BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy18006
(180 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9VCA5|SYFB_DROME Probable phenylalanine--tRNA ligase beta subunit OS=Drosophila
melanogaster GN=CG5706 PE=2 SV=1
Length = 589
Score = 223 bits (569), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 103/153 (67%), Positives = 124/153 (81%), Gaps = 2/153 (1%)
Query: 1 MCLQTKILGSGAEVSVSIPPTRHDIIHTCDIYEDIAIAYGYNNIPKTMPRFASIARQVPL 60
M L+ K+ G + V IPPTRHD+IH CDIYED+AIAYGYNNI K++P F IA+Q PL
Sbjct: 334 MYLEAKV--DGDSLVVKIPPTRHDVIHACDIYEDVAIAYGYNNIKKSLPAFMQIAKQFPL 391
Query: 61 NKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEFIPAVHIGNPKTLEFQIARTT 120
NKL++QLR +AQAGFTE LTF LCSRDD+ KL + ++ +PAVHIGNPKTLEFQ+ RTT
Sbjct: 392 NKLTEQLREQVAQAGFTEALTFTLCSRDDIGRKLNKNIDALPAVHIGNPKTLEFQVVRTT 451
Query: 121 LVPGLLKTLAANKKMPLPLKLFEISDIVYKDAT 153
L+PGLLKTL AN+KMPLPLKLFEISD+V D +
Sbjct: 452 LLPGLLKTLVANRKMPLPLKLFEISDVVVADES 484
>sp|Q9WUA2|SYFB_MOUSE Phenylalanine--tRNA ligase beta subunit OS=Mus musculus GN=Farsb
PE=2 SV=2
Length = 589
Score = 211 bits (536), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 98/152 (64%), Positives = 123/152 (80%)
Query: 1 MCLQTKILGSGAEVSVSIPPTRHDIIHTCDIYEDIAIAYGYNNIPKTMPRFASIARQVPL 60
MCL+++++G G ++ V IPPTR D+IH CDI ED AIAYGYNNI T+P+ +IA Q PL
Sbjct: 334 MCLKSEVIGDGNQIEVEIPPTRADVIHACDIVEDAAIAYGYNNIQMTLPKTYTIANQFPL 393
Query: 61 NKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEFIPAVHIGNPKTLEFQIARTT 120
NKL++ LR D+A AGFTE LTFALCS++D++ KL + AVHI NPKT EFQ+ARTT
Sbjct: 394 NKLTELLRLDMAAAGFTEALTFALCSQEDIADKLGLDISATKAVHISNPKTAEFQVARTT 453
Query: 121 LVPGLLKTLAANKKMPLPLKLFEISDIVYKDA 152
L+PGLLKT+AAN+KMPLPLKLFEISD+V KD+
Sbjct: 454 LLPGLLKTIAANRKMPLPLKLFEISDVVVKDS 485
>sp|Q9NSD9|SYFB_HUMAN Phenylalanine--tRNA ligase beta subunit OS=Homo sapiens GN=FARSB
PE=1 SV=3
Length = 589
Score = 207 bits (528), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 98/153 (64%), Positives = 122/153 (79%)
Query: 1 MCLQTKILGSGAEVSVSIPPTRHDIIHTCDIYEDIAIAYGYNNIPKTMPRFASIARQVPL 60
M L+++++G G ++ + IPPTR DIIH CDI ED AIAYGYNNI T+P+ +IA Q PL
Sbjct: 334 MYLKSEVIGDGNQIEIEIPPTRADIIHACDIVEDAAIAYGYNNIQMTLPKTYTIANQFPL 393
Query: 61 NKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEFIPAVHIGNPKTLEFQIARTT 120
NKL++ LR D+A AGFTE LTFALCS++D++ KL + AVHI NPKT EFQ+ARTT
Sbjct: 394 NKLTELLRHDMAAAGFTEALTFALCSQEDIADKLGVDISATKAVHISNPKTAEFQVARTT 453
Query: 121 LVPGLLKTLAANKKMPLPLKLFEISDIVYKDAT 153
L+PGLLKT+AAN+KMPLPLKLFEISDIV KD+
Sbjct: 454 LLPGLLKTIAANRKMPLPLKLFEISDIVIKDSN 486
>sp|Q5R7F7|SYFB_PONAB Phenylalanine--tRNA ligase beta subunit OS=Pongo abelii GN=FARSB
PE=2 SV=1
Length = 589
Score = 203 bits (516), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 96/153 (62%), Positives = 122/153 (79%)
Query: 1 MCLQTKILGSGAEVSVSIPPTRHDIIHTCDIYEDIAIAYGYNNIPKTMPRFASIARQVPL 60
M L+++++G G ++ + IPPTR DIIH CDI ED AIAYGY+NI T+P+ +IA Q PL
Sbjct: 334 MYLKSEVIGDGNQIEIEIPPTRADIIHACDIVEDAAIAYGYSNIQMTLPKTYTIANQFPL 393
Query: 61 NKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEFIPAVHIGNPKTLEFQIARTT 120
NKL++ LR D+A AGFTE LTFALCS++D++ KL + AVHI +PKT EFQ+ARTT
Sbjct: 394 NKLTELLRHDMAAAGFTEALTFALCSQEDIADKLGVDISATKAVHISSPKTAEFQVARTT 453
Query: 121 LVPGLLKTLAANKKMPLPLKLFEISDIVYKDAT 153
L+PGLLKT+AAN+KMPLPLKLFEISDIV KD+
Sbjct: 454 LLPGLLKTIAANRKMPLPLKLFEISDIVIKDSN 486
>sp|Q19713|SYFB_CAEEL Phenylalanine--tRNA ligase beta subunit OS=Caenorhabditis elegans
GN=frs-2 PE=1 SV=2
Length = 591
Score = 189 bits (481), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 91/176 (51%), Positives = 120/176 (68%), Gaps = 6/176 (3%)
Query: 1 MCLQTKILGSGAEVSVSIPPTRHDIIHTCDIYEDIAIAYGYNNIPKTMPRFASIARQVPL 60
M L+ ++ + + + +PPTRHDI+H CDI ED+ +A+GYNN+ +P ++A P+
Sbjct: 336 MSLKAEV-AAKETLKIVVPPTRHDILHACDIAEDVGVAFGYNNLITKLPESNTVAVAFPI 394
Query: 61 NKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEFIPAVHIGNPKTLEFQIARTT 120
NKL D LR +IA AG+TE L FALCSRDD+S KLRQ AVHIGNPKTLEFQ+ART+
Sbjct: 395 NKLCDNLRIEIAAAGWTEALNFALCSRDDISSKLRQPDALSHAVHIGNPKTLEFQVARTS 454
Query: 121 LVPGLLKTLAANKKMPLPLKLFEISDIVYKDATAGTLMFTPGGNRTRDLAISRQTR 176
L+PGLLKTL++N+ MPLPLKLFE+ D++ KD+ G R LA R
Sbjct: 455 LLPGLLKTLSSNRDMPLPLKLFELQDVIVKDSNTDV-----GARNERRLAAVYYNR 505
>sp|Q550D2|SYFB_DICDI Phenylalanine--tRNA ligase beta subunit OS=Dictyostelium discoideum
GN=phesB PE=3 SV=2
Length = 617
Score = 142 bits (359), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 74/166 (44%), Positives = 100/166 (60%), Gaps = 1/166 (0%)
Query: 1 MCLQTKILGSGAEVSVSIPPTRHDIIHTCDIYEDIAIAYGYNNIPKTMPRFASIARQVPL 60
M LQ+K+ + V +P TR DI+H CDI ED+AI YGY+N+ K +P +I R P+
Sbjct: 338 MSLQSKLSDDEKSIIVDVPVTRSDIMHACDIMEDVAIGYGYDNLKKEIPNCNTIGRVQPI 397
Query: 61 NKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEFIPAVHIGNPKTLEFQIARTT 120
NKLS+ L +IA AGFTE++TF LC D L K + +V I N + EF RT
Sbjct: 398 NKLSELLANEIALAGFTEIMTFVLCQNRDNFTAL-NKADDGSSVKISNAVSEEFTEVRTN 456
Query: 121 LVPGLLKTLAANKKMPLPLKLFEISDIVYKDATAGTLMFTPGGNRT 166
LV LLK+++ANK PLPLK+FEISD+ K + + P N +
Sbjct: 457 LVSTLLKSVSANKAAPLPLKMFEISDVSIKGSLGNKDLSDPNSNNS 502
