BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy18005
(135 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VX8|D Chain D, Crystal Structure Of Arabidopsis Thaliana Atg7ntd-Atg3
Complex
pdb|3VX8|A Chain A, Crystal Structure Of Arabidopsis Thaliana Atg7ntd-Atg3
Complex
Length = 323
Score = 62.8 bits (151), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 62/144 (43%), Gaps = 13/144 (9%)
Query: 5 PGSPGTILNFIPFVSSIEPTFWYKLSEIKLDEDKLKETPRPIQGYFNHNG---------- 54
P P IL F P SS++ FW+ S +KLD+ + ++P I G++ G
Sbjct: 2 PHMPAIILQFAPLNSSVDEGFWHSFSSLKLDKLGIDDSPISITGFYGPCGHPQVSNHLTL 61
Query: 55 ---SCRLYINXXXXXXXXXXXXDHFAEGTLLNLNSLESFKSYDKTELLLKRGQIILQAME 111
S L G L N N++ESF DK LL I + ++
Sbjct: 62 LSESLPLDEQSLIASTSHGNRNKCPVPGILYNTNTVESFNKLDKQSLLKAEANKIWEDIQ 121
Query: 112 DGDIFENLKLLTSFFVLTFANLQK 135
G E+ +L F V++FA+L+K
Sbjct: 122 SGKALEDPSVLPRFLVISFADLKK 145
>pdb|3VX6|A Chain A, Crystal Structure Of Kluyveromyces Marxianus Atg7ntd
pdb|3VX7|A Chain A, Crystal Structure Of Kluyveromyces Marxianus Atg7ntd-Atg10
Complex
Length = 283
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 70/129 (54%), Gaps = 9/129 (6%)
Query: 12 LNFIP-FVSSIEPTFWYKLSEIKLDEDKLKETPRPI--QGYFNHNGSCRLYINXXXXXXX 68
L F P F S ++ +F+++LS +KLD KL + + Q N S L I+
Sbjct: 9 LKFAPSFQSFVDSSFFHELSRLKLDIFKLDSDEKALYTQLDLNQFTSNVLAISLRDDSFQ 68
Query: 69 XXXXXDH--FAEGTLLNLNSLESFKSYDKTELLLKRGQIILQAMEDGDIFENLKLLTSFF 126
+H +G LLN N++E FK+ +K + + ++GQ +LQ + D+ E + SF+
Sbjct: 69 KPDNDEHNIILKGYLLNFNTIELFKNCNKIQFIKEKGQELLQRGLENDLNE----IISFY 124
Query: 127 VLTFANLQK 135
+++FA+L+K
Sbjct: 125 MISFADLKK 133
>pdb|4GSJ|A Chain A, Crystal Structure Of Atg7 Ntd K14a F16a D18a Mutant
Length = 291
Score = 45.4 bits (106), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 68/137 (49%), Gaps = 13/137 (9%)
Query: 7 SPGTILNFIP-FVSSIEPTFWYKLSEIKLDEDKLKETPRPIQGYFN-HN-----GSCRLY 59
S +L++ P F S++ +F+ +LS +KLD KL T +P+ + HN L+
Sbjct: 4 SSERVLSYAPAFASALATSFFQELSRLKLDVLKLDSTCQPLTVNLDLHNIPKSADQVPLF 63
Query: 60 INXXXXXXXXXXXXDHFA-EGTLLNLNSLESFKSYDKTELLLKRGQIILQAMEDGDIFEN 118
+ + +G++ N N L+ FK+ DK L +R L+ EDG ++
Sbjct: 64 LTNRSFEKHNNKRTNEVPLQGSIFNFNVLDEFKNLDKQLFLHQRA---LECWEDG--IKD 118
Query: 119 LKLLTSFFVLTFANLQK 135
+ SF +++FA+L+K
Sbjct: 119 INKCVSFVIISFADLKK 135
>pdb|4GSK|A Chain A, Crystal Structure Of An Atg7-Atg10 Crosslinked Complex
pdb|4GSK|B Chain B, Crystal Structure Of An Atg7-Atg10 Crosslinked Complex
Length = 615
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 68/137 (49%), Gaps = 13/137 (9%)
Query: 7 SPGTILNFIP-FVSSIEPTFWYKLSEIKLDEDKLKETPRPIQGYFN-HN-----GSCRLY 59
S +L++ P F S ++ +F+ +LS +KLD KL T +P+ + HN L+
Sbjct: 4 SSERVLSYAPAFKSFLDTSFFQELSRLKLDVLKLDSTSQPLTVNLDLHNIPKSADQVPLF 63
Query: 60 INXXXXXXXXXXXXDHFA-EGTLLNLNSLESFKSYDKTELLLKRGQIILQAMEDGDIFEN 118
+ + +G++ N N L+ FK+ DK L +R L+ EDG ++
Sbjct: 64 LTNRSFEKHNNKRTNEVPLQGSIFNFNVLDEFKNLDKQLFLHQRA---LECWEDG--IKD 118
Query: 119 LKLLTSFFVLTFANLQK 135
+ SF +++FA+L+K
Sbjct: 119 INKCVSFVIISFADLKK 135
