Query psy18006
Match_columns 180
No_of_seqs 116 out of 1028
Neff 6.7
Searched_HMMs 29240
Date Fri Aug 16 19:54:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy18006.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/18006hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l4g_B Phenylalanyl-tRNA synth 100.0 4.5E-44 1.5E-48 328.8 13.0 164 2-165 333-505 (589)
2 3pco_B Phenylalanyl-tRNA synth 100.0 5.3E-44 1.8E-48 337.4 10.0 170 2-175 432-610 (795)
3 2rhq_B Phenylalanyl-tRNA synth 100.0 2.2E-42 7.5E-47 326.6 9.7 167 2-172 435-611 (795)
4 1b7y_B Phers, protein (phenyla 100.0 4.2E-42 1.4E-46 324.1 10.1 164 2-171 430-599 (785)
5 3ica_A Phenylalanyl-tRNA synth 99.9 2.4E-29 8.2E-34 204.5 2.3 115 59-175 5-133 (213)
6 3ig2_A Phenylalanyl-tRNA synth 99.9 3.3E-29 1.1E-33 203.7 2.8 115 58-174 4-132 (213)
7 2du3_A O-phosphoseryl-tRNA syn 99.9 2.1E-27 7.2E-32 215.2 1.9 142 21-164 12-239 (534)
8 2rhq_A Phenylalanyl-tRNA synth 99.9 1.9E-26 6.6E-31 195.7 6.0 131 27-164 21-165 (294)
9 1b7y_A Phers, protein (phenyla 99.6 7.3E-16 2.5E-20 133.7 5.7 121 40-164 82-226 (350)
10 2du7_A O-phosphoseryl-tRNA syn 99.5 5.2E-15 1.8E-19 134.4 5.6 127 35-164 36-251 (549)
11 3l4g_A Phenylalanyl-tRNA synth 99.5 5.1E-14 1.7E-18 127.1 7.0 124 37-164 208-380 (508)
12 3qtc_A Pyrrolysyl-tRNA synthet 99.5 7.5E-14 2.6E-18 117.6 7.4 103 54-165 73-189 (290)
13 2odr_B Phosphoseryl-tRNA synth 99.5 4.7E-14 1.6E-18 129.5 6.5 122 43-164 49-258 (648)
14 2odr_A Phosphoseryl-tRNA synth 99.5 5.1E-14 1.8E-18 129.4 6.6 122 43-164 49-258 (665)
15 2odr_D Phosphoseryl-tRNA synth 99.5 5.5E-14 1.9E-18 129.4 6.6 122 43-164 49-258 (685)
16 2odr_C Phosphoseryl-tRNA synth 99.5 5.9E-14 2E-18 129.5 6.8 122 43-164 49-258 (701)
17 3dsq_A Pyrrolysyl-tRNA synthet 99.4 7.9E-14 2.7E-18 117.9 4.8 111 53-166 66-184 (288)
18 3pco_A Phenylalanyl-tRNA synth 99.4 5.6E-14 1.9E-18 120.9 1.9 107 40-154 88-200 (327)
19 3cmq_A Phenylalanyl-tRNA synth 98.9 3.2E-10 1.1E-14 100.3 3.7 122 41-172 27-195 (415)
20 3net_A Histidyl-tRNA synthetas 96.9 0.00067 2.3E-08 60.2 4.2 110 39-151 5-133 (465)
21 1z7m_A ATP phosphoribosyltrans 96.8 0.0014 4.7E-08 56.1 5.1 90 59-151 38-130 (344)
22 3rac_A Histidine-tRNA ligase; 96.7 0.0014 4.7E-08 56.8 4.9 90 59-151 39-130 (373)
23 1h4v_B Histidyl-tRNA synthetas 96.6 0.0034 1.2E-07 54.4 6.8 92 59-151 19-114 (421)
24 3od1_A ATP phosphoribosyltrans 96.6 0.0021 7.3E-08 56.1 5.3 89 60-151 27-116 (400)