>sp|O13432|SYFB_CANAX Phenylalanine--tRNA ligase beta subunit OS=Candida albicans GN=FRS1
PE=2 SV=3
Length = 592
Score = 140 bits (352), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 69/139 (49%), Positives = 97/139 (69%), Gaps = 1/139 (0%)
Query: 14 VSVSIPPTRHDIIHTCDIYEDIAIAYGYNNIPKTMPRFAS-IARQVPLNKLSDQLRGDIA 72
+ V IP TR DI+H CDI ED+AI YGY+N+ KT P+ S +A +P+NK++D LR +
Sbjct: 337 LDVKIPITRSDILHQCDIMEDVAIGYGYDNLKKTKPQAESLVAAPLPVNKVADILRLASS 396
Query: 73 QAGFTEVLTFALCSRDDVSVKLRQKMEFIPAVHIGNPKTLEFQIARTTLVPGLLKTLAAN 132
QAG+ EV+ L S D+ L+QK + AV + NPKT+E+Q+ RTTL+PG+LKT+ N
Sbjct: 397 QAGYLEVMPLTLSSHDENFAWLKQKDDGTKAVKLENPKTIEYQVVRTTLLPGILKTVKEN 456
Query: 133 KKMPLPLKLFEISDIVYKD 151
+K LP+K+FE DIV K+
Sbjct: 457 RKHSLPIKVFECGDIVLKN 475
>sp|O42849|SYFB_SCHPO Phenylalanine--tRNA ligase beta subunit OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=frs1 PE=3 SV=1
Length = 589
Score = 137 bits (346), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 64/137 (46%), Positives = 95/137 (69%), Gaps = 2/137 (1%)
Query: 16 VSIPPTRHDIIHTCDIYEDIAIAYGYNNIPKTMPRFA-SIARQVPLNKLSDQLRGDIAQA 74
V +PP R DI+H CDI ED+ IAYGY+N+ T P + + + +N+L+D +R ++A A
Sbjct: 338 VYVPPLRADILHQCDIMEDLGIAYGYDNLKHTYPAHSVTFGKPFEVNRLADIIRNEVAYA 397
Query: 75 GFTEVLTFALCSRDDVSVKLRQKMEFIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKK 134
G++EV+ F LCS D+ LR K + AV + NPKTLEFQ+ R++L+PG+LKT+ NK
Sbjct: 398 GWSEVMPFILCSHDENYAWLR-KTDDSKAVQLANPKTLEFQVVRSSLLPGILKTVRENKN 456
Query: 135 MPLPLKLFEISDIVYKD 151
LP+K+FE+SD+ + D
Sbjct: 457 HALPIKIFEVSDVAFCD 473
>sp|P15624|SYFB_YEAST Phenylalanine--tRNA ligase beta subunit OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=FRS1 PE=1 SV=3
Length = 595
Score = 137 bits (346), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 69/140 (49%), Positives = 93/140 (66%), Gaps = 2/140 (1%)
Query: 14 VSVSIPPTRHDIIHTCDIYEDIAIAYGYNNIPK--TMPRFASIARQVPLNKLSDQLRGDI 71
+ V IP TR DI+H CDI ED A+ YG+NN+PK + IA+ +P+NK+SD R
Sbjct: 338 LHVDIPVTRPDILHACDIMEDAAVGYGFNNLPKGEKLSNANFIAKPLPINKVSDIFRVAS 397
Query: 72 AQAGFTEVLTFALCSRDDVSVKLRQKMEFIPAVHIGNPKTLEFQIARTTLVPGLLKTLAA 131
+QA + EVL LCS D+ LRQ AV + NPKTLE+Q+ RTTL+PG+LKT+
Sbjct: 398 SQATWVEVLPLTLCSHDENFKFLRQSDNGDLAVKLANPKTLEYQVVRTTLLPGILKTVKE 457
Query: 132 NKKMPLPLKLFEISDIVYKD 151
N+K LP+K+FE D+V+KD
Sbjct: 458 NRKHSLPIKVFETGDVVFKD 477
>sp|Q9SGE9|SYFB_ARATH Probable phenylalanine--tRNA ligase beta subunit OS=Arabidopsis
thaliana GN=At1g72550 PE=2 SV=1
Length = 598
Score = 130 bits (328), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 70/167 (41%), Positives = 104/167 (62%), Gaps = 9/167 (5%)
Query: 4 QTKILGSGAEVSVSIPPTRHDIIHTCDIYEDIAIAYGYNNIPKTMPRFASIARQVPLNKL 63
Q K + + V +PP+R D++H CD+ ED+AIAYG+NNIP P ASI + + LN+L
Sbjct: 341 QAKSSDNQCAIKVHVPPSRSDVLHPCDVMEDVAIAYGFNNIPTRKP--ASI-KPLTLNEL 397
Query: 64 SDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEFIPAVHIGNPKTLEFQIARTTLVP 123
+D LR +IA +TEV+T+ LCS + + + + + AV +GNP++ +F+ R L+P
Sbjct: 398 TDLLRIEIAMCVYTEVVTWLLCSHKE-NFAMLNREDVNSAVIVGNPRSADFEAMRRALMP 456
Query: 124 GLLKTLAANKKMPLPLKLFEISDIVYKDATAGTLMFTPGGNRTRDLA 170
GLLKT+ N K P P+K+FEISD+V D + G + R LA
Sbjct: 457 GLLKTVGHNNKYPKPIKIFEISDVVMLDESKDV-----GASNRRHLA 498
>sp|Q8SS40|SYFB_ENCCU Probable phenylalanine--tRNA ligase beta subunit OS=Encephalitozoon
cuniculi (strain GB-M1) GN=ECU04_0900 PE=3 SV=1
Length = 557
Score = 127 bits (319), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 58/136 (42%), Positives = 90/136 (66%), Gaps = 6/136 (4%)
Query: 16 VSIPPTRHDIIHTCDIYEDIAIAYGYNNIPKTMPRFASIARQVPLNKLSDQLRGDIAQAG 75
V + R D++H CD+ EDIAIA+G+NN + +P F + ++PLNK SD+LR +++ G
Sbjct: 322 VRVHDIRSDVLHKCDLIEDIAIAHGFNNFRRELPSFFTAGSEIPLNKFSDKLRTELSIMG 381
Query: 76 FTEVLTFALCSRDDVSVKLRQKMEFIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKKM 135
F E LT L SR++ + Q AV + NPK+ +++ RT+L+PGL+KT+A+N M
Sbjct: 382 FDEALTLTLLSREENVIDGDQ------AVVLMNPKSASYEVCRTSLIPGLMKTVASNLHM 435
Query: 136 PLPLKLFEISDIVYKD 151
+P +LFE+SD+V D
Sbjct: 436 KIPFRLFEVSDVVLLD 451
>sp|C4VA52|SYFB_NOSCE Probable phenylalanine--tRNA ligase beta subunit OS=Nosema ceranae
(strain BRL01) GN=NCER_101490 PE=3 SV=1
Length = 504
Score = 112 bits (281), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 56/154 (36%), Positives = 91/154 (59%), Gaps = 8/154 (5%)
Query: 1 MCLQTKILGSGAEVSVSIPPTRHDIIHTCDIYEDIAIAYGYNNIPKTMPRFASIARQVPL 60
M +T I+ ++V++P R D++H D+ EDIAI YG+NNI MP +I + L
Sbjct: 302 MMYKTNIIDD-KHLNVTVPSVRQDVLHKADLIEDIAICYGFNNINMVMPDINTIGSENRL 360
Query: 61 NKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEFIPAVHIGNPKTLEFQIARTT 120
NK SD+LR ++ GFTEV T L S+ D + + + N K+LE + R++
Sbjct: 361 NKFSDKLRLEMCMLGFTEVYTMVLVSKSD-------NIFGDNSAVVSNYKSLECEAVRSS 413
Query: 121 LVPGLLKTLAANKKMPLPLKLFEISDIVYKDATA 154
L PGL+K +++N +P+K+FE+ D+V+ D+ +
Sbjct: 414 LYPGLMKAVSSNLHCKIPIKIFEVGDVVFLDSES 447
>sp|A9CS50|SYFB_ENTBH Probable phenylalanine--tRNA ligase beta subunit OS=Enterocytozoon
bieneusi (strain H348) GN=EBI_21956 PE=3 SV=1
Length = 566
Score = 110 bits (274), Expect = 7e-24, Method: Composition-based stats.
