
Q ss_pred CCcEEEEECCCCcceEEEEEEEE
Q psy1800 3 PGNLCMITGGRNLGRVGTVVNRE 25 (81)
Q Consensus 3 ~G~~~mVtgG~n~GrvG~I~~ie 25 (81)
.|..+.|+.|..=|-.|+|++..
T Consensus 20 iGktV~I~kGpyKG~~GiVkd~t 42 (71)
T 2e70_A 20 IGQTVRISQGPYKGYIGVVKDAT 42 (71)
T ss_dssp TTSEEEECSSTTTTCEEEEEEEC
T ss_pred CCCEEEEeccCCCCeEEEEEECC
Confidence 58899999999999999999874
No 68
>3o0p_A Sortase family protein; PILI assembly, PILI subunits, transferase ,hydrolas transferase, hydrolase; 1.30A {Streptococcus agalactiae}
Probab=25.61 E-value=1.6e+02 Score=20.45 Aligned_cols=47 Identities=9% Similarity=0.017 Sum_probs=33.8
Q ss_pred CCcEEEEEcCCCCEEEEeeccEEEEecCCcceEecCCCceeeeeeeec
Q psy1800 30 SFDIVHVKDGNGHVFATRLNNVFIIGKGTKAFCSKPKRNFVSPRQTCP 77 (81)
Q Consensus 30 ~~~iV~ikd~~g~~F~T~~~nVfvIGk~~kp~IsLp~~kgi~~~~~~~ 77 (81)
.-+.|.|.+.++ .|.-....+.++-..+-+.+....++-.-..+||-
T Consensus 136 ~GD~I~v~~~~~-~~~Y~V~~~~vV~p~d~~~l~~~~~~~~LTLiTC~ 182 (216)
T 3o0p_A 136 KGDKFYIQNIKE-TIAYQVDQIKVVTPDNFSDLLVVPGHDYATLLTCT 182 (216)
T ss_dssp TTCEEEEECSSC-EEEEEEEEEEEECTTCCGGGSCCTTCEEEEEEEEE
T ss_pred cCCEEEEEECCE-EEEEEEeeEEEECccccceeccCCCCCEEEEEECC
Confidence 457899999875 79999999999987555555444455555667884
No 69
>1ci3_M Protein (cytochrome F); electron transfer protein, complex subunit, electron transpo; HET: HEM; 1.90A {Phormidium laminosum} SCOP: b.2.6.1 b.84.2.2 PDB: 1tu2_B*
Probab=23.70 E-value=1.7e+02 Score=21.45 Aligned_cols=27 Identities=11% Similarity=0.267 Sum_probs=21.4
Q ss_pred EEEEEEEEEecCCCcEEEEEcCCCCEE
Q psy1800 18 VGTVVNRERHPGSFDIVHVKDGNGHVF 44 (81)
Q Consensus 18 vG~I~~ie~~~g~~~iV~ikd~~g~~F 44 (81)
-|+|.+|.+.......|++++++|+..
T Consensus 177 ~G~I~~I~~~ekgg~~vtI~~~~G~~v 203 (249)
T 1ci3_M 177 AGVITAIAKADDGSAEVKIRTEDGTTI 203 (249)
T ss_dssp CEEEEEEEECTTSCEEEEEECTTSCEE
T ss_pred CeEEEEEEEcCCCCEEEEEECCCCCEE
Confidence 588999998766666888999888743
No 70
>3iz5_a 60S ribosomal protein L27 (L27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_a
Probab=22.51 E-value=8.8 Score=25.87 Aligned_cols=24 Identities=29% Similarity=0.531 Sum_probs=20.3
Q ss_pred CCCCcEEEEECCCCcceEEEEEEE
Q psy1800 1 MFPGNLCMITGGRNLGRVGTVVNR 24 (81)
Q Consensus 1 fe~G~~~mVtgG~n~GrvG~I~~i 24 (81)
+++|.+|++..|+.+|+-.+|...
T Consensus 5 ~kpGkVvivl~GryaGkKaVivk~ 28 (136)
T 3iz5_a 5 LKPGKAVILLQGRFAGRKAVIVRV 28 (136)
T ss_dssp CCCCCSCCCCCSSSSCCCCBCSCC
T ss_pred ccCCEEEEEeccccCCcEEEEEEe
Confidence 578999999999999997776643
No 71
>3sno_A Hypothetical aminotransferase; D-aminoacid aminotransferase-like PLP-dependent enzymes, STR genomics; HET: MSE; 1.60A {Corynebacterium glutamicum}
Probab=21.45 E-value=98 Score=22.33 Aligned_cols=38 Identities=18% Similarity=0.213 Sum_probs=25.0
Q ss_pred CCcEEEEEcCCCCEEEEeeccEEEEecCCcceEecCCCcee
Q psy1800 30 SFDIVHVKDGNGHVFATRLNNVFIIGKGTKAFCSKPKRNFV 70 (81)
Q Consensus 30 ~~~iV~ikd~~g~~F~T~~~nVfvIGk~~kp~IsLp~~kgi 70 (81)
.++-+.+-|.+| .-++-.+|+|++= +.-|++-|...|+
T Consensus 204 G~de~l~l~~~G-v~E~s~sN~f~~~--~g~l~TPp~~~~i 241 (315)
T 3sno_A 204 GFDDVIFTDGDR-VLEGATSTVVSFK--GDKIRTPSPGGDI 241 (315)
T ss_dssp -CEEEEEEETTE-EEEESSSEEEEEE--TTEEEEECCC---
T ss_pred CCCEEEEEeCCC-cEEcCCeeEEEEE--CCEEEcCCCCCCc
Confidence 344455567889 9999999999983 3457776666554
No 72
>2y9a_D Small nuclear ribonucleoprotein SM D3; splicing-RNA complex, PRE-mRNA splicing, spliceosome, snRNP biogenesis, SM site, SM fold, heteromeric heptameric ring; 3.60A {Homo sapiens} PDB: 2y9b_D 2y9c_D 2y9d_D 3pgw_Z* 3cw1_D
Probab=21.08 E-value=1.3e+02 Score=19.25 Aligned_cols=49 Identities=20% Similarity=0.333 Sum_probs=30.4
Q ss_pred ceEEEEEEEEEecC-CCcEEEEEcCCCCEEEEeeccEEEEecCCcceEecCCC
Q psy1800 16 GRVGTVVNRERHPG-SFDIVHVKDGNGHVFATRLNNVFIIGKGTKAFCSKPKR 67 (81)
Q Consensus 16 GrvG~I~~ie~~~g-~~~iV~ikd~~g~~F~T~~~nVfvIGk~~kp~IsLp~~ 67 (81)
=..|++...+.++. .=+-+...+.+|+ ...++.+|+=|. +=-+|++|..
T Consensus 27 ~~~G~L~~~D~~MNi~L~dv~e~~~~g~--~~~l~~v~IRGn-nI~~I~lpd~ 76 (126)
T 2y9a_D 27 VYRGKLIEAEDNMNCQMSNITVTYRDGR--VAQLEQVYIRGS-KIRFLILPDM 76 (126)
T ss_dssp EEEEEEEEECTTSCEEEEEEEEECTTSC--CEEEEEEEECGG-GEEEEECCSS
T ss_pred EEEEEEEEEcCceEEEEeeEEEEcCCCc--EeecccEEEeCC-EEEEEEcccc
Confidence 34688888876654 2122222334554 567788888776 5567788775
Done!