Query psy18005
Match_columns 135
No_of_seqs 104 out of 195
Neff 5.7
Searched_HMMs 13730
Date Fri Aug 16 19:52:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy18005.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/18005hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1szpa1 a.60.4.1 (A:81-144) DN 22.9 31 0.0023 19.8 2.7 28 84-111 24-57 (64)
2 d1nj1a2 d.68.5.1 (A:411-481) C 17.7 21 0.0015 21.0 1.1 13 81-93 1-13 (71)
3 d1e5ka_ c.68.1.8 (A:) Molybden 16.7 18 0.0013 23.4 0.6 14 79-92 173-186 (188)
4 d1yvwa1 a.204.1.4 (A:4-95) Pho 14.1 79 0.0057 19.4 3.3 25 86-110 44-68 (92)
5 d2a7wa1 a.204.1.4 (A:4-94) Pho 13.3 86 0.0062 19.1 3.3 25 86-110 45-69 (91)
6 d1ppjj_ f.23.14.1 (J:) Subunit 13.1 47 0.0034 17.0 1.6 22 98-119 5-26 (33)
7 d1u7ka_ a.73.1.1 (A:) AKV caps 12.7 26 0.0019 23.3 0.5 35 8-49 6-40 (131)
8 d1b22a_ a.60.4.1 (A:) DNA repa 12.7 56 0.0041 19.0 2.1 28 84-111 31-64 (70)
9 d1cmza_ a.91.1.1 (A:) Galpha i 11.3 82 0.0059 19.3 2.8 28 85-112 43-70 (128)
10 d1kfta_ a.60.2.3 (A:) Excinucl 11.0 68 0.005 17.5 2.0 31 80-110 18-54 (56)
No 1
>d1szpa1 a.60.4.1 (A:81-144) DNA repair protein Rad51, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=22.92 E-value=31 Score=19.82 Aligned_cols=28 Identities=18% Similarity=0.290 Sum_probs=22.5
Q ss_pred ccchHHhhccCHHHHHH------HHHHHHHHhhh
Q psy18005 84 LNSLESFKSYDKTELLL------KRGQIILQAME 111 (135)
Q Consensus 84 ~NTiE~Fk~~DK~~ll~------~~~~~i~~~i~ 111 (135)
+||+|+.....+.+|.+ ..+++|.+++.
T Consensus 24 ~~Tve~ia~~t~~~L~~i~Gi~e~~a~KIi~~A~ 57 (64)
T d1szpa1 24 LHTAEAVAYAPRKDLLEIKGISEAKADKLLNEAA 57 (64)
T ss_dssp CCSHHHHHHSCSHHHHTSTTCCHHHHHHHHHHHH
T ss_pred CCcHHHHHhCCHHHHHHcCCCCHHHHHHHHHHHH
Confidence 79999999999999884 56677777664
No 2
>d1nj1a2 d.68.5.1 (A:411-481) C-terminal domain of ProRS {Arhaeon (Methanothermobacter thermautotrophicus) [TaxId: 145262]}
Probab=17.65 E-value=21 Score=21.04 Aligned_cols=13 Identities=15% Similarity=0.192 Sum_probs=10.5
Q ss_pred eeeccchHHhhcc
Q psy18005 81 LLNLNSLESFKSY 93 (135)
Q Consensus 81 l~N~NTiE~Fk~~ 93 (135)
|...||+||||..
T Consensus 1 I~~~~t~eE~k~~ 13 (71)
T d1nj1a2 1 IREAETLEEASRI 13 (71)
T ss_dssp EEECSSHHHHHHH
T ss_pred CeecCCHHHHHHH
Confidence 4678999999954
No 3
>d1e5ka_ c.68.1.8 (A:) Molybdenum cofactor biosynthesis protein MobA {Escherichia coli [TaxId: 562]}
Probab=16.72 E-value=18 Score=23.42 Aligned_cols=14 Identities=21% Similarity=0.437 Sum_probs=11.6
Q ss_pred eeeeeccchHHhhc
Q psy18005 79 GTLLNLNSLESFKS 92 (135)
Q Consensus 79 G~l~N~NTiE~Fk~ 92 (135)
+.+.|.||.|++..
T Consensus 173 ~~~~ninTpeDl~r 186 (188)
T d1e5ka_ 173 DAFVNVNTPEELAR 186 (188)
T ss_dssp TTTCCCCSHHHHHT
T ss_pred CcccCCCCHHHHHh
Confidence 45789999999875
No 4
>d1yvwa1 a.204.1.4 (A:4-95) Phosphoribosyl-ATP pyrophosphatase HisE {Bacillus cereus [TaxId: 1396]}
Probab=14.06 E-value=79 Score=19.41 Aligned_cols=25 Identities=16% Similarity=0.262 Sum_probs=20.1
Q ss_pred chHHhhccCHHHHHHHHHHHHHHhh
Q psy18005 86 SLESFKSYDKTELLLKRGQIILQAM 110 (135)
Q Consensus 86 TiE~Fk~~DK~~ll~~~~~~i~~~i 110 (135)
+++..++-||.+++.++|+-|+..+
T Consensus 44 ~i~Aa~~~~k~~~i~E~ADLlyHll 68 (92)
T d1yvwa1 44 VIIACKNNDKEEVVKEMVDVFYHCF 68 (92)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 5667788899999999999887654
No 5
>d2a7wa1 a.204.1.4 (A:4-94) Phosphoribosyl-ATP pyrophosphatase HisE {Chromobacterium violaceum [TaxId: 536]}
Probab=13.27 E-value=86 Score=19.13 Aligned_cols=25 Identities=24% Similarity=0.317 Sum_probs=19.8
Q ss_pred chHHhhccCHHHHHHHHHHHHHHhh
Q psy18005 86 SLESFKSYDKTELLLKRGQIILQAM 110 (135)
Q Consensus 86 TiE~Fk~~DK~~ll~~~~~~i~~~i 110 (135)
+++..++-||.++..++|+-++..+
T Consensus 45 ~i~A~~~~~~~~vi~EaADLlyHll 69 (91)
T d2a7wa1 45 TLMASKDKDKLHLVREVADLWFHTM 69 (91)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 5677788889999999998887654
No 6
>d1ppjj_ f.23.14.1 (J:) Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=13.11 E-value=47 Score=17.01 Aligned_cols=22 Identities=9% Similarity=0.419 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHhhhcCCcccCc
Q psy18005 98 LLLKRGQIILQAMEDGDIFENL 119 (135)
Q Consensus 98 ll~~~~~~i~~~i~sg~~~~dp 119 (135)
.+...++.||+.+-.|+-.+|.
