RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1800
(81 letters)
>d2giaa1 d.18.1.4 (A:56-221) Guide RNA binding protein gBP25
{Trypanosoma brucei [TaxId: 5691]}
Length = 166
Score = 26.2 bits (57), Expect = 0.38
Identities = 11/45 (24%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
Query: 13 RNLGRVGTVVNRERHPGSFDIVHVKDGN---GHVFATRLNNVFII 54
R R + P +FD+VH D + GH+ + F++
Sbjct: 2 RRPSLAQQRARRAQLPPAFDVVHWNDEDISRGHLLRVLHRDTFVV 46
>d2je8a5 c.1.8.3 (A:331-678) Five-domain beta-mannosidase, domain
3 {Bacteroides thetaiotaomicron [TaxId: 818]}
Length = 348
Score = 25.8 bits (55), Expect = 0.67
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 33 IVHVKDGNGHVFATRLNNVFIIGKGT 58
+V+ KD +G F +N + + KG
Sbjct: 5 VVNEKDKDGESFYFEVNGIPMFAKGA 30
>d1pxfa_ b.40.4.4 (A:) Structure-specific tRNA-binding protein
TRBP111 {Escherichia coli [TaxId: 562]}
Length = 111
Score = 24.5 bits (53), Expect = 1.3
Identities = 12/59 (20%), Positives = 20/59 (33%), Gaps = 7/59 (11%)
Query: 17 RVGTVVNRERHPGS----FDIVHVKDGNGHVFATRLNNVF---IIGKGTKAFCSKPKRN 68
RVG +V +RH + V V + + ++GK C+ K
Sbjct: 15 RVGKIVEVKRHENADKLYIVQVDVGQKTLQTVTSLVPYYSEEELMGKTVVVLCNLQKAK 73
>d1ntga_ b.40.4.4 (A:) C-terminal domain of metazoan tyrosyl-tRNA
synthetase, TyrRS {Human (Homo sapiens) [TaxId: 9606]}
Length = 171
Score = 24.6 bits (53), Expect = 1.4
Identities = 8/30 (26%), Positives = 14/30 (46%), Gaps = 4/30 (13%)
Query: 17 RVGTVVNRERHPGSFD---IVHVKDGNGHV 43
RVG ++ E+HP + D + + G
Sbjct: 12 RVGKIITVEKHPDA-DSLYVEKIDVGEAEP 40
>d1nuua_ c.26.1.3 (A:) Cytosolic NMN/NAMN adenylyltransferase
{Human (Homo sapiens), FKSG76 [TaxId: 9606]}
Length = 233
Score = 24.5 bits (52), Expect = 1.7
Identities = 5/16 (31%), Positives = 8/16 (50%), Gaps = 4/16 (25%)
Query: 28 PGSFDIVHVKDGNGHV 43
GSF+ + N H+
Sbjct: 10 CGSFNPIT----NMHL 21
>d1kr2a_ c.26.1.3 (A:) Nicotinamide mononucleotide (NMN)
adenylyltransferase {Human (Homo sapiens) [TaxId:
9606]}
Length = 271
Score = 24.4 bits (52), Expect = 2.1
Identities = 5/16 (31%), Positives = 8/16 (50%), Gaps = 4/16 (25%)
Query: 28 PGSFDIVHVKDGNGHV 43
GSF+ + N H+
Sbjct: 10 CGSFNPIT----NMHL 21
>d1fl0a_ b.40.4.4 (A:) EMAP II {Human (Homo sapiens) [TaxId:
9606]}
Length = 164
Score = 24.2 bits (52), Expect = 2.2
Identities = 4/14 (28%), Positives = 9/14 (64%)
Query: 17 RVGTVVNRERHPGS 30
R+G ++ +HP +
Sbjct: 9 RIGCIITARKHPDA 22
>d1gd7a_ b.40.4.4 (A:) TRBP111 homolog CsaA {Thermus thermophilus
[TaxId: 274]}
Length = 109
Score = 23.9 bits (51), Expect = 2.2
Identities = 6/25 (24%), Positives = 10/25 (40%)
Query: 17 RVGTVVNRERHPGSFDIVHVKDGNG 41
RVG V+ E H + + +
Sbjct: 13 RVGRVLRAEPHEKARKPSYKLWVDL 37
>d1pyba_ b.40.4.4 (A:) Structure-specific tRNA-binding protein
TRBP111 {Aquifex aeolicus [TaxId: 63363]}
Length = 107
Score = 23.4 bits (50), Expect = 3.3
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 17 RVGTVVNRERHPGSFDIVHVKDGNGHVF 44
RV V++ ER GS ++ + G
Sbjct: 14 RVAKVLSAERVEGSEKLLKLTLSLGDEE 41
>d2joya1 b.34.5.7 (A:1-96) Ribosomal protein L14e {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 96
Score = 23.1 bits (50), Expect = 3.5