25 1wu7_A Histidyl-tRNA synthetas 96.4 0.0017 5.8E-08 56.7 3.2 90 59-151 22-112 (434)
26 1htt_A Histidyl-tRNA synthetas 96.4 0.0025 8.5E-08 55.3 4.2 92 59-151 20-114 (423)
27 4e51_A Histidine--tRNA ligase; 96.1 0.0049 1.7E-07 54.7 4.5 92 60-151 49-143 (467)
28 3lc0_A Histidyl-tRNA synthetas 95.8 0.0034 1.2E-07 55.7 2.2 90 60-151 46-136 (456)
29 4g84_A Histidine--tRNA ligase, 95.7 0.0064 2.2E-07 53.2 3.4 88 59-151 30-117 (464)
30 1qe0_A Histidyl-tRNA synthetas 95.4 0.0047 1.6E-07 53.4 1.7 91 59-151 18-114 (420)
31 4g85_A Histidine-tRNA ligase, 95.4 0.0085 2.9E-07 53.6 3.3 87 60-151 84-170 (517)
32 2i4l_A Proline-tRNA ligase; al 95.4 0.015 5.2E-07 51.3 4.8 90 59-151 69-162 (458)
33 3a32_A Probable threonyl-tRNA 94.9 0.013 4.5E-07 51.8 3.1 91 59-152 51-147 (471)
34 1nyr_A Threonyl-tRNA synthetas 94.9 0.012 4.1E-07 54.2 2.8 93 59-153 273-369 (645)
35 2j3l_A Prolyl-tRNA synthetase; 94.7 0.027 9.1E-07 50.9 4.6 92 59-152 49-143 (572)
36 1evl_A Threonyl-tRNA synthetas 94.2 0.0087 3E-07 51.7 0.1 91 59-152 32-125 (401)
37 1nj8_A Proline-tRNA synthetase 93.5 0.048 1.6E-06 48.2 3.6 95 59-153 40-140 (459)
38 1hc7_A Prolyl-tRNA synthetase; 93.1 0.051 1.7E-06 48.4 3.1 94 59-152 46-145 (477)
39 1qf6_A THRRS, threonyl-tRNA sy 92.5 0.026 8.8E-07 52.0 0.4 92 59-153 273-367 (642)
40 3uh0_A Threonyl-tRNA synthetas 91.9 0.095 3.2E-06 46.4 3.2 93 59-152 66-163 (460)
41 1usy_A ATP phosphoribosyltrans 91.5 0.04 1.4E-06 45.4 0.4 75 63-152 6-84 (275)
42 2dq3_A Seryl-tRNA synthetase; 90.9 0.095 3.2E-06 46.0 2.2 88 60-152 175-265 (425)
43 1ses_A Seryl-tRNA synthetase; 89.2 0.13 4.3E-06 45.2 1.6 88 60-152 169-259 (421)
44 1nj1_A PROR, proline-tRNA synt 88.2 0.27 9.3E-06 43.9 3.0 92 60-153 74-172 (501)
45 3err_A Fusion protein of micro 87.2 0.33 1.1E-05 43.9 3.0 88 60-152 278-368 (536)
46 3ial_A Prolyl-tRNA synthetase; 86.8 0.16 5.3E-06 45.9 0.6 95 59-153 57-157 (518)
47 4hvc_A Bifunctional glutamate/ 86.0 0.35 1.2E-05 43.6 2.4 93 59-152 63-162 (519)
48 1wle_A Seryl-tRNA synthetase; 85.8 0.81 2.8E-05 41.0 4.7 92 60-153 222-317 (501)
49 2dq0_A Seryl-tRNA synthetase; 84.4 0.19 6.3E-06 44.6 -0.1 88 60-152 196-286 (455)
50 3vbb_A Seryl-tRNA synthetase, 84.0 0.59 2E-05 42.2 3.0 92 60-152 204-305 (522)
51 3lss_A Seryl-tRNA synthetase; 83.0 0.4 1.4E-05 43.0 1.4 89 60-152 211-303 (484)
52 2zt5_A Glycyl-tRNA synthetase; 81.4 0.96 3.3E-05 42.1 3.4 41 112-153 237-281 (693)
