Query psy18006
Match_columns 180
No_of_seqs 116 out of 1028
Neff 6.7
Searched_HMMs 46136
Date Fri Aug 16 19:53:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy18006.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/18006hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02265 probable phenylalanyl 100.0 4.8E-43 1E-47 323.7 15.5 156 10-165 349-511 (597)
2 TIGR00471 pheT_arch phenylalan 100.0 1.8E-42 4E-47 317.4 15.0 161 2-164 306-473 (551)
3 PRK00629 pheT phenylalanyl-tRN 100.0 5.1E-42 1.1E-46 325.3 16.5 168 2-173 429-603 (791)
4 PRK09616 pheT phenylalanyl-tRN 100.0 2.4E-42 5.2E-47 316.7 13.7 162 2-164 303-471 (552)
5 TIGR00472 pheT_bact phenylalan 100.0 1.7E-41 3.6E-46 322.1 16.3 169 2-172 434-608 (798)
6 COG0072 PheT Phenylalanyl-tRNA 100.0 1.7E-41 3.7E-46 315.8 14.0 169 2-173 293-468 (650)
7 CHL00192 syfB phenylalanyl-tRN 100.0 3.3E-41 7.1E-46 316.4 15.7 164 2-174 339-511 (704)
8 KOG2472|consensus 100.0 2.5E-33 5.5E-38 249.0 10.0 159 1-166 336-501 (578)
9 cd00769 PheRS_beta_core Phenyl 99.9 3E-27 6.5E-32 191.0 11.4 110 61-173 3-117 (198)
10 cd00496 PheRS_alpha_core Pheny 99.8 9.1E-21 2E-25 155.6 6.8 100 59-164 2-113 (218)
11 TIGR02367 PylS pyrrolysyl-tRNA 99.7 3.2E-18 7E-23 152.5 8.9 136 25-166 200-353 (453)
12 TIGR00468 pheS phenylalanyl-tR 99.7 9.2E-17 2E-21 137.6 10.6 117 41-164 54-183 (294)
13 PF03484 B5: tRNA synthetase B 99.6 5.7E-16 1.2E-20 106.2 3.7 40 2-41 30-70 (70)
14 cd00768 class_II_aaRS-like_cor 99.6 3.5E-15 7.5E-20 118.7 5.7 101 61-166 3-112 (211)
15 smart00874 B5 tRNA synthetase 99.5 1.3E-14 2.8E-19 99.1 4.3 40 2-41 30-71 (71)
16 PF01409 tRNA-synt_2d: tRNA sy 99.5 2.8E-14 6E-19 119.7 5.3 116 47-164 5-135 (247)
17 PRK09537 pylS pyrolysyl-tRNA s 99.3 6.4E-12 1.4E-16 112.1 8.2 108 53-165 199-316 (417)
18 PRK00488 pheS phenylalanyl-tRN 99.3 1.7E-11 3.7E-16 106.8 9.8 116 42-165 91-219 (339)
19 PRK06253 O-phosphoseryl-tRNA s 99.1 1.3E-10 2.8E-15 105.8 5.5 110 53-163 42-235 (529)
20 PRK04172 pheS phenylalanyl-tRN 98.3 2.5E-06 5.3E-11 78.0 8.2 111 53-165 228-384 (489)
21 TIGR00470 sepS O-phosphoseryl- 97.9 1.3E-05 2.7E-10 72.9 5.4 112 53-165 42-242 (533)
22 COG0016 PheS Phenylalanyl-tRNA 97.5 0.0005 1.1E-08 60.2 8.6 118 31-152 83-206 (335)
23 PTZ00326 phenylalanyl-tRNA syn 97.4 0.00067 1.4E-08 62.3 8.5 100 53-152 224-371 (494)
24 PLN02853 Probable phenylalanyl 97.4 0.00085 1.8E-08 61.5 8.6 100 53-152 216-356 (492)
25 cd00773 HisRS-like_core Class 97.2 0.00098 2.1E-08 55.8 6.3 91 60-152 5-96 (261)
26 PRK00037 hisS histidyl-tRNA sy 97.1 0.00097 2.1E-08 59.2 5.6 91 58-151 19-111 (412)
27 PF00587 tRNA-synt_2b: tRNA sy 96.9 0.00086 1.9E-08 52.6 3.2 90 61-152 3-97 (173)
28 TIGR00442 hisS histidyl-tRNA s 96.7 0.0042 9.2E-08 54.9 6.8 92 59-151 16-110 (397)
29 PF13393 tRNA-synt_His: Histid 96.7 0.0025 5.5E-08 54.3 4.8 90 60-152 13-102 (311)
30 PLN02530 histidine-tRNA ligase 96.5 0.0055 1.2E-07 56.1 6.0 90 60-151 87-177 (487)
31 PRK12421 ATP phosphoribosyltra 96.4 0.0068 1.5E-07 54.1 6.0 92 59-151 23-114 (392)
32 CHL00201 syh histidine-tRNA sy 96.4 0.0076 1.7E-07 54.3 6.2 92 59-151 20-115 (430)
33 TIGR00443 hisZ_biosyn_reg ATP 96.3 0.009 1.9E-07 51.5 5.8 91 59-152 10-101 (314)
34 PRK12420 histidyl-tRNA synthet 96.3 0.013 2.7E-07 52.6 6.9 92 59-151 20-112 (423)
35 PRK12292 hisZ ATP phosphoribos 96.1 0.011 2.4E-07 52.5 5.7 91 60-151 20-111 (391)
36 cd00670 Gly_His_Pro_Ser_Thr_tR 96.0 0.01 2.3E-07 48.1 4.4 92 61-153 6-103 (235)
37 PRK12293 hisZ ATP phosphoribos 95.8 0.018 3.9E-07 49.2 5.5 86 60-151 22-108 (281)
38 cd00771 ThrRS_core Threonyl-tR 95.6 0.024 5.3E-07 48.6 5.6 92 59-153 32-126 (298)
39 PRK12295 hisZ ATP phosphoribos 95.3 0.054 1.2E-06 48.1 6.9 90 59-151 6-95 (373)
40 PRK14799 thrS threonyl-tRNA sy 95.0 0.041 8.9E-07 51.3 5.3 92 59-153 170-264 (545)
41 TIGR00418 thrS threonyl-tRNA s 94.9 0.034 7.4E-07 51.5 4.6 92 59-152 202-296 (563)
42 PRK00413 thrS threonyl-tRNA sy 94.7 0.052 1.1E-06 51.0 5.3 92 59-152 272-366 (638)
43 PRK12305 thrS threonyl-tRNA sy 94.7 0.042 9.2E-07 51.1 4.5 92 59-152 208-302 (575)
44 PRK09194 prolyl-tRNA synthetas 94.6 0.084 1.8E-06 49.3 6.2 92 59-152 49-143 (565)
45 cd00772 ProRS_core Prolyl-tRNA 94.6 0.092 2E-06 44.3 5.9 94 59-153 34-134 (264)
46 PRK12325 prolyl-tRNA synthetas 94.5 0.097 2.1E-06 47.4 6.2 92 59-153 49-144 (439)
47 cd00779 ProRS_core_prok Prolyl 94.4 0.058 1.3E-06 45.2 4.4 92 59-152 33-127 (255)
48 PRK12444 threonyl-tRNA synthet 94.3 0.056 1.2E-06 51.0 4.6 91 59-152 276-369 (639)
49 cd00770 SerRS_core Seryl-tRNA 94.3 0.042 9.1E-07 47.2 3.4 87 60-151 55-144 (297)
50 TIGR00409 proS_fam_II prolyl-t 94.3 0.13 2.8E-06 48.2 6.8 90 59-152 49-143 (568)
51 PLN02788 phenylalanine-tRNA sy 94.1 0.29 6.4E-06 44.1 8.4 102 41-152 47-161 (402)
52 PLN02908 threonyl-tRNA synthet 93.8 0.086 1.9E-06 50.4 4.8 93 59-154 323-418 (686)
53 cd00778 ProRS_core_arch_euk Pr 92.9 0.14 3.1E-06 43.0 4.2 122 32-154 6-135 (261)
54 PRK12294 hisZ ATP phosphoribos 92.8 0.29 6.3E-06 41.7 5.9 101 59-163 9-109 (272)
55 PLN02972 Histidyl-tRNA synthet 92.3 0.32 6.9E-06 47.2 6.1 87 60-151 344-430 (763)
56 cd00774 GlyRS-like_core Glycyl 90.5 0.32 6.9E-06 40.7 3.7 83 59-152 34-121 (254)
57 COG0124 HisS Histidyl-tRNA syn 90.3 0.68 1.5E-05 42.1 5.8 92 59-151 20-114 (429)
58 TIGR00408 proS_fam_I prolyl-tR 89.2 0.6 1.3E-05 42.7 4.7 95 59-154 40-141 (472)
59 PRK08661 prolyl-tRNA synthetas 89.1 0.61 1.3E-05 42.7 4.6 95 59-153 46-146 (477)
60 TIGR00414 serS seryl-tRNA synt 86.6 1.2 2.5E-05 40.3 4.8 88 60-152 176-266 (418)
61 PLN02837 threonine-tRNA ligase 86.4 0.84 1.8E-05 43.2 3.9 92 60-153 250-344 (614)
62 cd00669 Asp_Lys_Asn_RS_core As 86.3 1.8 3.8E-05 36.8 5.5 79 61-152 5-83 (269)
63 PRK03991 threonyl-tRNA synthet 84.3 1.5 3.2E-05 41.6 4.6 91 60-153 230-324 (613)
64 TIGR00469 pheS_mito phenylalan 83.5 3.2 6.9E-05 38.2 6.1 94 54-152 38-147 (460)
65 PRK05431 seryl-tRNA synthetase 82.5 2.2 4.8E-05 38.6 4.7 88 60-152 173-264 (425)
66 PF00152 tRNA-synt_2: tRNA syn 81.7 2.1 4.6E-05 37.0 4.2 79 62-153 27-108 (335)
67 PRK09350 poxB regulator PoxA; 80.0 4.2 9.2E-05 35.1 5.4 26 61-86 9-34 (306)
68 KOG0556|consensus 78.3 6 0.00013 36.1 5.9 77 63-154 234-310 (533)
69 TIGR00462 genX lysyl-tRNA synt 77.8 7 0.00015 33.7 6.1 81 61-153 5-88 (304)
70 PRK06462 asparagine synthetase 77.5 4.1 8.8E-05 35.6 4.6 82 62-153 35-117 (335)
71 PLN02850 aspartate-tRNA ligase 73.9 7.9 0.00017 36.2 5.8 77 62-153 230-306 (530)
72 cd00775 LysRS_core Lys_tRNA sy 71.8 7.4 0.00016 33.9 4.8 79 61-153 12-91 (329)
73 PLN02678 seryl-tRNA synthetase 70.2 5.8 0.00013 36.3 3.9 87 59-152 176-269 (448)
74 cd00776 AsxRS_core Asx tRNA sy 69.7 12 0.00027 32.4 5.8 76 61-152 28-103 (322)
75 PRK04173 glycyl-tRNA synthetas 67.7 12 0.00027 34.1 5.5 125 29-154 4-202 (456)
76 PRK03932 asnC asparaginyl-tRNA 67.7 18 0.00039 33.0 6.6 78 62-153 138-222 (450)
77 COG0441 ThrS Threonyl-tRNA syn 65.4 8.7 0.00019 36.4 4.1 92 58-153 221-316 (589)
78 cd00777 AspRS_core Asp tRNA sy 64.9 19 0.00041 30.7 5.8 78 61-152 5-83 (280)
79 PTZ00401 aspartyl-tRNA synthet 64.8 15 0.00033 34.5 5.6 77 62-153 218-294 (550)
80 TIGR00499 lysS_bact lysyl-tRNA 64.1 10 0.00022 35.1 4.3 78 62-153 177-255 (496)
81 PRK00960 seryl-tRNA synthetase 63.8 11 0.00023 35.2 4.4 90 62-152 228-350 (517)
82 COG3705 HisZ ATP phosphoribosy 61.9 15 0.00033 33.1 4.8 90 59-151 19-108 (390)
83 PTZ00417 lysine-tRNA ligase; P 61.5 14 0.0003 35.1 4.7 76 63-152 259-335 (585)
84 PTZ00385 lysyl-tRNA synthetase 60.5 19 0.00042 34.6 5.5 78 62-153 238-316 (659)
85 PRK05159 aspC aspartyl-tRNA sy 59.9 24 0.00052 32.0 5.8 77 62-153 141-217 (437)
86 PRK00484 lysS lysyl-tRNA synth 59.5 17 0.00036 33.7 4.8 77 62-153 177-255 (491)
87 TIGR00458 aspS_arch aspartyl-t 58.5 17 0.00036 33.0 4.6 77 62-153 138-214 (428)
88 PLN02320 seryl-tRNA synthetase 58.5 9.1 0.0002 35.6 2.9 86 61-152 237-327 (502)
89 PRK12820 bifunctional aspartyl 56.7 29 0.00063 33.7 6.0 78 62-152 161-238 (706)
90 PRK12445 lysyl-tRNA synthetase 55.5 20 0.00044 33.2 4.7 77 63-153 190-267 (505)
91 PLN02502 lysyl-tRNA synthetase 54.9 24 0.00052 33.2 5.1 77 63-153 235-312 (553)
92 KOG0025|consensus 50.7 11 0.00024 33.1 2.0 42 31-83 176-217 (354)
93 KOG1936|consensus 50.3 40 0.00086 31.1 5.5 121 24-153 26-165 (518)
94 COG2024 Phenylalanyl-tRNA synt 46.4 20 0.00043 32.6 3.0 99 53-152 42-221 (536)
95 PF14383 VARLMGL: DUF761-assoc 45.9 12 0.00026 22.0 1.0 13 35-47 18-30 (34)
96 PRK02983 lysS lysyl-tRNA synth 45.0 78 0.0017 32.4 7.2 76 63-153 776-853 (1094)
97 PRK00476 aspS aspartyl-tRNA sy 43.5 55 0.0012 31.0 5.6 77 62-152 146-223 (588)
98 PF08002 DUF1697: Protein of u 41.4 22 0.00048 27.0 2.2 20 64-83 21-40 (137)
99 TIGR00459 aspS_bact aspartyl-t 38.5 87 0.0019 29.8 6.1 78 62-152 143-220 (583)
100 PRK09616 pheT phenylalanyl-tRN 35.8 30 0.00066 32.3 2.6 40 3-42 31-71 (552)
101 COG4427 Uncharacterized protei 31.4 39 0.00084 29.4 2.3 27 120-149 126-152 (350)
102 PLN02903 aminoacyl-tRNA ligase 27.8 1.3E+02 0.0028 29.0 5.4 78 62-152 208-286 (652)
103 COG2088 SpoVG Uncharacterized 26.2 72 0.0016 22.9 2.6 20 4-23 33-52 (95)
104 PF10613 Lig_chan-Glu_bd: Liga 25.8 34 0.00073 22.9 0.8 16 29-44 23-38 (65)
105 TIGR00471 pheT_arch phenylalan 25.5 55 0.0012 30.6 2.5 40 3-42 30-72 (551)
106 PF11537 DUF3227: Protein of u 25.0 40 0.00087 24.7 1.2 22 21-42 79-100 (102)
107 PRK14763 coenzyme PQQ biosynth 24.7 37 0.0008 18.7 0.7 8 1-8 10-17 (26)
108 TIGR00415 serS_MJ seryl-tRNA s 24.5 1.3E+02 0.0029 28.2 4.7 79 73-152 240-350 (520)
109 cd06396 PB1_NBR1 The PB1 domai 23.7 1.9E+02 0.0041 20.2 4.3 39 7-47 5-43 (81)
110 cd01178 IPT_NFAT IPT domain of 22.3 54 0.0012 24.0 1.4 24 12-35 60-84 (101)
111 PF07499 RuvA_C: RuvA, C-termi 22.2 82 0.0018 19.3 2.0 16 64-79 3-18 (47)
112 COG0442 ProS Prolyl-tRNA synth 22.1 2.3E+02 0.0049 26.5 5.7 91 59-152 49-143 (500)
113 COG3200 AroG 3-deoxy-D-arabino 20.7 46 0.001 29.9 0.9 20 15-34 126-145 (445)
114 PF02027 RolB_RolC: RolB/RolC 20.4 47 0.001 26.5 0.9 17 11-27 95-111 (185)
No 1
>PLN02265 probable phenylalanyl-tRNA synthetase beta chain
Probab=100.00 E-value=4.8e-43 Score=323.72 Aligned_cols=156 Identities=50% Similarity=0.845 Sum_probs=136.8
Q ss_pred cCCeEEEEcCCCCCCCCCchhhhhhhHhhhccCCCCCCCCCcccccCCChhhHHHHHHHHHHHHCCCceeecccccChhH
Q psy18006 10 SGAEVSVSIPPTRHDIIHTCDIYEDIAIAYGYNNIPKTMPRFASIARQVPLNKLSDQLRGDIAQAGFTEVLTFALCSRDD 89 (180)
Q Consensus 10 ~~~~~~v~vP~~R~DI~~~~DliEEIaR~~Gyd~i~~~~p~~~~~~~~~~~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~ 89 (180)
+++.+.|+||+||.||++++||||||||+|||||||+++|...+.+..++.+++.+.+|+.|+++||+|++||+|+|+++
T Consensus 349 ~~~~~~V~vP~~R~DI~~~~DiiEEVar~yGydni~~~~P~~~~~g~~~~~~~~~~~iR~~l~~~Gf~Ev~t~sl~s~~~ 428 (597)
T PLN02265 349 DGCTIRVSVPPTRSDILHPCDVAEDVAIAYGYNNIPKRKPKSMTVGKQQPLNQFSDLLRAEVAMAGFTEVLTWILCSHKE 428 (597)
T ss_pred CCCceEEEcCCccccccchhhhhhhhHheeccccCCccCCCcccCCCCCHHHHHHHHHHHHHHHCCceeeeceeeCChHH
Confidence 34569999999999999999999999999999999999887555567788899999999999999999999999999987
Q ss_pred HHHHhccccCCCCcEEeeCCcccchHHHHHhhHHHHHHHHHHhhCCCCCcceEeecceEecCC-------CcceeeeecC
Q psy18006 90 VSVKLRQKMEFIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKKMPLPLKLFEISDIVYKDA-------TAGTLMFTPG 162 (180)
Q Consensus 90 ~~~~~~~~~~~~~~v~l~NPis~e~~~lR~sLlpsLL~~l~~N~~~~~~~~iFEiG~V~~~~~-------~~~~l~~~~~ 162 (180)
.+++|+...+....|+|+||+|+|+++||+||+||||+++++|++++.++++||||+||.++. +..+||++++
T Consensus 429 ~~~~~~~~~~~~~~v~I~NP~s~e~~vlRtSLlPgLL~~l~~N~~~~~p~klFEiG~V~~~~~~~~~~~~e~~~la~~~~ 508 (597)
T PLN02265 429 NFAMLNREDDGNSAVIIGNPRSADFEVVRTSLLPGLLKTLGHNKDAPKPIKLFEVSDVVLLDESKDVGARNSRRLAALYC 508 (597)
T ss_pred HHHhhcCCccCCceEEECCCcchhHHHHHHhhHHHHHHHHHHhhcCCCCeeEEEeEeEEecCCcccCCcchhhEEEEEEE
Confidence 556676542222579999999999999999999999999999999766999999999996642 4569999999
Q ss_pred CCC
Q psy18006 163 GNR 165 (180)
Q Consensus 163 G~~ 165 (180)
|+.
T Consensus 509 g~~ 511 (597)
T PLN02265 509 GTT 511 (597)
T ss_pred CCC
Confidence 965
No 2
>TIGR00471 pheT_arch phenylalanyl-tRNA synthetase, beta subunit. Every known example of the phenylalanyl-tRNA synthetase, except the monomeric form of mitochondrial, is an alpha 2 beta 2 heterotetramer. The beta subunits break into two subfamilies that are considerably different in sequence, length, and pattern of gaps. This model represents the subfamily that includes the beta subunit from eukaryotic cytosol, the Archaea, and spirochetes.
Probab=100.00 E-value=1.8e-42 Score=317.39 Aligned_cols=161 Identities=42% Similarity=0.652 Sum_probs=138.5
Q ss_pred ccceEEeecCCeEEEEcCCCCCCCCCchhhhhhhHhhhccCCCCCCCCCcccccCCChhhHHHHHHHHHHHHCCCceeec
Q psy18006 2 CLQTKILGSGAEVSVSIPPTRHDIIHTCDIYEDIAIAYGYNNIPKTMPRFASIARQVPLNKLSDQLRGDIAQAGFTEVLT 81 (180)
Q Consensus 2 ~~~~~v~~~~~~~~v~vP~~R~DI~~~~DliEEIaR~~Gyd~i~~~~p~~~~~~~~~~~~~~~~~ir~~L~~~Gf~Ev~t 81 (180)
++||++..+++.+.|+||+||.||++++||||||||+|||||||+++|.....+..++.+++.+++|+.|+++||+|++|
T Consensus 306 ~Lg~~v~~~~~~~~v~vP~~R~DI~~~~DliEEIaR~yGyd~I~~~~p~~~~~~~~~~~~~~~~~ir~~L~~~Gf~E~it 385 (551)
T TIGR00471 306 KMRLDAVQSDEKLKVVIPAYRVDILHEVDIIEDVAIGYGYNNFPPELPLINTIGRLKPLNKVSDIIREIMVGLGFQEVIP 385 (551)
T ss_pred HhCCCeEecCCcEEEEcCCCccccCchhHHHHHHHHHhCcccCCccCCCccccCCcChHHHHHHHHHHHHHhCCceeecc
Confidence 46677654556799999999999999999999999999999999988765344566788899999999999999999999
Q ss_pred ccccChhHHHHHhccccCCCCcEEeeCCcccchHHHHHhhHHHHHHHHHHhhCCCCCcceEeecceEecCC-----Cc--
Q psy18006 82 FALCSRDDVSVKLRQKMEFIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKKMPLPLKLFEISDIVYKDA-----TA-- 154 (180)
Q Consensus 82 ysl~s~~~~~~~~~~~~~~~~~v~l~NPis~e~~~lR~sLlpsLL~~l~~N~~~~~~~~iFEiG~V~~~~~-----~~-- 154 (180)
|+|+|++++++.+++.. .+.|+|.||+|+|+++||+||+||||+++++|++++.++++||||+||.+++ +.
T Consensus 386 ysf~s~~~~~~~~~~~~--~~~v~l~NPis~e~s~lR~SLlp~LL~~~~~N~~~~~~~~lFEiG~Vf~~~~~~~~~e~~~ 463 (551)
T TIGR00471 386 LTLTSEEVNFKRMRIED--NNDVKVANPKTLEYTIVRTSLLPGLLETLSENKHHELPQKIFEIGDVVVKDDKSETRSRVV 463 (551)
T ss_pred ceEccHHHHHHHhccCC--CCcEEeCCCCchhhhHhHhhhHHHHHHHHHhcccCCCCeeEEEEEEEEEcCCcccccccee
Confidence 99999987545665532 2469999999999999999999999999999996677899999999997642 23
Q ss_pred ceeeeecCCC
Q psy18006 155 GTLMFTPGGN 164 (180)
Q Consensus 155 ~~l~~~~~G~ 164 (180)
.+|+++++|+
T Consensus 464 ~~l~~~~~g~ 473 (551)
T TIGR00471 464 TKLAVGITHS 473 (551)
T ss_pred eEEEEEEECC
Confidence 6899999996
No 3
>PRK00629 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed
Probab=100.00 E-value=5.1e-42 Score=325.34 Aligned_cols=168 Identities=29% Similarity=0.424 Sum_probs=146.2
Q ss_pred ccceEEeecC-CeEEEEcCCCCCCCCCchhhhhhhHhhhccCCCCCCCCC-cccccCCChhhHHHHHHHHHHHHCCCcee
Q psy18006 2 CLQTKILGSG-AEVSVSIPPTRHDIIHTCDIYEDIAIAYGYNNIPKTMPR-FASIARQVPLNKLSDQLRGDIAQAGFTEV 79 (180)
Q Consensus 2 ~~~~~v~~~~-~~~~v~vP~~R~DI~~~~DliEEIaR~~Gyd~i~~~~p~-~~~~~~~~~~~~~~~~ir~~L~~~Gf~Ev 79 (180)
+|||++..++ +.+.|+||+||.||++++||||||||+|||||||+++|. ....+..++.+.+.+++|+.|+++||+|+
T Consensus 429 ~Lgf~~~~~~~~~~~V~vPs~R~DI~~~~DliEEI~RiyGyd~i~~~~p~~~~~~~~~~~~~~~~~~ir~~L~~~Gf~Ev 508 (791)
T PRK00629 429 RLGFEVTEVDGDGLTVTVPSWRFDIEIEEDLVEEVARIYGYDNIPSTPPVAALTMGGLTEAQRLLRRLRRALAALGYQEV 508 (791)
T ss_pred HCCCEEEecCCCeEEEECCCCccccCcccHHHHHHHHHhCcccCcCcCCCcccCCCCCCHHHHHHHHHHHHHHHCCCcEE
Confidence 5788876555 679999999999999999999999999999999999886 33445667888899999999999999999
Q ss_pred ecccccChhHHHHHhccccCCCCcEEeeCCcccchHHHHHhhHHHHHHHHHHhhCC-CCCcceEeecceEecC----CCc
Q psy18006 80 LTFALCSRDDVSVKLRQKMEFIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKKM-PLPLKLFEISDIVYKD----ATA 154 (180)
Q Consensus 80 ~tysl~s~~~~~~~~~~~~~~~~~v~l~NPis~e~~~lR~sLlpsLL~~l~~N~~~-~~~~~iFEiG~V~~~~----~~~ 154 (180)
+||+|+|++++ ..|+.. ...++|.||+|+|+++||+||+||||+++++|+++ ..++++||+|+||.++ .+.
T Consensus 509 ~tysf~~~~~~-~~~~~~---~~~i~l~NPis~e~~~lR~SLlp~LL~~~~~N~~~~~~~i~lFEiG~Vf~~~~~~~~e~ 584 (791)
T PRK00629 509 ITYSFVSPEDA-KLFGLN---PEPLLLLNPISEELSVMRTSLLPGLLEAVAYNLNRGNKDVALFEIGRVFLPDGDLPREP 584 (791)
T ss_pred eccccCCHHHH-HhcCCC---CCeEEEeCCCchHHHHHHHhhHHHHHHHHHHHHhCCCCCEeEEeeeeeeCCCCCCCcch
Confidence 99999999875 456543 24799999999999999999999999999999986 4789999999999763 466
Q ss_pred ceeeeecCCCCCccchhhh
Q psy18006 155 GTLMFTPGGNRTRDLAISR 173 (180)
Q Consensus 155 ~~l~~~~~G~~~~~~w~~~ 173 (180)
.+||++++|.....+|+..
T Consensus 585 ~~la~~~~g~~~~~~w~~~ 603 (791)
T PRK00629 585 EHLAGVLTGNRVEESWGGK 603 (791)
T ss_pred hEEEEEEECCCcccccccc
Confidence 7999999998888889754
No 4
>PRK09616 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed
Probab=100.00 E-value=2.4e-42 Score=316.65 Aligned_cols=162 Identities=35% Similarity=0.569 Sum_probs=139.9
Q ss_pred ccceEEeecCCeEEEEcCCCCCCCCCchhhhhhhHhhhccCCCCCCCCCcccccCCChhhHHHHHHHHHHHHCCCceeec
Q psy18006 2 CLQTKILGSGAEVSVSIPPTRHDIIHTCDIYEDIAIAYGYNNIPKTMPRFASIARQVPLNKLSDQLRGDIAQAGFTEVLT 81 (180)
Q Consensus 2 ~~~~~v~~~~~~~~v~vP~~R~DI~~~~DliEEIaR~~Gyd~i~~~~p~~~~~~~~~~~~~~~~~ir~~L~~~Gf~Ev~t 81 (180)
++||++...++.+.|+||+||+||++++||||||||+|||||||+++|.....+..++.+++.+++|+.|+++||+|++|
T Consensus 303 ~Lgf~~~~~~~~~~v~vP~~R~DI~~~~DliEEiaR~yGyd~i~~~~p~~~~~~~~~~~~~~~~~ir~~L~~~Gf~Ev~t 382 (552)
T PRK09616 303 RMRYDAEIGDDKVKVTVPPYRVDILHEVDVIEDVAIAYGYNNLEPELPKVFTIGRLHPIEKLERAIRDLMVGLGFQEVMN 382 (552)
T ss_pred HcCCCcEecCCeEEEEeCCCcccccccchHHHHHHHHhCcccCCccCCCCccCCCCChHHHHHHHHHHHHHhCCcceecc
Confidence 46777765667899999999999999999999999999999999998874345667788899999999999999999999
Q ss_pred ccccChhHHHHHhccccCCCCcEEeeCCcccchHHHHHhhHHHHHHHHHHhhCCCCCcceEeecceEecCC-------Cc
Q psy18006 82 FALCSRDDVSVKLRQKMEFIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKKMPLPLKLFEISDIVYKDA-------TA 154 (180)
Q Consensus 82 ysl~s~~~~~~~~~~~~~~~~~v~l~NPis~e~~~lR~sLlpsLL~~l~~N~~~~~~~~iFEiG~V~~~~~-------~~ 154 (180)
|+|+|+++.++.|++..+ .+.|+|.||+|+|+++||+||+||||+++++|+++..++++||+|+||.+++ +.
T Consensus 383 ys~~s~~~~~~~~~~~~~-~~~i~l~NPls~e~svLRtsLlpgLL~~~~~N~~~~~~~~lFEiG~Vf~~~~~~~~~~~e~ 461 (552)
T PRK09616 383 FTLTSEEVLFEKMNLEPE-EDYVEVLNPISEDYTVVRTSLLPSLLEFLSNNKHREYPQKIFEIGDVVLIDESTETGTRTE 461 (552)
T ss_pred ceEechHHHHHHhCCCCC-CCeEEEcCCCccchheEeccchHHHHHHHHhccCCCCCeeEEEeeEEEecCCccccCcchh
Confidence 999999763456665321 1469999999999999999999999999999996667899999999997642 35
Q ss_pred ceeeeecCCC
Q psy18006 155 GTLMFTPGGN 164 (180)
Q Consensus 155 ~~l~~~~~G~ 164 (180)
.+||++++|+
T Consensus 462 ~~l~~~~~g~ 471 (552)
T PRK09616 462 RKLAAAIAHS 471 (552)
T ss_pred hEEEEEEECC
Confidence 6999999996
No 5
>TIGR00472 pheT_bact phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial. Every known example of the phenylalanyl-tRNA synthetase, except the monomeric form of mitochondrial, is an alpha 2 beta 2 heterotetramer. The beta subunits break into two subfamilies that are considerably different in sequence, length, and pattern of gaps. This model represents the subfamily that includes the beta subunit from Bacteria other than spirochetes, as well as a chloroplast-encoded form from Porphyra purpurea. The chloroplast-derived sequence is considerably shorter at the amino end, however.
Probab=100.00 E-value=1.7e-41 Score=322.10 Aligned_cols=169 Identities=30% Similarity=0.370 Sum_probs=143.0
Q ss_pred ccceEEeecCCeEEEEcCCCCCCCCCchhhhhhhHhhhccCCCCCCCCCcccccCCC-hhhHHHHHHHHHHHHCCCceee
Q psy18006 2 CLQTKILGSGAEVSVSIPPTRHDIIHTCDIYEDIAIAYGYNNIPKTMPRFASIARQV-PLNKLSDQLRGDIAQAGFTEVL 80 (180)
Q Consensus 2 ~~~~~v~~~~~~~~v~vP~~R~DI~~~~DliEEIaR~~Gyd~i~~~~p~~~~~~~~~-~~~~~~~~ir~~L~~~Gf~Ev~ 80 (180)
++||++..+++.+.|+||+||.||++++||||||||+|||||||+++|.....+... ..+...+++|+.|+++||+|++
T Consensus 434 ~Lgf~~~~~~~~~~V~vP~~R~DI~~~~DliEEI~R~yGydni~~~~p~~~~~~~~~~~~~~~~~~~r~~L~~~Gf~Ev~ 513 (798)
T TIGR00472 434 RLGFKVEKQKDGWEVTVPSYRHDITIEEDLIEEIARIYGYDNIPAEPLSVSSKLNKNNENYLLLRKLRTLLVGLGLNEVI 513 (798)
T ss_pred HCCCEEEecCCeEEEECCCCccccccchhhHhhhhhhhCcccCCCCCCCcccCCCCCCHHHHHHHHHHHHHHHCCCcEEe
Confidence 578888756667999999999999999999999999999999999988754443343 4444558899999999999999
Q ss_pred cccccChhHHHHHhccccCCCCcEEeeCCcccchHHHHHhhHHHHHHHHHHhhCC-CCCcceEeecceEecCC----Ccc
Q psy18006 81 TFALCSRDDVSVKLRQKMEFIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKKM-PLPLKLFEISDIVYKDA----TAG 155 (180)
Q Consensus 81 tysl~s~~~~~~~~~~~~~~~~~v~l~NPis~e~~~lR~sLlpsLL~~l~~N~~~-~~~~~iFEiG~V~~~~~----~~~ 155 (180)
||+|+|++++ ..++++.. ...|+|.||+|+|+++||+||+||||+++++|+++ ..++++||+|+||.+++ +..
