BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy18006
(180 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3L4G|B Chain B, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|D Chain D, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|F Chain F, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|H Chain H, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|J Chain J, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|L Chain L, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|N Chain N, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|P Chain P, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
Length = 589
Score = 207 bits (527), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 98/153 (64%), Positives = 122/153 (79%)
Query: 1 MCLQTKILGSGAEVSVSIPPTRHDIIHTCDIYEDIAIAYGYNNIPKTMPRFASIARQVPL 60
M L+++++G G ++ + IPPTR DIIH CDI ED AIAYGYNNI T+P+ +IA Q PL
Sbjct: 334 MYLKSEVIGDGNQIEIEIPPTRADIIHACDIVEDAAIAYGYNNIQMTLPKTYTIANQFPL 393
Query: 61 NKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEFIPAVHIGNPKTLEFQIARTT 120
NKL++ LR D+A AGFTE LTFALCS++D++ KL + AVHI NPKT EFQ+ARTT
Sbjct: 394 NKLTELLRHDMAAAGFTEALTFALCSQEDIADKLGVDISATKAVHISNPKTAEFQVARTT 453
Query: 121 LVPGLLKTLAANKKMPLPLKLFEISDIVYKDAT 153
L+PGLLKT+AAN+KMPLPLKLFEISDIV KD+
Sbjct: 454 LLPGLLKTIAANRKMPLPLKLFEISDIVIKDSN 486
>pdb|2RHQ|B Chain B, Phers From Staphylococcus Haemolyticus- Rational Protein
Engineering And Inhibitor Studies
Length = 795
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 74/154 (48%), Gaps = 20/154 (12%)
Query: 11 GAEVSVSIPPTRHDIIHTCDIYEDIAIAYGYNNIPKTMPRFASIA------RQVPLNKLS 64
G ++V++P R DI D+ E++A YGY+ IP ++P F + RQ L
Sbjct: 444 GETLTVNVPSRRKDITIKEDLIEEVARIYGYDEIPSSLPVFGEVTSGELTDRQHKTRTLK 503
Query: 65 DQLRGDIAQAGFTEVLTFALCSRD---DVSVKLRQKMEFIPAVHIGNPKTLEFQIARTTL 121
+ L G AG + +T++L S+D D +++ R P + + P + R +L
Sbjct: 504 ETLEG----AGLNQAITYSLVSKDHAKDFALQER------PTISLLMPMSEAHATLRQSL 553
Query: 122 VPGLLKTLAAN-KKMPLPLKLFEISDIVYKDATA 154
+P L++ A N + ++L+EI + + +
Sbjct: 554 LPHLIEATAYNVARKNKDVRLYEIGRVFFGNGEG 587
>pdb|2RHS|B Chain B, Phers From Staphylococcus Haemolyticus- Rational Protein
Engineering And Inhibitor Studies
pdb|2RHS|D Chain D, Phers From Staphylococcus Haemolyticus- Rational Protein
Engineering And Inhibitor Studies
Length = 800
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 74/152 (48%), Gaps = 20/152 (13%)
Query: 11 GAEVSVSIPPTRHDIIHTCDIYEDIAIAYGYNNIPKTMPRFASIA------RQVPLNKLS 64
G ++V++P R DI D+ E++A YGY+ IP ++P F + RQ L
Sbjct: 448 GETLTVNVPSRRKDITIKEDLIEEVARIYGYDEIPSSLPVFGEVTSGELTDRQHKTRTLK 507
Query: 65 DQLRGDIAQAGFTEVLTFALCSRD---DVSVKLRQKMEFIPAVHIGNPKTLEFQIARTTL 121
+ L G AG + +T++L S+D D +++ R P + + P + R +L
Sbjct: 508 ETLEG----AGLNQAITYSLVSKDHAKDFALQER------PTISLLMPMSEAHATLRQSL 557
Query: 122 VPGLLKTLAAN-KKMPLPLKLFEISDIVYKDA 152
+P L++ A N + ++L+EI + + +
Sbjct: 558 LPHLIEATAYNVARKNKDVRLYEIGRVFFGNG 589
>pdb|2IY5|B Chain B, Phenylalanyl-Trna Synthetase From Thermus Thermophilus
Complexed With Trna And A Phenylalanyl-Adenylate Analog
Length = 785
Score = 45.1 bits (105), Expect = 2e-05, Method: Composition-based stats.