Identities = 58/139 (41%), Positives = 87/139 (62%), Gaps = 9/139 (6%)
Query: 16 VSIPP-TRHDIIHTCDIYEDIAIAYGYNNIPKTMP-RFASIARQVPLNKLSDQLRGDIAQ 73
++IP R DII CDI EDI I YG+ NIP P F +I ++ LNK SD++R ++A
Sbjct: 316 IAIPSYNRLDIIDKCDIIEDILIGYGFENIPLDNPIEFYTIGKENDLNKFSDKIREEMAM 375
Query: 74 AGFTEVLTFALCSRDDVSVKLRQKMEFIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANK 133
GF E+LT L ++ + + V + PK+ E+++ RT+L+PGL KTL+ N+
Sbjct: 376 MGFNEMLTLTLLNKT-------ENIMHDYMVEVEYPKSKEYEVVRTSLLPGLFKTLSINQ 428
Query: 134 KMPLPLKLFEISDIVYKDA 152
+ LP++LFEISD+V D+
Sbjct: 429 NVKLPIQLFEISDVVLLDS 447
>sp|A6UWT1|SYFB_META3 Phenylalanine--tRNA ligase beta subunit OS=Methanococcus aeolicus
(strain Nankai-3 / ATCC BAA-1280) GN=pheT PE=3 SV=1
Length = 554
Score = 92.0 bits (227), Expect = 2e-18, Method: Composition-based stats.
Identities = 49/144 (34%), Positives = 80/144 (55%)
Query: 14 VSVSIPPTRHDIIHTCDIYEDIAIAYGYNNIPKTMPRFASIARQVPLNKLSDQLRGDIAQ 73
+ ++IP R DI++ DI +D+AI YGY N +P A+I + + K + +R +
Sbjct: 319 IKITIPAYRTDILNNMDIIKDVAINYGYENFNGNLPVVATIGEKHDIEKKFEFIRNTMIG 378
Query: 74 AGFTEVLTFALCSRDDVSVKLRQKMEFIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANK 133
G EV+ L ++D + K+ + +E V + P ++E ++ R T++P LL+TLA NK
Sbjct: 379 YGLFEVMNLTLSNQDVLFNKMNENIEDNEYVEVLKPASIEHRVVRPTILPLLLETLANNK 438
Query: 134 KMPLPLKLFEISDIVYKDATAGTL 157
LP K+FE+ D V D TL
Sbjct: 439 HNELPQKIFEVGDCVVIDEKDETL 462
>sp|A4FWS3|SYFB_METM5 Phenylalanine--tRNA ligase beta subunit OS=Methanococcus
maripaludis (strain C5 / ATCC BAA-1333) GN=pheT PE=3
SV=1
Length = 554
Score = 92.0 bits (227), Expect = 2e-18, Method: Composition-based stats.
Identities = 48/136 (35%), Positives = 76/136 (55%)
Query: 16 VSIPPTRHDIIHTCDIYEDIAIAYGYNNIPKTMPRFASIARQVPLNKLSDQLRGDIAQAG 75
V IP R+DI+H D+ E+IAI YGY +P A+ + P+ K + + + G
Sbjct: 321 VKIPAYRNDILHNVDLKEEIAINYGYEKFEGKLPSVATTGSKDPVEKKCNAMSDLMIGLG 380
Query: 76 FTEVLTFALCSRDDVSVKLRQKMEFIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKKM 135
F EV+ L ++D + K+ K+E + + P ++E ++ RT+++P LL+TL NK
Sbjct: 381 FYEVMNLTLSNQDTLFEKMNLKVEEKDYIEVLKPASIEHRVLRTSILPLLLETLYINKHH 440
Query: 136 PLPLKLFEISDIVYKD 151
LP K+FEI D V D
Sbjct: 441 SLPQKIFEIGDCVVID 456
>sp|A6VGJ4|SYFB_METM7 Phenylalanine--tRNA ligase beta subunit OS=Methanococcus
maripaludis (strain C7 / ATCC BAA-1331) GN=pheT PE=3
SV=1
Length = 554
Score = 91.7 bits (226), Expect = 3e-18, Method: Composition-based stats.
Identities = 48/136 (35%), Positives = 76/136 (55%)
Query: 16 VSIPPTRHDIIHTCDIYEDIAIAYGYNNIPKTMPRFASIARQVPLNKLSDQLRGDIAQAG 75
V IP R+DI+H D+ E+IAI YGY +P A+ + P+ K + + + G
Sbjct: 321 VKIPAYRNDILHNVDLKEEIAINYGYEKFEGKLPSVATTGSKDPVEKKCNAMSDLMIGLG 380
Query: 76 FTEVLTFALCSRDDVSVKLRQKMEFIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKKM 135
F EV+ L ++D + K+ K+E + + P ++E ++ RT+++P LL+TL NK
Sbjct: 381 FYEVMNLTLSNQDTLFEKMNLKVEEKDYIEVLKPASIEHRVLRTSILPLLLETLYINKHH 440
Query: 136 PLPLKLFEISDIVYKD 151
LP K+FEI D V D
Sbjct: 441 SLPQKIFEIGDCVIID 456
>sp|A7I615|SYFB_METB6 Phenylalanine--tRNA ligase beta subunit OS=Methanoregula boonei
(strain 6A8) GN=pheT PE=3 SV=1
Length = 542
Score = 90.9 bits (224), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 50/149 (33%), Positives = 84/149 (56%), Gaps = 3/149 (2%)
Query: 13 EVSVSIPPTRHDIIHTCDIYEDIAIAYGYNNIPKTMPRFASIARQVPLNKLSDQLRGDIA 72
+V V +P R DI+H D++ED+AIAYGY N +P SI ++ P N+++ Q R +A
Sbjct: 309 QVRVQVPCYRADIMHDWDLFEDVAIAYGYENFAVEVPPTFSIGKEHPANRIAGQARAILA 368
Query: 73 QAGFTEVLTFALCSRDDVSVKLRQKMEFIPA-VHIGNPKTLEFQIARTTLVPGLLKTLAA 131
G+ E++ F L + + ++++ E PA + + +P + E+ + RT +VP LL+ L
Sbjct: 369 GLGYLEMMPFTLTNERVLCDRMQRPGE--PATLRLMHPISEEYTVVRTDIVPLLLEMLQV 426
Query: 132 NKKMPLPLKLFEISDIVYKDATAGTLMFT 160
N+ LP +LF D++ T L F
Sbjct: 427 NRHRELPQRLFATGDVIADLLTTQRLAFV 455
>sp|O28848|SYFB_ARCFU Phenylalanine--tRNA ligase beta subunit OS=Archaeoglobus fulgidus
(strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC
100126) GN=pheT PE=3 SV=1
Length = 547
Score = 90.5 bits (223), Expect = 6e-18, Method: Composition-based stats.
Identities = 55/142 (38%), Positives = 81/142 (57%), Gaps = 7/142 (4%)
Query: 11 GAEVSVSIPPTRHDIIHTCDIYEDIAIAYGYNNIPKTMPRFASIARQVPLNKLSDQLRGD 70
G ++ V IPP R DI+H D+ ED+AI YGY NI +P + R P N + +
Sbjct: 309 GEKLKVGIPPYRADIMHEWDVIEDVAIGYGYENITPEIPPTLTFGRTHPWNDIRSLAKEI 368
Query: 71 IAQAGFTEVLTFALCSRDDVSVKLRQKME----FIPAVHIGNPKTLEFQIARTTLVPGLL 126
+ GFTEV+TF L + + K+R+K E ++P +H P T E I RT+L+P LL
Sbjct: 369 MIGLGFTEVITFTLTNEAVMYEKMRRKGEPWKDYVPVMH---PLTTEHTILRTSLLPKLL 425
Query: 127 KTLAANKKMPLPLKLFEISDIV 148
+ L+ NK +P +FE+ D+V
Sbjct: 426 ELLSYNKHHEMPQMVFEVGDVV 447
>sp|Q971D8|SYFB_SULTO Phenylalanine--tRNA ligase beta subunit OS=Sulfolobus tokodaii
(strain DSM 16993 / JCM 10545 / NBRC 100140 / 7) GN=pheT
PE=3 SV=1
Length = 540
Score = 89.7 bits (221), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 51/146 (34%), Positives = 76/146 (52%), Gaps = 9/146 (6%)
Query: 11 GAEVSVSIPPTRHDIIHTCDIYEDIAIAYGYNNIPKTMPRFASIARQVPLNKLSDQLRGD 70
G E+ V IPP R+DI+ DI E++AI YGYNN+ T + I KL LR
Sbjct: 308 GKEIEVIIPPYRNDILSQIDITEEVAITYGYNNLSPTPYKIEKIGSLSDRTKLIRVLRDL 367
Query: 71 IAQAGFTEVLTFALCSRDDVSVKLRQKMEFIPAVHIGNPKTLEFQIARTTLVPGLLKTLA 130
GFTE+ TF L S + + V I NP T+++ R +L+P +L L+
Sbjct: 368 SVGGGFTEIFTFTLIS---------ESLLLGDFVKILNPITVDYNSVRNSLLPSILIFLS 418
Query: 131 ANKKMPLPLKLFEISDIVYKDATAGT 156
N+ +P+++FEI D+V ++ T
Sbjct: 419 KNQHARMPIRVFEIGDVVIRNENTET 444
>sp|Q2NGX9|SYFB_METST Phenylalanine--tRNA ligase beta subunit OS=Methanosphaera
stadtmanae (strain DSM 3091) GN=pheT PE=3 SV=1
Length = 559
Score = 89.7 bits (221), Expect = 1e-17, Method: Composition-based stats.