T Consensus 514 tysl~s~~~~-~~~~~~~~-~~~i~l~NPis~e~s~lR~SLlpgLL~~~~~N~~~~~~~~~lFEiG~V~~~~~~~~~e~~ 591 (798)
T TIGR00472 514 TYSLVSSEKA-EKFNFPKL-ENLVEIKNPLSNERSVLRTSLLPSLLEVLAYNQNRKNKDVKIFEIGKVFAKDGLGVKEQL 591 (798)
T ss_pred ccccCCHHHH-HhhcCCCC-CceEEEeCCCchHHHHHHHhhHHHHHHHHHHHHhCCCCCEeEEeeecccCCCCCCcchhh
Confidence 9999999764 45654321 12799999999999999999999999999999986 57899999999997643 567
Q ss_pred eeeeecCCCCCccchhh
Q psy18006 156 TLMFTPGGNRTRDLAIS 172 (180)
Q Consensus 156 ~l~~~~~G~~~~~~w~~ 172 (180)
+||++++|.....+|..
T Consensus 592 ~La~~~~g~~~~~~~~~ 608 (798)
T TIGR00472 592 RLAILISGEKNPSSWNH 608 (798)
T ss_pred EEEEEEECCCCcccccC
Confidence 99999999988788875
No 6
>COG0072 PheT Phenylalanyl-tRNA synthetase beta subunit [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.7e-41 Score=315.79 Aligned_cols=169 Identities=33% Similarity=0.546 Sum_probs=148.3
Q ss_pred ccceEEeecCCeEEEEcCCCCCCCCCchhhhhhhHhhhccCCCCCCCCCcccccC--CChhhHHHHHHHHHHHHCCCcee
Q psy18006 2 CLQTKILGSGAEVSVSIPPTRHDIIHTCDIYEDIAIAYGYNNIPKTMPRFASIAR--QVPLNKLSDQLRGDIAQAGFTEV 79 (180)
Q Consensus 2 ~~~~~v~~~~~~~~v~vP~~R~DI~~~~DliEEIaR~~Gyd~i~~~~p~~~~~~~--~~~~~~~~~~ir~~L~~~Gf~Ev 79 (180)
++||.+...++.+.|++|+||+||.+++||||||||+||||||++++|.....+. .++.+.+.+.+|+.|+++||+|+
T Consensus 293 rLg~~~~~~~~~~~V~vPs~R~DI~~e~DliEEv~r~yGy~ni~~~~p~~~~~~~~~~~~~~~~~r~vr~~l~~~G~~Ev 372 (650)
T COG0072 293 RLGFKVEVKGDGLTVTVPSYRVDILIEADLIEEVARIYGYNNIPPELPSAFTIGRGGLTPLQKFRRKVRRALVGLGFQEV 372 (650)
T ss_pred HcCCeeEecCCcEEEeCCCCcccccchhHHHHHHHHHhCcccCCCcCCcccccccCCCChHHHHHHHHHHHHHhCCcceE
Confidence 5677777667779999999999999999999999999999999999998765444 77888899999999999999999
Q ss_pred ecccccChhHHHHHhccccCCCCcEEeeCCcccchHHHHHhhHHHHHHHHHHhhCCCCC-cceEeecceEecCC----Cc
Q psy18006 80 LTFALCSRDDVSVKLRQKMEFIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKKMPLP-LKLFEISDIVYKDA----TA 154 (180)
Q Consensus 80 ~tysl~s~~~~~~~~~~~~~~~~~v~l~NPis~e~~~lR~sLlpsLL~~l~~N~~~~~~-~~iFEiG~V~~~~~----~~ 154 (180)
+||+|+|++.+. .++... .+.++|.||+|+|+++||+||+||||+++++|++++.+ ++|||+|+||..++ +.
T Consensus 373 itysl~s~e~~~-~~~~~~--~~~~~l~NPiS~e~s~mR~sLlp~LL~~~~~N~~r~~~~~~iFEiG~v~~~~~~~~~~~ 449 (650)
T COG0072 373 ITYSLTSPEEAK-LFGLEN--DEALELANPISEEYSVLRTSLLPGLLEALSYNKNRKNPDVRIFEIGDVFVKDEEAERET 449 (650)
T ss_pred eeeccCCHHHHH-HhccCC--CcceEecCCcchhHHHHHHHHHHHHHHHHHHhhccCCCCeeEEEeeeeEecCCcccchh
Confidence 999999999854 444322 12899999999999999999999999999999998655 99999999999874 35
Q ss_pred ceeeeecCCCCCccchhhh
Q psy18006 155 GTLMFTPGGNRTRDLAISR 173 (180)
Q Consensus 155 ~~l~~~~~G~~~~~~w~~~ 173 (180)
.+++.+++|.....+|+..
T Consensus 450 ~~~~~l~~g~~~~~~w~~~ 468 (650)
T COG0072 450 RHLAGLAAGLAGEESWQGK 468 (650)
T ss_pred HHHHHHhhccccccccccC
Confidence 6889999997779999976
No 7
>CHL00192 syfB phenylalanyl-tRNA synthetase beta chain; Provisional
Probab=100.00 E-value=3.3e-41 Score=316.37 Aligned_cols=164 Identities=26% Similarity=0.383 Sum_probs=141.0
Q ss_pred ccceEEeec-CC-eEEEEcCCCCC-CCCCchhhhhhhHhhhccCCCCCCCCCcccccCCChhhHHHHHHHHHHHHCCCce
Q psy18006 2 CLQTKILGS-GA-EVSVSIPPTRH-DIIHTCDIYEDIAIAYGYNNIPKTMPRFASIARQVPLNKLSDQLRGDIAQAGFTE 78 (180)
Q Consensus 2 ~~~~~v~~~-~~-~~~v~vP~~R~-DI~~~~DliEEIaR~~Gyd~i~~~~p~~~~~~~~~~~~~~~~~ir~~L~~~Gf~E 78 (180)
++||++..+ ++ .|.|+||+||. ||++++||||||||+|||||||+++|.....+..++.+++.+++|+.|+++||+|
T Consensus 339 ~Lgf~v~~~~~~~~~~V~vP~~R~~DI~~~~DliEEIaRiyGYdnI~~~~p~~~~~~~~~~~~~~~~~ir~~L~~~Gf~E 418 (704)
T CHL00192 339 RLNFKITYDSLKLNWEVLIPSYRKDDIVREIDVIEEIARIYGFNNFLSKLPNIKFIGRLDIDYNTRDKIRSYLRNLGLTE 418 (704)
T ss_pred HCCCEEEecCCCceEEEEcCCCCchhcCchhHHHHHHHHhcCcccCcccccccccCCCCCHHHHHHHHHHHHHHhCCCce
Confidence 467887644 34 69999999998 9999999999999999999999998864334566778899999999999999999
Q ss_pred eecccccChhHHHHHhccccCCCCcEEeeCCcccchHHHHHhhHHHHHHHHHHhhCCC-CCcceEeecceEecCC----C
Q psy18006 79 VLTFALCSRDDVSVKLRQKMEFIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKKMP-LPLKLFEISDIVYKDA----T 153 (180)
Q Consensus 79 v~tysl~s~~~~~~~~~~~~~~~~~v~l~NPis~e~~~lR~sLlpsLL~~l~~N~~~~-~~~~iFEiG~V~~~~~----~ 153 (180)
++||+|+|++. + . ...|+|.||+|+|+++||+||+||||+++++|++++ .++++||+|+||.+++ +
T Consensus 419 vitysf~s~~~----~--~---~~~i~l~NPiS~e~s~lR~SLlpgLL~~~~~N~~r~~~~~rlFEiG~Vf~~~~~~~~e 489 (704)
T CHL00192 419 LIHYSLVKQES----F--S---KNEIKLKNPLIKDYSTLRSSLLPGLIEAVQENLKQGNSTLEGFEIGHVFNLDSSSIIE 489 (704)
T ss_pred EecccccChhh----c--C---CCcEEEeCCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCEeEEEeeeeEcCCCccccc
Confidence 99999999974 1 1 247999999999999999999999999999999864 7899999999997642 4
Q ss_pred cceeeeecCCCC-Cccchhhhc
Q psy18006 154 AGTLMFTPGGNR-TRDLAISRQ 174 (180)
Q Consensus 154 ~~~l~~~~~G~~-~~~~w~~~~ 174 (180)
..+|+++++|.+ .+.+|....
T Consensus 490 ~~~la~~~~g~~~~~~~w~~~~ 511 (704)
T CHL00192 490 ETELAGGIFGGIDIRSSWSEKA 511 (704)
T ss_pred cceEEEEEECCCcCccccCCCC
Confidence 579999999986 668887543
No 8
>KOG2472|consensus
Probab=100.00 E-value=2.5e-33 Score=249.04 Aligned_cols=159 Identities=59% Similarity=0.975 Sum_probs=144.8
Q ss_pred CccceEEeecCCeEEEEcCCCCCCCCCchhhhhhhHhhhccCCCCCCCCCcccccCCChhhHHHHHHHHHHHHCCCceee
Q psy18006 1 MCLQTKILGSGAEVSVSIPPTRHDIIHTCDIYEDIAIAYGYNNIPKTMPRFASIARQVPLNKLSDQLRGDIAQAGFTEVL 80 (180)
Q Consensus 1 m~~~~~v~~~~~~~~v~vP~~R~DI~~~~DliEEIaR~~Gyd~i~~~~p~~~~~~~~~~~~~~~~~ir~~L~~~Gf~Ev~ 80 (180)
|.|.+++.++++ ++|.||+-|.||.|.+||+||+|..||||||+.++|...+.+.+.+..++.+.+|..++.+||+|++
T Consensus 336 M~L~a~v~~~~~-l~v~iPptraDIlHaCDI~ED~aIAyGyNNi~~~lP~~~~~~~~~plNkl~d~lR~e~a~ag~~E~l 414 (578)
T KOG2472|consen 336 MYLKAKVIGNGN-LEVKIPPTRADILHACDIVEDAAIAYGYNNIQMTLPASNTIAKPFPLNKLTDILRIEVAAAGFTEAL 414 (578)
T ss_pred hheeeEecCCCc-eEEecCCchhhhhhhhhhhhHHHHHhccccccccCcchhcccCccchHHHHHHHHHHHHHhhhhhhe
Confidence 788888875544 9999999999999999999999999999999999999888888899999999999999999999999
Q ss_pred cccccChhHHHHHhccccCCCCcEEeeCCcccchHHHHHhhHHHHHHHHHHhhCCCCCcceEeecceEecCCC-------
Q psy18006 81 TFALCSRDDVSVKLRQKMEFIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKKMPLPLKLFEISDIVYKDAT------- 153 (180)
Q Consensus 81 tysl~s~~~~~~~~~~~~~~~~~v~l~NPis~e~~~lR~sLlpsLL~~l~~N~~~~~~~~iFEiG~V~~~~~~------- 153 (180)
||.|+|.++ + ..+...+|.|.||.+.|++++|+||+||||++++.|++...|+++|||++|+.++.+
T Consensus 415 ~~~LcS~de-----~-~~d~~~AV~l~NPkt~efqv~RtsLlPGllKTv~~N~~~~lP~klFEisDvv~~D~~~e~ga~N 488 (578)
T KOG2472|consen 415 TFTLCSRDE-----N-VIDGDKAVHLGNPKTLEFQVVRTSLLPGLLKTVASNRKMPLPIKLFEISDVVFKDSSTEVGARN 488 (578)
T ss_pred eeeeecccc-----C-CcccccceEecCCCceeeeeehhhhchHHHHHHHhccCCCCceeEEEeeeEEEecccccccccc
Confidence 999999997 2 223457899999999999999999999999999999998899999999999998864
Q ss_pred cceeeeecCCCCC
Q psy18006 154 AGTLMFTPGGNRT 166 (180)
Q Consensus 154 ~~~l~~~~~G~~~ 166 (180)
+.|||++-||+..
T Consensus 489 ~R~l~A~y~g~~~ 501 (578)
T KOG2472|consen 489 ERHLAAVYCGKTS 501 (578)
T ss_pred hheeeeeecCCCc
Confidence 5689999998753
No 9
>cd00769 PheRS_beta_core Phenylalanyl-tRNA synthetase (PheRS) beta chain core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer. While the alpha chain contains a catalytic core domain, the beta chain has a non-catalytic core domain.
Probab=99.95 E-value=3e-27 Score=190.95 Aligned_cols=110 Identities=35% Similarity=0.530 Sum_probs=95.4
Q ss_pred hHHHHHHHHHHHHCCCceeecccccChhHHHHHhccccCCCCcEEeeCCcccchHHHHHhhHHHHHHHHHHhhCCC-CCc
Q psy18006 61 NKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEFIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKKMP-LPL 139 (180)
Q Consensus 61 ~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~~~~~~~~~v~l~NPis~e~~~lR~sLlpsLL~~l~~N~~~~-~~~ 139 (180)
+.+.+++|+.|+++||+|++||+|+++++. +.++.+ ....|+|.||+|+|+++||+||+||||+++++|++++ .++
T Consensus 3 ~~~~~~ir~~L~~~G~~E~~tys~~~~~~~-~~~~~~--~~~~i~l~NPis~e~~~lR~sLlp~LL~~~~~N~~~~~~~~ 79 (198)
T cd00769 3 QKLERKLRRLLAGLGFQEVITYSLTSPEEA-ELFDGG--LDEAVELSNPLSEEYSVLRTSLLPGLLDALARNLNRKNKPL 79 (198)
T ss_pred hHHHHHHHHHHHHCCCceeecccCCCHHHH-HhccCC--CCCeEEEcCCCchhHHHHHHHHHHHHHHHHHHHhcCCCCCE
Confidence 567899999999999999999999999764 445332 2357999999999999999999999999999999864 799
Q ss_pred ceEeecceEecC----CCcceeeeecCCCCCccchhhh
Q psy18006 140 KLFEISDIVYKD----ATAGTLMFTPGGNRTRDLAISR 173 (180)
Q Consensus 140 ~iFEiG~V~~~~----~~~~~l~~~~~G~~~~~~w~~~ 173 (180)
+|||||+||.++ .+..+|+++++|.....+|+..
T Consensus 80 ~lFEiG~vf~~~~~~~~e~~~l~~~~~g~~~~~~w~~~ 117 (198)
T cd00769 80 RLFEIGRVFLKDEDGPEEEEHLAALLSGNREPESWQGK 117 (198)
T ss_pred eEEEeEeEEecCCCCCcchheEEEEEECCCccccccCC
Confidence 999999999775 3667999999999888999753
No 10
>cd00496 PheRS_alpha_core Phenylalanyl-tRNA synthetase (PheRS) alpha chain catalytic core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer.
Probab=99.83 E-value=9.1e-21 Score=155.59 Aligned_cols=100 Identities=20% Similarity=0.183 Sum_probs=82.8
Q ss_pred hhhHHHHHHHHHHHHCCCceeecccccChhHHHHHhccccCC-----CCcEEeeCCcccchHHHHHhhHHHHHHHHHHhh
Q psy18006 59 PLNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEF-----IPAVHIGNPKTLEFQIARTTLVPGLLKTLAANK 133 (180)
Q Consensus 59 ~~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~~~~~~-----~~~v~l~NPis~e~~~lR~sLlpsLL~~l~~N~ 133 (180)
+.+++.+++|+.|+++||+|++||+|++++..++.++...+. .+.++|.||+ +++||+||+||||+++++|
T Consensus 2 ~~~~~~~~ir~~L~~~Gf~Ev~tys~~~~~~~~~~~~~~~~~~~~~~~~~v~l~NP~---~~~LR~sLlp~LL~~l~~N- 77 (218)
T cd00496 2 PLNKVIEEIEDIFVSMGFTEVEGPEVETDFYNFDALNIPQDHPARDMQDTFYINDPA---RLLLRTHTSAVQARALAKL- 77 (218)
T ss_pred hHHHHHHHHHHHHHHCCCEEEeCCcccccchhhhhcCCCCCCcccccCceEEECCCc---eEEEeccCcHHHHHHHHhc-
Confidence 567889999999999999999999999995334556543210 0358999999 9999999999999999999
Q ss_pred CCCCCcceEeecceEecCC-------CcceeeeecCCC
Q psy18006 134 KMPLPLKLFEISDIVYKDA-------TAGTLMFTPGGN 164 (180)
Q Consensus 134 ~~~~~~~iFEiG~V~~~~~-------~~~~l~~~~~G~ 164 (180)
..++++||||+||.++. +..+|+++++|.
T Consensus 78 --~~~~~lFEiG~Vf~~~~~~~~~~~E~~~l~~~~~g~ 113 (218)
T cd00496 78 --KPPIRIFSIGRVYRNDEIDATHLPEFHQIEGLVVDK 113 (218)
T ss_pred --CCCeeEEEEcCeEECCCCCCCcCCccEEEEEEEECC
Confidence 55899999999997653 445888999995
No 11
>TIGR02367 PylS pyrrolysyl-tRNA synthetase. PylS is the archaeal enzyme responsible for charging the pyrrolysine tRNA, PylT, by ligating a free molecule of pyrrolysine. Pyrrolysine is encoded at an in-frame UAG (amber) at least in several corrinoid-dependent methyltransferases of the archaeal genera Methanosarcina and Methanococcoides, such as trimethylamine methyltransferase.
Probab=99.75 E-value=3.2e-18 Score=152.54 Aligned_cols=136 Identities=18% Similarity=0.249 Sum_probs=111.3
Q ss_pred CCCchhhhhhhHhhhccCCCCCCCC--------CcccccCCChhhHHHHHHHHHHHHCCCceeecccccChhHHHHHhcc
Q psy18006 25 IIHTCDIYEDIAIAYGYNNIPKTMP--------RFASIARQVPLNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQ 96 (180)
Q Consensus 25 I~~~~DliEEIaR~~Gyd~i~~~~p--------~~~~~~~~~~~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~~ 96 (180)
+....|=+ +|+|.||||+|++.+| ...+.|..++...+.+.+|++|.++||+|++|+.|++.+. ++.|+.
T Consensus 200 ~~~~~~~~-~v~~~~gf~~~ep~lP~~~~~~~~~~~TiG~~~~~~~Led~IRevfvg~GFqEV~TPtLt~eE~-~E~m~~ 277 (453)
T TIGR02367 200 LLNPEDEI-SLNMAKPFRELEPELLSRRKKDFQQIYAEDREDYLGKLERDITKFFVDRGFLEIKSPILIPAEY-IERMGI 277 (453)
T ss_pred hcCCchhh-hhHHhccccccCcccCcccccccccccccCcccHHHHHHHHHHHHHHHCCCEEEECCeecchHH-HHhhcC
Confidence 33344433 5899999999999999 6667899999999999999999999999999999997765 577765
Q ss_pred ccCCCCcEEeeCCc--ccchHHHHHhhHHHHHHHHHHhhC-CCCCcceEeecceEecCCC-------cceeeeecCCCCC
Q psy18006 97 KMEFIPAVHIGNPK--TLEFQIARTTLVPGLLKTLAANKK-MPLPLKLFEISDIVYKDAT-------AGTLMFTPGGNRT 166 (180)
Q Consensus 97 ~~~~~~~v~l~NPi--s~e~~~lR~sLlpsLL~~l~~N~~-~~~~~~iFEiG~V~~~~~~-------~~~l~~~~~G~~~ 166 (180)
.. ...+.||+ +.+..+||++++|+|++.++.|.+ ...|+|+||||+||..+.. -..+++.++|...
T Consensus 278 ~~----g~eI~n~Iyk~ee~lvLRPdLTPsLaR~La~N~~~l~~PqKIFEIGkVFR~E~~~~thlREF~QL~~eIaG~~a 353 (453)
T TIGR02367 278 DN----DTELSKQIFRVDKNFCLRPMLAPNLYNYLRKLDRALPDPIKIFEIGPCYRKESDGKEHLEEFTMLNFCQMGSGC 353 (453)
T ss_pred cc----CCcccccceEecCceEecccCHHHHHHHHHHhhhhccCCeeEEEEcCeEecCCCCCCCcCeEEEEEEEEECCCC
Confidence 31 24578888 778999999999999999998765 4679999999999976542 2478888888754
No 12
>TIGR00468 pheS phenylalanyl-tRNA synthetase, alpha subunit. Most phenylalanyl-tRNA synthetases are heterodimeric, with 2 alpha (pheS) and 2 beta (pheT) subunits. This model describes the alpha subunit, which shows some similarity to class II aminoacyl-tRNA ligases. Mitochondrial phenylalanyl-tRNA synthetase is a single polypeptide chain, active as a monomer, and similar to this chain rather than to the beta chain, but excluded from this model. An interesting feature of the alignment of all sequences captured by this model is a deep split between non-spirochete bacterial examples and all other examples; supporting this split is a relative deletion of about 50 residues in the former set between two motifs well conserved throughout the alignment.
Probab=99.70 E-value=9.2e-17 Score=137.60 Aligned_cols=117 Identities=18% Similarity=0.157 Sum_probs=89.9
Q ss_pred cCCCCCCCCCc-ccccCCChhhHHHHHHHHHHHHCCCceeecccccChhHHHHHhccccC-----CCCcEEeeCCcccch
Q psy18006 41 YNNIPKTMPRF-ASIARQVPLNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKME-----FIPAVHIGNPKTLEF 114 (180)
Q Consensus 41 yd~i~~~~p~~-~~~~~~~~~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~~~~~-----~~~~v~l~NPis~e~ 114 (180)
.+.+..++|.. ...+..++.+++.+++|++|+++||+|++||+|+++...++.++.+.+ ..+.+.|. |.
T Consensus 54 ~~~~d~tlp~~~~~~g~~~p~~~~~~~ir~~l~~~Gf~Ev~~~~~~s~~~~fd~l~~~~~hpar~~~d~~~l~-----d~ 128 (294)
T TIGR00468 54 FETYDVTLPGTKIYPGSLHPLTRVIDEIRDIFLGLGFTEEKGPEVETDFWNFDALNIPQDHPARDMQDTFYIK-----DR 128 (294)
T ss_pred hccCcccCCCCCCCCCCcCHHHHHHHHHHHHHHHCCCEEeeCCceeccHHHHHHhCCCCCCcchhhccceeec-----CC
Confidence 34444455543 345677899999999999999999999999999999544566765421 01234553 89
Q ss_pred HHHHHhhHHHHHHHHHHhhCCCCCcceEeecceEecCC-------CcceeeeecCCC
Q psy18006 115 QIARTTLVPGLLKTLAANKKMPLPLKLFEISDIVYKDA-------TAGTLMFTPGGN 164 (180)
Q Consensus 115 ~~lR~sLlpsLL~~l~~N~~~~~~~~iFEiG~V~~~~~-------~~~~l~~~~~G~ 164 (180)
++||+||+|+||+++++|++ .|+++||+|+||.++. +..+|++++.++
T Consensus 129 ~vLRtsl~p~ll~~l~~N~~--~pirlFEiGrVfr~d~~d~~~~pef~ql~gl~~~~ 183 (294)
T TIGR00468 129 LLLRTHTTAVQLRTMEENEK--PPIRIFSPGRVFRNDTVDATHLPEFHQVEGLVIDK 183 (294)
T ss_pred cceecccHHHHHHHHHhcCC--CCceEEEecceEEcCCCCCccCChhhEEEEEEECC
Confidence 99999999999999999987 6899999999998754 234778887773
No 13
>PF03484 B5: tRNA synthetase B5 domain; InterPro: IPR005147 Domain B5 is found in phenylalanine-tRNA synthetase beta subunits. This domain has been shown to bind DNA through a winged helix-turn-helix motif []. Phenylalanine-tRNA synthetase may influence common cellular processes via DNA binding, in addition to its aminoacylation function.; GO: 0000287 magnesium ion binding, 0003723 RNA binding, 0005524 ATP binding, 0006432 phenylalanyl-tRNA aminoacylation; PDB: 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B 3PCO_D 2CXI_C 1JJC_B 1EIY_B ....
Probab=99.60 E-value=5.7e-16 Score=106.24 Aligned_cols=40 Identities=40% Similarity=0.632 Sum_probs=34.8
Q ss_pred ccceEEee-cCCeEEEEcCCCCCCCCCchhhhhhhHhhhcc
Q psy18006 2 CLQTKILG-SGAEVSVSIPPTRHDIIHTCDIYEDIAIAYGY 41 (180)
Q Consensus 2 ~~~~~v~~-~~~~~~v~vP~~R~DI~~~~DliEEIaR~~Gy 41 (180)
++||++.. +++.+.|+||+||.||++++||||||||+|||
T Consensus 30 ~lg~~~~~~~~~~~~v~vP~~R~Di~~~~DliEEiaR~yGY 70 (70)
T PF03484_consen 30 RLGFKVEKIDGDTLEVTVPSYRFDIEHEEDLIEEIARIYGY 70 (70)
T ss_dssp HTT-EEEE-CTTEEEEEEETTSTT-SSHHHHHHHHHHHHTG
T ss_pred HCCCEEEECCCCEEEEEcCCCcCCcCcccHHHHHHHHHhCC
Confidence 46777776 77899999999999999999999999999998
No 14
>cd00768 class_II_aaRS-like_core Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA. PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. These enzymes are usually homodimers. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. The substrate specificity of this reaction is further determined by additional domains. Intererestingly, this domain is also found is asparagine synthase A (AsnA), in the accessory subunit of mitochondrial polymerase gamma and in the bacterial ATP phosphoribosyltransferase regulatory subunit HisZ.
Probab=99.56 E-value=3.5e-15 Score=118.75 Aligned_cols=101 Identities=25% Similarity=0.229 Sum_probs=84.2
Q ss_pred hHHHHHHHHHHHHCCCceeecccccChhHHHHHhccccCCCCcEEeeCCcccchHHHHHhhHHHHHHHHHHhhCCCCCcc
Q psy18006 61 NKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEFIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKKMPLPLK 140 (180)
Q Consensus 61 ~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~~~~~~~~~v~l~NPis~e~~~lR~sLlpsLL~~l~~N~~~~~~~~ 140 (180)
..+.+.+|+.|++.||+|++||+|++.+.. ..++.. ...+.+.||++.+..+||+|++|+|+++++.|. +..+++
T Consensus 3 ~~~~~~~r~~l~~~Gf~Ev~t~~l~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~LR~s~~~~l~~~~~~n~-~~~~~~ 77 (211)
T cd00768 3 SKIEQKLRRFMAELGFQEVETPIVEREPLL-EKAGHE---PKDLLPVGAENEEDLYLRPTLEPGLVRLFVSHI-RKLPLR 77 (211)
T ss_pred HHHHHHHHHHHHHcCCEEeEcceecHHHHH-HHcCcc---HhheeeeecCCCCEEEECCCCcHHHHHHHHhhc-ccCCEE
Confidence 357889999999999999999999999764 444332 235889999999999999999999999999999 667899
Q ss_pred eEeecceEecCC---------CcceeeeecCCCCC
Q psy18006 141 LFEISDIVYKDA---------TAGTLMFTPGGNRT 166 (180)
Q Consensus 141 iFEiG~V~~~~~---------~~~~l~~~~~G~~~ 166 (180)
+||+|+||..+. +...+++.++|...
T Consensus 78 lfeig~vfr~e~~~~~~~~~~ef~~l~~~~~g~~~ 112 (211)
T cd00768 78 LAEIGPAFRNEGGRRGLRRVREFTQLEGEVFGEDG 112 (211)
T ss_pred EEEEcceeecCCCccccccceeEEEcCEEEEcCCc
Confidence 999999997653 23477888888654
No 15
>smart00874 B5 tRNA synthetase B5 domain. This domain is found in phenylalanine-tRNA synthetase beta subunits.
Probab=99.51 E-value=1.3e-14 Score=99.06 Aligned_cols=40 Identities=33% Similarity=0.556 Sum_probs=34.0
Q ss_pred ccceEEeec--CCeEEEEcCCCCCCCCCchhhhhhhHhhhcc
Q psy18006 2 CLQTKILGS--GAEVSVSIPPTRHDIIHTCDIYEDIAIAYGY 41 (180)
Q Consensus 2 ~~~~~v~~~--~~~~~v~vP~~R~DI~~~~DliEEIaR~~Gy 41 (180)
++||++..+ ++.+.|++|+||+||++++||||||||+|||
T Consensus 30 ~lg~~~~~~~~~~~~~v~~P~~R~Di~~~~DliEei~r~~Gy 71 (71)
T smart00874 30 RLGFEVEVSGDDDTLEVTVPSYRFDILIEADLIEEVARIYGY 71 (71)
T ss_pred HCCCeEEecCCCCeEEEECCCCccccCcccHHHHHHHHHhCC
Confidence 355665533 4679999999999999999999999999998
No 16
>PF01409 tRNA-synt_2d: tRNA synthetases class II core domain (F); InterPro: IPR002319 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Phenylalanyl-tRNA synthetase (6.1.1.20 from EC) is an alpha2/beta2 tetramer composed of 2 subunits that belongs to class IIc. In eubacteria, a small subunit (pheS gene) can be designated as beta (E. coli) or alpha subunit (nomenclature adopted in InterPro). Reciprocally the large subunit (pheT gene) can be designated as alpha (E. coli) or beta (see IPR004531 from INTERPRO and IPR004532 from INTERPRO). In all other kingdoms the two subunits have equivalent length in eukaryota, and can be identified by specific signatures. The enzyme from Thermus thermophilus has an alpha 2 beta 2 type quaternary structure and is one of the most complicated members of the synthetase family. Identification of phenylalanyl-tRNA synthetase as a member of class II aaRSs was based only on sequence alignment of the small alpha-subunit with other synthetases [].; GO: 0000049 tRNA binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 3TUP_A 3HFV_A 3CMQ_A 3TEG_A 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B ....