Identities = 44/151 (29%), Positives = 69/151 (45%), Gaps = 11/151 (7%)
Query: 3 LQTKILGSGAEVSVSIPPTRHDIIHTCDIYEDIAIAYGYNNIPKTMPRF----ASIARQV 58
L ++ G G V+ P R D+ D+ E++A GY IP +P F + A +
Sbjct: 431 LGCRVEGEGPTYRVTPPSHRLDLRLEEDLVEEVARIEGYETIPLALPAFFPAPDNRAVEA 490
Query: 59 PLNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEFIPAVHIGNPKTLEFQIAR 118
P K +LR ++ GF EV T++ +D R+ P + + NP E R
Sbjct: 491 PYRK-EQRLREVLSGLGFQEVYTYSFMDPEDA----RRFRLDPPRLLLLNPLAPEKAALR 545
Query: 119 TTLVPGLLKTLAANKKMPLPLK--LFEISDI 147
T L PGL++ L N + P + LFE+ +
Sbjct: 546 THLFPGLVRVLKENLDLDRPERALLFEVGRV 576
>pdb|1PYS|B Chain B, Phenylalanyl-Trna Synthetase From Thermus Thermophilus
pdb|1B7Y|B Chain B, Phenylalanyl Trna Synthetase Complexed With
Phenylalaninyl-Adenylate
pdb|1EIY|B Chain B, The Crystal Structure Of Phenylalanyl-Trna Synthetase From
Thermus Thermophilus Complexed With Cognate Trnaphe
pdb|1B70|B Chain B, Phenylalanyl Trna Synthetase Complexed With Phenylalanine
pdb|1JJC|B Chain B, Crystal Structure At 2.6a Resolution Of Phenylalanyl-trna
Synthetase Complexed With Phenylalanyl-adenylate In The
Presence Of Manganese
pdb|2AKW|B Chain B, Crystal Structure Of T.thermophilus Phenylalanyl-trna
Synthetase Complexed With P-cl-phenylalanine
pdb|2ALY|B Chain B, Crystal Structure Of T.Thermophilus Phenylalanyl-Trna
Synthetase Complexed With
5'-O-[n-(L-Tyrosyl)sulphamoyl]adenosine
pdb|2AMC|B Chain B, Crystal Structure Of Phenylalanyl-Trna Synthetase
Complexed With L- Tyrosine
pdb|3HFZ|B Chain B, Crystal Structure Of Thermus Thermophilus
Phenylalanyl-Trna Synthetase Comlexed With M-Tyrosine
pdb|3TEH|B Chain B, Crystal Structure Of Thermus Thermophilus
Phenylalanyl-Trna Synthetase Comlexed With L-Dopa
Length = 785
Score = 43.9 bits (102), Expect = 5e-05, Method: Composition-based stats.