T Consensus 5 afD~~~d~i~d~~NkGklWKdI 26 (33)
T d1ppjj_ 5 AFDQGADAIYEHINEGKLWKHI 26 (33)
T ss_dssp HHHHHHHHHHHHHTTTTSHHHH
T ss_pred HHhhhHHHHHHHhcccchHHHH
Confidence 4677888999999888765543
No 7
>d1u7ka_ a.73.1.1 (A:) AKV capsid {AKV murine leukemia virus [TaxId: 11791]}
Probab=12.70 E-value=26 Score=23.33 Aligned_cols=35 Identities=23% Similarity=0.355 Sum_probs=28.7
Q ss_pred CCcceeeeCCccCCChhHHHHHhhCccccccCCCCCeeeEEE
Q psy18005 8 PGTILNFIPFVSSIEPTFWYKLSEIKLDEDKLKETPRPIQGY 49 (135)
Q Consensus 8 ~~~~LqF~pf~S~vd~sFW~~Ls~~KLd~~KLde~~~~I~g~ 49 (135)
++.++||+||+| +.|.+.|=+-=+++|.|+.++.-
T Consensus 6 ~~~~~~y~PFs~-------sDL~nwK~~~p~fse~P~~~i~~ 40 (131)
T d1u7ka_ 6 GNGQLQYWPFSS-------SDLYNWKNNNPSFSEDPGKLTAL 40 (131)
T ss_dssp TTSSEEECCCCH-------HHHHHHHHTSCCTTTCHHHHHHH
T ss_pred CCCceeeecccH-------HHHHHHHHhCCchhhCHHHHHHH
Confidence 345789999998 47888888999999999887663
No 8
>d1b22a_ a.60.4.1 (A:) DNA repair protein Rad51, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.65 E-value=56 Score=18.96 Aligned_cols=28 Identities=21% Similarity=0.305 Sum_probs=21.9
Q ss_pred ccchHHhhccCHHHHHH------HHHHHHHHhhh
Q psy18005 84 LNSLESFKSYDKTELLL------KRGQIILQAME 111 (135)
Q Consensus 84 ~NTiE~Fk~~DK~~ll~------~~~~~i~~~i~ 111 (135)
|+|+|+.....+..|++ ..+++|.+++.
T Consensus 31 ~~Tv~~i~~at~~~L~~i~G~~e~~A~KIi~~a~ 64 (70)
T d1b22a_ 31 FHTVEAVAYAPKKELINIKGISEAKADKILAEAA 64 (70)
T ss_dssp CSSGGGBTSSBHHHHHTTTTCSTTHHHHHHHHHH
T ss_pred cchHHHHHhCCHHHHHHcCCCCHHHHHHHHHHHH
Confidence 68999999999998885 45667777664
No 9
>d1cmza_ a.91.1.1 (A:) Galpha interacting protein, GaIP {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.34 E-value=82 Score=19.26 Aligned_cols=28 Identities=11% Similarity=0.204 Sum_probs=19.7
Q ss_pred cchHHhhccCHHHHHHHHHHHHHHhhhc
Q psy18005 85 NSLESFKSYDKTELLLKRGQIILQAMED 112 (135)
Q Consensus 85 NTiE~Fk~~DK~~ll~~~~~~i~~~i~s 112 (135)
-.+|+||+..-.+.+.+.|..|++.-.+
T Consensus 43 ~~ve~fk~~~~~~~~~~~a~~Iy~~yi~ 70 (128)
T d1cmza_ 43 LACEELKAEANQHVVDEKARLIYEDYVS 70 (128)
T ss_dssp HHHHHGGGTCCSHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHccCCHHHHHHHHHHHHHHHhc
Confidence 4688998754345566778899988543
No 10
>d1kfta_ a.60.2.3 (A:) Excinuclease UvrC C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=10.99 E-value=68 Score=17.49 Aligned_cols=31 Identities=13% Similarity=0.197 Sum_probs=21.4
Q ss_pred eeeeccchHHhhccCHHHHHH------HHHHHHHHhh
Q psy18005 80 TLLNLNSLESFKSYDKTELLL------KRGQIILQAM 110 (135)
Q Consensus 80 ~l~N~NTiE~Fk~~DK~~ll~------~~~~~i~~~i 110 (135)
.+..|.|++..++.+..+|.+ ..|+.|++.+
T Consensus 18 L~~~F~s~~~i~~As~eeL~~v~GIg~~~A~~I~~~l 54 (56)
T d1kfta_ 18 LLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIFWSL 54 (56)
T ss_dssp HHHHHSCHHHHHHCCHHHHTTSSSTTSHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHhhHHHHHhcCCCCHHHHHHHHHHH
Confidence 356678899999888888863 3445555544
Done!