Probab=99.49 E-value=2.8e-14 Score=119.70 Aligned_cols=116 Identities=28% Similarity=0.335 Sum_probs=95.3
Q ss_pred CCCC-cccccCCChhhHHHHHHHHHHHHCCCceeecccccChhHHHHHhccccCC-----CCcEEeeCCcc--cchHHHH
Q psy18006 47 TMPR-FASIARQVPLNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEF-----IPAVHIGNPKT--LEFQIAR 118 (180)
Q Consensus 47 ~~p~-~~~~~~~~~~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~~~~~~-----~~~v~l~NPis--~e~~~lR 118 (180)
++|. ....|..++.+++.++|+++|+++||+|+.++.+.+....+++|+++.+- .+.+-|.||.+ ++..+||
T Consensus 5 ~~p~~~~~~G~~hp~~~~~~~i~~~~~~~Gf~e~~~~~v~s~~~nFD~Ln~p~dHpaR~~~Dtfyi~~p~~~~~~~~vLR 84 (247)
T PF01409_consen 5 TLPGKRFTPGRLHPITKFIREIRDIFVGMGFQEVEGPEVESEFYNFDALNIPQDHPARDMQDTFYISNPYSAEEDYSVLR 84 (247)
T ss_dssp TSGCTTCCCSBTSHHHHHHHHHHHHHHCTTSEEESTTSEEEHHHHTGGGTSTTTSCGGCGTTSEBSCSSSBCECSSEEE-
T ss_pred cCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCeEeeCCeEEeeHHHHHhhCcCCCccccccccceeeeccccccchhhhhh
Confidence 4443 34578899999999999999999999999999998988888888876431 35688999999 9999999
Q ss_pred HhhHHHHHHHHHHhhCCCCCcceEeecceEecCCCc-------ceeeeecCCC
Q psy18006 119 TTLVPGLLKTLAANKKMPLPLKLFEISDIVYKDATA-------GTLMFTPGGN 164 (180)
Q Consensus 119 ~sLlpsLL~~l~~N~~~~~~~~iFEiG~V~~~~~~~-------~~l~~~~~G~ 164 (180)
+++.|++++++ |.++..|+++||+|+||+++..+ ..+.++++++
T Consensus 85 Thts~~~~~~l--~~~~~~p~kif~iG~VyR~D~~D~th~~~f~Qleg~~~~~ 135 (247)
T PF01409_consen 85 THTSPGQLRTL--NKHRPPPIKIFEIGKVYRRDEIDATHLPEFHQLEGLVVDK 135 (247)
T ss_dssp SSTHHHHHHHH--TTTSHSSEEEEEEEEEESSSCSBSSBESEEEEEEEEEEET
T ss_pred hhhhHHHHHHH--HHhcCCCeEEEecCceEecCCcccccCccceeEeeEEEec
Confidence 99999999999 66666799999999999998732 2466666665
No 17
>PRK09537 pylS pyrolysyl-tRNA synthetase; Reviewed
Probab=99.30 E-value=6.4e-12 Score=112.10 Aligned_cols=108 Identities=21% Similarity=0.269 Sum_probs=84.7
Q ss_pred cccCCChhhHHHHHHHHHHHHCCCceeecccccChhHHHHHhccccCCCCcEEeeCCc--ccchHHHHHhhHHHHHHHHH
Q psy18006 53 SIARQVPLNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEFIPAVHIGNPK--TLEFQIARTTLVPGLLKTLA 130 (180)
Q Consensus 53 ~~~~~~~~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~~~~~~~~~v~l~NPi--s~e~~~lR~sLlpsLL~~l~ 130 (180)
+.+..++...+.+.||+++.+.||+|+.|+.|++.+. ++.++... ...+.+++ .++..+||++|+|+|++.++
T Consensus 199 ~~g~~~~~s~Le~aIR~~f~~~GF~EV~TPtLt~ee~-~e~~g~~~----g~~i~~~my~ideel~LRpsLtPsLlr~la 273 (417)
T PRK09537 199 EEDREDYLGKLERDITKFFVDRGFLEIKSPILIPAEY-IERMGIDN----DTELSKQIFRVDKNFCLRPMLAPGLYNYLR 273 (417)
T ss_pred ccCCCCHHHHHHHHHHHHHHHCCCEEEECCeeecHHH-HHHhCCCC----cccchhhheeeCCceEehhhhHHHHHHHHH
Confidence 4567777889999999999999999999999998875 56666431 12344555 56789999999999999999
Q ss_pred HhhC-CCCCcceEeecceEecCCC-------cceeeeecCCCC
Q psy18006 131 ANKK-MPLPLKLFEISDIVYKDAT-------AGTLMFTPGGNR 165 (180)
Q Consensus 131 ~N~~-~~~~~~iFEiG~V~~~~~~-------~~~l~~~~~G~~ 165 (180)
.|.+ ...|+|+||+|+||..+.. ...+++.+.|..
T Consensus 274 ~n~k~~~~P~RIFEIG~VFR~E~~g~~hlrEf~Ql~~~iiGs~ 316 (417)
T PRK09537 274 KLDRILPDPIKIFEIGPCYRKESDGKEHLEEFTMVNFCQMGSG 316 (417)
T ss_pred hhhhcccCCeeEEEEeceEecCCCCCCCcceEEEEEEEEeCCc
Confidence 8865 4679999999999987542 347777777753
No 18
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated
Probab=99.29 E-value=1.7e-11 Score=106.81 Aligned_cols=116 Identities=13% Similarity=0.109 Sum_probs=95.4
Q ss_pred CCCCCCCCCc-ccccCCChhhHHHHHHHHHHHHCCCceeecccccChhHHHHHhccccCC-----CCcEEeeCCcccchH
Q psy18006 42 NNIPKTMPRF-ASIARQVPLNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEF-----IPAVHIGNPKTLEFQ 115 (180)
Q Consensus 42 d~i~~~~p~~-~~~~~~~~~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~~~~~~-----~~~v~l~NPis~e~~ 115 (180)
+.+..++|.. ...|..+|...+.++|+++++++||+|+.++.+.+....++.|+++.+- .+.+.| ++..
T Consensus 91 e~~d~t~p~~~~~~G~~HPl~~~~~~Ir~if~~mGF~ev~gpeIes~~~NFdaLn~P~dHPaR~~~DTfyI-----~~~~ 165 (339)
T PRK00488 91 ETIDVTLPGRRIELGSLHPITQTIEEIEDIFVGMGFEVAEGPEIETDYYNFEALNIPKDHPARDMQDTFYI-----DDGL 165 (339)
T ss_pred ccccccCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeCCccccHHHHHHHhCCCCCCcccccCceEEE-----cCCc
Confidence 4466677754 4578889999999999999999999999999999998888888875321 245667 5889
Q ss_pred HHHHhhHHHHHHHHHHhhCCCCCcceEeecceEecCC-Ccce------eeeecCCCC
Q psy18006 116 IARTTLVPGLLKTLAANKKMPLPLKLFEISDIVYKDA-TAGT------LMFTPGGNR 165 (180)
Q Consensus 116 ~lR~sLlpsLL~~l~~N~~~~~~~~iFEiG~V~~~~~-~~~~------l~~~~~G~~ 165 (180)
+||+++.|+++++++. +..|+++||+|+||..+. +..| +.+++.++.
T Consensus 166 lLRThTSp~qir~L~~---~~~Pirif~~G~VyR~D~~DatH~~~FhQleglvvd~~ 219 (339)
T PRK00488 166 LLRTHTSPVQIRTMEK---QKPPIRIIAPGRVYRNDSDDATHSPMFHQVEGLVVDKN 219 (339)
T ss_pred eeeccCcHHHHHHHHh---cCCCeEEEEeeeEEEcCCCCcccCcceeeEEEEEEeCC
Confidence 9999999999999976 456899999999999887 5556 888888764
No 19
>PRK06253 O-phosphoseryl-tRNA synthetase; Reviewed
Probab=99.08 E-value=1.3e-10 Score=105.76 Aligned_cols=110 Identities=23% Similarity=0.348 Sum_probs=85.7
Q ss_pred cccCCChhhHHHHHHHHHHHHCCCceeecccccChhHHHHHhccc---------------cC------------------
Q psy18006 53 SIARQVPLNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQK---------------ME------------------ 99 (180)
Q Consensus 53 ~~~~~~~~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~~~---------------~~------------------ 99 (180)
..|.++|......++|+.-..+||.|+++-..+++.+.++.||-+ ..
T Consensus 42 ~~~~~hp~~~ti~~lr~ayl~~gf~e~~np~iv~~~~~~~qfg~ea~avldr~fyl~glprp~vg~~~~~~~~i~~~~~~ 121 (529)
T PRK06253 42 SYGKPHPVYDTIERLREAYLRMGFEEMINPVIVDEQDIYKQFGPEAMAVLDRCFYLAGLPRPNVGISDEKIEQIEEILGR 121 (529)
T ss_pred cCCCCCcHHHHHHHHHHHHHhcChHhhcCceeecHHHHHHhhCHHHHHHHHHhhhhcCCCCCCCCcCHHHHHHHHHHhCC
Confidence 467889999999999999999999999999999998877777521 00
Q ss_pred -----------------------CC-------Cc--------EEe----------eCCcccchHHHHHhhHHHHHHHHHH
Q psy18006 100 -----------------------FI-------PA--------VHI----------GNPKTLEFQIARTTLVPGLLKTLAA 131 (180)
Q Consensus 100 -----------------------~~-------~~--------v~l----------~NPis~e~~~lR~sLlpsLL~~l~~ 131 (180)
++ .. ++| +-|.+ .+++||+||+||||+++++
T Consensus 122 ~~~~~~~e~l~~~lh~ykkg~~~gddl~~e~~~~l~~~~~~~~~~l~~vfpe~k~l~p~~-~~svLRtSLlPGLL~tLs~ 200 (529)
T PRK06253 122 DLSEEKIESLREVLHSYKKGEIDGDDLVLEISKALEVSDEMVLKILDEVFPEFKELKPES-SRLTLRSHMTSGWFITLSS 200 (529)
T ss_pred CCChhHHHHHHHHHHHhhcCCCccchhHHHHHHhcCCChHHHHHHHHHhChHhhhcCCcc-ccCccccchHHHHHHHHHH
Confidence 00 00 111 12333 4689999999999999999
Q ss_pred hhCC-CCCcceEeecceEecCC--CcceeeeecCC
Q psy18006 132 NKKM-PLPLKLFEISDIVYKDA--TAGTLMFTPGG 163 (180)
Q Consensus 132 N~~~-~~~~~iFEiG~V~~~~~--~~~~l~~~~~G 163 (180)
|+++ +.+++|||+|+||.++. +..+|+.+++|
T Consensus 201 Nl~Rg~~piRLFEIGRVFr~d~~eE~t~La~llsG 235 (529)
T PRK06253 201 LLEKRPLPIKLFSIDRCFRREQREDASRLMTYHSA 235 (529)
T ss_pred HHhCCCCCEEEEEEeeEEecCCccchhheeEEEEc
Confidence 9975 67999999999997753 55699999999
No 20
>PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional
Probab=98.29 E-value=2.5e-06 Score=78.00 Aligned_cols=111 Identities=18% Similarity=0.115 Sum_probs=77.7
Q ss_pred cccCCChhhHHHHHHHHHHHHCCCceeecccccChhHHHHHhcccc--C---CCCcEEeeCCcc----------------
Q psy18006 53 SIARQVPLNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKM--E---FIPAVHIGNPKT---------------- 111 (180)
Q Consensus 53 ~~~~~~~~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~~~~--~---~~~~v~l~NPis---------------- 111 (180)
..+..++...+.+.+|+++..+||+|+-+-.+-+.=..++.+..+. . -.+..-+.+|-.
T Consensus 228 ~~~~~~~~~~~~~~~~~~f~~~Gf~e~~~p~vE~~~~nfd~lf~p~~hpaR~~~dtf~~~~~~~~~~~~~~~~~v~~~he 307 (489)
T PRK04172 228 YPGKKHPYREFIDEVRDILVEMGFEEMKGPLVETEFWNFDALFQPQDHPAREMQDTFYLKYPGIGDLPEELVERVKEVHE 307 (489)
T ss_pred CCCCCChHHHHHHHHHHHHHHCCCEEeeCCeeeecCcccccccCCCCCCCCCccceEEECCcccccCcHHHHHHHHHHHh
Confidence 4567788889999999999999999997666555423233333211 0 123455555431
Q ss_pred ------------------cchHHHHHhhHHHHHHHHHHhhCCCCCcceEeecceEecCC-------CcceeeeecCCCC
Q psy18006 112 ------------------LEFQIARTTLVPGLLKTLAANKKMPLPLKLFEISDIVYKDA-------TAGTLMFTPGGNR 165 (180)
Q Consensus 112 ------------------~e~~~lR~sLlpsLL~~l~~N~~~~~~~~iFEiG~V~~~~~-------~~~~l~~~~~G~~ 165 (180)
...-+||+++.|++++.+..+. +.|+++||||+||..+. +-..++++++|..
T Consensus 308 ~g~~~~~~~~~y~~~~~~~~~~~LR~~~T~~~~r~l~~~~--~~p~rlFeiGrVFR~e~~d~~~l~Ef~ql~~~i~G~~ 384 (489)
T PRK04172 308 HGGDTGSRGWGYKWDEDIAKRLVLRTHTTALSARYLASRP--EPPQKYFSIGRVFRPDTIDATHLPEFYQLEGIVMGED 384 (489)
T ss_pred ccCCCCCccccCCcchhhhhccccccCChHHHHHHHHhcC--CCCeEEEEecceEcCCCCCcccCCchheEEEEEEeCC
Confidence 1134999999999999998743 46899999999997653 2346788999873
No 21
>TIGR00470 sepS O-phosphoseryl-tRNA(Cys) synthetase. This family of archaeal proteins resembles known phenylalanyl-tRNA synthetase alpha chains. Recently, it was shown to act in a proposed pathway of tRNA(Cys) indirect aminoacylation, resulting in Cys biosynthesis from O-phosphoserine, in certain archaea. It charges tRNA(Cys) with O-phosphoserine. The pscS gene product converts the phosphoserine to Cys.
Probab=97.95 E-value=1.3e-05 Score=72.92 Aligned_cols=112 Identities=19% Similarity=0.249 Sum_probs=83.2
Q ss_pred cccCCChhhHHHHHHHHHHHHCCCceeecccccChhHHHHHhccc---------------cC------------------
Q psy18006 53 SIARQVPLNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQK---------------ME------------------ 99 (180)
Q Consensus 53 ~~~~~~~~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~~~---------------~~------------------ 99 (180)
..|.++|......++|+.-..+||.|+++-..+++.+.++.||-+ ..
T Consensus 42 ~~gk~hpv~~ti~~lreayl~~gf~e~~np~iv~e~~v~kqfg~ea~avldrcfyl~glprp~vgis~~~~~~i~~~g~~ 121 (533)
T TIGR00470 42 VYGKPHPLMETIERLREAYLRMGFSEMVNPLIVDEMHIYKQFGPEAMAVLDRCFYLAGLPRPDVGLGNEKIEIIENLGID 121 (533)
T ss_pred cCCCCCcHHHHHHHHHHHHHhcChHhhcCceeecHHHHHHhhCHHHHHHHHHhhhhcCCCCCCcCcCHHHHHHHHHhCCC
Confidence 467888999999999999999999999999999998877777521 00
Q ss_pred ----------------------CCC-cEEe------------------------eCCcccchHHHHHhhHHHHHHHHHH-
Q psy18006 100 ----------------------FIP-AVHI------------------------GNPKTLEFQIARTTLVPGLLKTLAA- 131 (180)
Q Consensus 100 ----------------------~~~-~v~l------------------------~NPis~e~~~lR~sLlpsLL~~l~~- 131 (180)
+++ ...| +-|.|. ..+||++++|+++.+++.
T Consensus 122 ~~~~~~e~lr~~lh~ykkg~idgddl~~eia~~l~~~d~~~~~ild~vfpefk~l~p~s~-~~lLRTHTTpgqirtL~~L 200 (533)
T TIGR00470 122 IDDEKKERLREVFHLYKKGAIDGDDLVFEIAKALNVSNEMGLKVLETVFPEFKDLKPEST-TLTLRSHMTSGWFITLSSI 200 (533)
T ss_pred CChhHHHHHHHHHHHhhcCCCccchhHHHHHHhhCCchHHHHHHHHHhChhhhhcChHhh-CcccccCChhHHHHHHHHH
Confidence 000 0011 123232 347999999999999997
Q ss_pred hhCCCCCcceEeecceEecCCC-c-------ceeeeecCCCC
Q psy18006 132 NKKMPLPLKLFEISDIVYKDAT-A-------GTLMFTPGGNR 165 (180)
Q Consensus 132 N~~~~~~~~iFEiG~V~~~~~~-~-------~~l~~~~~G~~ 165 (180)
|.++..|+|+|++|+||..+.. + ..+.++++|..
T Consensus 201 ~~~~~~PiRIFsIGRVfRrD~~~DaTHl~eFhQlEGLVVded 242 (533)
T TIGR00470 201 IDKRKLPLKLFSIDRCFRREQREDRSHLMTYHSASCVVVDEE 242 (533)
T ss_pred hhcCCCCeEEEeeeeEEecCCCCCCccCceeeeEEEEEECCC
Confidence 7666789999999999998842 2 35667777765
No 22
>COG0016 PheS Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis]
Probab=97.52 E-value=0.0005 Score=60.23 Aligned_cols=118 Identities=20% Similarity=0.197 Sum_probs=86.7
Q ss_pred hhhhhHhhhccCCCCCCCCCcc-cccCCChhhHHHHHHHHHHHHCCCceeecccccChhHHHHHhccccCC-----CCcE
Q psy18006 31 IYEDIAIAYGYNNIPKTMPRFA-SIARQVPLNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEF-----IPAV 104 (180)
Q Consensus 31 liEEIaR~~Gyd~i~~~~p~~~-~~~~~~~~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~~~~~~-----~~~v 104 (180)
+..+..+-.-+..+..++|... ..|..++.....+++++++.++||+|+-..---+.-..++.++++.+- .+..
T Consensus 83 ~~~~~~~~l~~e~~dv~lp~~~~~~G~~Hpl~~~~e~i~~iF~~mGF~~~~gp~IE~d~~NFDaLn~P~dHPARdmqDTF 162 (335)
T COG0016 83 EAAGLWERLAFEKIDVTLPGRRIYPGSLHPLTQTIEEIEDIFLGMGFTEVEGPEIETDFYNFDALNIPQDHPARDMQDTF 162 (335)
T ss_pred HHHHHHHhhhccCCCcCCCCccCCCCCcChHHHHHHHHHHHHHHcCceeccCCcccccccchhhhcCCCCCCcccccceE
Confidence 3344456666777777877753 468889999999999999999999999887555554455666654321 2344
Q ss_pred EeeCCcccchHHHHHhhHHHHHHHHHHhhCCCCCcceEeecceEecCC
Q psy18006 105 HIGNPKTLEFQIARTTLVPGLLKTLAANKKMPLPLKLFEISDIVYKDA 152 (180)
Q Consensus 105 ~l~NPis~e~~~lR~sLlpsLL~~l~~N~~~~~~~~iFEiG~V~~~~~ 152 (180)
-+.+ +.+..+|||+--|--...+..|... |+++|-+|+||..+.
T Consensus 163 y~~~--~~~~~lLRTHTs~vq~R~l~~~~~~--P~k~~~~grvyR~D~ 206 (335)
T COG0016 163 YLKD--DREKLLLRTHTSPVQARTLAENAKI--PIKIFSPGRVYRNDT 206 (335)
T ss_pred EEcC--CCCceeecccCcHhhHHHHHhCCCC--CceEecccceecCCC
Confidence 4554 3336799999999999888777543 899999999999884
No 23
>PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional
Probab=97.42 E-value=0.00067 Score=62.27 Aligned_cols=100 Identities=22% Similarity=0.185 Sum_probs=75.1
Q ss_pred cccCCChhhHHHHHHHHHHHHCCCceeeccccc-ChhHHHHHhccccC-----CCCcEEeeCCccc--------------
Q psy18006 53 SIARQVPLNKLSDQLRGDIAQAGFTEVLTFALC-SRDDVSVKLRQKME-----FIPAVHIGNPKTL-------------- 112 (180)
Q Consensus 53 ~~~~~~~~~~~~~~ir~~L~~~Gf~Ev~tysl~-s~~~~~~~~~~~~~-----~~~~v~l~NPis~-------------- 112 (180)
..|..+|..++.+.+|+++.++||.|+-+-+++ +.-..++.++.+.+ -.+..-|.+|-..
T Consensus 224 ~~g~~HPl~~~~~~i~~if~~mGF~e~~~~~~ves~f~NFDaL~~PqdHPARd~~DTFyl~~~~~~~~~~~p~~~~~~Vk 303 (494)
T PTZ00326 224 GGGNLHPLLKVRREFREILLEMGFEEMPTNRYVESSFWNFDALFQPQQHPARDAQDTFFLSKPETSKVNDLDDDYVERVK 303 (494)
T ss_pred CCCCCChHHHHHHHHHHHHHhCCCEEecCCCCccccchhhhhhcCCCCCCCCCcCceEEEcCccccccccCcHHHHHHHH
Confidence 467788999999999999999999999776444 33334555554421 1346777776443
Q ss_pred ----------------------chHHHHHhhHHHHHHHHHHhhCC-----C-CCcceEeecceEecCC
Q psy18006 113 ----------------------EFQIARTTLVPGLLKTLAANKKM-----P-LPLKLFEISDIVYKDA 152 (180)
Q Consensus 113 ----------------------e~~~lR~sLlpsLL~~l~~N~~~-----~-~~~~iFEiG~V~~~~~ 152 (180)
...+||+...+.....++.+.+. . .|+++|-+|+||+.+.
T Consensus 304 ~~He~G~~gS~Gw~y~W~~e~a~~~vLRtHtTa~~aR~l~~~~~~~~~~~~~~P~k~fsigrVfR~d~ 371 (494)
T PTZ00326 304 KVHEVGGYGSIGWRYDWKLEEARKNILRTHTTAVSARMLYKLAQEYKKTGPFKPKKYFSIDRVFRNET 371 (494)
T ss_pred HHhccCCcCCcccccccccchhccccccCCCCHHHHHHHHhhccccccccCCCCceEEecCCEecCCC
Confidence 25799999999999999987432 2 4899999999999876
No 24
>PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain
Probab=97.38 E-value=0.00085 Score=61.48 Aligned_cols=100 Identities=21% Similarity=0.156 Sum_probs=74.5
Q ss_pred cccCCChhhHHHHHHHHHHHHCCCceeecccccChh-HHHHHhccccC-----CCCcEEeeCCccc--------------
Q psy18006 53 SIARQVPLNKLSDQLRGDIAQAGFTEVLTFALCSRD-DVSVKLRQKME-----FIPAVHIGNPKTL-------------- 112 (180)
Q Consensus 53 ~~~~~~~~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~-~~~~~~~~~~~-----~~~~v~l~NPis~-------------- 112 (180)
..|..+|..++.+.+++++.++||.|+-+-+++-.+ ..++.++.+.+ -.+..-|.+|-..
T Consensus 216 ~~G~~HPl~~~~~ei~~if~~mGF~e~~~g~~ves~f~NFDaL~~PqdHPARd~qDTFyl~~~~~~~~~p~~~~erVk~~ 295 (492)
T PLN02853 216 EGGHLHPLLKVRQQFRKIFLQMGFEEMPTNNFVESSFWNFDALFQPQQHPARDSHDTFFLKAPATTRQLPEDYVERVKTV 295 (492)
T ss_pred CCCCCCHHHHHHHHHHHHHHhCCCEEecCCCCeechhhhhhhhcCCCCCCCCCccceEEEcCccccccCcHHHHHHHHHH
Confidence 457788999999999999999999999655555433 33444544321 1345677766433
Q ss_pred --------------------chHHHHHhhHHHHHHHHHHhhCC-CCCcceEeecceEecCC
Q psy18006 113 --------------------EFQIARTTLVPGLLKTLAANKKM-PLPLKLFEISDIVYKDA 152 (180)
Q Consensus 113 --------------------e~~~lR~sLlpsLL~~l~~N~~~-~~~~~iFEiG~V~~~~~ 152 (180)
...+|||+-.+.-.+.+..+.+. ..|+++|-+|+||+.+.
T Consensus 296 He~G~~gS~Gw~y~W~~~~a~~~vLRTHTTa~s~r~L~~~~~~~~~p~k~fsigrVfR~d~ 356 (492)
T PLN02853 296 HESGGYGSIGYGYDWKREEANKNLLRTHTTAVSSRMLYKLAQKGFKPKRYFSIDRVFRNEA 356 (492)
T ss_pred HhcCCCCccccccccccchhcccccCCCCCHHHHHHHHHhhccCCCCcEEEeccceecCCC
Confidence 36899999999999999876543 46899999999999886
No 25
>cd00773 HisRS-like_core Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain. HisRS is a homodimer. It is responsible for the attachment of histidine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ. HisZ along with HisG catalyze the first reaction in histidine biosynthesis. HisZ is found only in a subset of bacteria and differs from HisRS in lacking a C-terminal anti-codon binding domain.
Probab=97.18 E-value=0.00098 Score=55.77 Aligned_cols=91 Identities=19% Similarity=0.181 Sum_probs=69.8
Q ss_pred hhHHHHHHHHHHHHCCCceeecccccChhHHHHHhccccCCCCcEEeeCCcccchHHHHHhhHHHHHHHHHHhhCC-CCC
Q psy18006 60 LNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEFIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKKM-PLP 138 (180)
Q Consensus 60 ~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~~~~~~~~~v~l~NPis~e~~~lR~sLlpsLL~~l~~N~~~-~~~ 138 (180)
...+.+.+++++...||.|+.|-.|...+.. ...+......+.+++..+- .+.-+||+.+.|++...++.|... ..|
T Consensus 5 ~~~l~~~l~~~f~~~Gy~~v~tP~le~~~~~-~~~~~~~~~~~~~~~~d~~-g~~l~LRpd~T~~iaR~~a~~~~~~~~p 82 (261)
T cd00773 5 RRYIEDTLREVFERYGYEEIDTPVFEYTELF-LRKSGDEVSKEMYRFKDKG-GRDLALRPDLTAPVARAVAENLLSLPLP 82 (261)
T ss_pred HHHHHHHHHHHHHHcCCEEeeccceeeHHHh-cccccccccceEEEEECCC-CCEEEeCCCCcHHHHHHHHhcCccCCCC
Confidence 3457888999999999999999999888753 2222111224577888763 456799999999999999888653 578
Q ss_pred cceEeecceEecCC
Q psy18006 139 LKLFEISDIVYKDA 152 (180)
Q Consensus 139 ~~iFEiG~V~~~~~ 152 (180)
+|+|.+|+||+...
T Consensus 83 ~k~~y~g~vfR~e~ 96 (261)
T cd00773 83 LKLYYIGPVFRYER 96 (261)
T ss_pred eEEEEEcCEEecCC
Confidence 99999999998654
No 26
>PRK00037 hisS histidyl-tRNA synthetase; Reviewed
Probab=97.08 E-value=0.00097 Score=59.17 Aligned_cols=91 Identities=14% Similarity=0.139 Sum_probs=69.1
Q ss_pred ChhhHHHHHHHHHHHHCCCceeecccccChhHHHHHhcccc--CCCCcEEeeCCcccchHHHHHhhHHHHHHHHHHhhCC
Q psy18006 58 VPLNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKM--EFIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKKM 135 (180)
Q Consensus 58 ~~~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~~~~--~~~~~v~l~NPis~e~~~lR~sLlpsLL~~l~~N~~~ 135 (180)
...+.+.+.+++.+...||+|+.|-.|...+......+... ..+..+++.++ +.+.-+||+.+.+++...++.|.+
T Consensus 19 ~~~~~i~~~i~~~~~~~Gy~ei~tP~le~~~~~~~~~g~~~~~~~~~~~~~~d~-~g~~l~LRpd~T~~~ar~~~~~~~- 96 (412)
T PRK00037 19 AKWQYVEDTIREVFERYGFSEIRTPIFEYTELFKRKVGEETDIVEKEMYTFQDK-GGRSLTLRPEGTAPVVRAVIEHKL- 96 (412)
T ss_pred HHHHHHHHHHHHHHHHcCCeEeeccccchHHHhccccCcccccccceeEEEEcC-CCCEEEecCCCcHHHHHHHHhCCC-
Confidence 34556788899999999999999988877764212112111 02456788877 566779999999999999988754
Q ss_pred CCCcceEeecceEecC
Q psy18006 136 PLPLKLFEISDIVYKD 151 (180)
Q Consensus 136 ~~~~~iFEiG~V~~~~ 151 (180)
.|+|+|++|+||+..
T Consensus 97 -~p~r~~~~g~vfR~e 111 (412)
T PRK00037 97 -QPFKLYYIGPMFRYE 111 (412)
T ss_pred -CCeEEEEEcCccccC
Confidence 789999999999855
No 27
>PF00587 tRNA-synt_2b: tRNA synthetase class II core domain (G, H, P, S and T) This Prosite entry contains all class II enzymes. seryl tRNA synthetase structure; InterPro: IPR002314 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain includes the glycine, histidine, proline, threonine and serine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3UH0_A 3UGT_C 3UGQ_A 1B76_B 1GGM_B 1ATI_A 1ADY_C 1ADJ_C 2I4O_A 2I4M_B ....
Probab=96.88 E-value=0.00086 Score=52.62 Aligned_cols=90 Identities=24% Similarity=0.293 Sum_probs=66.9
Q ss_pred hHHHHHHHHHHH-HCCCceeecccccChhHHHHHhccccC-CCCcEEeeCCcccchHHHHHhhHHHHHHHHHHhhCC---
Q psy18006 61 NKLSDQLRGDIA-QAGFTEVLTFALCSRDDVSVKLRQKME-FIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKKM--- 135 (180)
Q Consensus 61 ~~~~~~ir~~L~-~~Gf~Ev~tysl~s~~~~~~~~~~~~~-~~~~v~l~NPis~e~~~lR~sLlpsLL~~l~~N~~~--- 135 (180)
..+.+.+++.+. ..||+|+.+-.|++.+.. +.-|.... .+..+++.+.-.+++ +||++.-|++....+.....
T Consensus 3 ~~l~~~~~~~~~~~~G~~ev~~P~l~~~~~~-~~sg~~~~~~~~~~~~~~~~~~~~-~L~pt~~~~~~~~~~~~~~~~~~ 80 (173)
T PF00587_consen 3 NALERFIREEFVLKFGFQEVDTPILIPSEVW-EKSGHWDNFSDEMFKVKDRGDEEY-CLRPTSEPGIYSLFKNEIRSSYR 80 (173)
T ss_dssp HHHHHHHHHHHHHHTTEEEEB--SEEEHHHH-HHHSHHHHHGGGSEEEEETTTEEE-EE-SSSHHHHHHHHHHHEEBHGG
T ss_pred HHHHHHHHHHhHHhcCCEEEECCeEEehHHh-hhccccccccCCeeeeeecccccE-Eeccccccceeeeecceeeeccc
Confidence 457888999999 999999999999999864 44443111 134677777665444 99999999999999888442
Q ss_pred CCCcceEeecceEecCC
Q psy18006 136 PLPLKLFEISDIVYKDA 152 (180)
Q Consensus 136 ~~~~~iFEiG~V~~~~~ 152 (180)
..|+++|++|++|+...
T Consensus 81 ~LP~~~~~~g~~fR~E~ 97 (173)
T PF00587_consen 81 DLPLKLYQIGTCFRNEA 97 (173)
T ss_dssp GSSEEEEEEEEEEBSSS
T ss_pred cCCeEEeeccccccccc
Confidence 47999999999998774
No 28
>TIGR00442 hisS histidyl-tRNA synthetase. This model finds a histidyl-tRNA synthetase in every completed genome. Apparent second copies from Bacillus subtilis, Synechocystis sp., and Aquifex aeolicus are slightly shorter, more closely related to each other than to other hisS proteins, and actually serve as regulatory subunits for an enzyme of histidine biosynthesis. They were excluded from the seed alignment and score much lower than do single copy histidyl-tRNA synthetases of other genomes not included in the seed alignment. These putative second copies of HisS score below the trusted cutoff. The regulatory protein kinase GCN2 of Saccharomyces cerevisiae (YDR283c), and related proteins from other species designated eIF-2 alpha kinase, have a domain closely related to histidyl-tRNA synthetase that may serve to detect and respond to uncharged tRNA(his), an indicator of amino acid starvation; these regulatory proteins are not orthologous and so score below the noise cutoff.
Probab=96.74 E-value=0.0042 Score=54.88 Aligned_cols=92 Identities=15% Similarity=0.155 Sum_probs=68.7
Q ss_pred hhhHHHHHHHHHHHHCCCceeecccccChhHHHHHhcccc--CCCCcEEeeCCcccchHHHHHhhHHHHHHHHHHhhC-C
Q psy18006 59 PLNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKM--EFIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKK-M 135 (180)
Q Consensus 59 ~~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~~~~--~~~~~v~l~NPis~e~~~lR~sLlpsLL~~l~~N~~-~ 135 (180)
..+.+.+.+++++...||.|+.|-.|...+......+-.. ..+..+++..+ +.+.-+||+.+.+++...++.+.+ .
T Consensus 16 ~~~~i~~~i~~~f~~~Gy~~i~~P~le~~~~~~~~~g~~~~~~~~~~~~~~d~-~g~~l~LRpD~T~~iaR~~~~~~~~~ 94 (397)
T TIGR00442 16 KWQYIEETIREVFELYGFKEIRTPIFEYTELFARKVGEETDIVEKEMYTFKDK-GGRSLTLRPEGTAPVARAVIENKLLL 94 (397)
T ss_pred HHHHHHHHHHHHHHHcCCeEecCcccchHHHhhhccCccccccccceEEEECC-CCCEEeecCCCcHHHHHHHHhccccc
Confidence 4567888899999999999999999988775322111110 01346777766 455678999999999999888755 3
Q ss_pred CCCcceEeecceEecC
Q psy18006 136 PLPLKLFEISDIVYKD 151 (180)
Q Consensus 136 ~~~~~iFEiG~V~~~~ 151 (180)
..|.|+|.+|+||+.+
T Consensus 95 ~~p~r~~y~g~vfR~e 110 (397)
T TIGR00442 95 PKPFKLYYIGPMFRYE 110 (397)
T ss_pred CCCeEEEEEcCeecCC
Confidence 5689999999999855
No 29
>PF13393 tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI_E 3HRK_A 3LC0_A 1Z7N_A 1Z7M_D 3NET_A 1H4V_B 3OD1_A 4E51_B 3RAC_A ....