>pdb|3T7H|A Chain A, Atg8 Transfer From Atg7 To Atg3: A Distinctive E1-E2
Architecture And Mechanism In The Autophagy Pathway
pdb|3T7H|B Chain B, Atg8 Transfer From Atg7 To Atg3: A Distinctive E1-E2
Architecture And Mechanism In The Autophagy Pathway
Length = 291
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 68/137 (49%), Gaps = 13/137 (9%)
Query: 7 SPGTILNFIP-FVSSIEPTFWYKLSEIKLDEDKLKETPRPIQGYFN-HN-----GSCRLY 59
S +L++ P F S ++ +F+ +LS +KLD KL T +P+ + HN L+
Sbjct: 4 SSERVLSYAPAFKSFLDTSFFQELSRLKLDVLKLDSTCQPLTVNLDLHNIPKSADQVPLF 63
Query: 60 INXXXXXXXXXXXXDHFA-EGTLLNLNSLESFKSYDKTELLLKRGQIILQAMEDGDIFEN 118
+ + +G++ N N L+ FK+ DK L +R L+ EDG ++
Sbjct: 64 LTNRSFEKHNNKRTNEVPLQGSIFNFNVLDEFKNLDKQLFLHQRA---LECWEDG--IKD 118
Query: 119 LKLLTSFFVLTFANLQK 135
+ SF +++FA+L+K
Sbjct: 119 INKCVSFVIISFADLKK 135
>pdb|3RUJ|A Chain A, Crystal Structure Of N-Terminal Region Of Yeast Atg7
Length = 296
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 68/137 (49%), Gaps = 13/137 (9%)
Query: 7 SPGTILNFIP-FVSSIEPTFWYKLSEIKLDEDKLKETPRPIQGYFN-HN-----GSCRLY 59
S +L++ P F S ++ +F+ +LS +KLD KL T +P+ + HN L+
Sbjct: 4 SSERVLSYAPAFKSFLDTSFFQELSRLKLDVLKLDSTCQPLTVNLDLHNIPKSADQVPLF 63
Query: 60 INXXXXXXXXXXXXDHFA-EGTLLNLNSLESFKSYDKTELLLKRGQIILQAMEDGDIFEN 118
+ + +G++ N N L+ FK+ DK L +R L+ EDG ++
Sbjct: 64 LTNRSFEKHNNKRTNEVPLQGSIFNFNVLDEFKNLDKQLFLHQRA---LECWEDG--IKD 118
Query: 119 LKLLTSFFVLTFANLQK 135
+ SF +++FA+L+K
Sbjct: 119 INKCVSFVIISFADLKK 135
>pdb|3T7G|A Chain A, Atg8 Transfer From Atg7 To Atg3: A Distinctive E1-E2
Architecture And Mechanism In The Autophagy Pathway
pdb|3T7G|B Chain B, Atg8 Transfer From Atg7 To Atg3: A Distinctive E1-E2
Architecture And Mechanism In The Autophagy Pathway
Length = 291
Score = 43.5 bits (101), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 68/137 (49%), Gaps = 13/137 (9%)
Query: 7 SPGTILNFIP-FVSSIEPTFWYKLSEIKLDEDKLKETPRPIQGYFN-HN-----GSCRLY 59
S +L++ P F S ++ +F+ +LS +KLD KL T +P+ + HN L+
Sbjct: 4 SSERVLSYAPAFKSFLDTSFFQELSRLKLDVLKLDSTCQPLTVNLDLHNIPKSADQVPLF 63
Query: 60 INXXXXXXXXXXXXDHFA-EGTLLNLNSLESFKSYDKTELLLKRGQIILQAMEDGDIFEN 118
+ + +G++ N N L+ FK+ DK L +R L+ EDG ++
Sbjct: 64 LTNRSFEKHNNKRTNEVPLQGSIFNFNVLDEFKNLDKQLFLHQRA---LECWEDG--IKD 118
Query: 119 LKLLTSFFVLTFANLQK 135
+ SF +++FA+L+K
Sbjct: 119 INKCVSFVIISFADLKK 135
>pdb|3T7F|A Chain A, Atg8 Transfer From Atg7 To Atg3: A Distinctive E1-E2
Architecture And Mechanism In The Autophagy Pathway
Length = 291
Score = 43.5 bits (101), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 68/137 (49%), Gaps = 13/137 (9%)
Query: 7 SPGTILNFIP-FVSSIEPTFWYKLSEIKLDEDKLKETPRPIQGYFN-HN-----GSCRLY 59
S +L++ P F S ++ +F+ +LS +KLD KL T +P+ + HN L+
Sbjct: 4 SSERVLSYAPAFKSFLDTSFFQELSRLKLDVLKLDSTCQPLTVNLDLHNIPKSADQVPLF 63
Query: 60 INXXXXXXXXXXXXDHFA-EGTLLNLNSLESFKSYDKTELLLKRGQIILQAMEDGDIFEN 118
+ + +G++ N N L+ FK+ DK L +R L+ EDG ++
Sbjct: 64 LTNRSFEKHNNKRTNEVPLQGSIFNFNVLDEFKNLDKQLFLHQRA---LECWEDG--IKD 118
Query: 119 LKLLTSFFVLTFANLQK 135