Identities = 46/151 (30%), Positives = 69/151 (45%), Gaps = 11/151 (7%)
Query: 3 LQTKILGSGAEVSVSIPPTRHDIIHTCDIYEDIAIAYGYNNIPKTMPRF--ASIARQV-- 58
L ++ G G V+ P R D+ D+ E++A GY IP +P F A R V
Sbjct: 431 LGCRVEGEGPTYRVTPPSHRLDLRLEEDLVEEVARIQGYETIPLALPAFFPAPDNRGVEA 490
Query: 59 PLNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEFIPAVHIGNPKTLEFQIAR 118
P K +LR ++ GF EV T++ +D R+ P + + NP E R
Sbjct: 491 PYRK-EQRLREVLSGLGFQEVYTYSFMDPEDA----RRFRLDPPRLLLLNPLAPEKAALR 545
Query: 119 TTLVPGLLKTLAANKKMPLPLK--LFEISDI 147
T L PGL++ L N + P + LFE+ +
Sbjct: 546 THLFPGLVRVLKENLDLDRPERALLFEVGRV 576
>pdb|3PCO|B Chain B, Crystal Structure Of E. Coli Phenylalanine-Trna Synthetase
Complexed With Phenylalanine And Amp
pdb|3PCO|D Chain D, Crystal Structure Of E. Coli Phenylalanine-Trna Synthetase
Complexed With Phenylalanine And Amp
Length = 795
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 63/127 (49%), Gaps = 13/127 (10%)
Query: 13 EVSVSIPPTRHDIIHTCDIYEDIAIAYGYNNIPKTMPRFASI----ARQVPLNKLSDQLR 68
E P R D+ D+ E++A YGYNNIP P AS+ R+ L+ +++
Sbjct: 443 EWQAVAPSWRFDMEIEEDLVEEVARVYGYNNIPDE-PVQASLIMGTHREADLS--LKRVK 499
Query: 69 GDIAQAGFTEVLTFALCSRDDVSVKLRQKME-FIPAVHIGNPKTLEFQIARTTLVPGLLK 127
+ G+ EV+T++ V K++Q + + A+ + +P ++E R +L GLL
Sbjct: 500 TLLNDKGYQEVITYSF-----VDPKVQQMIHPGVEALLLPSPISVEMSAMRLSLWTGLLA 554
Query: 128 TLAANKK 134
T+ N+
Sbjct: 555 TVVYNQN 561
>pdb|2CXI|A Chain A, Crystal Structure Of An N-Terminal Fragment Of The
Phenylalanyl-Trna Synthetase Beta-Subunit From
Pyrococcus Horikoshii
pdb|2CXI|B Chain B, Crystal Structure Of An N-Terminal Fragment Of The
Phenylalanyl-Trna Synthetase Beta-Subunit From
Pyrococcus Horikoshii
pdb|2CXI|C Chain C, Crystal Structure Of An N-Terminal Fragment Of The
Phenylalanyl-Trna Synthetase Beta-Subunit From
Pyrococcus Horikoshii
Length = 348
Score = 33.9 bits (76), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 17/32 (53%)
Query: 10 SGAEVSVSIPPTRHDIIHTCDIYEDIAIAYGY 41
S + P R DI H DI ED+ IAYGY
Sbjct: 317 SRGRAKLKYPAFRDDIXHARDILEDVLIAYGY 348
>pdb|3PJE|A Chain A, Structure Of Enr G93s Mutant-Nad+-Triclosan Complex
pdb|3PJE|B Chain B, Structure Of Enr G93s Mutant-Nad+-Triclosan Complex
Length = 270
Score = 32.3 bits (72), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 24 DIIHTCDIYEDIAIAYGYNNIPKTMPRFASIARQVPLNKLSDQLRGDIAQA 74
DI+ CD+ ED +I + + K P+F + DQL GD A
Sbjct: 58 DIVLQCDVAEDASIDTMFAELGKVWPKFDGFVHSISFAP-GDQLDGDYVNA 107
>pdb|3PJD|A Chain A, Structure Of Enr G93a Mutant-Nad+-Triclosan Complex
pdb|3PJD|B Chain B, Structure Of Enr G93a Mutant-Nad+-Triclosan Complex
Length = 270
Score = 32.3 bits (72), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 24 DIIHTCDIYEDIAIAYGYNNIPKTMPRFASIARQVPLNKLSDQLRGDIAQA 74
DI+ CD+ ED +I + + K P+F + DQL GD A
Sbjct: 58 DIVLQCDVAEDASIDTMFAELGKVWPKFDGFVHSIAFAP-GDQLDGDYVNA 107