Probab=96.68 E-value=0.0025 Score=54.28 Aligned_cols=90 Identities=16% Similarity=0.146 Sum_probs=67.7
Q ss_pred hhHHHHHHHHHHHHCCCceeecccccChhHHHHHhccccCCCCcEEeeCCcccchHHHHHhhHHHHHHHHHHhhCCCCCc
Q psy18006 60 LNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEFIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKKMPLPL 139 (180)
Q Consensus 60 ~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~~~~~~~~~v~l~NPis~e~~~lR~sLlpsLL~~l~~N~~~~~~~ 139 (180)
.+...+++++++...||.|+.|-.|...+......+ ...++.+++.++ +.+.-+||+-+.+++.+.++.|.+...+.
T Consensus 13 ~~~i~~~l~~~f~~~Gy~~i~~P~le~~~~~~~~~~--~~~~~~~~~~D~-~G~~l~LR~D~T~~iaR~~a~~~~~~~~~ 89 (311)
T PF13393_consen 13 RERIESKLREVFERHGYEEIETPLLEYYELFLDKSG--EDSDNMYRFLDR-SGRVLALRPDLTVPIARYVARNLNLPRPK 89 (311)
T ss_dssp HHHHHHHHHHHHHHTT-EE-B--SEEEHHHHHCHSS--TTGGCSEEEECT-TSSEEEE-SSSHHHHHHHHHHCCGSSSSE
T ss_pred HHHHHHHHHHHHHHcCCEEEECCeEeecHHhhhccc--cchhhhEEEEec-CCcEeccCCCCcHHHHHHHHHhcCcCCCc
Confidence 345788899999999999999988888775322211 122468999998 88889999999999999999996556789
Q ss_pred ceEeecceEecCC
Q psy18006 140 KLFEISDIVYKDA 152 (180)
Q Consensus 140 ~iFEiG~V~~~~~ 152 (180)
|+|-+|+||....
T Consensus 90 r~~y~g~vfR~~~ 102 (311)
T PF13393_consen 90 RYYYIGPVFRYER 102 (311)
T ss_dssp EEEEEEEEEEEET
T ss_pred eEEEEcceeeccc
Confidence 9999999998653
No 30
>PLN02530 histidine-tRNA ligase
Probab=96.50 E-value=0.0055 Score=56.11 Aligned_cols=90 Identities=24% Similarity=0.170 Sum_probs=67.9
Q ss_pred hhHHHHHHHHHHHHCCCceeecccccChhHHHHHhccccCCCCcEEeeCCcccchHHHHHhhHHHHHHHHHHhhCC-CCC
Q psy18006 60 LNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEFIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKKM-PLP 138 (180)
Q Consensus 60 ~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~~~~~~~~~v~l~NPis~e~~~lR~sLlpsLL~~l~~N~~~-~~~ 138 (180)
.+.+.+.+++.+...||+|+.|-.|-..+.+....+-. ..++.+++..+ +.+.=+||+-+.|++...++.|.+. ..|
T Consensus 87 ~~~i~~~~~~~~~~~Gy~~I~tP~lE~~el~~~~~g~~-~~~~~y~f~D~-~g~~l~LRpD~T~~iaR~~~~~~~~~~~P 164 (487)
T PLN02530 87 RNWLFDHFREVSRLFGFEEVDAPVLESEELYIRKAGEE-ITDQLYNFEDK-GGRRVALRPELTPSLARLVLQKGKSLSLP 164 (487)
T ss_pred HHHHHHHHHHHHHHcCCEeccccccchHHHhccccCcc-cccceEEEECC-CCCEEecCCCCcHHHHHHHHhcccccCCC
Confidence 44567888999999999999999998876532222211 12346777765 4455699999999999999988653 579
Q ss_pred cceEeecceEecC
Q psy18006 139 LKLFEISDIVYKD 151 (180)
Q Consensus 139 ~~iFEiG~V~~~~ 151 (180)
+|+|.+|+||+.+
T Consensus 165 ~r~~y~g~vfR~e 177 (487)
T PLN02530 165 LKWFAIGQCWRYE 177 (487)
T ss_pred eEEEEEcCEEcCc
Confidence 9999999999754
No 31
>PRK12421 ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=96.44 E-value=0.0068 Score=54.07 Aligned_cols=92 Identities=11% Similarity=0.039 Sum_probs=68.9
Q ss_pred hhhHHHHHHHHHHHHCCCceeecccccChhHHHHHhccccCCCCcEEeeCCcccchHHHHHhhHHHHHHHHHHhhCCCCC
Q psy18006 59 PLNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEFIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKKMPLP 138 (180)
Q Consensus 59 ~~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~~~~~~~~~v~l~NPis~e~~~lR~sLlpsLL~~l~~N~~~~~~ 138 (180)
..+...+.+++++...||.|+.|-.|-..+.+....+. ......+++.++.+.+.-+||+=+.+++.+.++.|.+...|
T Consensus 23 ~~~~i~~~l~~~f~~~Gy~~I~tP~~E~~e~~~~~~g~-~~~~~~y~f~D~~~g~~l~LRpD~T~~iaR~~a~~~~~~~p 101 (392)
T PRK12421 23 KIERLRRRLLDLFASRGYQLVMPPLIEYLESLLTGAGQ-DLKLQTFKLIDQLSGRLMGVRADITPQVARIDAHLLNREGV 101 (392)
T ss_pred HHHHHHHHHHHHHHHcCCEEeeCcchhhHHHHhccCCc-cchhceEEEEcCCCCcEEEECCcCCHHHHHHHHhhcCCCCc
Confidence 34456888999999999999999999665542111121 11235788988876666789999999999988877544568
Q ss_pred cceEeecceEecC
Q psy18006 139 LKLFEISDIVYKD 151 (180)
Q Consensus 139 ~~iFEiG~V~~~~ 151 (180)
+|+|-+|+||+..
T Consensus 102 ~R~~Y~g~VfR~~ 114 (392)
T PRK12421 102 ARLCYAGSVLHTL 114 (392)
T ss_pred eEEEEeeeEEEcC
Confidence 9999999999743
No 32
>CHL00201 syh histidine-tRNA synthetase; Provisional
Probab=96.40 E-value=0.0076 Score=54.27 Aligned_cols=92 Identities=10% Similarity=0.051 Sum_probs=67.5
Q ss_pred hhhHHHHHHHHHHHHCCCceeecccccChhHHHHHhccccC--CCCcEEeeCCcccchHHHHHhhHHHHHHHHHHhhC-C
Q psy18006 59 PLNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKME--FIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKK-M 135 (180)
Q Consensus 59 ~~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~~~~~--~~~~v~l~NPis~e~~~lR~sLlpsLL~~l~~N~~-~ 135 (180)
..+.+.+.+++.+...||+||.|-.|-..+.+....+-..+ .++..++..+ +.+.-+||+-+.|++......|.. .
T Consensus 20 ~~~~i~~~i~~~~~~~Gy~~I~TP~~E~~e~~~~~~G~~~~~~~~~my~~~d~-~g~~l~LRpd~T~~iaR~~~~~~~~~ 98 (430)
T CHL00201 20 YWQFIHDKALTLLSLANYSEIRTPIFENSSLYDRGIGETTDIVNKEMYRFTDR-SNRDITLRPEGTAGIVRAFIENKMDY 98 (430)
T ss_pred HHHHHHHHHHHHHHHcCCeeecCcccchHHHHhcccCCcccccccceEEEEcC-CCCEEEeCCCCcHHHHHHHHHccccc
Confidence 34567888999999999999999999988863222221111 1346677665 445568999999999998766644 3
Q ss_pred -CCCcceEeecceEecC
Q psy18006 136 -PLPLKLFEISDIVYKD 151 (180)
Q Consensus 136 -~~~~~iFEiG~V~~~~ 151 (180)
..|+|+|++|+||+.+
T Consensus 99 ~~~p~R~~y~g~vfR~e 115 (430)
T CHL00201 99 HSNLQRLWYSGPMFRYE 115 (430)
T ss_pred cCCCeEEEEEcceecCC
Confidence 4579999999999754
No 33
>TIGR00443 hisZ_biosyn_reg ATP phosphoribosyltransferase, regulatory subunit. Apparant second copies of histidyl-tRNA synthetase, found in Bacillus subtilis, Synechocystis sp., Aquifex aeolicus, and others, are in fact a regulatory subunit of ATP phosphoribosyltransferase, and usually encoded by a gene adjacent to that encoding the catalytic subunit.
Probab=96.30 E-value=0.009 Score=51.49 Aligned_cols=91 Identities=15% Similarity=0.182 Sum_probs=68.2
Q ss_pred hhhHHHHHHHHHHHHCCCceeecccccChhHHHHHhccccCCCCcEEeeCCcccchHHHHHhhHHHHHHHHHHhhC-CCC
Q psy18006 59 PLNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEFIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKK-MPL 137 (180)
Q Consensus 59 ~~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~~~~~~~~~v~l~NPis~e~~~lR~sLlpsLL~~l~~N~~-~~~ 137 (180)
..+.+.+.+++.+...||.|+.|-.|-..+.....-+ ...++.+++..+- .+.-+||+-+.+++...++.+.+ ...
T Consensus 10 ~~~~i~~~l~~~~~~~Gy~~i~tP~le~~~~~~~~~~--~~~~~~~~~~d~~-g~~l~LRpD~T~~iaR~~~~~~~~~~~ 86 (314)
T TIGR00443 10 RKEEIERQLQDVFRSWGYQEIITPTLEYLDTLSAGGG--ILNEDLFKLFDSL-GRVLGLRPDMTTPIARAVSTRLRDRPL 86 (314)
T ss_pred HHHHHHHHHHHHHHHcCCeeccCcchhhHHHhcccCC--cchhceEEEECCC-CCEEeecCcCcHHHHHHHHHhcccCCC
Confidence 3456788889999999999999988887765322111 1124567787774 45669999999999999887754 356
Q ss_pred CcceEeecceEecCC
Q psy18006 138 PLKLFEISDIVYKDA 152 (180)
Q Consensus 138 ~~~iFEiG~V~~~~~ 152 (180)
|.|+|.+|+||....
T Consensus 87 p~r~~y~g~VfR~~~ 101 (314)
T TIGR00443 87 PLRLCYAGNVFRTNE 101 (314)
T ss_pred CeEEEEeceEeecCC
Confidence 899999999998544
No 34
>PRK12420 histidyl-tRNA synthetase; Provisional
Probab=96.27 E-value=0.013 Score=52.60 Aligned_cols=92 Identities=20% Similarity=0.155 Sum_probs=68.7
Q ss_pred hhhHHHHHHHHHHHHCCCceeecccccChhHHHHHhccc-cCCCCcEEeeCCcccchHHHHHhhHHHHHHHHHHhhCCCC
Q psy18006 59 PLNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQK-MEFIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKKMPL 137 (180)
Q Consensus 59 ~~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~~~-~~~~~~v~l~NPis~e~~~lR~sLlpsLL~~l~~N~~~~~ 137 (180)
..+.+.+++++++...||.|+.|-.|-..+....+.+.. ......+++..+ +...=+||+-+.+++.+.++.|.+...
T Consensus 20 ~~~~i~~~l~~~f~~~Gy~~i~tP~lE~~~~~~~~~~~~~~~~~~~~~~~D~-~g~~l~LRpD~T~~iaR~va~~~~~~~ 98 (423)
T PRK12420 20 LRNKIKRALEDVFERYGCKPLETPTLNMYELMSSKYGGGDEILKEIYTLTDQ-GKRDLALRYDLTIPFAKVVAMNPNIRL 98 (423)
T ss_pred HHHHHHHHHHHHHHHcCCEeccccccchHHHHhcccCCCcccccceEEEecC-CCceecccccccHHHHHHHHhCcCCCC
Confidence 344678889999999999999999888877532111111 111357888887 445569999999999999998864456
Q ss_pred CcceEeecceEecC
Q psy18006 138 PLKLFEISDIVYKD 151 (180)
Q Consensus 138 ~~~iFEiG~V~~~~ 151 (180)
|+|+|.+|+||+..
T Consensus 99 p~r~~y~g~vfR~~ 112 (423)
T PRK12420 99 PFKRYEIGKVFRDG 112 (423)
T ss_pred CeeEEEEcceECCC
Confidence 89999999999854
No 35
>PRK12292 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=96.14 E-value=0.011 Score=52.55 Aligned_cols=91 Identities=14% Similarity=0.132 Sum_probs=69.3
Q ss_pred hhHHHHHHHHHHHHCCCceeecccccChhHHHHHhccccCCCCcEEeeCCcccchHHHHHhhHHHHHHHHHHhhCC-CCC
Q psy18006 60 LNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEFIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKKM-PLP 138 (180)
Q Consensus 60 ~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~~~~~~~~~v~l~NPis~e~~~lR~sLlpsLL~~l~~N~~~-~~~ 138 (180)
.+.+.+.+++++...||.|+.|-.|-..+......+ +....+.+++..+.+...-+||+=+.+++.+.++.+.++ ..|
T Consensus 20 ~~~i~~~l~~~f~~~Gy~~i~tP~lE~~e~~~~~~g-~~~~~~~~~f~d~~~g~~l~LRpD~T~~iaR~~a~~~~~~~~p 98 (391)
T PRK12292 20 IEEIRRRLLDLFRRWGYEEVITPTLEYLDTLLAGGG-AILDLRTFKLVDQLSGRTLGLRPDMTAQIARIAATRLANRPGP 98 (391)
T ss_pred HHHHHHHHHHHHHHcCCceeeCcchhhHHHHhccCC-ccchhhhEEEeecCCCCEEEECCCCcHHHHHHHHHhccCCCCC
Confidence 445678899999999999999999987665322111 111245678887755667799999999999999888654 568
Q ss_pred cceEeecceEecC
Q psy18006 139 LKLFEISDIVYKD 151 (180)
Q Consensus 139 ~~iFEiG~V~~~~ 151 (180)
+|+|.+|+||+.+
T Consensus 99 ~r~~y~g~vfR~~ 111 (391)
T PRK12292 99 LRLCYAGNVFRAQ 111 (391)
T ss_pred eEEEeeceeeecC
Confidence 9999999999854
No 36
>cd00670 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain. This domain is the core catalytic domain of tRNA synthetases of the subgroup containing glycyl, histidyl, prolyl, seryl and threonyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. These enzymes belong to class II aminoacyl-tRNA synthetases (aaRS) based upon their structure and the presence of three characteristic sequence motifs in the core domain. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ and the accessory subunit of mitochondrial polymerase gamma (Pol gamma b) . Most class II tRNA synthetases are dimers, with this subgroup consisting of mostly homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=95.96 E-value=0.01 Score=48.14 Aligned_cols=92 Identities=15% Similarity=0.097 Sum_probs=66.8
Q ss_pred hHHHHHHHHHHHHCCCceeecccccChhHHHHHhc-cccCCCCcEEeeCCc---ccchHHHHHhhHHHHHHHHHHhhC--
Q psy18006 61 NKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLR-QKMEFIPAVHIGNPK---TLEFQIARTTLVPGLLKTLAANKK-- 134 (180)
Q Consensus 61 ~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~-~~~~~~~~v~l~NPi---s~e~~~lR~sLlpsLL~~l~~N~~-- 134 (180)
..+.+.+++.+...||+|+.|-.+...+.. +.-+ .+.-.++..++..+- ..+.-+||+...+++....+.+..
T Consensus 6 ~~l~~~~~~~~~~~G~~ei~~P~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LrP~~~~~i~~~~~~~~~~~ 84 (235)
T cd00670 6 RALERFLDDRMAEYGYQEILFPFLAPTVLF-FKGGHLDGYRKEMYTFEDKGRELRDTDLVLRPAACEPIYQIFSGEILSY 84 (235)
T ss_pred HHHHHHHHHHHHHcCCEEEECCeEcCHHHH-hhcCCcccchhhcCeeccCcccccCCeEEEecCCCHHHHHHHhccCccc
Confidence 457788889999999999999999998863 3332 111112345565543 134558999999999998887754
Q ss_pred CCCCcceEeecceEecCCC
Q psy18006 135 MPLPLKLFEISDIVYKDAT 153 (180)
Q Consensus 135 ~~~~~~iFEiG~V~~~~~~ 153 (180)
...|++++++|+||..+..
T Consensus 85 ~~lP~r~~~~g~~fR~E~~ 103 (235)
T cd00670 85 RALPLRLDQIGPCFRHEPS 103 (235)
T ss_pred hhcCeeeeeecccccCCCC
Confidence 2569999999999986543
No 37
>PRK12293 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=95.83 E-value=0.018 Score=49.21 Aligned_cols=86 Identities=9% Similarity=0.059 Sum_probs=66.5
Q ss_pred hhHHHHHHHHHHHHCCCceeecccccChhHHHHHhccccCCCCcEEeeCCcccchHHHHHhhHHHHHHHHHHhhC-CCCC
Q psy18006 60 LNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEFIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKK-MPLP 138 (180)
Q Consensus 60 ~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~~~~~~~~~v~l~NPis~e~~~lR~sLlpsLL~~l~~N~~-~~~~ 138 (180)
.+.+.+.+++.+...||+|+.|-+|-.-+. +... ..++.+++..+ +.+.-+||+=+.+++.+.++.|.+ ...|
T Consensus 22 ~~~i~~~l~~vf~~~Gy~~I~tP~lE~~e~----~~~~-~~~~~y~~~D~-~g~~l~LRpD~T~~iaR~~a~~~~~~~~p 95 (281)
T PRK12293 22 KREIENVASEILYENGFEEIVTPFFSYHQH----QSIA-DEKELIRFSDE-KNHQISLRADSTLDVVRIVTKRLGRSTEH 95 (281)
T ss_pred HHHHHHHHHHHHHHcCCeEeeccceeehhh----hccc-chhceEEEECC-CCCEEEECCcCCHHHHHHHHHhcccCCCc
Confidence 445678888999999999999999965443 2211 12456788877 566779999999999999988765 3568
Q ss_pred cceEeecceEecC
Q psy18006 139 LKLFEISDIVYKD 151 (180)
Q Consensus 139 ~~iFEiG~V~~~~ 151 (180)
.|+|-+|+||+..
T Consensus 96 ~r~~Y~g~vfR~~ 108 (281)
T PRK12293 96 KKWFYIQPVFRYP 108 (281)
T ss_pred eeEEEeccEEecC
Confidence 9999999999854
No 38
>cd00771 ThrRS_core Threonyl-tRNA synthetase (ThrRS) class II core catalytic domain. ThrRS is a homodimer. It is responsible for the attachment of threonine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain.
Probab=95.65 E-value=0.024 Score=48.59 Aligned_cols=92 Identities=18% Similarity=0.117 Sum_probs=65.7
Q ss_pred hhhHHHHHHHHHHHHCCCceeecccccChhHHHHHhccccC-CCCcEEeeCCcccchHHHHHhhHHHHHHHHHHhhC--C
Q psy18006 59 PLNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKME-FIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKK--M 135 (180)
Q Consensus 59 ~~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~~~~~-~~~~v~l~NPis~e~~~lR~sLlpsLL~~l~~N~~--~ 135 (180)
-.+.+.+.+++.+...||+|+.|-.+.+.+. ++.-+.... .++..++.. ..+.-+||++-.|++....+.+.. +
T Consensus 32 l~~~l~~~~~~~~~~~Gy~ev~tP~l~~~~l-~~~sg~~~~~~~~my~~~~--~~~~l~LRP~~~~~~~~~~~~~~~s~~ 108 (298)
T cd00771 32 IRNELEDFLRELQRKRGYQEVETPIIYNKEL-WETSGHWDHYRENMFPFEE--EDEEYGLKPMNCPGHCLIFKSKPRSYR 108 (298)
T ss_pred HHHHHHHHHHHHHHHcCCEEEECCeecCHHH-HhhCCCccccccCceEecc--CCceEEEcccCCHHHHHHHHhhccchh
Confidence 3456778888989999999999999999986 343332111 134455532 223458999999999888776543 3
Q ss_pred CCCcceEeecceEecCCC
Q psy18006 136 PLPLKLFEISDIVYKDAT 153 (180)
Q Consensus 136 ~~~~~iFEiG~V~~~~~~ 153 (180)
..|+|++++|+||+.+..
T Consensus 109 ~LPlr~~~~g~vfR~E~~ 126 (298)
T cd00771 109 DLPLRLAEFGTVHRYEQS 126 (298)
T ss_pred hCCeEEEEecCcccCCCC
Confidence 579999999999986643
No 39
>PRK12295 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=95.35 E-value=0.054 Score=48.12 Aligned_cols=90 Identities=10% Similarity=-0.024 Sum_probs=67.5
Q ss_pred hhhHHHHHHHHHHHHCCCceeecccccChhHHHHHhccccCCCCcEEeeCCcccchHHHHHhhHHHHHHHHHHhhCCCCC
Q psy18006 59 PLNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEFIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKKMPLP 138 (180)
Q Consensus 59 ~~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~~~~~~~~~v~l~NPis~e~~~lR~sLlpsLL~~l~~N~~~~~~ 138 (180)
......+++++.+...||.|+.|-.|-..+.+....+-. ..+..+++..+- ...-+||+=+.+++.+....| +...|
T Consensus 6 ~~~~i~~~i~~~f~~~Gy~~I~tP~lE~~e~~~~~~g~~-~~~~~~~f~D~~-G~~l~LRpD~T~piaR~~~~~-~~~~p 82 (373)
T PRK12295 6 ASAAAAEALLASFEAAGAVRVDPPILQPAEPFLDLSGED-IRRRIFVTSDEN-GEELCLRPDFTIPVCRRHIAT-AGGEP 82 (373)
T ss_pred hHHHHHHHHHHHHHHcCCEEeeCCccccHHHhhhccCch-hhcceEEEECCC-CCEEeeCCCCcHHHHHHHHHc-CCCCC
Confidence 455788899999999999999999998877532222211 113467787773 455699999999999987665 34568
Q ss_pred cceEeecceEecC
Q psy18006 139 LKLFEISDIVYKD 151 (180)
Q Consensus 139 ~~iFEiG~V~~~~ 151 (180)
.|+|=+|+||+.+
T Consensus 83 ~R~~Y~g~VfR~~ 95 (373)
T PRK12295 83 ARYAYLGEVFRQR 95 (373)
T ss_pred eEEEEEccEEECC
Confidence 9999999999864
No 40
>PRK14799 thrS threonyl-tRNA synthetase; Provisional
Probab=95.02 E-value=0.041 Score=51.32 Aligned_cols=92 Identities=13% Similarity=0.080 Sum_probs=64.6
Q ss_pred hhhHHHHHHHHHHHHCCCceeecccccChhHHHHHhccccCCC-CcEEeeCCcccchHHHHHhhHHHHHHHHHHhhC-C-
Q psy18006 59 PLNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEFI-PAVHIGNPKTLEFQIARTTLVPGLLKTLAANKK-M- 135 (180)
Q Consensus 59 ~~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~~~~~~~-~~v~l~NPis~e~~~lR~sLlpsLL~~l~~N~~-~- 135 (180)
-...+.+.+++.+...||+||.|-.+.+.+. ++.-+...... +...+ -+..+.-+||+..-|++....+...+ .
T Consensus 170 i~~~L~~~~r~~~~~~Gy~eV~TP~i~~~eL-~k~SGh~~~y~~~mf~~--~~~~e~~~LrPm~cp~~~~~~~~~~~Syr 246 (545)
T PRK14799 170 IRNELIAFMREINDSMGYQEVYTSHVFKTDI-WKISGHYTLYRDKLIVF--NMEGDEYGVKPMNCPAHILIYKSKPRTYR 246 (545)
T ss_pred HHHHHHHHHHHHHHHcCCeEEECCccchHHH-Hhhccccccchhhccee--eccCceEEeccCCCHHHHHHHhccccChh
Confidence 3456778889999999999999999877764 44333221111 11112 12345568999999999988887755 3
Q ss_pred CCCcceEeecceEecCCC
Q psy18006 136 PLPLKLFEISDIVYKDAT 153 (180)
Q Consensus 136 ~~~~~iFEiG~V~~~~~~ 153 (180)
..|+|+||+|.||+.+..
T Consensus 247 dLPlR~~e~g~vfR~E~s 264 (545)
T PRK14799 247 DLPIRFSEFGHVYRWEKK 264 (545)
T ss_pred hCCHhhEEecceecCCCC
Confidence 579999999999986654
No 41
>TIGR00418 thrS threonyl-tRNA synthetase. This model represents the threonyl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. Note that B. subtilis has closely related isozymes thrS and thrZ. The N-terminal regions are quite dissimilar between archaeal and eubacterial forms, while some eukaryotic forms are missing sequence there altogether..
Probab=94.94 E-value=0.034 Score=51.49 Aligned_cols=92 Identities=15% Similarity=0.065 Sum_probs=66.3
Q ss_pred hhhHHHHHHHHHHHHCCCceeecccccChhHHHHHhccccC-CCCcEEeeCCcccchHHHHHhhHHHHHHHHHHhhC-C-
Q psy18006 59 PLNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKME-FIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKK-M- 135 (180)
Q Consensus 59 ~~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~~~~~-~~~~v~l~NPis~e~~~lR~sLlpsLL~~l~~N~~-~- 135 (180)
-.+.+.+.+++.+...||+|+.|-.|.+.+. +..-+.... .++..++... ..+.-+||+.-.|++......+.. .
T Consensus 202 ~~~~i~~~~~~~~~~~G~~ev~tP~l~~~~l-~~~sg~~~~~~~emy~~~d~-~~~~~~LrP~~~~~i~~~~~~~~~s~~ 279 (563)
T TIGR00418 202 IRNLLEDFVRQKQIKYGYMEVETPIMYDLEL-WEISGHWDNYKERMFPFTEL-DNREFMLKPMNCPGHFLIFKSSLRSYR 279 (563)
T ss_pred HHHHHHHHHHHHHHHcCCEEEECCccCCHHH-HHhcCCcccchhhcceeccC-CCceEEEecCCCHHHHHHHhCcCCChH
Confidence 3456788889999999999999999998875 443231111 1233444322 335568999999999999888865 2
Q ss_pred CCCcceEeecceEecCC
Q psy18006 136 PLPLKLFEISDIVYKDA 152 (180)
Q Consensus 136 ~~~~~iFEiG~V~~~~~ 152 (180)
..|+++|++|++|+.+.
T Consensus 280 ~lP~rl~~~g~~fR~E~ 296 (563)
T TIGR00418 280 DLPLRIAELGYSHRYEQ 296 (563)
T ss_pred HCCceeeEeccccCCCC
Confidence 46999999999998663
No 42
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed
Probab=94.72 E-value=0.052 Score=50.99 Aligned_cols=92 Identities=17% Similarity=0.157 Sum_probs=66.6
Q ss_pred hhhHHHHHHHHHHHHCCCceeecccccChhHHHHHhcc-ccCCCCcEEeeCCcccchHHHHHhhHHHHHHHHHHhhCC--
Q psy18006 59 PLNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQ-KMEFIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKKM-- 135 (180)
Q Consensus 59 ~~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~~-~~~~~~~v~l~NPis~e~~~lR~sLlpsLL~~l~~N~~~-- 135 (180)
..+.+.+.+++.+...||+|+.|-.|.+.+.. ..-+. +.-.++..++... +.+.=+||+...|+.....+.+.+.
T Consensus 272 ~~~~i~~~~~~~~~~~Gy~ei~tP~le~~~l~-~~~g~~~~~~~~my~~~d~-~~~~~~LRP~~~~~~~r~~~~~~~s~~ 349 (638)
T PRK00413 272 IRRELERYIRRKLRKAGYQEVKTPQILDRELW-ETSGHWDHYRENMFPTTES-DGEEYALKPMNCPGHVQIYKQGLRSYR 349 (638)
T ss_pred HHHHHHHHHHHHHHHCCCEEEECCeeCCHHHH-HhcCChhhhhhccceeecC-CCcEEEEecCCcHHHHHHHhCcCCChh
Confidence 34567888899999999999999999999863 33221 1101233444332 3455699999999988888877552
Q ss_pred CCCcceEeecceEecCC
Q psy18006 136 PLPLKLFEISDIVYKDA 152 (180)
Q Consensus 136 ~~~~~iFEiG~V~~~~~ 152 (180)
..|+|+|++|+||+.+.
T Consensus 350 ~lP~r~~~~g~~fR~E~ 366 (638)
T PRK00413 350 DLPLRLAEFGTVHRYEP 366 (638)
T ss_pred hCCceeeeccCeecCCC
Confidence 56999999999998654
No 43
>PRK12305 thrS threonyl-tRNA synthetase; Reviewed
Probab=94.69 E-value=0.042 Score=51.06 Aligned_cols=92 Identities=16% Similarity=0.081 Sum_probs=65.8
Q ss_pred hhhHHHHHHHHHHHHCCCceeecccccChhHHHHHhccc-cCCCCcEEeeCCcccchHHHHHhhHHHHHHHHHHhhC-C-
Q psy18006 59 PLNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQK-MEFIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKK-M- 135 (180)
Q Consensus 59 ~~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~~~-~~~~~~v~l~NPis~e~~~lR~sLlpsLL~~l~~N~~-~- 135 (180)
..+.+.+.+++.+...||+||.|-.|.+.+. ++.-+.. .-.++..++... ..+.-+||+.-.|+.....+.+.+ .
T Consensus 208 ~~~~l~~~~~~~~~~~Gy~ev~tP~le~~~l-~~~sg~~~~~~~~my~~~d~-~~~~~~LRP~~~~~~~~~~~~~~~s~~ 285 (575)
T PRK12305 208 IRREIEDYLRKEHLKRGYEFVYTPHIGKSDL-WKTSGHLDNYKENMFPPMEI-DEEEYYLKPMNCPGHILIYKSRLRSYR 285 (575)
T ss_pred HHHHHHHHHHHHHHHcCCEEEECCccCCHHH-HhhcCCcccchhhccccccc-CCceEEEecCCCHHHHHHHhcccCChh
Confidence 4556788889999999999999999999986 4432211 101233444332 345668999999998888776654 2
Q ss_pred CCCcceEeecceEecCC
Q psy18006 136 PLPLKLFEISDIVYKDA 152 (180)
Q Consensus 136 ~~~~~iFEiG~V~~~~~ 152 (180)
..|+|+|++|+||+.+.
T Consensus 286 ~lP~r~~~~g~~fR~E~ 302 (575)
T PRK12305 286 DLPLRLAEFGTVYRYEK 302 (575)
T ss_pred hCCHhhEEecccccCCC
Confidence 56999999999998654
No 44
>PRK09194 prolyl-tRNA synthetase; Provisional
Probab=94.57 E-value=0.084 Score=49.25 Aligned_cols=92 Identities=17% Similarity=0.169 Sum_probs=62.7
Q ss_pred hhhHHHHHHHHHHHHCCCceeecccccChhHHHHHhcc-ccCCCCcEEeeCCcccchHHHHHhhHHHHHHHHHHhhC--C
Q psy18006 59 PLNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQ-KMEFIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKK--M 135 (180)
Q Consensus 59 ~~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~~-~~~~~~~v~l~NPis~e~~~lR~sLlpsLL~~l~~N~~--~ 135 (180)
..+.+.+.+++.+...||+|+.+-.|.+.+. ++.=+. +.-.++..++.+...++ =+||++--+.+...++.... +
T Consensus 49 ~~~~i~~~i~~~~~~~G~~ei~~P~l~~~~l-~~~sg~~~~~~~emf~~~d~~~~~-l~LrPt~e~~~~~~~~~~~~s~~ 126 (565)
T PRK09194 49 VLRKIENIVREEMNKIGAQEVLMPALQPAEL-WQESGRWEEYGPELLRLKDRHGRD-FVLGPTHEEVITDLVRNEIKSYK 126 (565)
T ss_pred HHHHHHHHHHHHHHHcCCEEEECcccCcHHH-HhhcCCccccchhceEEecCCCCE-EEECCCChHHHHHHHHhhhhhcc
Confidence 4556788899999999999999999988875 433221 11113456676654444 46888665555555554433 3
Q ss_pred CCCcceEeecceEecCC
Q psy18006 136 PLPLKLFEISDIVYKDA 152 (180)
Q Consensus 136 ~~~~~iFEiG~V~~~~~ 152 (180)
..|+++|++|.+|+.+.
