RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy18005
         (135 letters)



>gnl|CDD|233388 TIGR01381, E1_like_apg7, E1-like protein-activating enzyme
           Gsa7p/Apg7p.  This model represents a family of
           eukaryotic proteins found in animals, plants, and
           yeasts, including Apg7p (YHR171W) from Saccharomyces
           cerevisiae and GSA7 from Pichia pastoris. Members are
           about 650 to 700 residues in length and include a
           central domain of about 150 residues shared with the
           ThiF/MoeB/HesA family of proteins. A low level of
           similarity to ubiquitin-activating enzyme E1 is
           described in a paper on peroxisome autophagy mediated by
           GSA7, and is the basis of the name ubiquitin activating
           enzyme E1-like protein. Members of the family appear to
           be involved in protein lipidation events analogous to
           ubiquitination and required for membrane fusion events
           during autophagy.
          Length = 664

 Score = 90.4 bits (224), Expect = 4e-22
 Identities = 44/129 (34%), Positives = 77/129 (59%), Gaps = 7/129 (5%)

Query: 14  FIPFVSSIEPTFWYKLSEIKLDEDKLKETPRPIQGYFNHNG----SCRLYINSSSFS--- 66
           F+PFVS ++  FW ++S++KL++ KL +TP+ I G  + +      C L ++  S S   
Sbjct: 1   FVPFVSCVDTGFWNEVSKLKLNKWKLDDTPKCISGQLSLHQTEGFKCHLSLSYDSLSSLE 60

Query: 67  STSSESFDHFAEGTLLNLNSLESFKSYDKTELLLKRGQIILQAMEDGDIFENLKLLTSFF 126
           ST+         G LLN N++ESFK  DK++LL    + I ++++     ++  LL+ FF
Sbjct: 61  STTGTHAQLSVSGILLNYNTVESFKKVDKSDLLRSEAEKIWESIQTRKWLQDPSLLSQFF 120

Query: 127 VLTFANLQK 135
           +++FA+L+K
Sbjct: 121 IISFADLKK 129


>gnl|CDD|219499 pfam07653, SH3_2, Variant SH3 domain.  SH3 (Src homology 3) domains
           are often indicative of a protein involved in signal
           transduction related to cytoskeletal organisation. First
           described in the Src cytoplasmic tyrosine kinase. The
           structure is a partly opened beta barrel.
          Length = 53

 Score = 26.7 bits (60), Expect = 1.0
 Identities = 6/20 (30%), Positives = 12/20 (60%)

Query: 87  LESFKSYDKTELLLKRGQII 106
           +  + + D  EL LK+G ++
Sbjct: 5   IFDYVATDPNELSLKKGDVV 24


>gnl|CDD|227558 COG5233, GRH1, Peripheral Golgi membrane protein [Intracellular
           trafficking and secretion].
          Length = 417

 Score = 27.8 bits (61), Expect = 2.2
 Identities = 22/87 (25%), Positives = 29/87 (33%), Gaps = 7/87 (8%)

Query: 14  FIPFVSSIEPTFWYKLSEIKLDEDKLKETPRPIQGYFNHNGSCRLYIN--SSSFSSTSSE 71
              F+SS+  +F+ K SE      K          Y   NG C L         SS SS 
Sbjct: 333 AKNFLSSLPLSFYGKKSE-----HKSGTQRAVTTSYHEENGECPLCFKHEEKDRSSESSG 387

Query: 72  SFDHFAEGTLLNLNSLESFKSYDKTEL 98
            +   A    L+  S       D+ E 
Sbjct: 388 EYTPLAPPPSLSSISSSDAGISDEEEA 414


>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional.
          Length = 880

 Score = 26.5 bits (59), Expect = 4.7
 Identities = 8/18 (44%), Positives = 11/18 (61%)

Query: 86  SLESFKSYDKTELLLKRG 103
            LE+FK Y   +L L+ G
Sbjct: 7   RLENFKCYADADLRLEDG 24


>gnl|CDD|139876 PRK13814, pyrB, aspartate carbamoyltransferase catalytic subunit;
           Provisional.
          Length = 310

 Score = 26.2 bits (57), Expect = 6.5
 Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 5/41 (12%)

Query: 81  LLNLNSLESFKSYDKTELLLKRGQIIL-QAMEDGDIFENLK 120
           LLN+ SL    + D  E L++R    L Q ME   +FE LK
Sbjct: 8   LLNMRSL----TRDHIEKLIQRANYFLTQGMEKNSVFETLK 44


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.317    0.134    0.384 

Gapped
Lambda     K      H
   0.267   0.0635    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,658,737
Number of extensions: 563531
Number of successful extensions: 511
Number of sequences better than 10.0: 1
Number of HSP's gapped: 509
Number of HSP's successfully gapped: 12
Length of query: 135
Length of database: 10,937,602
Length adjustment: 87
Effective length of query: 48
Effective length of database: 7,078,804
Effective search space: 339782592
Effective search space used: 339782592
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.4 bits)