Identities = 52/147 (35%), Positives = 78/147 (53%), Gaps = 1/147 (0%)
Query: 14 VSVSIPPTRHDIIHTCDIYEDIAIAYGYNNIPKTMPRFASIARQVPLNKLSDQLRGDIAQ 73
V V++P R DI+H DI E+IA+ YG+N +P +P FA++A + L +
Sbjct: 318 VRVTVPRYRIDILHEVDIIENIALGYGFNELPAQLPDFATVANPDSKRQFDQILEQVMIG 377
Query: 74 AGFTEVLTFALCSRDDVSVKLRQKMEFIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANK 133
FTE+ + L S KLR+++E V + P T + + R +L+ LL+ L NK
Sbjct: 378 LSFTEIKSLMLTSETQHYTKLRKEVE-EDRVTVAQPITQDRTMIRKSLINSLLEFLEDNK 436
Query: 134 KMPLPLKLFEISDIVYKDATAGTLMFT 160
LP K+FEI D+ Y + A T M T
Sbjct: 437 HEELPQKIFEIGDVAYINENAETKMVT 463
>sp|A0B993|SYFB_METTP Phenylalanine--tRNA ligase beta subunit OS=Methanosaeta thermophila
(strain DSM 6194 / PT) GN=pheT PE=3 SV=1
Length = 539
Score = 88.2 bits (217), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 75/141 (53%), Gaps = 4/141 (2%)
Query: 14 VSVSIPPTRHDIIHTCDIYEDIAIAYGYNNIPKTMPRFASIARQVPLNKLSDQLRGDIAQ 73
V V +P R DI+HT DI ED A +YGY N+ MPR +I R P+ +L D++R +
Sbjct: 315 VEVLVPAYRADIMHTWDIIEDAAKSYGYENLKAEMPRTLTIGRPHPMEELKDEVRDLMVG 374
Query: 74 AGFTEVLTFALCSRD-DVSVKLRQKMEFIPAVHIGNPKTLEFQIARTTLVPGLLKTLAAN 132
G+ EV+ F L + + R E +H P + I RT ++PGL++ L+ N
Sbjct: 375 LGYLEVMPFTLTNEKVHFEMMRRSAGECTRVMH---PISELHTIIRTAVLPGLMEILSLN 431
Query: 133 KKMPLPLKLFEISDIVYKDAT 153
+ LP +LF + D+V T
Sbjct: 432 QHHALPQRLFAVGDVVIDGRT 452
>sp|A2ST82|SYFB_METLZ Phenylalanine--tRNA ligase beta subunit OS=Methanocorpusculum
labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=pheT
PE=3 SV=1
Length = 540
Score = 88.2 bits (217), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 50/135 (37%), Positives = 77/135 (57%), Gaps = 1/135 (0%)
Query: 14 VSVSIPPTRHDIIHTCDIYEDIAIAYGYNNIPKTMPRFASIARQVPLNKLSDQLRGDIAQ 73
VSV IP R DI+H D+YED AIAYGY+ I ++P ++ + P+ KL +R +
Sbjct: 310 VSVDIPCYRADIMHDHDVYEDAAIAYGYDKIETSLPPSFTVGKPHPVQKLYSLVRNIMVG 369
Query: 74 AGFTEVLTFALCSRDDVSVKLRQKMEFIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANK 133
+ E F L S DVS L + E A+H+ +P + + I RT ++P L+++L+ N+
Sbjct: 370 LSYIENTPFTLTS-GDVSYSLMHRPENPAALHVLHPISEDQTIIRTDILPLLMESLSINR 428
Query: 134 KMPLPLKLFEISDIV 148
LP K+F D+V
Sbjct: 429 SRELPQKIFACGDVV 443
>sp|Q0W0X4|SYFB_UNCMA Phenylalanine--tRNA ligase beta subunit OS=Uncultured methanogenic
archaeon RC-I GN=pheT PE=3 SV=1
Length = 553
Score = 87.4 bits (215), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 79/152 (51%), Gaps = 2/152 (1%)
Query: 6 KILGSGAE-VSVSIPPTRHDIIHTCDIYEDIAIAYGYNNIPKTMPRFASIARQVPLNKLS 64
K+ +G++ + V +PP R DI+H D+ +D+ A+GYNNI + P S+ + KL
Sbjct: 308 KVAETGSDYLIVEVPPYRADILHKRDVVDDVGRAFGYNNITPSYPNTPSVGKLTEATKLG 367
Query: 65 DQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEFIPAVHIGNPKTLEFQIARTTLVPG 124
D +R + G + F L +D+V K+ + AV I NP ++ I RT+L+P
Sbjct: 368 DAIRNTMIGLGCQDTFNFILIGKDEVFGKMNLPDDGT-AVEISNPYAEQYNIVRTSLIPS 426
Query: 125 LLKTLAANKKMPLPLKLFEISDIVYKDATAGT 156
L+ L+ N P +FE+ + + D+ T
Sbjct: 427 LMIVLSNNLHRDYPQNIFEVGTVAHLDSAENT 458
>sp|A9AA58|SYFB_METM6 Phenylalanine--tRNA ligase beta subunit OS=Methanococcus
maripaludis (strain C6 / ATCC BAA-1332) GN=pheT PE=3
SV=1
Length = 554
Score = 86.3 bits (212), Expect = 1e-16, Method: Composition-based stats.
Identities = 46/136 (33%), Positives = 74/136 (54%)
Query: 16 VSIPPTRHDIIHTCDIYEDIAIAYGYNNIPKTMPRFASIARQVPLNKLSDQLRGDIAQAG 75
V IP R+DI+H D+ E+IAI YGY +P A+ + + K + + G
Sbjct: 321 VKIPAYRNDILHNVDLKEEIAINYGYEKFEGKLPSVATTGSKDSVEKKCSAMSDLMIGLG 380
Query: 76 FTEVLTFALCSRDDVSVKLRQKMEFIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKKM 135
F EV+ L ++D + K+ ++E + + P ++E ++ RT+++P LL+TL NK
Sbjct: 381 FYEVMNLTLSNQDTLFEKMNLEVEEKDYIEVLKPASIEHRVLRTSILPLLLETLYINKHH 440
Query: 136 PLPLKLFEISDIVYKD 151
LP K+FEI D V D
Sbjct: 441 SLPQKIFEIGDCVIID 456
>sp|Q6LXU2|SYFB_METMP Phenylalanine--tRNA ligase beta subunit OS=Methanococcus
maripaludis (strain S2 / LL) GN=pheT PE=3 SV=1
Length = 554
Score = 85.9 bits (211), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 74/136 (54%)
Query: 16 VSIPPTRHDIIHTCDIYEDIAIAYGYNNIPKTMPRFASIARQVPLNKLSDQLRGDIAQAG 75
V IP R+DI+ D+ E+IAI YGY +P A+ + P+ K + + G
Sbjct: 321 VKIPAYRNDILQNVDLKEEIAINYGYEKFDGKLPSVATTGSKDPVEKKCSAMSDLMIGLG 380
Query: 76 FTEVLTFALCSRDDVSVKLRQKMEFIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKKM 135
F EV+ L ++D + K+ K++ + + P ++E ++ RT+++P LL+TL NK
Sbjct: 381 FYEVMNLTLSNQDTLFEKMNLKVDEKDYIEVLKPASIEHRVLRTSILPLLLETLYINKHN 440
Query: 136 PLPLKLFEISDIVYKD 151
LP K+FE+ D V D
Sbjct: 441 ALPQKIFEVGDCVVID 456
>sp|Q12YP2|SYFB_METBU Phenylalanine--tRNA ligase beta subunit OS=Methanococcoides
burtonii (strain DSM 6242) GN=pheT PE=3 SV=1
Length = 540
Score = 85.1 bits (209), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 78/148 (52%), Gaps = 1/148 (0%)
Query: 1 MCLQTKILGSGAEVSVSIPPTRHDIIHTCDIYEDIAIAYGYNNIPKTMPRFASIARQVPL 60
M +L G +S+P R DI+H DI EDIAI YG++ I P+ A+I P+
Sbjct: 302 MRFDASVLEDGDMFEISVPTYRADILHNFDIVEDIAIGYGFDKIKSEFPKSATIGCAHPI 361
Query: 61 NKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEFIPAVHIGNPKTLEFQIARTT 120
+ +R + G++EV+ F L S+ V + + E + +P + + + RTT
Sbjct: 362 SVTRGVMREIMVSLGYSEVMPFTLTSQ-KVHFEWMNREETDDVTFVLHPISEDQTMVRTT 420
Query: 121 LVPGLLKTLAANKKMPLPLKLFEISDIV 148
++P L++ + N+ LP +LFE+ ++V
Sbjct: 421 ILPNLIEIFSLNQHHELPQRLFEVGEVV 448
>sp|Q58508|SYFB_METJA Phenylalanine--tRNA ligase beta subunit OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=pheT PE=3 SV=1
Length = 548
Score = 84.7 bits (208), Expect = 3e-16, Method: Composition-based stats.