T Consensus 127 ~LP~r~yqi~~~fR~E~ 143 (565)
T PRK09194 127 QLPLNLYQIQTKFRDEI 143 (565)
T ss_pred cCCeEEEEeeCCccCCC
Confidence 57999999999998764
No 45
>cd00772 ProRS_core Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain.
Probab=94.56 E-value=0.092 Score=44.35 Aligned_cols=94 Identities=19% Similarity=0.084 Sum_probs=64.7
Q ss_pred hhhHHHHHHHHHHHHCCCceeecccccChhHHHHHhccccC-C-CCcEEeeCCcc---cchHHHHHhhHHHHHHHHHHhh
Q psy18006 59 PLNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKME-F-IPAVHIGNPKT---LEFQIARTTLVPGLLKTLAANK 133 (180)
Q Consensus 59 ~~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~~~~~-~-~~~v~l~NPis---~e~~~lR~sLlpsLL~~l~~N~ 133 (180)
-.+++.+.+++.+...||+|+.+-.|.+.+. +++-+...+ . ++...+...-. ++.=+||++--+.+....+.+.
T Consensus 34 i~~~I~~~i~~~~~~~G~~ev~~P~l~~~~~-~~~~g~~~~~~~~e~~~~~~~~~~~~~~~l~LrPt~e~~~~~~~~~~i 112 (264)
T cd00772 34 ILDKIENVLDKMFKEHGAQNALFPFFILASF-LEKEAEHDEGFSKELAVFKDAGDEELEEDFALRPTLEENIGEIAAKFI 112 (264)
T ss_pred HHHHHHHHHHHHHHHcCCeEEECCeeccHHH-HhhcCCcccccCccceEEEeCCCCccCceEEECCCCCHHHHHHHHhhh
Confidence 4556788888889999999999999999885 344332111 1 12233322111 1334789999999888877775
Q ss_pred C--CCCCcceEeecceEecCCC
Q psy18006 134 K--MPLPLKLFEISDIVYKDAT 153 (180)
Q Consensus 134 ~--~~~~~~iFEiG~V~~~~~~ 153 (180)
. +..|++++++|.+|+.+..
T Consensus 113 ~s~~~LPlrl~~~~~~fR~E~r 134 (264)
T cd00772 113 KSWKDLPQHLNQIGNKFRDEIR 134 (264)
T ss_pred hhhhccCeeEEEEeCeEeCcCC
Confidence 4 3579999999999987643
No 46
>PRK12325 prolyl-tRNA synthetase; Provisional
Probab=94.46 E-value=0.097 Score=47.36 Aligned_cols=92 Identities=16% Similarity=0.168 Sum_probs=58.5
Q ss_pred hhhHHHHHHHHHHHHCCCceeecccccChhHHHHHhccccC-CCCcEEeeCCcccchHHHHHhh---HHHHHHHHHHhhC
Q psy18006 59 PLNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKME-FIPAVHIGNPKTLEFQIARTTL---VPGLLKTLAANKK 134 (180)
Q Consensus 59 ~~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~~~~~-~~~~v~l~NPis~e~~~lR~sL---lpsLL~~l~~N~~ 134 (180)
-.+++.+.+++.+...||+|+.|-.+.+.+. ++.=+.... .++..++..... +.=+||++= ...+.+....+.
T Consensus 49 i~~~i~~~i~~~~~~~G~~ev~~P~l~~~~l-~~~sg~~~~~~~emf~~~d~~~-~~~~L~Pt~e~~~~~~~~~~~~sy- 125 (439)
T PRK12325 49 VLKKIENIVREEQNRAGAIEILMPTIQPADL-WRESGRYDAYGKEMLRIKDRHD-REMLYGPTNEEMITDIFRSYVKSY- 125 (439)
T ss_pred HHHHHHHHHHHHHHHcCCEEEECCccccHHH-HhhcCCccccchhheEEecCCC-CEEEEcCCCcHHHHHHHHHHhhhc-
Confidence 4557788899999999999999999998875 332221111 123455544332 334567633 334444443332
Q ss_pred CCCCcceEeecceEecCCC
Q psy18006 135 MPLPLKLFEISDIVYKDAT 153 (180)
Q Consensus 135 ~~~~~~iFEiG~V~~~~~~ 153 (180)
+..|+++|++|.+|+.+..
T Consensus 126 rdLPlrl~q~~~~fR~E~~ 144 (439)
T PRK12325 126 KDLPLNLYHIQWKFRDEIR 144 (439)
T ss_pred hhhchHheEecCEecCCCC
Confidence 3579999999999987644
No 47
>cd00779 ProRS_core_prok Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from prokaryotes and from the mitochondria of eukaryotes.
Probab=94.45 E-value=0.058 Score=45.25 Aligned_cols=92 Identities=17% Similarity=0.165 Sum_probs=58.5
Q ss_pred hhhHHHHHHHHHHHHCCCceeecccccChhHHHHHhccc-cCCCCcEEeeCCcccchHHHHHhhHHHHHHHHHHhhC--C
Q psy18006 59 PLNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQK-MEFIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKK--M 135 (180)
Q Consensus 59 ~~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~~~-~~~~~~v~l~NPis~e~~~lR~sLlpsLL~~l~~N~~--~ 135 (180)
-.+.+.+.+++.+...||+|+.+-.|.+.+.. +.-+.. .-.++..++.+.-.++ =+||++--+.+-..++.... +
T Consensus 33 l~~~i~~~~~~~~~~~G~~ei~~P~l~~~~~~-~~sg~~~~~~~emy~~~d~~~~~-l~LrPt~e~~~t~~~~~~i~s~~ 110 (255)
T cd00779 33 VLKKIENIIREEMNKIGAQEILMPILQPAELW-KESGRWDAYGPELLRLKDRHGKE-FLLGPTHEEVITDLVANEIKSYK 110 (255)
T ss_pred HHHHHHHHHHHHHHHcCCEEEECCccCCHHHH-HhcCCccccCcccEEEecCCCCe-EEEecCCcHHHHHHHHhccccHh
Confidence 34567777888898999999999999998864 322321 1113455665433333 36777744444433333322 3
Q ss_pred CCCcceEeecceEecCC
Q psy18006 136 PLPLKLFEISDIVYKDA 152 (180)
Q Consensus 136 ~~~~~iFEiG~V~~~~~ 152 (180)
..|+++|++|++|+.+.
T Consensus 111 ~LPlr~~~~~~~FR~E~ 127 (255)
T cd00779 111 QLPLNLYQIQTKFRDEI 127 (255)
T ss_pred hCCHHHHhCcceecCCC
Confidence 57999999999998764
No 48
>PRK12444 threonyl-tRNA synthetase; Reviewed
Probab=94.34 E-value=0.056 Score=51.03 Aligned_cols=91 Identities=13% Similarity=0.085 Sum_probs=64.1
Q ss_pred hhhHHHHHHHHHHHHCCCceeecccccChhHHHHHhccccCC-CCcEEeeCCcccchHHHHHhhHHHHHHHHHHhhC--C
Q psy18006 59 PLNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEF-IPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKK--M 135 (180)
Q Consensus 59 ~~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~~~~~~-~~~v~l~NPis~e~~~lR~sLlpsLL~~l~~N~~--~ 135 (180)
-...+.+.+++.+...||+||.|-.|.+.+. ++.-+..... ++...+ ....+.=+||++--|++....+...+ +
T Consensus 276 ~~~~i~~~~~~~~~~~G~~~v~tP~l~~~~l-~~~sG~~~~~~~emy~~--d~~~~~~~LrP~~~~~~~~~~~~~~~sy~ 352 (639)
T PRK12444 276 IRNELEAFLREIQKEYNYQEVRTPFMMNQEL-WERSGHWDHYKDNMYFS--EVDNKSFALKPMNCPGHMLMFKNKLHSYR 352 (639)
T ss_pred HHHHHHHHHHHHHHHcCCEEEECCccCCHHH-HhhcCChhhhhhhcCee--cCCCcEEEEccCCCHHHHHHHhCcccChh
Confidence 3445788899999999999999999999986 4432311111 112211 23344446999999999999865544 2
Q ss_pred CCCcceEeecceEecCC
Q psy18006 136 PLPLKLFEISDIVYKDA 152 (180)
Q Consensus 136 ~~~~~iFEiG~V~~~~~ 152 (180)
..|+++|++|.+|+.+.
T Consensus 353 ~LP~r~~~~g~~fR~E~ 369 (639)
T PRK12444 353 ELPIRMCEFGQVHRHEF 369 (639)
T ss_pred hCCceeEEeccccCCCC
Confidence 56999999999998654
No 49
>cd00770 SerRS_core Seryl-tRNA synthetase (SerRS) class II core catalytic domain. SerRS is responsible for the attachment of serine to the 3' OH group of ribose of the appropriate tRNA. This domain It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. SerRS synthetase is a homodimer.
Probab=94.33 E-value=0.042 Score=47.16 Aligned_cols=87 Identities=18% Similarity=0.024 Sum_probs=62.9
Q ss_pred hhHHHHHHHHHHHHCCCceeecccccChhHHHHHhccccC-CCCcEEeeCCcccchHHHHHhhHHHHHHHHHHhhC--CC
Q psy18006 60 LNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKME-FIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKK--MP 136 (180)
Q Consensus 60 ~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~~~~~-~~~~v~l~NPis~e~~~lR~sLlpsLL~~l~~N~~--~~ 136 (180)
...+.+.+++.+...||+|+.+-.|++.+. ++.-+.... .++..++.+ +.-+||++--+.+....+.... +.
T Consensus 55 ~~~l~~~~~~~~~~~G~~ev~~P~l~~~~l-~~~sg~~~~~~~~~f~v~~----~~~~L~pt~e~~~~~l~~~~~~s~~~ 129 (297)
T cd00770 55 ERALINFALDFLTKRGFTPVIPPFLVRKEV-MEGTGQLPKFDEQLYKVEG----EDLYLIATAEVPLAALHRDEILEEEE 129 (297)
T ss_pred HHHHHHHHHHHHHHCCCEEEECcccccHHH-HhhcCcCccChhcccEecC----CCEEEeecCCHHHHHHHhcccCCHhh
Confidence 445777789999999999999999999986 454443211 234556654 4458898888888776654433 35
Q ss_pred CCcceEeecceEecC
Q psy18006 137 LPLKLFEISDIVYKD 151 (180)
Q Consensus 137 ~~~~iFEiG~V~~~~ 151 (180)
.|+++|++|++|+.+
T Consensus 130 LPlr~~~~~~~fR~E 144 (297)
T cd00770 130 LPLKYAGYSPCFRKE 144 (297)
T ss_pred CCchheecChhHhCc
Confidence 799999999999754
No 50
>TIGR00409 proS_fam_II prolyl-tRNA synthetase, family II. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent groups. This group includes enzymes from Escherichia coli, Bacillus subtilis, Aquifex aeolicus, the spirochete Treponema pallidum, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae. The other group includes the Pro-specific domain of a human multifunctional tRNA ligase and the prolyl-tRNA synthetases from the Archaea, the Mycoplasmas, and the spirochete Borrelia burgdorferi.
Probab=94.30 E-value=0.13 Score=48.20 Aligned_cols=90 Identities=20% Similarity=0.212 Sum_probs=59.1
Q ss_pred hhhHHHHHHHHHHHHCCCceeecccccChhHHHHHhcc-ccCCCCcEEeeCCcccchHHHHHh----hHHHHHHHHHHhh
Q psy18006 59 PLNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQ-KMEFIPAVHIGNPKTLEFQIARTT----LVPGLLKTLAANK 133 (180)
Q Consensus 59 ~~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~~-~~~~~~~v~l~NPis~e~~~lR~s----LlpsLL~~l~~N~ 133 (180)
..+++.+.+++.|...||+|+.+-.|.+.+. ++.-+. +.-.++..++......+ =+||++ +. .++.......
T Consensus 49 v~~~I~~~i~~~~~~~G~~ei~~P~l~~~el-~~~sg~~~~~~~emf~~~dr~~~~-l~LrPT~Ee~~t-~~~~~~i~sy 125 (568)
T TIGR00409 49 VLKKVENIVREEMNKDGAIEVLLPALQPAEL-WQESGRWDTYGPELLRLKDRKGRE-FVLGPTHEEVIT-DLARNEIKSY 125 (568)
T ss_pred HHHHHHHHHHHHHHHcCCEEEECCccchHHH-HhhcCCCCccchhcEEEecCCCCE-EEEcCCCcHHHH-HHHHHHHhhc
Confidence 4556788899999999999999999999664 443221 11123467776654444 378886 33 3333221211
Q ss_pred CCCCCcceEeecceEecCC
Q psy18006 134 KMPLPLKLFEISDIVYKDA 152 (180)
Q Consensus 134 ~~~~~~~iFEiG~V~~~~~ 152 (180)
+..|+++|.+|++|+.+.
T Consensus 126 -r~LPlrlyqi~~~fR~E~ 143 (568)
T TIGR00409 126 -KQLPLNLYQIQTKFRDEI 143 (568)
T ss_pred -cccCeEEEEeeCEeeCCC
Confidence 357999999999998664
No 51
>PLN02788 phenylalanine-tRNA synthetase
Probab=94.14 E-value=0.29 Score=44.08 Aligned_cols=102 Identities=13% Similarity=0.138 Sum_probs=75.5
Q ss_pred cCCCCCCCCCc----ccccCCChhhHHHHHHHHHHHHC---CCceeec-ccccChhHHHHHhccccC-----CCCcEEee
Q psy18006 41 YNNIPKTMPRF----ASIARQVPLNKLSDQLRGDIAQA---GFTEVLT-FALCSRDDVSVKLRQKME-----FIPAVHIG 107 (180)
Q Consensus 41 yd~i~~~~p~~----~~~~~~~~~~~~~~~ir~~L~~~---Gf~Ev~t-ysl~s~~~~~~~~~~~~~-----~~~~v~l~ 107 (180)
+.|+|+..-.. ...+..+|...+.+.|++++.++ ||.+.-. ....+....++.++++.+ ..+..-|
T Consensus 47 ~~n~~~~i~~~~~~~l~~~~~HPl~~~~~~i~~~f~~~~~~gf~~~~~~~~iv~~~~NFD~L~~P~dHPaR~~~DTfy~- 125 (402)
T PLN02788 47 TNNVPDHIFSKIGMQLHRRPDHPLGILKNAIYDYFDENYSNKFKKFDDLSPIVSTKQNFDDVLVPPDHVSRSYNDTYYV- 125 (402)
T ss_pred cCCCChhHhccCCccCCCCCCChHHHHHHHHHHHHhhcccCCcEEecCCCCccchhhhhhhhCCCCCCCccCccceEEe-
Confidence 67887753322 23456789999999999999998 8988765 667777666777776532 1234445
Q ss_pred CCcccchHHHHHhhHHHHHHHHHHhhCCCCCcceEeecceEecCC
Q psy18006 108 NPKTLEFQIARTTLVPGLLKTLAANKKMPLPLKLFEISDIVYKDA 152 (180)
Q Consensus 108 NPis~e~~~lR~sLlpsLL~~l~~N~~~~~~~~iFEiG~V~~~~~ 152 (180)
| +..+||++--+...++++.+. -++|=+|+||+.++
T Consensus 126 ~----~~~lLRTHTSa~q~~~l~~~~-----~~~~~~g~VyRrD~ 161 (402)
T PLN02788 126 D----AQTVLRCHTSAHQAELLRAGH-----THFLVTGDVYRRDS 161 (402)
T ss_pred c----CCccccCCCcHHHHHHHHhCC-----CcEEEEeeEeecCC
Confidence 2 467999999999999998532 28999999999886
No 52
>PLN02908 threonyl-tRNA synthetase
Probab=93.83 E-value=0.086 Score=50.36 Aligned_cols=93 Identities=18% Similarity=0.176 Sum_probs=66.7
Q ss_pred hhhHHHHHHHHHHHHCCCceeecccccChhHHHHHhccccCC-CCcEEeeCCcccchHHHHHhhHHHHHHHHHHhhC-C-
Q psy18006 59 PLNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEF-IPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKK-M- 135 (180)
Q Consensus 59 ~~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~~~~~~-~~~v~l~NPis~e~~~lR~sLlpsLL~~l~~N~~-~- 135 (180)
-...+.+.+++.+...||+||.|-.+.+.+. ++.-|..... ++...+ -+..+.-+||++.-|++....+...+ .
T Consensus 323 i~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l-~~~sGh~~~~~~~mf~~--~~~~~~~~Lrp~~~~~~~~~~~~~~~s~r 399 (686)
T PLN02908 323 IYNKLMDFIREQYWERGYDEVITPNIYNMDL-WETSGHAAHYKENMFVF--EIEKQEFGLKPMNCPGHCLMFAHRVRSYR 399 (686)
T ss_pred HHHHHHHHHHHHHHHcCCEEEECCccccHHH-HhhcCCccccchhccEE--ecCCeeEEEcCCCcHHHHHHHhccccChh
Confidence 3446788889999999999999999999986 4433322111 222333 23446668999999999887766544 2
Q ss_pred CCCcceEeecceEecCCCc
Q psy18006 136 PLPLKLFEISDIVYKDATA 154 (180)
Q Consensus 136 ~~~~~iFEiG~V~~~~~~~ 154 (180)
..|++++++|.+|+.+...
T Consensus 400 ~LPlr~~~~g~~fR~E~~~ 418 (686)
T PLN02908 400 ELPLRLADFGVLHRNELSG 418 (686)
T ss_pred hCCHhHEEeeccccCCCCc
Confidence 5799999999999876543
No 53
>cd00778 ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from archaea, the cytoplasm of eukaryotes and some bacteria.
Probab=92.93 E-value=0.14 Score=42.98 Aligned_cols=122 Identities=11% Similarity=0.072 Sum_probs=73.5
Q ss_pred hhhhHhhhccCCCCCCCCCcc--cccCCChhhHHHHHHHHHHHHCCCceeecccccChhHHHHHhccccC-CCCcEEeeC
Q psy18006 32 YEDIAIAYGYNNIPKTMPRFA--SIARQVPLNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKME-FIPAVHIGN 108 (180)
Q Consensus 32 iEEIaR~~Gyd~i~~~~p~~~--~~~~~~~~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~~~~~-~~~~v~l~N 108 (180)
-.|+++-.|.-.+. .++... .+.+..-...+.+.+++.+...||+|+.+-.+.+.+.....-+.... .++..++.+
T Consensus 6 ~~~l~~~~~~~d~~-~~~G~~~~lP~g~~l~~~l~~~~~~~~~~~G~~ev~~P~l~~~~~~~~~sg~~~~f~~~~f~~~~ 84 (261)
T cd00778 6 YTEVITKAELIDYG-PVKGCMVFRPYGYAIWENIQKILDKEIKETGHENVYFPLLIPESELEKEKEHIEGFAPEVAWVTH 84 (261)
T ss_pred HHHHHHHhCCcccC-CCCCeEEEcccHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHhhhhhcchhhcCcceEEEEe
Confidence 45667776664442 112111 11122345567888899999999999999999998753222121111 134566654
Q ss_pred Ccc---cchHHHHHhhHHHHHHHHHHhhC--CCCCcceEeecceEecCCCc
Q psy18006 109 PKT---LEFQIARTTLVPGLLKTLAANKK--MPLPLKLFEISDIVYKDATA 154 (180)
Q Consensus 109 Pis---~e~~~lR~sLlpsLL~~l~~N~~--~~~~~~iFEiG~V~~~~~~~ 154 (180)
--. ++.-+||++-=+.+....+.... +..|++++++|.+|+.+...
T Consensus 85 ~~~~~~~~~~~L~Pt~e~~~~~~~~~~i~s~r~LPlr~~~~~~~fR~E~~~ 135 (261)
T cd00778 85 GGLEELEEPLALRPTSETAIYPMFSKWIRSYRDLPLKINQWVNVFRWETKT 135 (261)
T ss_pred cCCcccCCcEEEcCCCCHHHHHHHHhhccchhhcCHHHHhhhhhccCCCCC
Confidence 221 23457888855555555555433 35799999999999877643
No 54
>PRK12294 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=92.78 E-value=0.29 Score=41.75 Aligned_cols=101 Identities=11% Similarity=-0.048 Sum_probs=68.9
Q ss_pred hhhHHHHHHHHHHHHCCCceeecccccChhHHHHHhccccCCCCcEEeeCCcccchHHHHHhhHHHHHHHHHHhhCCCCC
Q psy18006 59 PLNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEFIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKKMPLP 138 (180)
Q Consensus 59 ~~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~~~~~~~~~v~l~NPis~e~~~lR~sLlpsLL~~l~~N~~~~~~ 138 (180)
.....++++++.....||.|+.|-.|-.-+.. . +.-........+.....+-+.-+||+-+.|++.+.++.+. ..+
T Consensus 9 ~~~~ie~~l~~~f~~~GY~~I~tP~~E~~d~~-~-~~~~~~~~~~~~~~~~~~Gr~laLRpD~T~~iAR~~a~~~--~~~ 84 (272)
T PRK12294 9 ALKESETAFLKYFNKADYELVDFSVIEKLDWK-Q-LNHEDLQQMGERSFWQHEHQIYALRNDFTDQLLRYYSMYP--TAA 84 (272)
T ss_pred HHHHHHHHHHHHHHHcCCeEeeCCcchhHHhh-h-ccccchhhhheeeeecCCCCEEEEcCCCCHHHHHHHHhcC--CCC
Confidence 34567888999999999999999988666542 1 1111111233454555677888999999999999887653 234
Q ss_pred cceEeecceEecCCCcceeeeecCC
Q psy18006 139 LKLFEISDIVYKDATAGTLMFTPGG 163 (180)
Q Consensus 139 ~~iFEiG~V~~~~~~~~~l~~~~~G 163 (180)
.|+|-+|+||+.+.+....++=+-|
T Consensus 85 ~Rl~Y~g~VfR~~~~~~Q~GvEliG 109 (272)
T PRK12294 85 TKVAYAGLIIRNNEAAVQVGIENYA 109 (272)
T ss_pred ceEEEeccEeccCCCcceeceEEEC
Confidence 6999999999876543333333334
No 55
>PLN02972 Histidyl-tRNA synthetase
Probab=92.31 E-value=0.32 Score=47.16 Aligned_cols=87 Identities=16% Similarity=0.122 Sum_probs=65.2
Q ss_pred hhHHHHHHHHHHHHCCCceeecccccChhHHHHHhccccCCCCcEEeeCCcccchHHHHHhhHHHHHHHHHHhhCCCCCc
Q psy18006 60 LNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEFIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKKMPLPL 139 (180)
Q Consensus 60 ~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~~~~~~~~~v~l~NPis~e~~~lR~sLlpsLL~~l~~N~~~~~~~ 139 (180)
.+...+.+++++...||.|+.|-.|-..+.+....+ .+....+++..+-. +.-+||+-+.+++.+.++.|.. .++
T Consensus 344 re~I~~~L~~vFk~hGy~eI~TPvfE~~Ell~~k~G--ed~k~mY~f~D~gG-r~LaLRPDlTvPiAR~vA~n~~--~p~ 418 (763)
T PLN02972 344 REKAFSIITSVFKRHGATALDTPVFELRETLMGKYG--EDSKLIYDLADQGG-ELCSLRYDLTVPFARYVAMNGI--TSF 418 (763)
T ss_pred HHHHHHHHHHHHHHcCCEEccCCcccchHHhhcccC--cchhheEEEECCCC-CEEEeCCCChHHHHHHHHhCCC--Ccc
Confidence 445677888889999999999999977664322222 12234677877643 4568999999999999998853 378
Q ss_pred ceEeecceEecC
Q psy18006 140 KLFEISDIVYKD 151 (180)
Q Consensus 140 ~iFEiG~V~~~~ 151 (180)
|.|.+|+||+.+
T Consensus 419 KrYyiG~VFR~e 430 (763)
T PLN02972 419 KRYQIAKVYRRD 430 (763)
T ss_pred eEEEeccEEecC
Confidence 999999999754
No 56
>cd00774 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-like class II core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP binding and hydrolysis. This alignment contains only sequences from the GlyRS form which homodimerizes. The heterotetramer glyQ is in a different family of class II aaRS. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the N-terminus of the accessory subunit of mitochondrial polymerase gamma (Pol gamma b). Pol gamma b stimulates processive DNA synthesis and is functional as a homodimer, which can associate with the catalytic subunit Pol gamma alpha to form a heterotrimer. Despite significant both structural and sequence similarity with Gly
Probab=90.46 E-value=0.32 Score=40.72 Aligned_cols=83 Identities=10% Similarity=0.016 Sum_probs=57.6
Q ss_pred hhhHHHHHHHHHHHHCC--CceeecccccChhHHHHHhccccCCCCcEEeeCCcccchHHHHHhhHHHHHHHHHHhhC--
Q psy18006 59 PLNKLSDQLRGDIAQAG--FTEVLTFALCSRDDVSVKLRQKMEFIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKK-- 134 (180)
Q Consensus 59 ~~~~~~~~ir~~L~~~G--f~Ev~tysl~s~~~~~~~~~~~~~~~~~v~l~NPis~e~~~lR~sLlpsLL~~l~~N~~-- 134 (180)
-.+.+.+.+++.+...| |+|+.|-.+.+.+. +. +.....+. ..+.-+||+...|+.+-.+++...
T Consensus 34 l~~~i~~~~~~~~~~~g~~~~~i~tP~i~~~~m-f~-~~~g~~d~---------~~~~~~Lrp~~~~~~~~~~~~~~~~~ 102 (254)
T cd00774 34 LKNNIKSAWRKSFVLEEEDMLEIDSPIITPELM-FK-TSIGPVES---------GGNLGYLRPETAQGIFVNFKNLLEFN 102 (254)
T ss_pred HHHHHHHHHHHHHHhcCCCeEEEeccccCCHHH-he-eeecccCC---------CCcccccCCcccchHHHHHHHHHHHh
Confidence 45567888899998885 99999999999953 22 11110000 123568999999877665555422
Q ss_pred -CCCCcceEeecceEecCC
Q psy18006 135 -MPLPLKLFEISDIVYKDA 152 (180)
Q Consensus 135 -~~~~~~iFEiG~V~~~~~ 152 (180)
+..|+++++||++|+.+.
T Consensus 103 ~~~lP~~~~qig~~fR~E~ 121 (254)
T cd00774 103 RRKLPFGVAQIGKSFRNEI 121 (254)
T ss_pred CCCCCchhhhhchhhcccc
Confidence 367999999999998764
No 57
>COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=90.27 E-value=0.68 Score=42.09 Aligned_cols=92 Identities=17% Similarity=0.189 Sum_probs=67.7
Q ss_pred hhhHHHHHHHHHHHHCCCceeecccccChhHHHHHhccccC--CCCcEEeeCCcccchHHHHHhhHHHHHHHHHHhhC-C
Q psy18006 59 PLNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKME--FIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKK-M 135 (180)
Q Consensus 59 ~~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~~~~~--~~~~v~l~NPis~e~~~lR~sLlpsLL~~l~~N~~-~ 135 (180)
..+.+.+.+++++...||.|+-|-.|-..+.+....|-..+ .++......- +...=.||+-+.+++...+..|.. .
T Consensus 20 ~~~~i~~~~~~v~~~yGf~eI~TPifE~telf~r~~Ge~td~v~kemY~F~Dk-ggr~laLRpe~Tapv~R~~~en~~~~ 98 (429)
T COG0124 20 LREYIESTIRKVFESYGFSEIRTPIFEYTELFARKSGEETDVVEKEMYTFKDK-GGRSLALRPELTAPVARAVAENKLDL 98 (429)
T ss_pred HHHHHHHHHHHHHHHcCCEeccCccccchhHhhhccCCcccccccceEEEEeC-CCCEEEecccCcHHHHHHHHhccccc
Confidence 34567888999999999999999999888753222221100 1233444444 555668999999999999999965 4
Q ss_pred CCCcceEeecceEecC
Q psy18006 136 PLPLKLFEISDIVYKD 151 (180)
Q Consensus 136 ~~~~~iFEiG~V~~~~ 151 (180)
+.|+|+|=+|+||+-+
T Consensus 99 ~~p~k~yy~g~vfRyE 114 (429)
T COG0124 99 PKPLKLYYFGPVFRYE 114 (429)
T ss_pred cCCeeEEEecceecCC
Confidence 6799999999999754
No 58
>TIGR00408 proS_fam_I prolyl-tRNA synthetase, family I. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent families. This family includes the archaeal enzyme, the Pro-specific domain of a human multifunctional tRNA ligase, and the enzyme from the spirochete Borrelia burgdorferi. The other family includes enzymes from Escherichia coli, Bacillus subtilis, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae.
Probab=89.19 E-value=0.6 Score=42.75 Aligned_cols=95 Identities=18% Similarity=0.105 Sum_probs=66.1
Q ss_pred hhhHHHHHHHHHHHHCCCceeecccccChhHHHHHhc--cccCCCCcEEeeCCcc---cchHHHHHhhHHHHHHHHHHhh
Q psy18006 59 PLNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLR--QKMEFIPAVHIGNPKT---LEFQIARTTLVPGLLKTLAANK 133 (180)
Q Consensus 59 ~~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~--~~~~~~~~v~l~NPis---~e~~~lR~sLlpsLL~~l~~N~ 133 (180)
-...+.+.+++.+...||+|+.+-.|.+.+.. ++-+ ++.-.++...|..--. .+.-+||++.-|.+....+...
T Consensus 40 i~~~I~~~i~~~~~~~G~~ev~~P~l~~~~~~-~~~~~h~~~f~~e~f~v~~~g~~~~~e~l~LrPt~e~~i~~~~~~~i 118 (472)
T TIGR00408 40 IWKNIQKILRNILDEIGHEEVYFPMLIPESEL-AKEKDHIKGFEPEVYWITHGGLSKLDEPLALRPTSETAMYPMFKKWV 118 (472)
T ss_pred HHHHHHHHHHHHHHHcCCEEEECCccCCHHHH-HhhcchhhhcchhcEEEecCCCCccCCcEEEeCCCcHHHHHHHhccc
Confidence 34567777899999999999999999998864 3211 1100123455544221 2344899999999998877764
Q ss_pred C--CCCCcceEeecceEecCCCc
Q psy18006 134 K--MPLPLKLFEISDIVYKDATA 154 (180)
Q Consensus 134 ~--~~~~~~iFEiG~V~~~~~~~ 154 (180)
+ +..|++++++|+||+.+...
T Consensus 119 ~S~rdLPlr~~q~~~vfR~E~~~ 141 (472)
T TIGR00408 119 KSYTDLPLKINQWVNVFRYETKH 141 (472)
T ss_pred cChhhcCHHHhheeeeecCCCCC
Confidence 4 35799999999999876643
No 59
>PRK08661 prolyl-tRNA synthetase; Provisional
Probab=89.07 E-value=0.61 Score=42.74 Aligned_cols=95 Identities=12% Similarity=-0.004 Sum_probs=63.5
Q ss_pred hhhHHHHHHHHHHHHCCCceeecccccChhHHHHHhccccC-CCCcEEeeCCc---ccchHHHHHhhHHHHHHHHHHhhC
Q psy18006 59 PLNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKME-FIPAVHIGNPK---TLEFQIARTTLVPGLLKTLAANKK 134 (180)
Q Consensus 59 ~~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~~~~~-~~~~v~l~NPi---s~e~~~lR~sLlpsLL~~l~~N~~ 134 (180)
-...+.+.+++.+...||+|+.+-.|.+.+.....-+.... .++...+..-- ..+.-+||++-=+++....+.-.+
T Consensus 46 i~~~i~~~~~~~~~~~G~~ev~~P~l~~~~~~~~~~~h~~~f~~e~~~v~~~~~~~~~e~l~LrPtsE~~i~~~~~~~i~ 125 (477)
T PRK08661 46 IWENIQKILDKLFKETGHENVYFPLLIPESLLEKEKEHVEGFAPEVAWVTHGGGEKLEEKLALRPTSETIIYPMYKKWIQ 125 (477)
T ss_pred HHHHHHHHHHHHHHHcCCEEEECCccCCHHHHhhhcCchhhcccccEEEEccCCCccCceEEEecCCcHHHHHHHHhhhc
Confidence 44567788899999999999999999998863221111100 12344453311 134567999987777766665543
Q ss_pred --CCCCcceEeecceEecCCC
Q psy18006 135 --MPLPLKLFEISDIVYKDAT 153 (180)
Q Consensus 135 --~~~~~~iFEiG~V~~~~~~ 153 (180)
+..|++++++|+||+.+..
