RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy18005
         (135 letters)



>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 242

 Score = 26.4 bits (56), Expect = 1.2
 Identities = 5/38 (13%), Positives = 15/38 (39%)

Query: 57  RLYINSSSFSSTSSESFDHFAEGTLLNLNSLESFKSYD 94
            L I+ +   S  S   ++  +    +  +L+   + +
Sbjct: 205 ILDISRTRIHSLPSYGLENLKKLRARSTYNLKKLPTLE 242


>d1bz7b1 b.1.1.1 (B:1-122) Immunoglobulin heavy chain variable
           domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId:
           10090]}
          Length = 122

 Score = 25.1 bits (54), Expect = 2.2
 Identities = 14/78 (17%), Positives = 25/78 (32%), Gaps = 3/78 (3%)

Query: 8   PGTILNFIPFVSSIEPTFWYKL---SEIKLDEDKLKETPRPIQGYFNHNGSCRLYINSSS 64
           P   L ++ ++SS   +  Y         +  D  K T            +   Y     
Sbjct: 41  PEKGLEWVAYISSGGSSINYADTVKGRFTISRDNPKNTLFLQMTSLRSEDTAIYYCTRGG 100

Query: 65  FSSTSSESFDHFAEGTLL 82
             + S   FD++ +G  L
Sbjct: 101 TGTRSLYYFDYWGQGATL 118


>d1uhfa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 69

 Score = 23.6 bits (51), Expect = 4.8
 Identities = 8/31 (25%), Positives = 15/31 (48%)

Query: 87  LESFKSYDKTELLLKRGQIILQAMEDGDIFE 117
           L  + S +  +L    G+ IL   +DG+ + 
Sbjct: 14  LYPYSSVEPGDLTFTEGEEILVTQKDGEWWT 44


>d1wlpb1 b.34.2.1 (B:229-281) p47pox (neutrophil cytosolic factor 1)
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 53

 Score = 22.9 bits (49), Expect = 5.3
 Identities = 4/30 (13%), Positives = 15/30 (50%)

Query: 87  LESFKSYDKTELLLKRGQIILQAMEDGDIF 116
           ++++ + +  E+ L  G+ +    +  D +
Sbjct: 6   IKAYTAVEGDEVSLLEGEAVEVIHKLLDGW 35


>d2bura1 b.3.6.1 (A:4-200) Protocatechuate-3,4-dioxygenase, alpha
          chain {Acinetobacter calcoaceticus, adp1 [TaxId: 471]}
          Length = 202

 Score = 23.9 bits (51), Expect = 6.8
 Identities = 10/36 (27%), Positives = 13/36 (36%)

Query: 38 KLKETPRPIQGYFNHNGSCRLYINSSSFSSTSSESF 73
          +LKETP    G + H G      N   F      + 
Sbjct: 1  ELKETPSQTGGPYVHIGLLPKQANIEVFEHNLDNNL 36


>d1grja1 a.2.1.1 (A:2-79) GreA transcript cleavage protein,
           N-terminal domain {Escherichia coli [TaxId: 562]}
          Length = 78

 Score = 23.1 bits (50), Expect = 7.7
 Identities = 8/24 (33%), Positives = 12/24 (50%)

Query: 95  KTELLLKRGQIILQAMEDGDIFEN 118
           K+    +    I +A E GD+ EN
Sbjct: 21  KSVRRPEIIAAIAEAREHGDLKEN 44


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.134    0.384 

Gapped
Lambda     K      H
   0.267   0.0521    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 478,827
Number of extensions: 19693
Number of successful extensions: 77
Number of sequences better than 10.0: 1
Number of HSP's gapped: 77
Number of HSP's successfully gapped: 9
Length of query: 135
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 59
Effective length of database: 1,364,116
Effective search space: 80482844
Effective search space used: 80482844
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (22.8 bits)