Identities = 53/144 (36%), Positives = 76/144 (52%), Gaps = 2/144 (1%)
Query: 13 EVSVSIPPTRHDIIHTCDIYEDIAIAYGYNNIPKTMPRFASIARQVPLNKLSDQLRGDIA 72
++ V IP R DI DI E++AIAYGYN P +I L K D +R +
Sbjct: 317 KIKVFIPAYRVDIFGEIDIAEEVAIAYGYNKFSGEYPIIGTIGELNQLEKKCDFIREIMV 376
Query: 73 QAGFTEVLTFALCSRDDVSVKLRQKMEFIPAVHIGNPKTLEFQIARTTLVPGLLKTLAAN 132
GF EV+ L S D+V K + ++E + + P ++E +I R +++P L++TL N
Sbjct: 377 GFGFYEVINLML-SNDEVLFK-KMRIEDNNYIEVLKPASIEHRIVRKSILPLLMETLRIN 434
Query: 133 KKMPLPLKLFEISDIVYKDATAGT 156
K LP K+FEI D V D A T
Sbjct: 435 KHKELPQKIFEIGDCVVIDENAET 458
>sp|A6UPQ4|SYFB_METVS Phenylalanine--tRNA ligase beta subunit OS=Methanococcus vannielii
(strain SB / ATCC 35089 / DSM 1224) GN=pheT PE=3 SV=1
Length = 554
Score = 83.2 bits (204), Expect = 8e-16, Method: Composition-based stats.
Identities = 44/139 (31%), Positives = 74/139 (53%)
Query: 13 EVSVSIPPTRHDIIHTCDIYEDIAIAYGYNNIPKTMPRFASIARQVPLNKLSDQLRGDIA 72
++ V IP R+DI+H D+ E++A +GY +P A+ + P+ K + +
Sbjct: 318 KLMVKIPAYRNDILHNVDLKEEVAKNHGYEKFEGKLPSIATTGSRNPIEKKCKHYQNTML 377
Query: 73 QAGFTEVLTFALCSRDDVSVKLRQKMEFIPAVHIGNPKTLEFQIARTTLVPGLLKTLAAN 132
GF EV+ L +++ + K+ K V + P ++E ++ RT+++P LL+TL N
Sbjct: 378 GFGFFEVMNLTLSNQETLFEKMNLKYSEKDYVEVLKPASIEHRVLRTSILPMLLETLFIN 437
Query: 133 KKMPLPLKLFEISDIVYKD 151
K LP K+FEI D V D
Sbjct: 438 KHNVLPQKIFEIGDCVLID 456
>sp|Q8U260|SYFB_PYRFU Phenylalanine--tRNA ligase beta subunit OS=Pyrococcus furiosus
(strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=pheT
PE=3 SV=1
Length = 556
Score = 83.2 bits (204), Expect = 8e-16, Method: Composition-based stats.
Identities = 51/144 (35%), Positives = 73/144 (50%), Gaps = 3/144 (2%)
Query: 1 MCLQTKILGSGAEVSVSIPPTRHDIIHTCDIYEDIAIAYGYNNIPKTMPRFASIARQVPL 60
M + +IL S + V P R DI+HT D+ ED+ IAYGYNNI P+ A R P
Sbjct: 310 MMYEVEIL-SENKAKVKYPAFRDDIMHTRDVLEDVLIAYGYNNIDPEEPKLAVQGRGDPF 368
Query: 61 NKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEFIPAVHIGNPKTLEFQIARTT 120
D +R + G EV+TF L S++ K+ E I V I NP + + R
Sbjct: 369 KDFEDAIRDLMVGFGLQEVMTFNLTSKEVQFDKMNIPEEEI--VEIANPISSRWSALRKW 426
Query: 121 LVPGLLKTLAANKKMPLPLKLFEI 144
L+P L++ L+ N P ++FE+
Sbjct: 427 LLPSLMEFLSNNTHEEYPQRIFEV 450
>sp|Q8TX56|SYFB_METKA Phenylalanine--tRNA ligase beta subunit OS=Methanopyrus kandleri
(strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938)
GN=pheT PE=3 SV=1
Length = 590
Score = 82.0 bits (201), Expect = 2e-15, Method: Composition-based stats.
Identities = 46/143 (32%), Positives = 78/143 (54%), Gaps = 1/143 (0%)
Query: 14 VSVSIPPTRHDIIHTCDIYEDIAIAYGYNNIPKTMPRFASIARQVPLNKLSDQLRGDIAQ 73
V V + P R +I+H D+ ED I Y Y+ T+P F + +R + + +R +A+
Sbjct: 350 VRVFVGPRRTNILHEWDLIEDAGIMYNYDRFEPTVPDFYTPSRADREREFINVVRDTLAR 409
Query: 74 AGFTEVLTFALCSRDDVSVKLRQKMEFIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANK 133
F EV + L S ++ K+R + + AV + NP E+ I RT ++P L++ LA NK
Sbjct: 410 MKFVEVNSLTLISPEENYRKMRLEPDG-RAVKLANPIQKEYTIVRTWILPSLMRFLADNK 468
Query: 134 KMPLPLKLFEISDIVYKDATAGT 156
P P ++FE+ +++ +D A T
Sbjct: 469 HRPYPQRVFELGEVIERDEDAET 491
>sp|B1L7C0|SYFB_KORCO Phenylalanine--tRNA ligase beta subunit OS=Korarchaeum cryptofilum
(strain OPF8) GN=pheT PE=3 SV=1
Length = 556
Score = 80.5 bits (197), Expect = 6e-15, Method: Composition-based stats.
Identities = 53/161 (32%), Positives = 82/161 (50%), Gaps = 13/161 (8%)
Query: 10 SGAEVSVSIPPTRHDIIHTCDIYEDIAIAYGYNNIPKTMPR-FASIARQVPLNKLSDQLR 68
S +V V IP R D +H D+ E+++I G N I +P+ ++ R P+ K+S ++R
Sbjct: 313 SDGKVRVLIPGYRSDFLHPIDVAEEVSITLGLNKIGYELPKNVMTVGRPHPVEKVSRKVR 372
Query: 69 GDIAQAGFTEVLTFALCSRDDVSVKL-RQKMEFIPAVHIGNPKTLEFQIARTTLVPGLLK 127
+ G+ EVL + + SR + + R++ E V I NP + + + R L PGLL
Sbjct: 373 TVMIGLGYQEVLNYIMTSRASLFHAVGREERE---VVEISNPVSESYSVLRDALFPGLLA 429
Query: 128 TLAANKKMPLPLKLFEISDIVYKDATAGTLMFTPGGNRTRD 168
LA N + P K+FEI D+V D N+TRD
Sbjct: 430 FLANNTHVRYPQKVFEIGDVVLIDERL--------ENKTRD 462
>sp|B5RPL7|SYFB_BORRA Phenylalanine--tRNA ligase beta subunit OS=Borrelia recurrentis
(strain A1) GN=pheT PE=3 SV=1
Length = 564
Score = 79.3 bits (194), Expect = 1e-14, Method: Composition-based stats.