>pdb|1QSG|A Chain A, Crystal Structure Of Enoyl Reductase Inhibition By
Triclosan
pdb|1QSG|B Chain B, Crystal Structure Of Enoyl Reductase Inhibition By
Triclosan
pdb|1QSG|C Chain C, Crystal Structure Of Enoyl Reductase Inhibition By
Triclosan
pdb|1QSG|D Chain D, Crystal Structure Of Enoyl Reductase Inhibition By
Triclosan
pdb|1QSG|E Chain E, Crystal Structure Of Enoyl Reductase Inhibition By
Triclosan
pdb|1QSG|F Chain F, Crystal Structure Of Enoyl Reductase Inhibition By
Triclosan
pdb|1QSG|G Chain G, Crystal Structure Of Enoyl Reductase Inhibition By
Triclosan
pdb|1QSG|H Chain H, Crystal Structure Of Enoyl Reductase Inhibition By
Triclosan
Length = 265
Score = 32.3 bits (72), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 24 DIIHTCDIYEDIAIAYGYNNIPKTMPRFASIARQVPLNKLSDQLRGDIAQA 74
DI+ CD+ ED +I + + K P+F + DQL GD A
Sbjct: 61 DIVLQCDVAEDASIDTMFAELGKVWPKFDGFVHSIGFAP-GDQLDGDYVNA 110
>pdb|1DFG|A Chain A, X-Ray Structure Of Escherichia Coli Enoyl Reductase With
Bound Nad And Benzo-Diazaborine
pdb|1DFG|B Chain B, X-Ray Structure Of Escherichia Coli Enoyl Reductase With
Bound Nad And Benzo-Diazaborine
pdb|1DFH|A Chain A, X-Ray Structure Of Escherichia Coli Enoyl Reductase With
Bound Nad And Thieno-Diazaborine
pdb|1DFH|B Chain B, X-Ray Structure Of Escherichia Coli Enoyl Reductase With
Bound Nad And Thieno-Diazaborine
pdb|1DFI|A Chain A, X-Ray Structure Of Escherichia Coli Enoyl Reductase With
Bound Nad
pdb|1DFI|B Chain B, X-Ray Structure Of Escherichia Coli Enoyl Reductase With
Bound Nad
pdb|1DFI|C Chain C, X-Ray Structure Of Escherichia Coli Enoyl Reductase With
Bound Nad
pdb|1DFI|D Chain D, X-Ray Structure Of Escherichia Coli Enoyl Reductase With
Bound Nad
pdb|1QG6|A Chain A, Crystal Structure Of E. Coli Enoyl Acyl Carrier Protein
Reductase In Complex With Nad And Triclosan
pdb|1QG6|B Chain B, Crystal Structure Of E. Coli Enoyl Acyl Carrier Protein
Reductase In Complex With Nad And Triclosan
pdb|1QG6|C Chain C, Crystal Structure Of E. Coli Enoyl Acyl Carrier Protein
Reductase In Complex With Nad And Triclosan
pdb|1QG6|D Chain D, Crystal Structure Of E. Coli Enoyl Acyl Carrier Protein
Reductase In Complex With Nad And Triclosan
pdb|1D8A|A Chain A, E. Coli Enoyl ReductaseNAD+TRICLOSAN COMPLEX
pdb|1D8A|B Chain B, E. Coli Enoyl ReductaseNAD+TRICLOSAN COMPLEX
Length = 261
Score = 32.3 bits (72), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 24 DIIHTCDIYEDIAIAYGYNNIPKTMPRFASIARQVPLNKLSDQLRGDIAQA 74
DI+ CD+ ED +I + + K P+F + DQL GD A
Sbjct: 57 DIVLQCDVAEDASIDTMFAELGKVWPKFDGFVHSIGFAP-GDQLDGDYVNA 106
>pdb|1C14|A Chain A, Crystal Structure Of E Coli Enoyl Reductase-nad+-triclosan
Complex
pdb|1C14|B Chain B, Crystal Structure Of E Coli Enoyl Reductase-nad+-triclosan
Complex
pdb|1I2Z|A Chain A, E. Coli Enoyl Reductase In Complex With Nad And Brl-12654