T Consensus 126 SyrdLPlrl~q~~~vfR~E~~ 146 (477)
T PRK08661 126 SYRDLPLLYNQWVNVVRWETK 146 (477)
T ss_pred chhhcCHHHhcccceeeCCCC
Confidence 3579999999999987765
No 60
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=86.63 E-value=1.2 Score=40.30 Aligned_cols=88 Identities=14% Similarity=0.020 Sum_probs=56.3
Q ss_pred hhHHHHHHHHHHHHCCCceeecccccChhHHHHHhccccC-CCCcEEeeCCcccchHHHHHhhHHHHHHHHHHhhC--CC
Q psy18006 60 LNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKME-FIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKK--MP 136 (180)
Q Consensus 60 ~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~~~~~-~~~~v~l~NPis~e~~~lR~sLlpsLL~~l~~N~~--~~ 136 (180)
...+.+-+.+.+...||+|+.+-.+++.+. .+.-+.... .++..+|.+ +.-+||++==..+....+.... +.
T Consensus 176 ~~aL~~~~~~~~~~~G~~~v~~P~lv~~~~-~~~~G~~~~f~~~~y~i~~----~~~~L~pTsE~~~~~~~~~~i~s~~~ 250 (418)
T TIGR00414 176 ERALINFMLDLLEKNGYQEIYPPYLVNEES-LDGTGQLPKFEEDIFKLED----TDLYLIPTAEVPLTNLHRNEILEEEE 250 (418)
T ss_pred HHHHHHHHHHHHHHcCCEEEeCCccccHHH-HhhcCccccccccceEecC----CCEEEEeCCcHHHHHHHhCcCCChHh
Confidence 445666778888899999999999999986 444443221 134455643 2236776643444433332222 24
Q ss_pred CCcceEeecceEecCC
Q psy18006 137 LPLKLFEISDIVYKDA 152 (180)
Q Consensus 137 ~~~~iFEiG~V~~~~~ 152 (180)
.|+++|++|.+|+...
T Consensus 251 LPlr~~~~s~~FR~E~ 266 (418)
T TIGR00414 251 LPIKYTAHSPCFRSEA 266 (418)
T ss_pred CCeeEEEEcccccCCC
Confidence 6999999999997653
No 61
>PLN02837 threonine-tRNA ligase
Probab=86.38 E-value=0.84 Score=43.17 Aligned_cols=92 Identities=11% Similarity=0.008 Sum_probs=58.4
Q ss_pred hhHHHHHHHHHHHHCCCceeecccccChhHHHHHhccccC-CCCcEEeeCCcccchHHHHHhhHHHHHHHHHHhhC--CC
Q psy18006 60 LNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKME-FIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKK--MP 136 (180)
Q Consensus 60 ~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~~~~~-~~~~v~l~NPis~e~~~lR~sLlpsLL~~l~~N~~--~~ 136 (180)
...+.+-+++.+...||+||.|-.+.+.+. ++.-|.... .++..++.+ +..+.=++|++=-|......+.-.+ +.
T Consensus 250 ~~~L~~~~~~~~~~~G~~~v~tP~l~~~~l-~~~sGh~~~~~~~mf~~~~-~~~~~y~l~p~~~p~~~~~~~~~~~Syrd 327 (614)
T PLN02837 250 RHIIEDSWKKMHFEHGYDLLYTPHVAKADL-WKTSGHLDFYKENMYDQMD-IEDELYQLRPMNCPYHILVYKRKLHSYRD 327 (614)
T ss_pred HHHHHHHHHHHHHHCCCEEEECCccCCHHH-HhhcCCcccchhhcccccC-CCCceEEECCCCcHHHHHHHhCccCChhH
Confidence 445677788888889999999999999986 444442211 122233321 1233336777777765444332222 25
Q ss_pred CCcceEeecceEecCCC
Q psy18006 137 LPLKLFEISDIVYKDAT 153 (180)
Q Consensus 137 ~~~~iFEiG~V~~~~~~ 153 (180)
.|++++|+|++|+....
T Consensus 328 LPlr~~~~~~~~R~E~~ 344 (614)
T PLN02837 328 LPIRVAELGTVYRYELS 344 (614)
T ss_pred CCHhhEeecccccCCCC
Confidence 69999999999987654
No 62
>cd00669 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase class II core domain. This domain is the core catalytic domain of class II aminoacyl-tRNA synthetases of the subgroup containing aspartyl, lysyl, and asparaginyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. Nearly all class II tRNA synthetases are dimers and enzymes in this subgroup are homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=86.25 E-value=1.8 Score=36.80 Aligned_cols=79 Identities=15% Similarity=0.017 Sum_probs=48.4
Q ss_pred hHHHHHHHHHHHHCCCceeecccccChhHHHHHhccccCCCCcEEeeCCcccchHHHHHhhHHHHHHHHHHhhCCCCCcc
Q psy18006 61 NKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEFIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKKMPLPLK 140 (180)
Q Consensus 61 ~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~~~~~~~~~v~l~NPis~e~~~lR~sLlpsLL~~l~~N~~~~~~~~ 140 (180)
....+.+|+++...||.||-|-.+++... + ...+..++..........||+|---.+-..++.+. -+
T Consensus 5 s~i~~~ir~~f~~~gf~ev~tP~l~~~~~--~------~~~~~f~~~~~~~g~~~~L~~Spql~~~~~~~~~~-----~~ 71 (269)
T cd00669 5 SKIIKAIRDFMDDRGFLEVETPMLQKITG--G------AGARPFLVKYNALGLDYYLRISPQLFKKRLMVGGL-----DR 71 (269)
T ss_pred HHHHHHHHHHHHHCCCEEEECCEEeccCC--c------cccceEEeeecCCCCcEEeecCHHHHHHHHHhcCC-----Cc
Confidence 35678899999999999999999885421 1 01122334211123445677554433333333332 38
Q ss_pred eEeecceEecCC
Q psy18006 141 LFEISDIVYKDA 152 (180)
Q Consensus 141 iFEiG~V~~~~~ 152 (180)
+|+||+||+.++
T Consensus 72 vf~i~~~fR~e~ 83 (269)
T cd00669 72 VFEINRNFRNED 83 (269)
T ss_pred EEEEecceeCCC
Confidence 999999998764
No 63
>PRK03991 threonyl-tRNA synthetase; Validated
Probab=84.32 E-value=1.5 Score=41.60 Aligned_cols=91 Identities=15% Similarity=0.086 Sum_probs=60.9
Q ss_pred hhHHHHHHHHHHHHCCCceeecccccChhHHHHHhccccC-CCCcEEeeCCcccchHHHHHhhHHHHHHHHHHhhC--CC
Q psy18006 60 LNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKME-FIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKK--MP 136 (180)
Q Consensus 60 ~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~~~~~-~~~~v~l~NPis~e~~~lR~sLlpsLL~~l~~N~~--~~ 136 (180)
...+.+.+++.+...||+||.|-.+.+.+. .+..+.... .++...+.. ..+.-+||++=-|++....+.... +.
T Consensus 230 ~~~L~~~~~~~~~~~G~~~V~tP~~~~~~~-~~~sgh~~~f~e~my~v~~--~~e~l~Lrp~~c~~~~~~~~~~~~Syrd 306 (613)
T PRK03991 230 RDLLEDYVYNLVVELGAMPVETPIMYDLSH-PAIREHADKFGERQYRVKS--DKKDLMLRFAACFGQFLMLKDMTISYKN 306 (613)
T ss_pred HHHHHHHHHHHHHHCCCEEEECCeecChhH-HhhcccccccchhceEecC--CCceEEEecCCCHHHHHHHhCCcCchhh
Confidence 445777789999999999999998887754 232221111 123344432 134457888888888666554443 35
Q ss_pred CCcceEeecc-eEecCCC
Q psy18006 137 LPLKLFEISD-IVYKDAT 153 (180)
Q Consensus 137 ~~~~iFEiG~-V~~~~~~ 153 (180)
.|++++|+|+ +|+....
T Consensus 307 LPlr~~e~~~~~fR~E~~ 324 (613)
T PRK03991 307 LPLKMYELSTYSFRLEQR 324 (613)
T ss_pred CChhhheecchheeCCCC
Confidence 7999999999 9987654
No 64
>TIGR00469 pheS_mito phenylalanyl-tRNA synthetase, mitochondrial. Unlike all other known phenylalanyl-tRNA synthetases, the mitochondrial form demonstrated from yeast is monomeric. It is similar to but longer than the alpha subunit (PheS) of the alpha 2 beta 2 form found in Bacteria, Archaea, and eukaryotes, and shares the characteristic motifs of class II aminoacyl-tRNA ligases. This alignment models the experimental example from Saccharomyces cerevisiae (designated MSF1) and its orthologs from other eukaryotic species.
Probab=83.51 E-value=3.2 Score=38.15 Aligned_cols=94 Identities=16% Similarity=0.164 Sum_probs=67.4
Q ss_pred ccCCChhhHHHHHHHHHHHHC--------CCceeecc-cccChhHHHHHhccccCC-----CCcEEeeCCcccchHHHHH
Q psy18006 54 IARQVPLNKLSDQLRGDIAQA--------GFTEVLTF-ALCSRDDVSVKLRQKMEF-----IPAVHIGNPKTLEFQIART 119 (180)
Q Consensus 54 ~~~~~~~~~~~~~ir~~L~~~--------Gf~Ev~ty-sl~s~~~~~~~~~~~~~~-----~~~v~l~NPis~e~~~lR~ 119 (180)
.+..+|.....+.|.+++.+. ||.=+-.+ ..++....++.++++.+- .+..-| | +..+||+
T Consensus 38 ~~~~HPl~~~~~~I~~~F~~~~~~~~~~~gf~v~~~~~Pvvt~~~NFD~Ln~P~dHPaR~~~DT~Yi-~----~~~lLRT 112 (460)
T TIGR00469 38 LKEDHPLGIIRDLIEKKFNGADNNQRGNPLFKIFDNFKPVVTTMENFDNLGFPADHPGRQKSDCYYI-N----EQHLLRA 112 (460)
T ss_pred CCCCCcHHHHHHHHHHHHHhhhcccccCCCeEEeeCCCCccchhhhhhhcCCCCCCcccCcccceEe-c----CCceeCC
Confidence 456788889999999999988 76333221 356666667777775421 233444 2 5679999
Q ss_pred hhHHHHHHHHHHhhCCCCCcc--eEeecceEecCC
Q psy18006 120 TLVPGLLKTLAANKKMPLPLK--LFEISDIVYKDA 152 (180)
Q Consensus 120 sLlpsLL~~l~~N~~~~~~~~--iFEiG~V~~~~~ 152 (180)
+--+...++++.+...+.|++ +.=.|+||+.+.
T Consensus 113 HTSa~q~~~~~~~~~~~~~~~~~~i~~G~VYRrD~ 147 (460)
T TIGR00469 113 HTSAHELECFQGGLDDSDNIKSGFLISADVYRRDE 147 (460)
T ss_pred CCcHHHHHHHHhccccCCCcceeeEeecceeeCCC
Confidence 999999999987654334555 999999999886
No 65
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=82.52 E-value=2.2 Score=38.59 Aligned_cols=88 Identities=18% Similarity=0.059 Sum_probs=55.7
Q ss_pred hhHHHHHHHHHHH-HCCCceeecccccChhHHHHHhccccC-CCCcEEeeCCcccchHHHHHhhHHHHHHHHHHhhC-C-
Q psy18006 60 LNKLSDQLRGDIA-QAGFTEVLTFALCSRDDVSVKLRQKME-FIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKK-M- 135 (180)
Q Consensus 60 ~~~~~~~ir~~L~-~~Gf~Ev~tysl~s~~~~~~~~~~~~~-~~~~v~l~NPis~e~~~lR~sLlpsLL~~l~~N~~-~- 135 (180)
.+.+.+.+.+.+. ..||+|+.+-.|++.+.. +.-+.... .++..+|.+ +.-+|+++-=+.+....+.... .
T Consensus 173 ~~aL~~~~~~~~~~~~G~~ev~~P~lv~~~~~-~~~G~~~~f~~~ly~i~~----~~~~L~pTsE~~l~~l~~~~~~s~~ 247 (425)
T PRK05431 173 ERALIQFMLDLHTEEHGYTEVIPPYLVNEESM-YGTGQLPKFEEDLYKIED----DDLYLIPTAEVPLTNLHRDEILDEE 247 (425)
T ss_pred HHHHHHHHHHHHHHhcCCEEEeccccccHHHH-hhcCccccchhhceEecC----CCEEEEeCCcHHHHHHHhcccCCHH
Confidence 3345666677777 899999999999999864 43343221 123455643 2335666554555444333322 2
Q ss_pred CCCcceEeecceEecCC
Q psy18006 136 PLPLKLFEISDIVYKDA 152 (180)
Q Consensus 136 ~~~~~iFEiG~V~~~~~ 152 (180)
..|++++++|.+|+...
T Consensus 248 dLPlr~~~~s~~fR~Ea 264 (425)
T PRK05431 248 ELPLKYTAYSPCFRSEA 264 (425)
T ss_pred hCCeeEEEEcCEecCCC
Confidence 46999999999997654
No 66
>PF00152 tRNA-synt_2: tRNA synthetases class II (D, K and N) ; InterPro: IPR004364 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry includes the asparagine, aspartic acid and lysine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1N9W_B 1BBU_A 1BBW_A 4EX5_B 3E9I_A 3E9H_C 3A74_C 1NNH_A 3M4P_C 3M4Q_B ....
Probab=81.67 E-value=2.1 Score=37.01 Aligned_cols=79 Identities=20% Similarity=0.103 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHCCCceeecccccChhHHHHHhccccCCCCcEEee---CCcccchHHHHHhhHHHHHHHHHHhhCCCCC
Q psy18006 62 KLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEFIPAVHIG---NPKTLEFQIARTTLVPGLLKTLAANKKMPLP 138 (180)
Q Consensus 62 ~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~~~~~~~~~v~l~---NPis~e~~~lR~sLlpsLL~~l~~N~~~~~~ 138 (180)
.+.+.+|++|...||.||-|-.+++... + ...+...+. +.....-.+|++|----+=..++...
T Consensus 27 ~i~~~ir~ff~~~~f~Ev~tP~l~~~~~--~------~~~~~F~v~~~~~~~~~~~~~L~~Spql~~k~ll~~g~----- 93 (335)
T PF00152_consen 27 AILQAIREFFDKRGFIEVDTPILTSSTC--E------GGAEPFSVDSEPGKYFGEPAYLTQSPQLYLKRLLAAGL----- 93 (335)
T ss_dssp HHHHHHHHHHHHTT-EEE---SEESSSS--S------SSSCSEEEEESTTEETTEEEEE-SSSHHHHHHHHHTTH-----
T ss_pred HHHHHHHHHHHhCCceEEcCceeecccc--C------ccccccccccchhhhcccceecCcChHHHHhhhccccc-----
Confidence 5678899999999999999998887753 1 113345555 33333445677776554444444332
Q ss_pred cceEeecceEecCCC
Q psy18006 139 LKLFEISDIVYKDAT 153 (180)
Q Consensus 139 ~~iFEiG~V~~~~~~ 153 (180)
-++||||++|+.++.
T Consensus 94 ~~vf~i~~~FR~E~~ 108 (335)
T PF00152_consen 94 ERVFEIGPCFRNEES 108 (335)
T ss_dssp SEEEEEEEEE-BSSS
T ss_pred hhhhheecceeccCc
Confidence 569999999987764
No 67
>PRK09350 poxB regulator PoxA; Provisional
Probab=79.98 E-value=4.2 Score=35.07 Aligned_cols=26 Identities=31% Similarity=0.294 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHHHCCCceeecccccC
Q psy18006 61 NKLSDQLRGDIAQAGFTEVLTFALCS 86 (180)
Q Consensus 61 ~~~~~~ir~~L~~~Gf~Ev~tysl~s 86 (180)
....+.+|+++...||.||.|-.|..
T Consensus 9 ~~i~~~ir~~f~~~gf~EV~TP~l~~ 34 (306)
T PRK09350 9 AKIIAEIRRFFADRGVLEVETPILSQ 34 (306)
T ss_pred HHHHHHHHHHHHHCCCEEEECCeEec
Confidence 45788899999999999999998864
No 68
>KOG0556|consensus
Probab=78.27 E-value=6 Score=36.10 Aligned_cols=77 Identities=17% Similarity=0.160 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHCCCceeecccccChhHHHHHhccccCCCCcEEeeCCcccchHHHHHhhHHHHHHHHHHhhCCCCCcceE
Q psy18006 63 LSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEFIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKKMPLPLKLF 142 (180)
Q Consensus 63 ~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~~~~~~~~~v~l~NPis~e~~~lR~sLlpsLL~~l~~N~~~~~~~~iF 142 (180)
.-...|++|...||.|+.|--+++... + .+....+|.=-.. -.+|-+| |.|.+...-= ..--|+|
T Consensus 234 vc~~FRe~L~~kgF~EIhTpKli~asS--E------GGanvF~v~Yfk~--~A~LAQS--PQLyKQMaI~---gdf~rVy 298 (533)
T KOG0556|consen 234 VCFAFREYLRSKGFVEIHTPKLIGASS--E------GGANVFRVSYFKQ--KAYLAQS--PQLYKQMAIC---GDFERVY 298 (533)
T ss_pred HHHHHHHHHHhcCcceecccccccccC--C------CCceeEEEEeccC--cchhhcC--hHHHHHHHHh---cchhhee
Confidence 455679999999999999988887653 1 1123344443222 2355444 5665554332 2236799
Q ss_pred eecceEecCCCc
Q psy18006 143 EISDIVYKDATA 154 (180)
Q Consensus 143 EiG~V~~~~~~~ 154 (180)
|||.||.-.++.
T Consensus 299 eIGpVfRAEdSn 310 (533)
T KOG0556|consen 299 EIGPVFRAEDSN 310 (533)
T ss_pred eecceeeccccc
Confidence 999999877653
No 69
>TIGR00462 genX lysyl-tRNA synthetase-like protein GenX. Many Gram-negative bacteria have a protein closely homologous to the C-terminal region of lysyl-tRNA synthetase (LysS). Multiple sequence alignment of these proteins with the homologous regions of collected LysS proteins shows that these proteins form a distinct set rather than just similar truncations of LysS. The protein is termed GenX after its designation in E. coli. Interestingly, genX often is located near a homolog of lysine-2,3-aminomutase. Its function is unknown.
Probab=77.77 E-value=7 Score=33.66 Aligned_cols=81 Identities=20% Similarity=0.161 Sum_probs=47.8
Q ss_pred hHHHHHHHHHHHHCCCceeecccccChhHHHHHhccccCCCCcEEee--CC-cccchHHHHHhhHHHHHHHHHHhhCCCC
Q psy18006 61 NKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEFIPAVHIG--NP-KTLEFQIARTTLVPGLLKTLAANKKMPL 137 (180)
Q Consensus 61 ~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~~~~~~~~~v~l~--NP-is~e~~~lR~sLlpsLL~~l~~N~~~~~ 137 (180)
..+.+.+|+++...||.||-|-.|.+..- .+. ..+..++. ++ -.....+||+|==-.+=..++..
T Consensus 5 s~i~~~ir~~f~~~gF~EV~TP~l~~~~~-~e~------~~~~F~~~y~~~~~~~~~~yL~~Spql~lk~ll~~g----- 72 (304)
T TIGR00462 5 ARLLAAIRAFFAERGVLEVETPLLSPAPV-TDP------HLDAFATEFLGPDGEGRPLYLQTSPEYAMKRLLAAG----- 72 (304)
T ss_pred HHHHHHHHHHHHHCCCEEEECCeEecCCC-CCc------CCcceeeeccCCCCCCcceeeecCHHHHHHHHHhcc-----
Confidence 45788899999999999999999986521 010 01122221 11 11234567766322222123221
Q ss_pred CcceEeecceEecCCC
Q psy18006 138 PLKLFEISDIVYKDAT 153 (180)
Q Consensus 138 ~~~iFEiG~V~~~~~~ 153 (180)
--++||||+||+.++.
T Consensus 73 ~~rVfeigp~FRaE~~ 88 (304)
T TIGR00462 73 SGPIFQICKVFRNGER 88 (304)
T ss_pred CCCEEEEcCceeCCCC
Confidence 2679999999987664
No 70
>PRK06462 asparagine synthetase A; Reviewed
Probab=77.46 E-value=4.1 Score=35.65 Aligned_cols=82 Identities=13% Similarity=0.005 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHCCCceeecccccChhHHHHHhccccCCCCcEEe-eCCcccchHHHHHhhHHHHHHHHHHhhCCCCCcc
Q psy18006 62 KLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEFIPAVHI-GNPKTLEFQIARTTLVPGLLKTLAANKKMPLPLK 140 (180)
Q Consensus 62 ~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~~~~~~~~~v~l-~NPis~e~~~lR~sLlpsLL~~l~~N~~~~~~~~ 140 (180)
...+.+|++|...||.||-|-.+++..+ .-++...+ .+..+ ....-....+|++|---- ++.+..- --+
T Consensus 35 ~i~~~iR~ff~~~~f~EV~TP~l~~~~~--~~~~~g~~--~~~~~~~~~~~~~~~yL~~Spql~-k~ll~~g-----~~r 104 (335)
T PRK06462 35 SILRYTREFLDGRGFVEVLPPIISPSTD--PLMGLGSD--LPVKQISIDFYGVEYYLADSMILH-KQLALRM-----LGK 104 (335)
T ss_pred HHHHHHHHHHHHCCCEEEeCCeEecCCC--CCCCcccc--CCccccccccCCCceeeccCHHHH-HHHHHhh-----cCc
Confidence 4678899999999999999998886532 11111000 01110 000112345677774322 4444322 257
Q ss_pred eEeecceEecCCC
Q psy18006 141 LFEISDIVYKDAT 153 (180)
Q Consensus 141 iFEiG~V~~~~~~ 153 (180)
+||||++|+.++.
T Consensus 105 VfeI~p~FR~E~~ 117 (335)
T PRK06462 105 IFYLSPNFRLEPV 117 (335)
T ss_pred EEEEeccccCCCC
Confidence 9999999986653
No 71
>PLN02850 aspartate-tRNA ligase
Probab=73.90 E-value=7.9 Score=36.17 Aligned_cols=77 Identities=12% Similarity=0.099 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHCCCceeecccccChhHHHHHhccccCCCCcEEeeCCcccchHHHHHhhHHHHHHHHHHhhCCCCCcce
Q psy18006 62 KLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEFIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKKMPLPLKL 141 (180)
Q Consensus 62 ~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~~~~~~~~~v~l~NPis~e~~~lR~sLlpsLL~~l~~N~~~~~~~~i 141 (180)
...+.+|++|...||.||-|-.+++..- +. .....++. ......+|++|----+=..+... --++
T Consensus 230 ~i~~~~R~fl~~~gF~EV~TP~L~~~~~--eg------ga~~F~v~--yf~~~~~L~qSpql~kq~li~~g-----~~rV 294 (530)
T PLN02850 230 QVCNLFREFLLSKGFVEIHTPKLIAGAS--EG------GSAVFRLD--YKGQPACLAQSPQLHKQMAICGD-----FRRV 294 (530)
T ss_pred HHHHHHHHHHHHCCcEEEeCCccccCCC--cc------ccceeeec--cCCcceecCCCHHHHHHHHHHhc-----CCce
Confidence 3567799999999999999998866532 10 11223332 12244567666432221122111 2579
Q ss_pred EeecceEecCCC
Q psy18006 142 FEISDIVYKDAT 153 (180)
Q Consensus 142 FEiG~V~~~~~~ 153 (180)
||||+||+.+++
T Consensus 295 feIgp~FRaE~s 306 (530)
T PLN02850 295 FEIGPVFRAEDS 306 (530)
T ss_pred EEEecccccCCC
Confidence 999999987763
No 72
>cd00775 LysRS_core Lys_tRNA synthetase (LysRS) class II core domain. Class II LysRS is a dimer which attaches a lysine to the 3' OH group of ribose of the appropriate tRNA. Its assignment to class II aaRS is based upon its structure and the presence of three characteristic sequence motifs in the core domain. It is found in eukaryotes as well as some prokaryotes and archaea. However, LysRS belongs to class I aaRS's in some prokaryotes and archaea. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=71.84 E-value=7.4 Score=33.91 Aligned_cols=79 Identities=18% Similarity=0.037 Sum_probs=46.8
Q ss_pred hHHHHHHHHHHHHCCCceeecccccChhHHHHHhccccCCCCcEEeeCCcccchHHHHHhhHHHHH-HHHHHhhCCCCCc
Q psy18006 61 NKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEFIPAVHIGNPKTLEFQIARTTLVPGLL-KTLAANKKMPLPL 139 (180)
Q Consensus 61 ~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~~~~~~~~~v~l~NPis~e~~~lR~sLlpsLL-~~l~~N~~~~~~~ 139 (180)
..+.+.+|++|.+.||.||-|-.+++... . - ......+..--.....+|++|- .|. +.+ .... --
T Consensus 12 s~i~~~iR~ff~~~gf~EV~TP~L~~~~~--~-~-----~~~~f~~~~~~~~~~~yL~~Sp--ql~~k~l---l~~g-~~ 77 (329)
T cd00775 12 SKIISYIRKFLDDRGFLEVETPMLQPIAG--G-A-----AARPFITHHNALDMDLYLRIAP--ELYLKRL---IVGG-FE 77 (329)
T ss_pred HHHHHHHHHHHHHCCCEEEECCccccCCC--C-c-----cceeEEeccCCCCcceeeccCH--HHHHHHH---HhcC-CC
Confidence 35688899999999999999998875532 1 0 0112222111223445676663 232 222 1111 26
Q ss_pred ceEeecceEecCCC
Q psy18006 140 KLFEISDIVYKDAT 153 (180)
Q Consensus 140 ~iFEiG~V~~~~~~ 153 (180)
++||||+||+.++.
T Consensus 78 ~vf~i~~~FR~E~~ 91 (329)
T cd00775 78 RVYEIGRNFRNEGI 91 (329)
T ss_pred cEEEEeccccCCCC
Confidence 79999999986653
No 73
>PLN02678 seryl-tRNA synthetase
Probab=70.17 E-value=5.8 Score=36.31 Aligned_cols=87 Identities=16% Similarity=0.057 Sum_probs=52.8
Q ss_pred hhhHHHHHHHHHHHHCCCceeecccccChhHHHHHhccccC-CCCcEEeeCCcccchHHHHHh---hHHHHHHHHHHhhC
Q psy18006 59 PLNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKME-FIPAVHIGNPKTLEFQIARTT---LVPGLLKTLAANKK 134 (180)
Q Consensus 59 ~~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~~~~~-~~~~v~l~NPis~e~~~lR~s---LlpsLL~~l~~N~~ 134 (180)
-...+.+.+.+.+...||+||.+-.+++.+.+ ..-|.... .++..+|.+. .+|.-.+.|+ |.|.. .|..
T Consensus 176 L~~AL~~y~ld~~~~~Gy~~V~~P~lv~~~~~-~~sG~~~~f~e~my~i~~~-~~~~yLi~TaE~~l~~~h-----~~~~ 248 (448)
T PLN02678 176 LNQALINFGLAFLRKRGYTPLQTPFFMRKDVM-AKCAQLAQFDEELYKVTGE-GDDKYLIATSEQPLCAYH-----RGDW 248 (448)
T ss_pred HHHHHHHHHHHHHHHcCCEEEECcccccHHHH-hhcCCcccchhcCceecCC-CCceeeecccccccChHH-----hccc
Confidence 34456777788888899999999999998864 43332211 1345566432 1232233322 33322 2322
Q ss_pred ---CCCCcceEeecceEecCC
Q psy18006 135 ---MPLPLKLFEISDIVYKDA 152 (180)
Q Consensus 135 ---~~~~~~iFEiG~V~~~~~ 152 (180)
+..|++++++|.+|+...
T Consensus 249 ~s~~eLPlr~~~~s~cfR~Ea 269 (448)
T PLN02678 249 IDPKELPIRYAGYSTCFRKEA 269 (448)
T ss_pred CCHHhCCceeEEecccccccc
Confidence 246999999999997654
No 74
>cd00776 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain. Assignment to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs in the core domain. This family includes AsnRS as well as a subgroup of AspRS. AsnRS and AspRS are homodimers, which attach either asparagine or aspartate to the 3'OH group of ribose of the appropriate tRNA. While archaea lack asnRS, they possess a non-discriminating aspRS, which can mischarge Asp-tRNA with Asn. Subsequently, a tRNA-dependent aspartate amidotransferase converts the bound aspartate to asparagine. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=69.71 E-value=12 Score=32.37 Aligned_cols=76 Identities=17% Similarity=0.112 Sum_probs=46.1
Q ss_pred hHHHHHHHHHHHHCCCceeecccccChhHHHHHhccccCCCCcEEeeCCcccchHHHHHhhHHHHHHHHHHhhCCCCCcc
Q psy18006 61 NKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEFIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKKMPLPLK 140 (180)
Q Consensus 61 ~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~~~~~~~~~v~l~NPis~e~~~lR~sLlpsLL~~l~~N~~~~~~~~ 140 (180)
..+.+.+|+++...||.||-|-.+....- +. .....++ | ....-.+|++|----| +.+... --+
T Consensus 28 s~i~~~ir~~f~~~gf~eV~TP~l~~~~~--e~------~~~~f~~-~-~~~~~~yL~~Spql~l-k~l~~~-----~~~ 91 (322)
T cd00776 28 SEVLRAFREFLRENGFTEVHTPKITSTDT--EG------GAELFKV-S-YFGKPAYLAQSPQLYK-EMLIAA-----LER 91 (322)
T ss_pred HHHHHHHHHHHHHCCCEEeeCCceecCCC--Cc------cCCcccc-c-cCCCcceecCCHHHHH-HHHHHh-----hhh
Confidence 35678899999999999999999886432 10 1112222 1 1123345666654432 222211 256
Q ss_pred eEeecceEecCC
Q psy18006 141 LFEISDIVYKDA 152 (180)
Q Consensus 141 iFEiG~V~~~~~ 152 (180)
+||||+||+.++
T Consensus 92 vf~i~~~FR~E~ 103 (322)
T cd00776 92 VYEIGPVFRAEK 103 (322)
T ss_pred hEEeccccccCC
Confidence 999999998765
No 75
>PRK04173 glycyl-tRNA synthetase; Provisional
Probab=67.74 E-value=12 Score=34.09 Aligned_cols=125 Identities=12% Similarity=0.080 Sum_probs=74.0
Q ss_pred hhhhhhhHhhhccCCCCCCCCCcc------cccCCChhhHHHHHHHHHHHH--CCCceeecccccChhHHHHHhccccCC
Q psy18006 29 CDIYEDIAIAYGYNNIPKTMPRFA------SIARQVPLNKLSDQLRGDIAQ--AGFTEVLTFALCSRDDVSVKLRQKMEF 100 (180)
Q Consensus 29 ~DliEEIaR~~Gyd~i~~~~p~~~------~~~~~~~~~~~~~~ir~~L~~--~Gf~Ev~tysl~s~~~~~~~~~~~~~~ 100 (180)
.+-++++|+-.||=-=....-... .+.+..-...+.+..|+..+. .||.||.|-.+++.+. ++.-|-....