Identities = 49/167 (29%), Positives = 84/167 (50%), Gaps = 10/167 (5%)
Query: 1 MCLQTKILGSGAEVSVS-----IPPT-RHDIIHTCDIYEDIAIAYGYNNIPKTMPRFASI 54
MCL K LG A S +PP R+D +H D+ E++ I G +N +P+ +I
Sbjct: 311 MCLDLKKLGISAYFEESDTFYIMPPVYRNDFLHEVDVIEEVMIGKGLDNFKSELPKDFTI 370
Query: 55 ARQVPLNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEFIPAVHIGNPKTLEF 114
+ P+ + S +R + GF E++ L S+ D K+ K + + + NP T +
Sbjct: 371 GKLSPIEEFSRSVRNLMIGMGFQEMIYNYLGSKVDFIEKMNIKGSEL--LSVSNPMTESY 428
Query: 115 QIARTTLVPGLLKTLAANKKMPLPLKLFEISDIVYKDATA--GTLMF 159
+ R +++P LLK+ + + P P K+FEI + KD + GT+ +
Sbjct: 429 EYIRGSIIPDLLKSESISSNFPYPHKIFEIGKVALKDLVSDEGTVTY 475
>sp|A4YIL0|SYFB_METS5 Phenylalanine--tRNA ligase beta subunit OS=Metallosphaera sedula
(strain ATCC 51363 / DSM 5348) GN=pheT PE=3 SV=1
Length = 540
Score = 79.0 bits (193), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 78/147 (53%), Gaps = 9/147 (6%)
Query: 10 SGAEVSVSIPPTRHDIIHTCDIYEDIAIAYGYNNIPKTMPRFASIARQVPLNKLSDQLRG 69
+ +++V +PP R DI++ D+ EDIA+AYGY+ R AS +++ +LR
Sbjct: 306 TNKDLAVIVPPYRVDIMNYTDVAEDIAMAYGYDRFTLESGRTASRGSLSEKSEIYRKLRT 365
Query: 70 DIAQAGFTEVLTFALCSRDDVSVKLRQKMEFIPAVHIGNPKTLEFQIARTTLVPGLLKTL 129
+ AGF EV T L Q+ E AV+I NP ++E+ R +L+ L L
Sbjct: 366 LLVGAGFQEVYTLVLTKSS------YQRGE---AVNIANPISVEYDSVRNSLLWNSLVFL 416
Query: 130 AANKKMPLPLKLFEISDIVYKDATAGT 156
+ N+ P+++FEI D+V +D + T
Sbjct: 417 SNNQHSRFPVRIFEIGDVVNRDDSKDT 443
>sp|O73984|SYFB_PYRHO Phenylalanine--tRNA ligase beta subunit OS=Pyrococcus horikoshii
(strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139
/ OT-3) GN=pheT PE=1 SV=1
Length = 556
Score = 78.6 bits (192), Expect = 2e-14, Method: Composition-based stats.
Identities = 45/135 (33%), Positives = 66/135 (48%), Gaps = 2/135 (1%)
Query: 10 SGAEVSVSIPPTRHDIIHTCDIYEDIAIAYGYNNIPKTMPRFASIARQVPLNKLSDQLRG 69
S + P R DI+H DI ED+ IAYGYNNI P+ A R P D +R
Sbjct: 317 SRGRAKLKYPAFRDDIMHARDILEDVLIAYGYNNIEPEEPKLAVQGRGDPFKDFEDAIRD 376
Query: 70 DIAQAGFTEVLTFALCSRDDVSVKLRQKMEFIPAVHIGNPKTLEFQIARTTLVPGLLKTL 129
+ G EV+TF L +++ K+ E I V I NP + + R ++P L++ L
Sbjct: 377 LMVGFGLQEVMTFNLTNKEVQFKKMNIPEEEI--VEIANPISQRWSALRKWILPSLMEFL 434
Query: 130 AANKKMPLPLKLFEI 144
+ N P ++FE+
Sbjct: 435 SNNTHEEYPQRIFEV 449
>sp|Q9UYX2|SYFB_PYRAB Phenylalanine--tRNA ligase beta subunit OS=Pyrococcus abyssi
(strain GE5 / Orsay) GN=pheT PE=3 SV=1
Length = 556
Score = 78.6 bits (192), Expect = 2e-14, Method: Composition-based stats.
Identities = 43/126 (34%), Positives = 64/126 (50%), Gaps = 2/126 (1%)
Query: 19 PPTRHDIIHTCDIYEDIAIAYGYNNIPKTMPRFASIARQVPLNKLSDQLRGDIAQAGFTE 78
P R DI+H D+ ED+ IAYGYNNI P+ A R P D +R + G E
Sbjct: 326 PAFRDDIMHARDVLEDVLIAYGYNNIEPEEPKLAVQGRGDPFKDFEDAIRDLMVGFGLQE 385
Query: 79 VLTFALCSRDDVSVKLRQKMEFIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKKMPLP 138
++TF L +++ K+ E I V I NP + + R L+P L++ L+ N P
Sbjct: 386 IMTFNLTNKEVQFKKMNIPEEEI--VEIANPVSQRWSALRKWLLPSLMEFLSNNTHEEYP 443
Query: 139 LKLFEI 144
++FE+
Sbjct: 444 QRIFEV 449
>sp|P94283|SYFB_BORBU Phenylalanine--tRNA ligase beta subunit OS=Borrelia burgdorferi
(strain ATCC 35210 / B31 / CIP 102532 / DSM 4680)
GN=pheT PE=3 SV=1
Length = 566
Score = 78.2 bits (191), Expect = 3e-14, Method: Composition-based stats.
Identities = 47/168 (27%), Positives = 83/168 (49%), Gaps = 11/168 (6%)
Query: 1 MCLQTKILGSGAEV----SVSIPP-TRHDIIHTCDIYEDIAIAYGYNNIPKTMPRFASIA 55
+CL K +G + + +PP R+D +H D+ ED+ I G ++ +P+ ++
Sbjct: 312 ICLSLKKMGVNSYSKDFKNYIVPPFYRNDFLHEVDVIEDVMIGEGLSSFNPELPKAFAVG 371
Query: 56 RQVPLNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLR-QKMEFIPAVHIGNPKTLEF 114
R PL + S +R + GF E++ + S+ D ++ F+ + NP T +
Sbjct: 372 RLSPLEEFSRNVRNLMVGMGFQEMIYNYMGSKKDFIDRMNINDQNFL---KVSNPMTENY 428
Query: 115 QIARTTLVPGLLKTLAANKKMPLPLKLFEISDIVYK--DATAGTLMFT 160
+ R +++P LLK+ + + P P K+FEI + K D T GT FT
Sbjct: 429 EYIRASIIPNLLKSESVSSNFPYPHKIFEIGKVALKNLDTTEGTSTFT 476
>sp|Q468N7|SYFB_METBF Phenylalanine--tRNA ligase beta subunit OS=Methanosarcina barkeri
(strain Fusaro / DSM 804) GN=pheT PE=3 SV=1
Length = 544
Score = 77.8 bits (190), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 75/142 (52%), Gaps = 3/142 (2%)
Query: 14 VSVSIPPTRHDIIHTCDIYEDIAIAYGYNNIPKTMPRFASIARQVPLNKLSDQLRGDIAQ 73
+ V +P R DI+H D+ EDIA YGY NI +P + + P++ L + +
Sbjct: 314 IEVKVPAYRADILHNYDLVEDIAKGYGYENIKVKIPETYTPGKSHPISLLRAPVNEIMVG 373
Query: 74 AGFTEVLTFALCSRD-DVSVKLRQKMEFIPAVHIGNPKTLEFQIARTTLVPGLLKTLAAN 132
G+ EV+ F L S + RQK + + ++ +P + + + RTTL+P LL+ LA N
Sbjct: 374 LGYYEVMPFTLTSEKINFENMRRQKTDDV--TYVLHPISEDQTMIRTTLLPNLLEILALN 431
Query: 133 KKMPLPLKLFEISDIVYKDATA 154
+ LP K+FE ++V + T
Sbjct: 432 QHRELPQKIFEFGEVVNNEITG 453
>sp|B8GEX4|SYFB_METPE Phenylalanine--tRNA ligase beta subunit OS=Methanosphaerula
palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c)
GN=pheT PE=3 SV=1
Length = 546
Score = 77.8 bits (190), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 77/135 (57%), Gaps = 1/135 (0%)
Query: 14 VSVSIPPTRHDIIHTCDIYEDIAIAYGYNNIPKTMPRFASIARQVPLNKLSDQLRGDIAQ 73
+ V +P R DI+H DI+ED+A+AYGY N T+P ++I Q ++ + +R +
Sbjct: 310 IRVEVPCYRADIMHDWDIFEDVAVAYGYENFDATLPETSTIGEQSQVSVIGGAVREILTG 369
Query: 74 AGFTEVLTFALCSRDDVSVKLRQKMEFIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANK 133
G+ EV+ F L S + V+ L Q+ A+H+ +P T + I RT L+P LL+ L N+
Sbjct: 370 LGYHEVMPFTLTS-ETVTYDLMQRERSPTALHLLHPITEDQTIVRTDLLPLLLELLQMNR 428
Query: 134 KMPLPLKLFEISDIV 148
LP ++F D+V
Sbjct: 429 YRELPQRIFCTGDVV 443
>sp|P57694|SYFB_THEAC Phenylalanine--tRNA ligase beta subunit OS=Thermoplasma acidophilum
(strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=pheT PE=3 SV=1
Length = 543
Score = 77.0 bits (188), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 66/134 (49%), Gaps = 7/134 (5%)
Query: 13 EVSVSIPPTRHDIIHTCDIYEDIAIAYGYNNIPKTMPRFASIARQVPLNKLSDQLRGDIA 72
E++V +P R D++ DI EDI + G NI + + +NK+ D R +
Sbjct: 311 EIAVYVPGYRVDVMGEADIIEDILKSKGIENIEEKQIFIGKFGEPLFMNKVKDLARDTMI 370
Query: 73 QAGFTEVLTFALCSRDDVSVKLRQKMEFIPAVHIGNPKTLEFQIARTTLVPGLLKTLAAN 132
GF EV+TF L + E+ V I NPK+ ++ + R + P LL +A N
Sbjct: 371 GLGFQEVMTFVLSPASYLQ-------EYTGGVRIQNPKSEDYSVIRDKIYPDLLDLIARN 423
Query: 133 KKMPLPLKLFEISD 146
KK LP ++FEI D
Sbjct: 424 KKHSLPQRIFEIGD 437
>sp|B7J278|SYFB_BORBZ Phenylalanine--tRNA ligase beta subunit OS=Borrelia burgdorferi
(strain ZS7) GN=pheT PE=3 SV=1
Length = 566
Score = 77.0 bits (188), Expect = 6e-14, Method: Composition-based stats.