53 3qne_A Seryl-tRNA synthetase, 75.5 1.3 4.3E-05 39.7 2.2 88 60-152 188-282 (485)
54 1n9w_A Aspartyl-tRNA synthetas 68.4 5.1 0.00017 34.9 4.4 76 62-153 130-205 (422)
55 1ati_A Glycyl-tRNA synthetase; 68.2 2.3 8E-05 37.8 2.2 61 29-89 5-73 (505)
56 1wyd_A Hypothetical aspartyl-t 66.9 4.2 0.00014 35.6 3.6 26 62-87 139-164 (429)
57 3bju_A Lysyl-tRNA synthetase; 55.3 15 0.00052 32.8 5.2 78 63-153 182-259 (521)
58 3i7f_A Aspartyl-tRNA synthetas 52.7 10 0.00034 34.4 3.5 77 62-153 249-325 (548)
59 2cja_A Seryl-tRNA synthetase; 51.6 2.5 8.4E-05 38.1 -0.7 90 61-151 235-358 (522)
60 4ex5_A Lysine--tRNA ligase; st 51.2 17 0.00058 32.7 4.8 77 63-152 210-286 (529)
61 4ah6_A Aspartate--tRNA ligase, 41.5 19 0.00066 33.0 3.6 25 63-87 154-179 (617)
62 1kn6_A Prohormone convertase 1 40.5 13 0.00045 25.5 1.8 31 12-49 13-43 (90)
63 2bnk_A Early protein GP16.7; D 33.4 15 0.00053 23.4 1.1 13 24-36 20-32 (67)
64 2hiy_A Hypothetical protein; C 32.9 18 0.00063 27.7 1.8 20 64-83 24-43 (183)
65 3qxb_A Putative xylose isomera 31.5 35 0.0012 27.2 3.3 65 13-77 21-85 (316)
66 3l4g_B Phenylalanyl-tRNA synth 28.8 28 0.00097 31.4 2.5 28 13-40 62-89 (589)
67 3mf2_A BLL0957 protein; aminoa 26.9 13 0.00044 31.8 -0.1 91 61-153 68-183 (346)
68 2yrp_A Nuclear factor of activ 25.7 30 0.001 24.8 1.7 20 12-31 67-87 (114)
69 1u36_A DNA-binding, nuclear fa 23.3 36 0.0012 24.0 1.7 20 12-31 63-83 (106)
70 2lxr_A NADH dehydrogenase I su 22.2 38 0.0013 22.5 1.5 34 114-147 6-40 (76)
71 1nnh_A Asparaginyl-tRNA synthe 20.3 68 0.0023 26.1 3.1 28 60-87 18-45 (294)
No 1
>3l4g_B Phenylalanyl-tRNA synthetase beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=100.00 E-value=4.5e-44 Score=328.83 Aligned_cols=164 Identities=59% Similarity=0.875 Sum_probs=143.4
Q ss_pred ccceEEee--cCCeEEEEcCCCCCCCCCchhhhhhhHhhhccCCCCCCCCCcccccCCChhhHHHHHHHHHHHHCCCcee
Q psy18006 2 CLQTKILG--SGAEVSVSIPPTRHDIIHTCDIYEDIAIAYGYNNIPKTMPRFASIARQVPLNKLSDQLRGDIAQAGFTEV 79 (180)
Q Consensus 2 ~~~~~v~~--~~~~~~v~vP~~R~DI~~~~DliEEIaR~~Gyd~i~~~~p~~~~~~~~~~~~~~~~~ir~~L~~~Gf~Ev 79 (180)
++||++.. +++.|.|+||+||.||++++||||||||+|||||||.++|.....+..++.+++.+++|+.|+++||+|+
T Consensus 333 ~Lgf~~~~~~~~~~~~V~vPs~R~DI~~e~DLiEEVaRiyGYdnIp~tlP~~~~~g~~~~~~~~~~~ir~~l~~~Gf~Ev 412 (589)
T 3l4g_B 333 RMYLKSEVIGDGNQIEIEIPPTRADIIHACDIVEDAAIAYGYNNIQMTLPKTYTIANQFPLNKLTELLRHDMAAAGFTEA 412 (589)
T ss_dssp HTTCEEEECSSSSEEEEEECSSCTTCCSHHHHHHHHHHHHCGGGSCCCCCCCCCCCCCCHHHHHHHHHHHHHHHTTCEEC