pdb|1I2Z|B Chain B, E. Coli Enoyl Reductase In Complex With Nad And Brl-12654
pdb|1I30|A Chain A, E. Coli Enoyl Reductase +nad+sb385826
pdb|1I30|B Chain B, E. Coli Enoyl Reductase +nad+sb385826
pdb|1LX6|A Chain A, Crystal Structure Of E. Coli Enoyl Reductase-Nad+ With A
Bound Benzamide Inhibitor
pdb|1LX6|B Chain B, Crystal Structure Of E. Coli Enoyl Reductase-Nad+ With A
Bound Benzamide Inhibitor
pdb|1LXC|A Chain A, Crystal Structure Of E. Coli Enoyl Reductase-Nad+ With A
Bound Acrylamide Inhibitor
pdb|1LXC|B Chain B, Crystal Structure Of E. Coli Enoyl Reductase-Nad+ With A
Bound Acrylamide Inhibitor
pdb|1MFP|A Chain A, E. Coli Enoyl Reductase In Complex With Nad And Sb611113
pdb|1MFP|B Chain B, E. Coli Enoyl Reductase In Complex With Nad And Sb611113
pdb|2FHS|A Chain A, Structure Of Acyl Carrier Protein Bound To Fabi, The Enoyl
Reductase From Escherichia Coli
pdb|2FHS|B Chain B, Structure Of Acyl Carrier Protein Bound To Fabi, The Enoyl
Reductase From Escherichia Coli
Length = 262
Score = 32.3 bits (72), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 24 DIIHTCDIYEDIAIAYGYNNIPKTMPRFASIARQVPLNKLSDQLRGDIAQA 74
DI+ CD+ ED +I + + K P+F + DQL GD A
Sbjct: 58 DIVLQCDVAEDASIDTMFAELGKVWPKFDGFVHSIGFAP-GDQLDGDYVNA 107
>pdb|3PJF|A Chain A, Structure Of Enr G93v Mutant-Nad+-Triclosan Complex
pdb|3PJF|B Chain B, Structure Of Enr G93v Mutant-Nad+-Triclosan Complex
Length = 270
Score = 32.0 bits (71), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 24 DIIHTCDIYEDIAIAYGYNNIPKTMPRFASIARQVPLNKLSDQLRGDIAQA 74
DI+ CD+ ED +I + + K P+F + DQL GD A
Sbjct: 58 DIVLQCDVAEDASIDTMFAELGKVWPKFDGFVHSIVFAP-GDQLDGDYVNA 107
>pdb|3JXV|A Chain A, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73
Length = 356
Score = 28.1 bits (61), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 46/105 (43%), Gaps = 11/105 (10%)
Query: 37 IAYGYNNIPKTMPRFASIARQVPLNKLSDQLRGDIAQAG--FTEVLTFALCSR-----DD 89
+AYG + P T+P A++ V L LS DIA+ G F ++L D+
Sbjct: 91 LAYGESGSPPTIPANATLQFDVEL--LSWTSVRDIAKDGGIFKKILKEGDKWENPKDPDE 148
Query: 90 VSVKLRQKMEFIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKK 134
V VK ++E + + +EF + L P L K + KK
Sbjct: 149 VFVKYEARLE--DGTVVSKSEGVEFTVKDGHLCPALAKAVKTMKK 191
>pdb|3JYM|A Chain A, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73
pdb|3JYM|B Chain B, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73
Length = 377
Score = 28.1 bits (61), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 46/105 (43%), Gaps = 11/105 (10%)
Query: 37 IAYGYNNIPKTMPRFASIARQVPLNKLSDQLRGDIAQAG--FTEVLTFALCSR-----DD 89
+AYG + P T+P A++ V L LS DIA+ G F ++L D+
Sbjct: 107 LAYGESGSPPTIPANATLQFDVEL--LSWTSVRDIAKDGGIFKKILKEGDKWENPKDPDE 164
Query: 90 VSVKLRQKMEFIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKK 134
V VK ++E + + +EF + L P L K + KK