T Consensus 4 ~~~~~~~~~~~~~~~~s~~iy~~~~g~~d~~P~G~~l~~~i~~~~r~~~~~~~~~~~ev~tp~i~~~~l-~~~SGH~~~f 82 (456)
T PRK04173 4 MEKIVSLAKRRGFVFPSSEIYGGLAGFWDYGPLGVELKNNIKRAWWKSFVQEREDVVGIDSPIIMPPEV-WEASGHVDNF 82 (456)
T ss_pred HHHHHHHHHhcCCeeeccccccchhcccccChhhHHHHHHHHHHHHHHHHhccCCEEEEeccccCCHHH-HhhcCCcccc
Confidence 456788888777632211111100 111222345677778888877 7999999999999885 5554421100
Q ss_pred -CCcE-------------------------------------EeeCC-------------------------cccchHHH
Q psy18006 101 -IPAV-------------------------------------HIGNP-------------------------KTLEFQIA 117 (180)
Q Consensus 101 -~~~v-------------------------------------~l~NP-------------------------is~e~~~l 117 (180)
+..+ .+.-| -+.+..+|
T Consensus 83 ~d~m~~~~~~~~~~r~d~~~~~~~~~~~~~~~~~~~~~~~~~~m~cp~~~~~~~~~~~~f~l~f~~~~g~~~~~~~~~~l 162 (456)
T PRK04173 83 SDPLVECKKCKKRYRADHLIEELGIDAEGLSNEELKELIRENDIKCPECGGENWTEVRQFNLMFKTFIGPVEDSKSLGYL 162 (456)
T ss_pred CCceeEeCCCCCEeechhhhHHHhhhhccccHHHHHHHHHHhCCCCCCCCCCCCcCccchhhceeecccCccCCCcceee
Confidence 0000 12222 12334567
Q ss_pred HHhhHHHHHHHHHHhhC--C-CCCcceEeecceEecCCCc
Q psy18006 118 RTTLVPGLLKTLAANKK--M-PLPLKLFEISDIVYKDATA 154 (180)
Q Consensus 118 R~sLlpsLL~~l~~N~~--~-~~~~~iFEiG~V~~~~~~~ 154 (180)
|+....|+.-..+...+ + ..|++++|+|+||+...+.
T Consensus 163 Rpetaqg~~~~f~~~~~syr~dLPlr~aq~g~~~RnE~s~ 202 (456)
T PRK04173 163 RPETAQGIFVNFKNVLRTARKKLPFGIAQIGKSFRNEITP 202 (456)
T ss_pred ccccchhHHHHHHHHHHhccccCCeeeeEEchhHhCccCC
Confidence 88777777776666544 3 5799999999999876553
No 76
>PRK03932 asnC asparaginyl-tRNA synthetase; Validated
Probab=67.67 E-value=18 Score=32.98 Aligned_cols=78 Identities=10% Similarity=-0.037 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHCCCceeecccccChhHHHHHhccccCCCCcEEeeC---C----cccchHHHHHhhHHHHHHHHHHhhC
Q psy18006 62 KLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEFIPAVHIGN---P----KTLEFQIARTTLVPGLLKTLAANKK 134 (180)
Q Consensus 62 ~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~~~~~~~~~v~l~N---P----is~e~~~lR~sLlpsLL~~l~~N~~ 134 (180)
...+.+|++|...||.||-|-.+++..- + + ..+...+.. + .-....+|++|----+ +.+..
T Consensus 138 ~i~~~iR~f~~~~gf~EV~TP~L~~~~~--e--g----~~~~F~v~~~~~~~~~~~~~~~~~L~~Spql~l-q~l~~--- 205 (450)
T PRK03932 138 TLAQAIHEFFNENGFVWVDTPIITASDC--E--G----AGELFRVTTLDLDFSKDFFGKEAYLTVSGQLYA-EAYAM--- 205 (450)
T ss_pred HHHHHHHHHHHHCCCEEecCCceeccCC--C--C----CCCceEeecccccccccccCCCcccccCHHHHH-HHHHh---
Confidence 4567799999999999999998886531 1 0 122333421 1 1123347777764433 33321
Q ss_pred CCCCcceEeecceEecCCC
Q psy18006 135 MPLPLKLFEISDIVYKDAT 153 (180)
Q Consensus 135 ~~~~~~iFEiG~V~~~~~~ 153 (180)
. --++||||++|+.++.
T Consensus 206 -g-~~rVf~i~~~FR~E~~ 222 (450)
T PRK03932 206 -A-LGKVYTFGPTFRAENS 222 (450)
T ss_pred -c-cCCeEEeeeccccCCC
Confidence 2 2679999999987664
No 77
>COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=65.40 E-value=8.7 Score=36.44 Aligned_cols=92 Identities=17% Similarity=0.140 Sum_probs=61.1
Q ss_pred ChhhHHHHHHHHHHHHCCCceeecccccChhHHHHHhccccCCC-CcEEeeCCccc-chHHHHHhhHHHHHHHHHHhhC-
Q psy18006 58 VPLNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEFI-PAVHIGNPKTL-EFQIARTTLVPGLLKTLAANKK- 134 (180)
Q Consensus 58 ~~~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~~~~~~~-~~v~l~NPis~-e~~~lR~sLlpsLL~~l~~N~~- 134 (180)
.-...+++-++..+...||+||.|-.+.+.+. ++.=+...... +..... +. +-=++|+.-=|+-+...+.-.+
T Consensus 221 ~ir~~le~y~~~~~~~~Gy~~V~TP~~~~~~l-~~~SGH~~~y~e~mf~~~---~~~~~~~lKpmNCpgh~~ifk~~~~S 296 (589)
T COG0441 221 TIRNLLEDYVRTKLRSYGYQEVKTPVLADLEL-WELSGHWDNYKEDMFLTE---SDDREYALKPMNCPGHILIFKSGLRS 296 (589)
T ss_pred cHHHHHHHHHHHHHHhcCceEecCCeeeeccc-chhccchhhccccceeec---cCChhheeeeccCHhHHHHHhcCCcc
Confidence 34556788899999999999999998888874 33333211111 112111 11 2336788888888877765544
Q ss_pred -CCCCcceEeecceEecCCC
Q psy18006 135 -MPLPLKLFEISDIVYKDAT 153 (180)
Q Consensus 135 -~~~~~~iFEiG~V~~~~~~ 153 (180)
+..|++++|+|.||....+
T Consensus 297 YR~LP~r~~E~g~v~R~E~S 316 (589)
T COG0441 297 YRELPLRLAEFGYVYRYEKS 316 (589)
T ss_pred eeccchhhhhcceeecccCc
Confidence 3578999999999876554
No 78
>cd00777 AspRS_core Asp tRNA synthetase (aspRS) class II core domain. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. AspRS is a homodimer, which attaches a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. AspRS in this family differ from those found in the AsxRS family by a GAD insert in the core domain.
Probab=64.89 E-value=19 Score=30.67 Aligned_cols=78 Identities=12% Similarity=0.076 Sum_probs=44.2
Q ss_pred hHHHHHHHHHHHHCCCceeecccccChhHHHHHhccccCCCCcEEeeCC-cccchHHHHHhhHHHHHHHHHHhhCCCCCc
Q psy18006 61 NKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEFIPAVHIGNP-KTLEFQIARTTLVPGLLKTLAANKKMPLPL 139 (180)
Q Consensus 61 ~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~~~~~~~~~v~l~NP-is~e~~~lR~sLlpsLL~~l~~N~~~~~~~ 139 (180)
.+..+.+|++|...||.||-|-.++.... . +. . ...+.-. ...+.-.|++|---.+=..++. . --
T Consensus 5 s~i~~~iR~f~~~~gfiEV~TP~L~~~~~--~--g~----~-~f~~~~~~~~~~~~~L~~Spql~lk~ll~~----g-~~ 70 (280)
T cd00777 5 SRVIKAIRNFLDEQGFVEIETPILTKSTP--E--GA----R-DFLVPSRLHPGKFYALPQSPQLFKQLLMVS----G-FD 70 (280)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeeecCCC--C--CC----C-CceeccccCCCceeecccCHHHHHHHHHhc----C-cC
Confidence 35788899999999999999998875332 1 11 0 1111111 1122223666542221112211 1 26
Q ss_pred ceEeecceEecCC
Q psy18006 140 KLFEISDIVYKDA 152 (180)
Q Consensus 140 ~iFEiG~V~~~~~ 152 (180)
++|+||+||+.+.
T Consensus 71 ~v~~i~~~fR~e~ 83 (280)
T cd00777 71 RYFQIARCFRDED 83 (280)
T ss_pred cEEEeccceeCCC
Confidence 7999999997654
No 79
>PTZ00401 aspartyl-tRNA synthetase; Provisional
Probab=64.76 E-value=15 Score=34.53 Aligned_cols=77 Identities=10% Similarity=0.137 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHCCCceeecccccChhHHHHHhccccCCCCcEEeeCCcccchHHHHHhhHHHHHHHHHHhhCCCCCcce
Q psy18006 62 KLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEFIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKKMPLPLKL 141 (180)
Q Consensus 62 ~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~~~~~~~~~v~l~NPis~e~~~lR~sLlpsLL~~l~~N~~~~~~~~i 141 (180)
...+.+|++|...||.||-|-.+++... +. +.+..++. --....+|++|- .|.+-+..- ..--++
T Consensus 218 ~i~~~~R~fl~~~gFiEV~TP~L~~~~~--eg------ga~~F~v~--yf~~~~~L~qSp--ql~kq~li~---~g~~rV 282 (550)
T PTZ00401 218 RVCQYFRQFLIDSDFCEIHSPKIINAPS--EG------GANVFKLE--YFNRFAYLAQSP--QLYKQMVLQ---GDVPRV 282 (550)
T ss_pred HHHHHHHHHHHHCCCEEEeCCccccCCC--Cc------cccccccc--cCCCCeecCCCH--HHHHHHHHh---cCCCCE
Confidence 4567799999999999999998876431 10 01112221 112445666653 333222111 113679
Q ss_pred EeecceEecCCC
Q psy18006 142 FEISDIVYKDAT 153 (180)
Q Consensus 142 FEiG~V~~~~~~ 153 (180)
||||+||+.++.
T Consensus 283 feI~p~FRaE~s 294 (550)
T PTZ00401 283 FEVGPVFRSENS 294 (550)
T ss_pred EEEeCeEeCCCC
Confidence 999999987664
No 80
>TIGR00499 lysS_bact lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial. This model represents the lysyl-tRNA synthetases that are class II amino-acyl tRNA synthetases. It includes all eukaryotic and most bacterial examples of the enzyme, but not archaeal or spirochete forms.
Probab=64.07 E-value=10 Score=35.11 Aligned_cols=78 Identities=19% Similarity=0.064 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHCCCceeecccccChhHHHHHhccccCCCCcEEe-eCCcccchHHHHHhhHHHHHHHHHHhhCCCCCcc
Q psy18006 62 KLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEFIPAVHI-GNPKTLEFQIARTTLVPGLLKTLAANKKMPLPLK 140 (180)
Q Consensus 62 ~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~~~~~~~~~v~l-~NPis~e~~~lR~sLlpsLL~~l~~N~~~~~~~~ 140 (180)
...+.+|++|...||.||-|-.+++..- +. ...+..+ -|-.. ...+||.| |.|..-. =.-.. --|
T Consensus 177 ~i~~~iR~fl~~~gF~EVeTP~L~~~~g-----ga---~a~pF~t~~~~~~-~~~yLriS--pELylKr--livgG-~~r 242 (496)
T TIGR00499 177 KIIKAIRRFLDDRGFIEVETPMLQVIPG-----GA---NARPFITHHNALD-MDLYLRIA--PELYLKR--LIVGG-FEK 242 (496)
T ss_pred HHHHHHHHHHHHCcCEEEeCCeeecCCC-----Cc---cceeEEeecccCC-CceEEecC--HHHHHHH--HHhCC-CCc
Confidence 3566789999999999999998875431 10 0112222 23332 33468877 5553211 01111 267
Q ss_pred eEeecceEecCCC
Q psy18006 141 LFEISDIVYKDAT 153 (180)
Q Consensus 141 iFEiG~V~~~~~~ 153 (180)
+||||++|+..+.
T Consensus 243 VfeIg~~FRnE~~ 255 (496)
T TIGR00499 243 VYEIGRNFRNEGV 255 (496)
T ss_pred eEEEecceecCCC
Confidence 9999999987653
No 81
>PRK00960 seryl-tRNA synthetase; Provisional
Probab=63.79 E-value=11 Score=35.25 Aligned_cols=90 Identities=13% Similarity=0.123 Sum_probs=56.7
Q ss_pred HHHHHHHHH-HHHCCCceeecccccChhHHHHHhccccCC-CCcEEeeCC----------------------------cc
Q psy18006 62 KLSDQLRGD-IAQAGFTEVLTFALCSRDDVSVKLRQKMEF-IPAVHIGNP----------------------------KT 111 (180)
Q Consensus 62 ~~~~~ir~~-L~~~Gf~Ev~tysl~s~~~~~~~~~~~~~~-~~~v~l~NP----------------------------is 111 (180)
.+.+.+++. ....||+|+++-.+++.+.+ ++.+..... .....+..| +.
T Consensus 228 aL~~~i~d~~~~k~Gyeev~~P~Li~~ell-~ksGhl~~F~e~my~V~~~~~d~e~~~~~~~~l~~T~Evpl~~~~~~L~ 306 (517)
T PRK00960 228 AFEKLVIEEVLKPLGFDECLFPKLIPLEVM-YKMRYLEGLPEGMYYVCPPKRDPEYFEEFVDEMMVKKEVPIEKLKEKLR 306 (517)
T ss_pred HHHHHHHHhhHhhcCCeEEECCcccCHHHH-hhcCCccCChhhceEeeccccccccccchhhhccccccccccccccccc
Confidence 455555555 34569999999999999874 444432211 122333222 22
Q ss_pred cchHHHHHhhHHHHHHHHHHh-hCC-CCCcceEe-ecceEecCC
Q psy18006 112 LEFQIARTTLVPGLLKTLAAN-KKM-PLPLKLFE-ISDIVYKDA 152 (180)
Q Consensus 112 ~e~~~lR~sLlpsLL~~l~~N-~~~-~~~~~iFE-iG~V~~~~~ 152 (180)
...-+||++--|......+.= +.. ..|+++|+ .|.||+...
T Consensus 307 ~~~yvLrPa~Cp~~y~~~~~~ils~rdLPLrl~e~sG~cFR~Es 350 (517)
T PRK00960 307 DPGYVLAPAQCEPFYQFFQGETVDVDELPIKFFDRSGWTYRWEG 350 (517)
T ss_pred cccccccccCcHHHHHHHhCCcCChhhCCHHHhhccCCceeCCC
Confidence 333488888888887776522 222 46999999 679998764
No 82
>COG3705 HisZ ATP phosphoribosyltransferase involved in histidine biosynthesis [Amino acid transport and metabolism]
Probab=61.92 E-value=15 Score=33.10 Aligned_cols=90 Identities=14% Similarity=0.033 Sum_probs=70.9
Q ss_pred hhhHHHHHHHHHHHHCCCceeecccccChhHHHHHhccccCCCCcEEeeCCcccchHHHHHhhHHHHHHHHHHhhCCCCC
Q psy18006 59 PLNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEFIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKKMPLP 138 (180)
Q Consensus 59 ~~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~~~~~~~~~v~l~NPis~e~~~lR~sLlpsLL~~l~~N~~~~~~ 138 (180)
......+++.+.+...||..|.|-.+---+-+ ..+.-.....+.+++.+..+.. -+||+-+.+.+-...+.-... .|
T Consensus 19 ~~~~i~~~l~~~f~~~Gy~~v~tP~lE~~d~~-l~~~g~~l~~~~f~l~d~~g~~-l~LRpD~T~pVaR~~~~~~~~-~P 95 (390)
T COG3705 19 RKEEIRDQLLALFRAWGYERVETPTLEPADPL-LDGAGEDLRRRLFKLEDETGGR-LGLRPDFTIPVARIHATLLAG-TP 95 (390)
T ss_pred hHHHHHHHHHHHHHHhCCccccccccchhhhh-hhccchhhhhhheEEecCCCCe-EEecccccHHHHHHHHHhcCC-CC
Confidence 44567888999999999999999888776653 2221111125689999999999 899999999998888777665 78
Q ss_pred cceEeecceEecC
Q psy18006 139 LKLFEISDIVYKD 151 (180)
Q Consensus 139 ~~iFEiG~V~~~~ 151 (180)
.|+.=.|+||+..
T Consensus 96 ~Rl~Y~G~Vfr~~ 108 (390)
T COG3705 96 LRLSYAGKVFRAR 108 (390)
T ss_pred ceeeecchhhhcc
Confidence 9999999999876
No 83
>PTZ00417 lysine-tRNA ligase; Provisional
Probab=61.50 E-value=14 Score=35.05 Aligned_cols=76 Identities=21% Similarity=0.178 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHCCCceeecccccChhHHHHHhccccCCCCc-EEeeCCcccchHHHHHhhHHHHHHHHHHhhCCCCCcce
Q psy18006 63 LSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEFIPA-VHIGNPKTLEFQIARTTLVPGLLKTLAANKKMPLPLKL 141 (180)
Q Consensus 63 ~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~~~~~~~~~-v~l~NPis~e~~~lR~sLlpsLL~~l~~N~~~~~~~~i 141 (180)
..+.+|++|...||.||-|-.+++..- |. ...+ ++=.|.+..+. +||.|-=-- |+.+ ...+ --++
T Consensus 259 Ii~aiR~Ff~~rGFlEVeTPiL~~~~G-----GA---~a~PF~T~~n~~d~~l-YLriSpEL~-lKrL---lvgG-~~rV 324 (585)
T PTZ00417 259 IINYLRNFLNDRGFIEVETPTMNLVAG-----GA---NARPFITHHNDLDLDL-YLRIATELP-LKML---IVGG-IDKV 324 (585)
T ss_pred HHHHHHHHHHHCCeEEEeCCeeeccCC-----cc---cceeEEecccCCCcce-EEeecHHHH-HHHH---HHhC-CCCE
Confidence 466799999999999999988876521 10 0111 21124433332 676553221 2221 1112 2579
Q ss_pred EeecceEecCC
Q psy18006 142 FEISDIVYKDA 152 (180)
Q Consensus 142 FEiG~V~~~~~ 152 (180)
||||++|+.++
T Consensus 325 feIgp~FRnE~ 335 (585)
T PTZ00417 325 YEIGKVFRNEG 335 (585)
T ss_pred EEEcccccCCC
Confidence 99999998765
No 84
>PTZ00385 lysyl-tRNA synthetase; Provisional
Probab=60.49 E-value=19 Score=34.62 Aligned_cols=78 Identities=15% Similarity=0.077 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHCCCceeecccccChhHHHHHhccccCCCCcEEe-eCCcccchHHHHHhhHHHHHHHHHHhhCCCCCcc
Q psy18006 62 KLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEFIPAVHI-GNPKTLEFQIARTTLVPGLLKTLAANKKMPLPLK 140 (180)
Q Consensus 62 ~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~~~~~~~~~v~l-~NPis~e~~~lR~sLlpsLL~~l~~N~~~~~~~~ 140 (180)
+..+.+|++|...||.||-|-.|.+... . .......+ .|-.. .-.+||+|- .|..- .=.-.. --+
T Consensus 238 ~I~~aiR~ff~~~gFlEVeTPiL~~~~~--g------a~a~pF~t~~n~~~-~~~yL~~SP--ELylK--rLivgG-~er 303 (659)
T PTZ00385 238 VMLQALRDYFNERNFVEVETPVLHTVAS--G------ANAKSFVTHHNANA-MDLFLRVAP--ELHLK--QCIVGG-MER 303 (659)
T ss_pred HHHHHHHHHHHHCCCEEeeCCEeeccCC--C------CCccceEeecccCC-CCEEecCCh--HHHHH--HHhhcc-cCC
Confidence 3567799999999999999999865421 1 01112222 12221 223566653 32211 111112 267
Q ss_pred eEeecceEecCCC
Q psy18006 141 LFEISDIVYKDAT 153 (180)
Q Consensus 141 iFEiG~V~~~~~~ 153 (180)
+||||++|+.++.
T Consensus 304 VyeIg~~FRnE~~ 316 (659)
T PTZ00385 304 IYEIGKVFRNEDA 316 (659)
T ss_pred EEEEeceecCCCC
Confidence 9999999987653
No 85
>PRK05159 aspC aspartyl-tRNA synthetase; Provisional
Probab=59.85 E-value=24 Score=31.99 Aligned_cols=77 Identities=13% Similarity=0.071 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHCCCceeecccccChhHHHHHhccccCCCCcEEeeCCcccchHHHHHhhHHHHHHHHHHhhCCCCCcce
Q psy18006 62 KLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEFIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKKMPLPLKL 141 (180)
Q Consensus 62 ~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~~~~~~~~~v~l~NPis~e~~~lR~sLlpsLL~~l~~N~~~~~~~~i 141 (180)
...+.+|++|...||.||-|-.+++... + ...+.+.+.- . ....+|++|---- ++.+. ... --++
T Consensus 141 ~i~~~iR~ff~~~gf~EV~TP~L~~~~~--e------g~~~~f~~~~-~-~~~~~L~~Spql~-~q~l~---~~g-~~rV 205 (437)
T PRK05159 141 EVLRAFREFLYENGFTEIFTPKIVASGT--E------GGAELFPIDY-F-EKEAYLAQSPQLY-KQMMV---GAG-FERV 205 (437)
T ss_pred HHHHHHHHHHHHCCCEEEeCCcccccCC--C------CCcceEeEEe-c-CCceEecCCHHHH-HHHHH---hcC-CCcE
Confidence 4567799999999999999998875421 0 0112233211 1 1233566654332 22221 111 2679
Q ss_pred EeecceEecCCC
Q psy18006 142 FEISDIVYKDAT 153 (180)
Q Consensus 142 FEiG~V~~~~~~ 153 (180)
||||++|+.++.
T Consensus 206 f~i~~~FR~E~~ 217 (437)
T PRK05159 206 FEIGPVFRAEEH 217 (437)
T ss_pred EEEeceeeCCCC
Confidence 999999987664
No 86
>PRK00484 lysS lysyl-tRNA synthetase; Reviewed
Probab=59.46 E-value=17 Score=33.65 Aligned_cols=77 Identities=19% Similarity=0.088 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHCCCceeecccccChhHHHHHhccccCCCCcEEe-eCCcccchHHHHHhhHHHHH-HHHHHhhCCCCCc
Q psy18006 62 KLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEFIPAVHI-GNPKTLEFQIARTTLVPGLL-KTLAANKKMPLPL 139 (180)
Q Consensus 62 ~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~~~~~~~~~v~l-~NPis~e~~~lR~sLlpsLL-~~l~~N~~~~~~~ 139 (180)
+..+.+|++|...||.||-|-.+++... +. ...+... .|-.. ...+||+|- .|. +.+- ... --
T Consensus 177 ~i~~~iR~f~~~~gF~EVeTPiL~~~~~-----Ga---~a~pF~t~~~~~~-~~~yL~~Sp--ql~lk~l~---v~g-~~ 241 (491)
T PRK00484 177 KIISAIRRFLDNRGFLEVETPMLQPIAG-----GA---AARPFITHHNALD-IDLYLRIAP--ELYLKRLI---VGG-FE 241 (491)
T ss_pred HHHHHHHHHHHHCCCEEEECCceeccCC-----Cc---cceeeeeccccCC-CceEeccCH--HHHHHHHH---hcc-CC
Confidence 4567799999999999999998874421 10 0112222 23222 223566553 332 2111 111 26
Q ss_pred ceEeecceEecCCC
Q psy18006 140 KLFEISDIVYKDAT 153 (180)
Q Consensus 140 ~iFEiG~V~~~~~~ 153 (180)
++||||++|+.++.
T Consensus 242 rVfei~~~FR~E~~ 255 (491)
T PRK00484 242 RVYEIGRNFRNEGI 255 (491)
T ss_pred cEEEEecceecCCC
Confidence 79999999987653
No 87
>TIGR00458 aspS_arch aspartyl-tRNA synthetase, archaeal type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_arch, represents aspartyl-tRNA synthetases from the eukaryotic cytosol and from the Archaea. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn).
Probab=58.54 E-value=17 Score=32.96 Aligned_cols=77 Identities=18% Similarity=0.082 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHCCCceeecccccChhHHHHHhccccCCCCcEEeeCCcccchHHHHHhhHHHHHHHHHHhhCCCCCcce
Q psy18006 62 KLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEFIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKKMPLPLKL 141 (180)
Q Consensus 62 ~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~~~~~~~~~v~l~NPis~e~~~lR~sLlpsLL~~l~~N~~~~~~~~i 141 (180)
...+.+|++|.+.||.||-|-.+++..- +. ..+...+. ......+|++|----+=..++. . --++
T Consensus 138 ~i~~~iR~ff~~~gf~EV~TP~L~~~~~--eg------~~~~f~v~--~~~~~~yL~~Spql~~q~li~~----g-~~rV 202 (428)
T TIGR00458 138 GVLESVREFLAEEGFIEVHTPKLVASAT--EG------GTELFPIT--YFEREAFLGQSPQLYKQQLMAA----G-FERV 202 (428)
T ss_pred HHHHHHHHHHHHCCCEEEeCCceecCCC--CC------CcceeeeE--ecCCcEEECcCHHHHHHHHHhc----c-cCcE
Confidence 3566789999999999999999885531 10 11122221 1123345666532221111211 1 2679
Q ss_pred EeecceEecCCC
Q psy18006 142 FEISDIVYKDAT 153 (180)
Q Consensus 142 FEiG~V~~~~~~ 153 (180)
||||++|+.++.
T Consensus 203 f~i~~~FR~E~~ 214 (428)
T TIGR00458 203 YEIGPIFRAEEH 214 (428)
T ss_pred EEEecccccCCC
Confidence 999999987664
No 88
>PLN02320 seryl-tRNA synthetase
Probab=58.49 E-value=9.1 Score=35.60 Aligned_cols=86 Identities=19% Similarity=0.173 Sum_probs=50.0
Q ss_pred hHHHHHHHHHHHHCCCceeecccccChhHHHHHhcccc-CCC-CcEEeeCCcccchHHHHHhhHHHHHHHHHHhh--C-C
Q psy18006 61 NKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKM-EFI-PAVHIGNPKTLEFQIARTTLVPGLLKTLAANK--K-M 135 (180)
Q Consensus 61 ~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~~~~-~~~-~~v~l~NPis~e~~~lR~sLlpsLL~~l~~N~--~-~ 135 (180)
+.+.+.+.+.+...||+|+.|-.+++.+.+ +.-|... ... ...+|.+ +++-.+-|+=.| |.+...+. . +
T Consensus 237 ~ALi~f~ld~~~~~Gy~eV~tP~lv~~~l~-~~sG~~p~~e~~~~y~ie~---ed~~Li~TaE~P--l~~~~~~~ils~~ 310 (502)
T PLN02320 237 MALVNWTLSEVMKKGFTPLTTPEIVRSSVV-EKCGFQPRGDNTQVYSIDG---SDQCLIGTAEIP--VGGIHMDSILLES 310 (502)
T ss_pred HHHHHHHHHHHHHcCCEEEECCccchHHHH-HhcCCCcccccCceeEECC---CceEEeeccccc--ccccccccccCHh
Confidence 456777778888899999999999999864 4444321 111 3455543 222111111111 11222221 2 2
Q ss_pred CCCcceEeecceEecCC
Q psy18006 136 PLPLKLFEISDIVYKDA 152 (180)
Q Consensus 136 ~~~~~iFEiG~V~~~~~ 152 (180)
..|+|++++|.+|+...
T Consensus 311 dLPlRy~~~s~cFR~EA 327 (502)
T PLN02320 311 ALPLKYVAFSHCFRTEA 327 (502)
T ss_pred hCCceeEEecccccccc
Confidence 46999999999997653
No 89
>PRK12820 bifunctional aspartyl-tRNA synthetase/aspartyl/glutamyl-tRNA amidotransferase subunit C; Provisional
Probab=56.65 E-value=29 Score=33.71 Aligned_cols=78 Identities=17% Similarity=0.131 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHCCCceeecccccChhHHHHHhccccCCCCcEEeeCCcccchHHHHHhhHHHHHHHHHHhhCCCCCcce
Q psy18006 62 KLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEFIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKKMPLPLKL 141 (180)
Q Consensus 62 ~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~~~~~~~~~v~l~NPis~e~~~lR~sLlpsLL~~l~~N~~~~~~~~i 141 (180)
+..+.+|++|...||.||-|-.|+.... + + ..+.+.-.+-...++-.|++| |.|.+-+-.- ..--|+
T Consensus 161 ~i~~~iR~fl~~~gFiEVeTPiL~~s~~--e--G----Ar~~~~p~~~~~~~~y~L~qS--PQlykq~lm~---~G~~rv 227 (706)
T PRK12820 161 RIIKCARDFLDSRGFLEIETPILTKSTP--E--G----ARDYLVPSRIHPKEFYALPQS--PQLFKQLLMI---AGFERY 227 (706)
T ss_pred HHHHHHHHHHHHCCCEEEeCCccccCCC--C--C----CcceEEeeecCCCcceecCCC--HHHHHHHHHh---ccCCcE
Confidence 4567799999999999999998885332 1 0 011111111011222235554 4443333211 112679
Q ss_pred EeecceEecCC
Q psy18006 142 FEISDIVYKDA 152 (180)
Q Consensus 142 FEiG~V~~~~~ 152 (180)
||||++|+..+
T Consensus 228 fqI~~~FR~E~ 238 (706)
T PRK12820 228 FQLARCFRDED 238 (706)
T ss_pred EEEechhcCCC
Confidence 99999997655
No 90
>PRK12445 lysyl-tRNA synthetase; Reviewed
Probab=55.54 E-value=20 Score=33.23 Aligned_cols=77 Identities=22% Similarity=0.153 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHCCCceeecccccChhHHHHHhccccCCCCcEEeeCCcccchHHHHHhhHHHH-HHHHHHhhCCCCCcce
Q psy18006 63 LSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEFIPAVHIGNPKTLEFQIARTTLVPGL-LKTLAANKKMPLPLKL 141 (180)
Q Consensus 63 ~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~~~~~~~~~v~l~NPis~e~~~lR~sLlpsL-L~~l~~N~~~~~~~~i 141 (180)
..+.+|++|...||.||-|-.+.+..- +- .....+.-.|-... ..+||+|- .| |+.+. -.. --++
T Consensus 190 i~~~iR~f~~~~gFiEVeTPiL~~~~g-----Ga--~a~pF~t~~~~~~~-~~yL~~Sp--ELylKrli---vgG-~~rV 255 (505)
T PRK12445 190 ILAAIRQFMVARGFMEVETPMMQVIPG-----GA--SARPFITHHNALDL-DMYLRIAP--ELYLKRLV---VGG-FERV 255 (505)
T ss_pred HHHHHHHHHHHCCCEEeeCCeeEecCC-----CC--cccceecccccCCc-ceeeecCH--HHHHHHHH---hcc-CCcE
Confidence 456689999999999999988865321 10 00011111343332 23677764 33 22211 111 2679
Q ss_pred EeecceEecCCC
Q psy18006 142 FEISDIVYKDAT 153 (180)
Q Consensus 142 FEiG~V~~~~~~ 153 (180)
||||++|+..+.
T Consensus 256 feIg~~FRnE~~ 267 (505)
T PRK12445 256 FEINRNFRNEGI 267 (505)
T ss_pred EEEehhccCCCC
Confidence 999999987653
No 91
>PLN02502 lysyl-tRNA synthetase
Probab=54.91 E-value=24 Score=33.22 Aligned_cols=77 Identities=16% Similarity=0.056 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHCCCceeecccccChhHHHHHhccccCCCCcEEe-eCCcccchHHHHHhhHHHHHHHHHHhhCCCCCcce
Q psy18006 63 LSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEFIPAVHI-GNPKTLEFQIARTTLVPGLLKTLAANKKMPLPLKL 141 (180)
Q Consensus 63 ~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~~~~~~~~~v~l-~NPis~e~~~lR~sLlpsLL~~l~~N~~~~~~~~i 141 (180)
..+.+|++|...||.||-|-.+++..- +. ...+... .|-+. ...+||+|-=--|=..+.. . --++
T Consensus 235 i~~~iR~fl~~~gF~EVeTPiL~~~~g-----GA---~a~pF~t~~n~~~-~~~yL~~Spel~lK~L~v~----g-~~rV 300 (553)
T PLN02502 235 IISYIRRFLDDRGFLEVETPMLNMIAG-----GA---AARPFVTHHNDLN-MDLYLRIATELHLKRLVVG----G-FERV 300 (553)
T ss_pred HHHHHHHHHHHCCCEEEECCeeeccCC-----Cc---cccceeeecccCC-cceeeecCHHHHHHHHHHh----c-cCCE
Confidence 456799999999999999988875321 10 0112222 23332 3346766632221111211 1 2679
Q ss_pred EeecceEecCCC
Q psy18006 142 FEISDIVYKDAT 153 (180)
Q Consensus 142 FEiG~V~~~~~~ 153 (180)
||||++|+.++.