+ SF +++FA+L+K
Sbjct: 119 INKCVSFVIISFADLKK 135
>pdb|3VH2|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Atg7 (1-613)
Length = 616
Score = 43.5 bits (101), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 68/137 (49%), Gaps = 13/137 (9%)
Query: 7 SPGTILNFIP-FVSSIEPTFWYKLSEIKLDEDKLKETPRPIQGYFN-HN-----GSCRLY 59
S +L++ P F S ++ +F+ +LS +KLD KL T +P+ + HN L+
Sbjct: 5 SSERVLSYAPAFKSFLDTSFFQELSRLKLDVLKLDSTCQPLTVNLDLHNIPKSADQVPLF 64
Query: 60 INXXXXXXXXXXXXDHFA-EGTLLNLNSLESFKSYDKTELLLKRGQIILQAMEDGDIFEN 118
+ + +G++ N N L+ FK+ DK L +R L+ EDG ++
Sbjct: 65 LTNRSFEKHNNKRTNEVPLQGSIFNFNVLDEFKNLDKQLFLHQRA---LECWEDG--IKD 119
Query: 119 LKLLTSFFVLTFANLQK 135
+ SF +++FA+L+K
Sbjct: 120 INKCVSFVIISFADLKK 136
>pdb|4GSL|A Chain A, Crystal Structure Of An Atg7-Atg3 Crosslinked Complex
pdb|4GSL|B Chain B, Crystal Structure Of An Atg7-Atg3 Crosslinked Complex
Length = 615
Score = 43.5 bits (101), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 68/137 (49%), Gaps = 13/137 (9%)
Query: 7 SPGTILNFIP-FVSSIEPTFWYKLSEIKLDEDKLKETPRPIQGYFN-HN-----GSCRLY 59
S +L++ P F S ++ +F+ +LS +KLD KL T +P+ + HN L+
Sbjct: 4 SSERVLSYAPAFKSFLDTSFFQELSRLKLDVLKLDSTCQPLTVNLDLHNIPKSADQVPLF 63
Query: 60 INXXXXXXXXXXXXDHFA-EGTLLNLNSLESFKSYDKTELLLKRGQIILQAMEDGDIFEN 118
+ + +G++ N N L+ FK+ DK L +R L+ EDG ++
Sbjct: 64 LTNRSFEKHNNKRTNEVPLQGSIFNFNVLDEFKNLDKQLFLHQRA---LECWEDG--IKD 118
Query: 119 LKLLTSFFVLTFANLQK 135
+ SF +++FA+L+K
Sbjct: 119 INKCVSFVIISFADLKK 135
>pdb|3VH1|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Atg7 (1-595)
Length = 598
Score = 43.5 bits (101), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 68/137 (49%), Gaps = 13/137 (9%)
Query: 7 SPGTILNFIP-FVSSIEPTFWYKLSEIKLDEDKLKETPRPIQGYFN-HN-----GSCRLY 59
S +L++ P F S ++ +F+ +LS +KLD KL T +P+ + HN L+
Sbjct: 5 SSERVLSYAPAFKSFLDTSFFQELSRLKLDVLKLDSTCQPLTVNLDLHNIPKSADQVPLF 64
Query: 60 INXXXXXXXXXXXXDHFA-EGTLLNLNSLESFKSYDKTELLLKRGQIILQAMEDGDIFEN 118
+ + +G++ N N L+ FK+ DK L +R L+ EDG ++
Sbjct: 65 LTNRSFEKHNNKRTNEVPLQGSIFNFNVLDEFKNLDKQLFLHQRA---LECWEDG--IKD 119
Query: 119 LKLLTSFFVLTFANLQK 135
+ SF +++FA+L+K
Sbjct: 120 INKCVSFVIISFADLKK 136
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 26.2 bits (56), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 78 EGTLLNLNSLESFKSYDKTELLLKRGQII 106
+G L+ L++ S+ Y+ TELLLK G +
Sbjct: 89 KGGLVPLHNACSYGHYEVTELLLKHGACV 117
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.139 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,636,313
Number of Sequences: 62578
Number of extensions: 121239
Number of successful extensions: 296
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 291
Number of HSP's gapped (non-prelim): 13
length of query: 135
length of database: 14,973,337
effective HSP length: 88
effective length of query: 47
effective length of database: 9,466,473
effective search space: 444924231
effective search space used: 444924231
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 46 (22.3 bits)