Identities = 46/168 (27%), Positives = 83/168 (49%), Gaps = 11/168 (6%)
Query: 1 MCLQTKILGSGAEV----SVSIPP-TRHDIIHTCDIYEDIAIAYGYNNIPKTMPRFASIA 55
+CL K +G + + +PP R+D +H D+ ED+ I G ++ +P+ ++
Sbjct: 312 ICLSLKKMGVNSYSKDFKNYIVPPFYRNDFLHEVDVIEDVMIGEGLSSFNPELPKAFAVG 371
Query: 56 RQVPLNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLR-QKMEFIPAVHIGNPKTLEF 114
R PL + S +R + GF E++ + S+ D ++ F+ + NP T +
Sbjct: 372 RLSPLEEFSRNVRNLMVGMGFQEMIYNYMGSKKDFIDRMNINDQNFL---KVSNPMTENY 428
Query: 115 QIARTTLVPGLLKTLAANKKMPLPLKLFEISDIVYK--DATAGTLMFT 160
+ R +++P LLK+ + + P P K+FEI + + D T GT FT
Sbjct: 429 EYIRASIIPNLLKSESVSSNFPYPHKIFEIGKVALRNLDTTEGTSTFT 476
>sp|B2S0L6|SYFB_BORHD Phenylalanine--tRNA ligase beta subunit OS=Borrelia hermsii (strain
DAH) GN=pheT PE=3 SV=1
Length = 564
Score = 75.9 bits (185), Expect = 1e-13, Method: Composition-based stats.
Identities = 50/168 (29%), Positives = 85/168 (50%), Gaps = 12/168 (7%)
Query: 1 MCLQTKILGSGAEVS-----VSIPPT-RHDIIHTCDIYEDIAIAYGYNNIPKTMPRFASI 54
MCL K LG A IPP R+D +H D+ E+I I G ++ +P+ ++
Sbjct: 311 MCLDLKKLGISAYFKELDKFYIIPPVYRNDFLHEVDVIEEIMIGRGLDSFKPELPKDFTL 370
Query: 55 ARQVPLNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKM-EFIPAVHIGNPKTLE 113
+ + + S +++ + GF E++ L SR D K+ K EF+ + NP T
Sbjct: 371 GKLSQIEEFSRKIKNLMIGMGFQEMIYNYLGSRTDFIEKMNIKSDEFLS---VANPMTEG 427
Query: 114 FQIARTTLVPGLLKTLAANKKMPLPLKLFEISDIVYKDATA--GTLMF 159
++ R ++VP LLK+ + + P P K+FEI + KD ++ GT+ +
Sbjct: 428 YEYVRGSIVPDLLKSESISSNFPYPHKIFEIGKVALKDLSSVDGTMTY 475
>sp|B5RM71|SYFB_BORDL Phenylalanine--tRNA ligase beta subunit OS=Borrelia duttonii
(strain Ly) GN=pheT PE=3 SV=1
Length = 564
Score = 75.9 bits (185), Expect = 1e-13, Method: Composition-based stats.
Identities = 48/167 (28%), Positives = 83/167 (49%), Gaps = 10/167 (5%)
Query: 1 MCLQTKILGSGAEVSVS-----IPPT-RHDIIHTCDIYEDIAIAYGYNNIPKTMPRFASI 54
MCL K LG A S +PP R+D +H D+ E++ I G +N +P+ +I
Sbjct: 311 MCLDLKKLGISAYFEESDTFYIMPPVYRNDFLHEVDVIEEVMIGKGLDNFKSELPKDFTI 370
Query: 55 ARQVPLNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEFIPAVHIGNPKTLEF 114
+ P+ + S +R + GF E++ L S+ D K+ K + + + NP T +
Sbjct: 371 GKLSPIEEFSRSVRNLMIGMGFQEMIYNYLGSKVDFIEKMNIKGSEL--LSVSNPMTESY 428
Query: 115 QIARTTLVPGLLKTLAANKKMPLPLKLFEISDIVYKDATA--GTLMF 159
+ R +++ LLK+ + + P P K+FEI + KD + GT+ +
Sbjct: 429 EYIRGSIISDLLKSESISSNFPYPHKIFEIGKVALKDLVSDEGTVTY 475
>sp|Q4J8Q0|SYFB_SULAC Phenylalanine--tRNA ligase beta subunit OS=Sulfolobus
acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 /
NBRC 15157 / NCIMB 11770) GN=pheT PE=3 SV=1
Length = 542
Score = 75.5 bits (184), Expect = 2e-13, Method: Composition-based stats.
Identities = 52/154 (33%), Positives = 77/154 (50%), Gaps = 11/154 (7%)
Query: 3 LQTKILGSGAEVSVSIPPTRHDIIHTCDIYEDIAIAYGYNNIPKTMPRFASIARQVPLNK 62
TK+L EV+V PP R DI+ D+ E+IA+ GY+ + + + +
Sbjct: 303 FDTKVLNDVVEVTV--PPYRVDILSQIDLVEEIAMTIGYDKLSPKDYTIKATGKLSAETE 360
Query: 63 LSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEFIPAVHIGNPKTLEFQIARTTLV 122
L LR AGF+E+ TF L S D R + E++ V NP T+E+ R +L+
Sbjct: 361 LIRTLRDLSIGAGFSEIFTFIL-SNDK-----RLRNEYVSIV---NPVTVEYNAVRNSLI 411
Query: 123 PGLLKTLAANKKMPLPLKLFEISDIVYKDATAGT 156
P LL L N+ +P+ +FEI D+V KD T
Sbjct: 412 PTLLNFLKYNQHAIMPVYVFEIGDVVIKDKRTDT 445
>sp|Q8PTA5|SYFB_METMA Phenylalanine--tRNA ligase beta subunit OS=Methanosarcina mazei
(strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833
/ OCM 88) GN=pheT PE=3 SV=1
Length = 545
Score = 74.7 bits (182), Expect = 3e-13, Method: Composition-based stats.
Identities = 44/142 (30%), Positives = 74/142 (52%), Gaps = 3/142 (2%)
Query: 14 VSVSIPPTRHDIIHTCDIYEDIAIAYGYNNIPKTMPRFASIARQVPLNKLSDQLRGDIAQ 73
V V +P R DI+H D+ EDIA YGY NI +P + P++ + + +
Sbjct: 314 VEVRVPAYRADILHNYDLVEDIAKGYGYENIKVKIPETYTAGMSHPISLMRAPVNEIMVG 373
Query: 74 AGFTEVLTFALCSRD-DVSVKLRQKMEFIPAVHIGNPKTLEFQIARTTLVPGLLKTLAAN 132
G+ EV+ F L S + R+K + + ++ +P + + + RTT++P LL+ LA N
Sbjct: 374 LGYYEVMPFTLTSEKVNFENMCREKTDDV--TYVLHPISEDQTMLRTTVLPNLLEILALN 431
Query: 133 KKMPLPLKLFEISDIVYKDATA 154
+ LP K+FE ++V + T
Sbjct: 432 QHRELPQKIFEFGEVVSNETTG 453
>sp|O26864|SYFB_METTH Phenylalanine--tRNA ligase beta subunit OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=pheT PE=1 SV=2
Length = 549
Score = 74.3 bits (181), Expect = 4e-13, Method: Composition-based stats.