Sbjct: 165 VFVKYEARLE--DGTVVSKSEGVEFTVKDGHLCPALAKAVKTMKK 207
>pdb|1KCX|A Chain A, X-Ray Structure Of Nysgrc Target T-45
pdb|1KCX|B Chain B, X-Ray Structure Of Nysgrc Target T-45
Length = 518
Score = 27.7 bits (60), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 115 QIARTTLVPGLLKTLAANKKMPLP 138
QI +VPG +KT+ AN +M +P
Sbjct: 37 QIGENLIVPGGVKTIEANGRMVIP 60
>pdb|3HPV|A Chain A, Crystal Structure Analysis Of The 2,3-dioxygenase Lapb
From Pseudomonas Sp. Kl28
pdb|3HPV|B Chain B, Crystal Structure Analysis Of The 2,3-dioxygenase Lapb
From Pseudomonas Sp. Kl28
pdb|3HPV|C Chain C, Crystal Structure Analysis Of The 2,3-dioxygenase Lapb
From Pseudomonas Sp. Kl28
pdb|3HPV|D Chain D, Crystal Structure Analysis Of The 2,3-dioxygenase Lapb
From Pseudomonas Sp. Kl28
pdb|3HPY|A Chain A, Crystal Structure Analysis Of The 2,3-Dioxygenase Lapb
From Pseudomonas In The Complex With 4-Methylcatechol
pdb|3HPY|B Chain B, Crystal Structure Analysis Of The 2,3-Dioxygenase Lapb
From Pseudomonas In The Complex With 4-Methylcatechol
pdb|3HPY|C Chain C, Crystal Structure Analysis Of The 2,3-Dioxygenase Lapb
From Pseudomonas In The Complex With 4-Methylcatechol
pdb|3HPY|D Chain D, Crystal Structure Analysis Of The 2,3-Dioxygenase Lapb
From Pseudomonas In The Complex With 4-Methylcatechol
pdb|3HQ0|A Chain A, Crystal Structure Analysis Of The 2,3-Dioxygenase Lapb
From Pseudomonas In Complex With A Product
pdb|3HQ0|B Chain B, Crystal Structure Analysis Of The 2,3-Dioxygenase Lapb
From Pseudomonas In Complex With A Product
pdb|3HQ0|C Chain C, Crystal Structure Analysis Of The 2,3-Dioxygenase Lapb
From Pseudomonas In Complex With A Product
pdb|3HQ0|D Chain D, Crystal Structure Analysis Of The 2,3-Dioxygenase Lapb
From Pseudomonas In Complex With A Product
Length = 309
Score = 27.7 bits (60), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 13 EVSVSIPPTRHDIIHTCDIY 32
EV+V I PTRH + C IY
Sbjct: 238 EVNVDIGPTRHGVTRGCTIY 257
>pdb|1TVC|A Chain A, Fad And Nadh Binding Domain Of Methane Monooxygenase
Reductase From Methylococcus Capsulatus (Bath)
Length = 250
Score = 26.9 bits (58), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 34 DIAIAYGYNNIPKTMPRFASIARQVPLNKLSDQLRGD 70
D++ +Y N+P R + R +P + SD LR D
Sbjct: 58 DVSRSYSPANLPNPEGRLEFLIRVLPEGRFSDYLRND 94
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,984,038
Number of Sequences: 62578
Number of extensions: 182354
Number of successful extensions: 403
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 389
Number of HSP's gapped (non-prelim): 20
length of query: 180
length of database: 14,973,337
effective HSP length: 93
effective length of query: 87
effective length of database: 9,153,583
effective search space: 796361721
effective search space used: 796361721
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)