T Consensus 301 feIg~~FRnE~~ 312 (553)
T PLN02502 301 YEIGRQFRNEGI 312 (553)
T ss_pred EEEcCeeeCCCC
Confidence 999999987653
No 92
>KOG0025|consensus
Probab=50.67 E-value=11 Score=33.05 Aligned_cols=42 Identities=24% Similarity=0.223 Sum_probs=30.0
Q ss_pred hhhhhHhhhccCCCCCCCCCcccccCCChhhHHHHHHHHHHHHCCCceeeccc
Q psy18006 31 IYEDIAIAYGYNNIPKTMPRFASIARQVPLNKLSDQLRGDIAQAGFTEVLTFA 83 (180)
Q Consensus 31 liEEIaR~~Gyd~i~~~~p~~~~~~~~~~~~~~~~~ir~~L~~~Gf~Ev~tys 83 (180)
.|=++||+.||..|-.. ..+.-.+++++.|.++|-+||+|=+
T Consensus 176 ~ViQlaka~GiktinvV-----------RdR~~ieel~~~Lk~lGA~~ViTee 217 (354)
T KOG0025|consen 176 AVIQLAKALGIKTINVV-----------RDRPNIEELKKQLKSLGATEVITEE 217 (354)
T ss_pred HHHHHHHHhCcceEEEe-----------ecCccHHHHHHHHHHcCCceEecHH
Confidence 35689999999988422 1111255678888889999999844
No 93
>KOG1936|consensus
Probab=50.26 E-value=40 Score=31.13 Aligned_cols=121 Identities=17% Similarity=0.157 Sum_probs=79.7
Q ss_pred CCCCchhhhhhhHhhhccCCCC------------CCCCCcccccCCC--hhh-----HHHHHHHHHHHHCCCceeecccc
Q psy18006 24 DIIHTCDIYEDIAIAYGYNNIP------------KTMPRFASIARQV--PLN-----KLSDQLRGDIAQAGFTEVLTFAL 84 (180)
Q Consensus 24 DI~~~~DliEEIaR~~Gyd~i~------------~~~p~~~~~~~~~--~~~-----~~~~~ir~~L~~~Gf~Ev~tysl 84 (180)
+-....++-|++|.+.--.|-. .+.|. |..+ |.+ ..-+.+++...-.|+.++-|-.|
T Consensus 26 ~~a~~~~~~~~va~~~~~~~~~~~~~~~~~~k~~lKtPK----GTrD~~p~qm~lRe~if~~i~~vFkrhGa~~iDTPVF 101 (518)
T KOG1936|consen 26 SCASPEQISEEVALILALKNGLGRSGSIFKKKFSLKTPK----GTRDFSPEQMALREKIFSTIKEVFKRHGAETIDTPVF 101 (518)
T ss_pred ccCChhHhhHHHHHHHHHhcccCCCCCCcCcceeecCCC----CCCcCCHHHHHHHHHHHHHHHHHHHHcCCeeccccch
Confidence 4556778889999988555322 12222 2221 222 33455788888899999999999
Q ss_pred cChhHHHHHhccccCCCCcEEeeCCcccchHHHHHhhHHHHHHHHHHhhCCCCCcceEeecceEecCCC
Q psy18006 85 CSRDDVSVKLRQKMEFIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKKMPLPLKLFEISDIVYKDAT 153 (180)
Q Consensus 85 ~s~~~~~~~~~~~~~~~~~v~l~NPis~e~~~lR~sLlpsLL~~l~~N~~~~~~~~iFEiG~V~~~~~~ 153 (180)
-=++.+..+.|-+ .+.|-=.---.-|.-.||.-|.+.+-.-++.|. ...++-|-||+||+.+..
T Consensus 102 ElkeiL~gKYGEd---skLiYdlkDQGGEl~SLRYDLTVPfARylAmNk--i~sikRy~iAkVyRRd~P 165 (518)
T KOG1936|consen 102 ELKEILTGKYGED---SKLIYDLKDQGGELCSLRYDLTVPFARYLAMNK--ITSIKRYHIAKVYRRDQP 165 (518)
T ss_pred hHHHHHhhhcccc---cceeEehhhcCCcEEEeecccccHHHHHHHHcc--cccceeeeEEEEEeccCc
Confidence 8877654444421 122221122244666899999999999999993 346899999999998764
No 94
>COG2024 Phenylalanyl-tRNA synthetase alpha subunit (archaeal type) [Translation, ribosomal structure and biogenesis]
Probab=46.45 E-value=20 Score=32.63 Aligned_cols=99 Identities=21% Similarity=0.284 Sum_probs=73.8
Q ss_pred cccCCChhhHHHHHHHHHHHHCCCceeecccccChhHHHHHhccc---------------cC------------------
Q psy18006 53 SIARQVPLNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQK---------------ME------------------ 99 (180)
Q Consensus 53 ~~~~~~~~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~~~---------------~~------------------ 99 (180)
..|..++......++|+.-...||.|+++--.++++..++.||-+ ..
T Consensus 42 ~~Gk~Hpl~~TIq~lReAYLr~GF~EmvNPlivde~evykQFGpEA~AVLDRCFYLagLPrPdVGlg~eki~~i~~i~~d 121 (536)
T COG2024 42 ETGKPHPLYETIQRLREAYLRMGFSEMVNPLIVDEEEVYKQFGPEALAVLDRCFYLAGLPRPDVGLGAEKIEQIEEIGID 121 (536)
T ss_pred ccCCcCcHHHHHHHHHHHHHHhhHHHhcCccccCHHHHHHHhChHHHHHHHHHHHhcCCCCCCcCccHHHHHHHHHhcCC
Confidence 467788999999999999999999999999999998887777521 00
Q ss_pred --C--------------------C-------Cc------------------EEeeCCcccchHHHHHhhHHHHHHHHHHh
Q psy18006 100 --F--------------------I-------PA------------------VHIGNPKTLEFQIARTTLVPGLLKTLAAN 132 (180)
Q Consensus 100 --~--------------------~-------~~------------------v~l~NPis~e~~~lR~sLlpsLL~~l~~N 132 (180)
+ + ++ ++=+-|.|. .-.||.++..|..-+|+.=
T Consensus 122 ~~de~~e~lrevlh~YKKG~idGDdLv~eIa~aL~v~d~~~~~vle~vFPEfk~Lkp~s~-tlTLRSHMTsGWFItLs~i 200 (536)
T COG2024 122 EPDEKVERLREVLHAYKKGEIDGDDLVHEIAEALEVDDGTGLRVLEEVFPEFKDLKPESS-TLTLRSHMTSGWFITLSEI 200 (536)
T ss_pred CchhhHHHHHHHHHHHhcCCCCcchhHHHHHHHhccCcchHHHHHHHhChHHhhcCCCCC-ceehhhhcccceeeeHHHH
Confidence 0 0 00 111223332 3468999999999998877
Q ss_pred hCC-CCCcceEeecceEecCC
Q psy18006 133 KKM-PLPLKLFEISDIVYKDA 152 (180)
Q Consensus 133 ~~~-~~~~~iFEiG~V~~~~~ 152 (180)
.++ ..|+++|-|-++|...+
T Consensus 201 ~~r~~~PlklFSIDRCFRREQ 221 (536)
T COG2024 201 LKREDPPLKLFSIDRCFRREQ 221 (536)
T ss_pred HhccCCCceeeehhHHhhhhh
Confidence 665 56899999999998764
No 95
>PF14383 VARLMGL: DUF761-associated sequence motif
Probab=45.95 E-value=12 Score=22.04 Aligned_cols=13 Identities=23% Similarity=0.611 Sum_probs=11.6
Q ss_pred hHhhhccCCCCCC
Q psy18006 35 IAIAYGYNNIPKT 47 (180)
Q Consensus 35 IaR~~Gyd~i~~~ 47 (180)
|||+.|.|.+|..
T Consensus 18 varLMGld~lP~~ 30 (34)
T PF14383_consen 18 VARLMGLDSLPDS 30 (34)
T ss_pred HHHHhccccCCcc
Confidence 8999999999864
No 96
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=44.99 E-value=78 Score=32.39 Aligned_cols=76 Identities=20% Similarity=0.191 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHCCCceeecccccChhHHHHHhccccCCCCcEEe-eCCcccchHHHHHhhHHHHH-HHHHHhhCCCCCcc
Q psy18006 63 LSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEFIPAVHI-GNPKTLEFQIARTTLVPGLL-KTLAANKKMPLPLK 140 (180)
Q Consensus 63 ~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~~~~~~~~~v~l-~NPis~e~~~lR~sLlpsLL-~~l~~N~~~~~~~~ 140 (180)
..+.+|++|...||.||-|-.+++..- +- ..++... .|-...+ .+||+| |.|. +.+- -.. --|
T Consensus 776 i~~~iR~fl~~~gFlEVeTPiL~~~~g-----Ga---~a~pF~t~~~~~~~~-~yLriS--PELylKrLi---vgG-~er 840 (1094)
T PRK02983 776 VVRAVRETLVARGFLEVETPILQQVHG-----GA---NARPFVTHINAYDMD-LYLRIA--PELYLKRLC---VGG-VER 840 (1094)
T ss_pred HHHHHHHHHHHCCCEEEeCCEeeccCC-----Cc---ccceeEeeecCCCcc-chhhcC--hHHHHHHHH---hcc-cCc
Confidence 456699999999999999999974321 00 0112221 2333222 377766 3332 2211 111 267
Q ss_pred eEeecceEecCCC
Q psy18006 141 LFEISDIVYKDAT 153 (180)
Q Consensus 141 iFEiG~V~~~~~~ 153 (180)
+||||++|+.++.
T Consensus 841 VFEIg~~FRnE~~ 853 (1094)
T PRK02983 841 VFELGRNFRNEGV 853 (1094)
T ss_pred eEEEcceecCCCC
Confidence 9999999987653
No 97
>PRK00476 aspS aspartyl-tRNA synthetase; Validated
Probab=43.52 E-value=55 Score=31.04 Aligned_cols=77 Identities=17% Similarity=0.197 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHCCCceeecccccChhHHHHHhccccCCCCcEEeeCC-cccchHHHHHhhHHHHHHHHHHhhCCCCCcc
Q psy18006 62 KLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEFIPAVHIGNP-KTLEFQIARTTLVPGLLKTLAANKKMPLPLK 140 (180)
Q Consensus 62 ~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~~~~~~~~~v~l~NP-is~e~~~lR~sLlpsLL~~l~~N~~~~~~~~ 140 (180)
++.+.+|++|...||.||-|-.++.... + + .....+... ...++-.|++| |.|.+.+..- .. --|
T Consensus 146 ~i~~~iR~ff~~~gFiEV~TP~L~~s~~--e--g-----a~~f~v~~~~~~~~~~~L~qS--pql~kq~l~~--~g-~~r 211 (588)
T PRK00476 146 KVTSAIRNFLDDNGFLEIETPILTKSTP--E--G-----ARDYLVPSRVHPGKFYALPQS--PQLFKQLLMV--AG-FDR 211 (588)
T ss_pred HHHHHHHHHHHHCCCEEEECCeeecCCC--C--C-----CccceecccccCCceeecCCC--HHHHHHHHHh--cc-cCc
Confidence 4567799999999999999999985431 1 1 001111111 11223345544 3333322111 11 267
Q ss_pred eEeecceEecCC
Q psy18006 141 LFEISDIVYKDA 152 (180)
Q Consensus 141 iFEiG~V~~~~~ 152 (180)
+|+||+||+.++
T Consensus 212 vfqi~~~FR~E~ 223 (588)
T PRK00476 212 YYQIARCFRDED 223 (588)
T ss_pred eEEEeceeecCC
Confidence 999999998765
No 98
>PF08002 DUF1697: Protein of unknown function (DUF1697); InterPro: IPR012545 This family contains many hypothetical bacterial proteins.; PDB: 2HIY_B.
Probab=41.44 E-value=22 Score=27.03 Aligned_cols=20 Identities=35% Similarity=0.586 Sum_probs=16.4
Q ss_pred HHHHHHHHHHCCCceeeccc
Q psy18006 64 SDQLRGDIAQAGFTEVLTFA 83 (180)
Q Consensus 64 ~~~ir~~L~~~Gf~Ev~tys 83 (180)
-..+|+.|.++||+++.||-
T Consensus 21 MaeLr~~l~~~Gf~~V~Tyi 40 (137)
T PF08002_consen 21 MAELREALEDLGFTNVRTYI 40 (137)
T ss_dssp HHHHHHHHHHCT-EEEEEET
T ss_pred HHHHHHHHHHcCCCCceEEE
Confidence 45689999999999999983
No 99
>TIGR00459 aspS_bact aspartyl-tRNA synthetase, bacterial type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_bact, represents aspartyl-tRNA synthetases from the Bacteria and from mitochondria. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn). This model generates very low scores for the archaeal type of aspS and for asnS; scores between the trusted and noise cutoffs represent fragmentary sequences.
Probab=38.53 E-value=87 Score=29.78 Aligned_cols=78 Identities=19% Similarity=0.189 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHCCCceeecccccChhHHHHHhccccCCCCcEEeeCCcccchHHHHHhhHHHHHHHHHHhhCCCCCcce
Q psy18006 62 KLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEFIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKKMPLPLKL 141 (180)
Q Consensus 62 ~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~~~~~~~~~v~l~NPis~e~~~lR~sLlpsLL~~l~~N~~~~~~~~i 141 (180)
+..+.+|++|...||.||-|-.+++... + +. .+.+.-.+-...++-.|++| |.|.+.+..= .. --|+
T Consensus 143 ~i~~~iR~ff~~~gFiEVeTP~L~~s~~--e--Ga----r~f~vp~~~~~~~~y~L~qS--pQlykq~l~v--~G-~erv 209 (583)
T TIGR00459 143 KVTKAVRNFLDQQGFLEIETPMLTKSTP--E--GA----RDYLVPSRVHKGEFYALPQS--PQLFKQLLMV--SG-VDRY 209 (583)
T ss_pred HHHHHHHHHHHHCCCEEEECCeeccCCC--C--CC----cceeeeeecCCCceeecCCC--HHHHHHHHHh--cc-cCcE
Confidence 4567799999999999999999985321 1 00 11111111011222235544 3343322111 11 2679
Q ss_pred EeecceEecCC
Q psy18006 142 FEISDIVYKDA 152 (180)
Q Consensus 142 FEiG~V~~~~~ 152 (180)
||||++|+.++
T Consensus 210 fqI~~~FR~E~ 220 (583)
T TIGR00459 210 YQIARCFRDED 220 (583)
T ss_pred EEEcceeeCCC
Confidence 99999998655
No 100
>PRK09616 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed
Probab=35.82 E-value=30 Score=32.29 Aligned_cols=40 Identities=15% Similarity=0.312 Sum_probs=33.6
Q ss_pred cceEEee-cCCeEEEEcCCCCCCCCCchhhhhhhHhhhccC
Q psy18006 3 LQTKILG-SGAEVSVSIPPTRHDIIHTCDIYEDIAIAYGYN 42 (180)
Q Consensus 3 ~~~~v~~-~~~~~~v~vP~~R~DI~~~~DliEEIaR~~Gyd 42 (180)
+|+++.. ++..+.+.+++.|+|+..-.=|+-|+|-++|-.
T Consensus 31 ~G~e~~~~~D~ileieiTpNR~D~ls~~GiARelaa~~~~~ 71 (552)
T PRK09616 31 LKCEVEEIEDDEIKIEFNPDRPDLLSVEGLARALRGFLGIE 71 (552)
T ss_pred cCCccccCCCceEEEEcCCCchhhhhHHHHHHHHHHHhCCC
Confidence 4666663 345699999999999999999999999999865
No 101
>COG4427 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.44 E-value=39 Score=29.38 Aligned_cols=27 Identities=37% Similarity=0.463 Sum_probs=21.5
Q ss_pred hhHHHHHHHHHHhhCCCCCcceEeecceEe
Q psy18006 120 TLVPGLLKTLAANKKMPLPLKLFEISDIVY 149 (180)
Q Consensus 120 sLlpsLL~~l~~N~~~~~~~~iFEiG~V~~ 149 (180)
.|+|+||-+.. ...+|+.|||||.-..
T Consensus 126 all~gll~va~---q~~~Pl~l~EiGsSaG 152 (350)
T COG4427 126 ALLPGLLIVAL---QFGKPLVLSEIGSSAG 152 (350)
T ss_pred HHHHHHHHHHH---hcCCCeEEEecccccc
Confidence 48999998873 3467999999998764
No 102
>PLN02903 aminoacyl-tRNA ligase
Probab=27.82 E-value=1.3e+02 Score=29.05 Aligned_cols=78 Identities=14% Similarity=0.141 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHH-CCCceeecccccChhHHHHHhccccCCCCcEEeeCCcccchHHHHHhhHHHHHHHHHHhhCCCCCcc
Q psy18006 62 KLSDQLRGDIAQ-AGFTEVLTFALCSRDDVSVKLRQKMEFIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKKMPLPLK 140 (180)
Q Consensus 62 ~~~~~ir~~L~~-~Gf~Ev~tysl~s~~~~~~~~~~~~~~~~~v~l~NPis~e~~~lR~sLlpsLL~~l~~N~~~~~~~~ 140 (180)
+..+.+|++|.. .||.||-|-.++.... + + ..+.+...+-...++-.|++| |.|.+.+.. ... --|
T Consensus 208 ~i~~~iR~fl~~~~gFiEVeTPiL~~st~--e--G----ardf~v~~~~~~g~~y~L~qS--PQlykQ~Lm--~~G-~~R 274 (652)
T PLN02903 208 RVVKLIRRYLEDVHGFVEIETPILSRSTP--E--G----ARDYLVPSRVQPGTFYALPQS--PQLFKQMLM--VSG-FDR 274 (652)
T ss_pred HHHHHHHHHHHhcCCeEEEECCeeccCCC--C--C----CcccEEeeecCCCcccccCCC--HHHHHHHHH--hcc-CCc
Confidence 456779999997 9999999998875432 1 0 011122111111233346554 444333211 111 267
Q ss_pred eEeecceEecCC
Q psy18006 141 LFEISDIVYKDA 152 (180)
Q Consensus 141 iFEiG~V~~~~~ 152 (180)
+||||++|+.++
T Consensus 275 vFqIa~~FR~E~ 286 (652)
T PLN02903 275 YYQIARCFRDED 286 (652)
T ss_pred EEEEehhhccCC
Confidence 999999997654
No 103
>COG2088 SpoVG Uncharacterized protein, involved in the regulation of septum location [Cell envelope biogenesis, outer membrane]
Probab=26.20 E-value=72 Score=22.93 Aligned_cols=20 Identities=15% Similarity=0.434 Sum_probs=14.6
Q ss_pred ceEEeecCCeEEEEcCCCCC
Q psy18006 4 QTKILGSGAEVSVSIPPTRH 23 (180)
Q Consensus 4 ~~~v~~~~~~~~v~vP~~R~ 23 (180)
+..|...++++.|..||-|.
T Consensus 33 dirVi~G~~GlfVAMPSrrt 52 (95)
T COG2088 33 DIRVIEGNNGLFVAMPSRRT 52 (95)
T ss_pred ccEEEeCCcceEEEccCccC
Confidence 34555555679999999984
No 104
>PF10613 Lig_chan-Glu_bd: Ligated ion channel L-glutamate- and glycine-binding site; InterPro: IPR019594 This entry, sometimes called the S1 domain, is the luminal domain just upstream of the first, M1, transmembrane region of transmembrane ion-channel proteins, and binds L-glutamate and glycine [, ]. It is found in association with IPR001320 from INTERPRO. ; GO: 0004970 ionotropic glutamate receptor activity, 0005234 extracellular-glutamate-gated ion channel activity, 0016020 membrane; PDB: 4E0W_A 3S9E_A 3QXM_B 2F34_A 3C34_B 3S2V_A 3GBB_B 2F36_D 4E0X_A 1TXF_A ....
Probab=25.79 E-value=34 Score=22.89 Aligned_cols=16 Identities=19% Similarity=0.358 Sum_probs=12.9
Q ss_pred hhhhhhhHhhhccCCC
Q psy18006 29 CDIYEDIAIAYGYNNI 44 (180)
Q Consensus 29 ~DliEEIaR~~Gyd~i 44 (180)
+||++++|+..||+--
T Consensus 23 iDll~~la~~l~F~y~ 38 (65)
T PF10613_consen 23 IDLLEELAEELNFTYE 38 (65)
T ss_dssp HHHHHHHHHHHT-EEE
T ss_pred HHHHHHHHHHcCCeEE
Confidence 7999999999988743
No 105
>TIGR00471 pheT_arch phenylalanyl-tRNA synthetase, beta subunit. Every known example of the phenylalanyl-tRNA synthetase, except the monomeric form of mitochondrial, is an alpha 2 beta 2 heterotetramer. The beta subunits break into two subfamilies that are considerably different in sequence, length, and pattern of gaps. This model represents the subfamily that includes the beta subunit from eukaryotic cytosol, the Archaea, and spirochetes.
Probab=25.54 E-value=55 Score=30.57 Aligned_cols=40 Identities=18% Similarity=0.310 Sum_probs=31.8
Q ss_pred cceEEeec-CCe--EEEEcCCCCCCCCCchhhhhhhHhhhccC
Q psy18006 3 LQTKILGS-GAE--VSVSIPPTRHDIIHTCDIYEDIAIAYGYN 42 (180)
Q Consensus 3 ~~~~v~~~-~~~--~~v~vP~~R~DI~~~~DliEEIaR~~Gyd 42 (180)
.+++|++. ++. +.+.+++.|+|+..-.=|+-|++-++|-.
T Consensus 30 ~~~eve~~~~~~~i~eieiTpNR~D~lS~~GiARel~a~~~~~ 72 (551)
T TIGR00471 30 MGDEIEGFDEESPEIKVEFNPNRPDLLSVEGLARSLRGYLGIE 72 (551)
T ss_pred cccccccccCCcceEEEEcCCCCchhhhHHHHHHHHHHHhCCC
Confidence 45666642 333 89999999999999999999999998743
No 106
>PF11537 DUF3227: Protein of unknown function (DUF3227); InterPro: IPR021609 This archaeal family of proteins has no known function. ; PDB: 2P9X_C.
Probab=25.03 E-value=40 Score=24.65 Aligned_cols=22 Identities=18% Similarity=0.386 Sum_probs=15.7
Q ss_pred CCCCCCCchhhhhhhHhhhccC
Q psy18006 21 TRHDIIHTCDIYEDIAIAYGYN 42 (180)
Q Consensus 21 ~R~DI~~~~DliEEIaR~~Gyd 42 (180)
-+.||.+-+++||+|-.+||.+
T Consensus 79 ~~~ei~~le~~ve~~kk~~g~~ 100 (102)
T PF11537_consen 79 KEEEIEDLEELVEELKKIYGVE 100 (102)
T ss_dssp TT---SSHHHHHHHHHHHCT--
T ss_pred ccccHhhHHHHHHHHHHHhCcc
Confidence 4668899999999999999975
No 107
>PRK14763 coenzyme PQQ biosynthesis protein A; Provisional
Probab=24.66 E-value=37 Score=18.69 Aligned_cols=8 Identities=13% Similarity=0.164 Sum_probs=6.5
Q ss_pred CccceEEe
Q psy18006 1 MCLQTKIL 8 (180)
Q Consensus 1 m~~~~~v~ 8 (180)
||+||||+
T Consensus 10 ~R~GfEvT 17 (26)
T PRK14763 10 MRFGFEVT 17 (26)
T ss_pred eeeeeEEE
Confidence 68899986
No 108
>TIGR00415 serS_MJ seryl-tRNA synthetase, Methanococcus jannaschii family. The seryl-tRNA synthetases from a few of the Archaea, represented by this model, are very different from the set of mutually more closely related seryl-tRNA synthetases from Eubacteria, Eukaryotes, and other Archaea. Although distantly homologous, the present set differs enough not to be recognized by the pfam model tRNA-synt_2b that recognizes the remainder of seryl-tRNA synthetases among oither class II amino-acyl tRNA synthetases.
Probab=24.53 E-value=1.3e+02 Score=28.19 Aligned_cols=79 Identities=16% Similarity=0.070 Sum_probs=49.4
Q ss_pred HCCCceeecccccChhHHHHHhccccCCC-CcEEee----------------------------CCcccchHHHHHhhHH
Q psy18006 73 QAGFTEVLTFALCSRDDVSVKLRQKMEFI-PAVHIG----------------------------NPKTLEFQIARTTLVP 123 (180)
Q Consensus 73 ~~Gf~Ev~tysl~s~~~~~~~~~~~~~~~-~~v~l~----------------------------NPis~e~~~lR~sLlp 123 (180)
..||+|++.-.|++.+.+ .+.+...... ....|. +.+.++.-+||++-=.
T Consensus 240 k~Gy~ev~fP~LIp~e~l-~k~ghl~gF~~e~y~Vt~~~~d~d~~~~f~~~~~~~~eipi~~L~~~le~~~~vL~PTSE~ 318 (520)
T TIGR00415 240 KIGFQECLFPKLIPLDIM-NKMRYLEGLPEGMYYCCAPKRDPELFEEFKNELIIKKEIPIDKLKNGIKDPGYVIAPAQCE 318 (520)
T ss_pred hcCCeEEeCCcEecHHHH-cccCCCCCCchhheEEecCCCCcchhhccccccccccccccccccccccCCceEEeCccHH
Confidence 459999999999999875 3344222111 222332 2224434568888777
Q ss_pred HHHHHHHHhh-CC-CCCcceEe-ecceEecCC
Q psy18006 124 GLLKTLAANK-KM-PLPLKLFE-ISDIVYKDA 152 (180)
Q Consensus 124 sLL~~l~~N~-~~-~~~~~iFE-iG~V~~~~~ 152 (180)
.+....+.-. .. ..|+++|. .|.||+...
T Consensus 319 ply~~~a~~Ils~~dLPlk~~~~s~~CFR~Ea 350 (520)
T TIGR00415 319 PFYQFFEGEVIDAEDKPIKFFDRSGWTYRWEA 350 (520)
T ss_pred HHHHHHhccccChhhCCeeEEEEecCeEeCCC
Confidence 7776665433 22 46899999 558998765
No 109
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=23.66 E-value=1.9e+02 Score=20.24 Aligned_cols=39 Identities=13% Similarity=0.233 Sum_probs=26.1
Q ss_pred EeecCCeEEEEcCCCCCCCCCchhhhhhhHhhhccCCCCCC
Q psy18006 7 ILGSGAEVSVSIPPTRHDIIHTCDIYEDIAIAYGYNNIPKT 47 (180)
Q Consensus 7 v~~~~~~~~v~vP~~R~DI~~~~DliEEIaR~~Gyd~i~~~ 47 (180)
+.=.|+.+.+.+|+ .--....||-+||++.+|++.|.-+
T Consensus 5 aty~~d~~rf~~~~--~~~~~~~~L~~ev~~rf~l~~f~lK 43 (81)
T cd06396 5 VTYNGESQSFLVSD--SENTTWASVEAMVKVSFGLNDIQIK 43 (81)
T ss_pred EEECCeEEEEEecC--CCCCCHHHHHHHHHHHhCCCcceeE
Confidence 33356666666655 1134579999999999999955433
No 110
>cd01178 IPT_NFAT IPT domain of the NFAT family of transcription factors. NFAT transcription complexes are a target of calcineurin, a calcium dependent phosphatase, and activate genes mainly involved in cell-cell-interaction.
Probab=22.27 E-value=54 Score=24.02 Aligned_cols=24 Identities=13% Similarity=0.318 Sum_probs=18.4
Q ss_pred CeEEEEcCCCC-CCCCCchhhhhhh
Q psy18006 12 AEVSVSIPPTR-HDIIHTCDIYEDI 35 (180)
Q Consensus 12 ~~~~v~vP~~R-~DI~~~~DliEEI 35 (180)
..+.+.+|+|| .+|++++.+==.+
T Consensus 60 ~aIvf~tPpY~~~~I~~pV~V~~~l 84 (101)
T cd01178 60 NHLVVEVPPYHNKHVAAPVQVQFYV 84 (101)
T ss_pred eeEEEecCCCCCCCcCCceEEEEEE
Confidence 35889999999 5999988763333
No 111
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=22.15 E-value=82 Score=19.26 Aligned_cols=16 Identities=6% Similarity=0.262 Sum_probs=11.9
Q ss_pred HHHHHHHHHHCCCcee
Q psy18006 64 SDQLRGDIAQAGFTEV 79 (180)
Q Consensus 64 ~~~ir~~L~~~Gf~Ev 79 (180)
.+.+...|.++||.+.
T Consensus 3 ~~d~~~AL~~LGy~~~ 18 (47)
T PF07499_consen 3 LEDALEALISLGYSKA 18 (47)
T ss_dssp HHHHHHHHHHTTS-HH
T ss_pred HHHHHHHHHHcCCCHH
Confidence 4567888999999874
No 112
>COG0442 ProS Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=22.08 E-value=2.3e+02 Score=26.54 Aligned_cols=91 Identities=18% Similarity=0.214 Sum_probs=51.8
Q ss_pred hhhHHHHHHHHHHHHCCCceeecccccChhHHHHHhccccC-CCCcEEeeCCcccchHHHHHh---hHHHHHHHHHHhhC
Q psy18006 59 PLNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKME-FIPAVHIGNPKTLEFQIARTT---LVPGLLKTLAANKK 134 (180)
Q Consensus 59 ~~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~~~~~-~~~~v~l~NPis~e~~~lR~s---LlpsLL~~l~~N~~ 134 (180)
-..+..+.||+.|-..|.+|++--.|++ .++.+.-+.... ..+..+|.+=- .+-=+||+| ++-.+.+.-... +
T Consensus 49 v~~kI~~iir~em~~~G~~Evl~P~L~p-~eLwkEs~r~~~f~~El~~v~drg-~~~l~L~PTsEe~it~~~~~~i~S-Y 125 (500)
T COG0442 49 VLEKIENIIREEMDKIGAQEVLFPTLIP-AELWKESGRWEGFGPELFRVKDRG-DRPLALRPTSEEVITDMFRKWIRS-Y 125 (500)
T ss_pred HHHHHHHHHHHHHHhcCceEEechhcCH-HHHHHHhChhhhcchhhEEEEccC-CceeeeCCCcHHHHHHHHHHHhhh-h
Confidence 3446678889999999999998777777 555544432111 12334444322 222234433 222222222111 2
Q ss_pred CCCCcceEeecceEecCC
Q psy18006 135 MPLPLKLFEISDIVYKDA 152 (180)
Q Consensus 135 ~~~~~~iFEiG~V~~~~~ 152 (180)
+..|++++-|..+|+-..
T Consensus 126 kdLPl~lYQi~~kfRdE~ 143 (500)
T COG0442 126 KDLPLKLYQIQSKFRDEK 143 (500)
T ss_pred hhCCcceeeeeeEEeccc
Confidence 468999999999997543
No 113
>COG3200 AroG 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=20.74 E-value=46 Score=29.93 Aligned_cols=20 Identities=30% Similarity=0.547 Sum_probs=15.9
Q ss_pred EEEcCCCCCCCCCchhhhhh
Q psy18006 15 SVSIPPTRHDIIHTCDIYED 34 (180)
Q Consensus 15 ~v~vP~~R~DI~~~~DliEE 34 (180)
.|+.|+||.||..-++.=|+
T Consensus 126 ~vtLpsYRGDiiNG~e~~~~ 145 (445)
T COG3200 126 GVTLPSYRGDIINGIEFDAE 145 (445)
T ss_pred CeeccccccccccCccCChh
Confidence 48899999999987665544
No 114
>PF02027 RolB_RolC: RolB/RolC glucosidase family; InterPro: IPR006064 These enzymes correspond to Agrobacterium rolC and were characterised along with rolB. RolB and rolC were originally classified as glycoside hydrolase family 40 and 41 respectively. RolB has subsequently been shown [] to have tyrosine phosphatase activity. ; PDB: 3AQ2_B 3AQ3_C.
Probab=20.44 E-value=47 Score=26.47 Aligned_cols=17 Identities=29% Similarity=0.577 Sum_probs=11.3
Q ss_pred CCeEEEEcCCCCCCCCC
Q psy18006 11 GAEVSVSIPPTRHDIIH 27 (180)
Q Consensus 11 ~~~~~v~vP~~R~DI~~ 27 (180)
++.+-.++|+||.||+.
T Consensus 95 ~g~vattlpPY~~dvs~ 111 (185)
T PF02027_consen 95 SGLVATTLPPYREDVSL 111 (185)
T ss_dssp TBEEEESS-TTSS-H--
T ss_pred CCEEEEcCCCcccChHH
Confidence 45688999999999987
Done!