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 3 PGNLCMITGGRNLGRVGTVVN 23
G +C+ GR G +V+
Sbjct: 6 VGRICVKVKGREAGSKCVIVD 26
>d1tfua_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 157
Score = 23.4 bits (49), Expect = 4.1
Identities = 9/16 (56%), Positives = 9/16 (56%), Gaps = 4/16 (25%)
Query: 28 PGSFDIVHVKDGNGHV 43
PGSFD V GHV
Sbjct: 7 PGSFDPVT----LGHV 18
>d1zvfa1 b.82.1.20 (A:1-175) 3-hydroxyanthranilate-3,4-dioxygenase
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 175
Score = 23.2 bits (50), Expect = 5.0
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 16 GRVGTVVNRERHPGSFD 32
VG VV ++R G D
Sbjct: 104 DTVGIVVEQDRPGGEND 120
>d1coza_ c.26.1.2 (A:) CTP:glycerol-3-phosphate
cytidylyltransferase {Bacillus subtilis [TaxId: 1423]}
Length = 126
Score = 22.9 bits (48), Expect = 5.4
Identities = 10/51 (19%), Positives = 22/51 (43%), Gaps = 8/51 (15%)
Query: 28 PGSFDIVHVKDGNGHV----FATRLNNVFIIGKGTKAFCSKPKRNFVSPRQ 74
G+FD++H GH+ A +L + ++ T F + ++ +
Sbjct: 7 YGTFDLLH----WGHIKLLERAKQLGDYLVVAISTDEFNLQKQKKAYHSYE 53
>d1vlha_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase
{Thermotoga maritima [TaxId: 2336]}
Length = 157
Score = 23.0 bits (48), Expect = 5.5
Identities = 8/16 (50%), Positives = 9/16 (56%), Gaps = 4/16 (25%)
Query: 28 PGSFDIVHVKDGNGHV 43
PGSFD + GHV
Sbjct: 6 PGSFDPIT----LGHV 17
>d1od6a_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase
{Thermus thermophilus [TaxId: 274]}
Length = 160
Score = 23.0 bits (48), Expect = 6.0
Identities = 8/16 (50%), Positives = 10/16 (62%), Gaps = 4/16 (25%)
Query: 28 PGSFDIVHVKDGNGHV 43
PGSFD + NGH+
Sbjct: 6 PGSFDPLT----NGHL 17
>d1qjca_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase
{Escherichia coli [TaxId: 562]}
Length = 157
Score = 22.6 bits (47), Expect = 7.2
Identities = 7/16 (43%), Positives = 10/16 (62%), Gaps = 4/16 (25%)
Query: 28 PGSFDIVHVKDGNGHV 43
PG+FD + NGH+
Sbjct: 6 PGTFDPIT----NGHI 17
>d1o6ba_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase
{Bacillus subtilis [TaxId: 1423]}
Length = 163
Score = 22.7 bits (47), Expect = 7.7
Identities = 8/16 (50%), Positives = 9/16 (56%), Gaps = 4/16 (25%)
Query: 28 PGSFDIVHVKDGNGHV 43
PGSFD V GH+
Sbjct: 7 PGSFDPVT----YGHL 18
>d2do3a1 b.34.5.5 (A:462-523) Transcription elongation factor SPT5
{Human (Homo sapiens) [TaxId: 9606]}
Length = 62
Score = 21.9 bits (47), Expect = 8.0
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 3 PGNLCMITGGRNLGRVGTVVNRERH 27
G+ + GR G G +V E +
Sbjct: 13 MGDHVKVIAGRFEGDTGLIVRVEEN 37
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.325 0.142 0.454
Gapped
Lambda K H
0.267 0.0687 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 317,096
Number of extensions: 12478
Number of successful extensions: 44
Number of sequences better than 10.0: 1
Number of HSP's gapped: 44
Number of HSP's successfully gapped: 23
Length of query: 81
Length of database: 2,407,596
Length adjustment: 47
Effective length of query: 34
Effective length of database: 1,762,286
Effective search space: 59917724
Effective search space used: 59917724
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.0 bits)