Identities = 46/147 (31%), Positives = 75/147 (51%), Gaps = 2/147 (1%)
Query: 10 SGAEVSVSIPPTRHDIIHTCDIYEDIAIAYGYNNIPKTMPRFASIARQVPLNKLSDQLRG 69
S EV IP R DI+H D+ E+IA+ + I +P A+IA + ++ +R
Sbjct: 312 SDDEVVAVIPAYRVDILHEVDLVENIAVQHCIGRIEPELPDIATIAEEDTWSRADASIRE 371
Query: 70 DIAQAGFTEVLTFALCSRDDVSVKLRQKMEFIPAVHIGNPKTLEFQIARTTLVPGLLKTL 129
+ GF EV++ L S + S R ++E V + P + + + R +L+ GLL+
Sbjct: 372 VMVGLGFQEVMSLMLTSEE--SHYRRMRLEEDERVEVAQPISQDRTMIRKSLLNGLLEFF 429
Query: 130 AANKKMPLPLKLFEISDIVYKDATAGT 156
NK LP K+FE+ D+VY + + T
Sbjct: 430 EDNKHEDLPQKIFEVGDVVYINPESET 456
>sp|Q661A7|SYFB_BORGA Phenylalanine--tRNA ligase beta subunit OS=Borrelia garinii (strain
PBi) GN=pheT PE=3 SV=1
Length = 566
Score = 74.3 bits (181), Expect = 4e-13, Method: Composition-based stats.
Identities = 47/168 (27%), Positives = 81/168 (48%), Gaps = 11/168 (6%)
Query: 1 MCLQTKILGSGAEV----SVSIPP-TRHDIIHTCDIYEDIAIAYGYNNIPKTMPRFASIA 55
+CL K +G + + +PP R+D +H D+ ED+ I G + +P+ +I
Sbjct: 312 ICLNLKKMGVSSYSRDFKNYIVPPFYRNDFLHEVDVIEDVMIGEGLASFYPELPKAFTIG 371
Query: 56 RQVPLNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLR-QKMEFIPAVHIGNPKTLEF 114
R L + S +R + GF E++ + SR D ++ F+ + NP T +
Sbjct: 372 RLSALEEFSRNVRNLMMGMGFQEMIYNYMGSRKDFIDRMNINDQNFL---KVSNPMTENY 428
Query: 115 QIARTTLVPGLLKTLAANKKMPLPLKLFEISDIVYK--DATAGTLMFT 160
+ R +++P LLK+ + + P P K+FE+ + K DA GT FT
Sbjct: 429 EYIRASIIPNLLKSESVSSNFPYPHKIFEVGKVALKNLDAAEGTSTFT 476
>sp|P95960|SYFB_SULSO Phenylalanine--tRNA ligase beta subunit OS=Sulfolobus solfataricus
(strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=pheT
PE=3 SV=1
Length = 544
Score = 74.3 bits (181), Expect = 4e-13, Method: Composition-based stats.
Identities = 47/143 (32%), Positives = 72/143 (50%), Gaps = 8/143 (5%)
Query: 14 VSVSIPPTRHDIIHTCDIYEDIAIAYGYNNIPKTMPRFASIARQVPLNKLSDQLRGDIAQ 73
+ V++P R DII+ DI EDIA++ GYNN+ + + L L ++R
Sbjct: 311 IRVTVPQYRVDIINEIDIVEDIAMSIGYNNLEPSKYISTNYGSYDYLTLLERKMRELSIG 370
Query: 74 AGFTEVLTFALCSRDDVSVKLRQKMEFIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANK 133
AGF EV F L + + L K V I NP + E+ R +L+P LL L+ N+
Sbjct: 371 AGFVEVFNFVLIKNEKI---LDSKY-----VKILNPISEEYNAVRNSLIPILLDFLSKNQ 422
Query: 134 KMPLPLKLFEISDIVYKDATAGT 156
P+++FE D+V D++ T
Sbjct: 423 HAKFPIRIFETGDVVIYDSSTDT 445
>sp|Q8TPF7|SYFB_METAC Phenylalanine--tRNA ligase beta subunit OS=Methanosarcina
acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 /
C2A) GN=pheT PE=3 SV=1
Length = 545
Score = 73.6 bits (179), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 74/142 (52%), Gaps = 3/142 (2%)
Query: 14 VSVSIPPTRHDIIHTCDIYEDIAIAYGYNNIPKTMPRFASIARQVPLNKLSDQLRGDIAQ 73
V V +P R DI+H D+ EDIA YGY NI +P + + P++ + + +
Sbjct: 314 VEVKVPAYRADILHNYDLVEDIAKGYGYENIKVKVPETYTPGKSHPISLMRASVNEIMVG 373
Query: 74 AGFTEVLTFALCSRD-DVSVKLRQKMEFIPAVHIGNPKTLEFQIARTTLVPGLLKTLAAN 132
G+ EV+ F L S + R K + + ++ +P + + + RTT++P LL+ L+ N
Sbjct: 374 LGYYEVMPFTLTSEKINFENMCRPKTDDV--TYVLHPISEDQTMIRTTVLPNLLEILSLN 431
Query: 133 KKMPLPLKLFEISDIVYKDATA 154
+ LP K+FE ++V + T
Sbjct: 432 QHRELPQKIFEFGEVVSNETTG 453
>sp|Q2FLL1|SYFB_METHJ Phenylalanine--tRNA ligase beta subunit OS=Methanospirillum
hungatei (strain JF-1 / DSM 864) GN=pheT PE=3 SV=1
Length = 545
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 74/135 (54%), Gaps = 1/135 (0%)
Query: 14 VSVSIPPTRHDIIHTCDIYEDIAIAYGYNNIPKTMPRFASIARQVPLNKLSDQLRGDIAQ 73
VS+ IP R DI+H D+YED+AI G+ N+ +P + + P+ L+ +R +
Sbjct: 310 VSIRIPCYRADIMHEWDVYEDVAIGAGFGNLEAELPATFATGCEHPIIALASAIRDICSG 369
Query: 74 AGFTEVLTFALCSRDDVSVKLRQKMEFIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANK 133
G+ EV+ F L S +DV Q+ A+H+ +P + E + RT L+P LL L NK
Sbjct: 370 LGYLEVMPFTL-SNEDVMYTRMQREPDPKALHVLHPISEEQTLVRTDLLPLLLDLLRMNK 428
Query: 134 KMPLPLKLFEISDIV 148
+ LP ++F D+V
Sbjct: 429 RRELPQRIFHTGDVV 443
>sp|C3MJ88|SYFB_SULIL Phenylalanine--tRNA ligase beta subunit OS=Sulfolobus islandicus
(strain L.S.2.15 / Lassen #1) GN=pheT PE=3 SV=1
Length = 545
Score = 72.4 bits (176), Expect = 1e-12, Method: Composition-based stats.
Identities = 43/143 (30%), Positives = 72/143 (50%), Gaps = 8/143 (5%)
Query: 14 VSVSIPPTRHDIIHTCDIYEDIAIAYGYNNIPKTMPRFASIARQVPLNKLSDQLRGDIAQ 73
+ V++P R DI++ D+ EDIA++ GYNN+ + + + L ++R
Sbjct: 311 IRVTVPQYRVDILNEIDVVEDIAMSIGYNNLEPSKYISTNYGSYDYMTLLERKIRELGIG 370
Query: 74 AGFTEVLTFALCSRDDVSVKLRQKMEFIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANK 133
AG+ E+ F L +K+ V I NP T E+ R +L+PGLL L+ N+
Sbjct: 371 AGYVEISNFVLIKD--------EKLFSNKYVKILNPVTEEYNAVRNSLIPGLLDFLSKNQ 422
Query: 134 KMPLPLKLFEISDIVYKDATAGT 156
P+++FE D+V D++ T
Sbjct: 423 HAKFPIRVFETGDVVVYDSSTDT 445
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.137 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,982,968
Number of Sequences: 539616
Number of extensions: 2435714
Number of successful extensions: 5161
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 216
Number of HSP's successfully gapped in prelim test: 108
Number of HSP's that attempted gapping in prelim test: 4695
Number of HSP's gapped (non-prelim): 364
length of query: 180
length of database: 191,569,459
effective HSP length: 110
effective length of query: 70
effective length of database: 132,211,699
effective search space: 9254818930
effective search space used: 9254818930
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)