T ss_pred HCCCeEEEcCCCceEEEECCCCccccCCccHHHHHHHHHhCcccCCCcCCCccccCCCCHHHHHHHHHHHHHHHCCCEEE
Confidence 45666653 3557999999999999999999999999999999999999876677788999999999999999999999
Q ss_pred ecccccChhHHHHHhccccCCCCcEEeeCCcccchHHHHHhhHHHHHHHHHHhhCCCCCcceEeecceEecCCC------
Q psy18006 80 LTFALCSRDDVSVKLRQKMEFIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKKMPLPLKLFEISDIVYKDAT------ 153 (180)
Q Consensus 80 ~tysl~s~~~~~~~~~~~~~~~~~v~l~NPis~e~~~lR~sLlpsLL~~l~~N~~~~~~~~iFEiG~V~~~~~~------ 153 (180)
+||+|++++..++.|+++.+..+.|+|.||+|+|+++||+||+||||+++++|++++.++++||+|+||.++++
T Consensus 413 itysf~s~~~~~~~l~~~~~~~~~v~L~NPis~e~svmRtsLlpgLL~~l~~N~~~~~~vrlFEiG~Vf~~d~~~~~~~~ 492 (589)
T 3l4g_B 413 LTFALCSQEDIADKLGVDISATKAVHISNPKTAEFQVARTTLLPGLLKTIAANRKMPLPLKLFEISDIVIKDSNTDVGAK 492 (589)
T ss_dssp CCCSEECHHHHTGGGTSCTTSSCCCBBSSCSSGGGSEECSCSHHHHHHHHHHTTTSCSCEEEEEEEEEEEECTTSTTSEE
T ss_pred ecCcccCHHHHHHHhCCCCCCCCeEEEcCCCchhHhHHHHHHHHHHHHHHHHHhcCCCceEEEEeeeEEecCCccccCCc
Confidence 99999999865566776543346899999999999999999999999999999887668999999999987653
Q ss_pred -cceeeeecCCCC
Q psy18006 154 -AGTLMFTPGGNR 165 (180)
Q Consensus 154 -~~~l~~~~~G~~ 165 (180)
..+|+++++|+.
T Consensus 493 e~~~la~~~~g~~ 505 (589)
T 3l4g_B 493 NYRHLCAVYYNKN 505 (589)
T ss_dssp EEEEEEEEEESSS
T ss_pred cccEEEEEEECCC
Confidence 348999999975
No 2
>3pco_B Phenylalanyl-tRNA synthetase, beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli}
Probab=100.00 E-value=5.3e-44 Score=337.42 Aligned_cols=170 Identities=22% Similarity=0.271 Sum_probs=147.1
Q ss_pred ccceEEeecCCeEEEEcCCCCCCCCCchhhhhhhHhhhccCCCCCCCCCcccc-cCCChhhHHHHHHHHHHHHCCCceee
Q psy18006 2 CLQTKILGSGAEVSVSIPPTRHDIIHTCDIYEDIAIAYGYNNIPKTMPRFASI-ARQVPLNKLSDQLRGDIAQAGFTEVL 80 (180)
Q Consensus 2 ~~~~~v~~~~~~~~v~vP~~R~DI~~~~DliEEIaR~~Gyd~i~~~~p~~~~~-~~~~~~~~~~~~ir~~L~~~Gf~Ev~ 80 (180)
++||++..+++.|.|+||+||.||++++||||||||+|||||||+++|..... +.....+.+.+++|+.|+++||+|++
T Consensus 432 ~Lgf~v~~~~~~~~V~vPs~R~DI~~e~DliEEVaRiyGydnIp~~~p~~~~~~~~~~~~~~~~~~~r~~l~~~G~~Evi 511 (795)
T 3pco_B 432 RLGCEVTEGKDEWQAVAPSWRFDMEIEEDLVEEVARVYGYNNIPDEPVQASLIMGTHREADLSLKRVKTLLNDKGYQEVI 511 (795)
T ss_dssp HHTCEEEEETTEEEEECCSSCSSCSSHHHHHHHHHHHHCGGGSCCCCCEEECCCCCCCTTBCCHHHHHHHHHHTTCEECC
T ss_pred HCCCeEEeCCceEEEECCCCccccCCccHHHHHHHHHhCcccCCccCCCccccCCCCCHHHHHHHHHHHHHHHCCCeeee
Confidence 47888875567799999999999999999999999999999999999975443 34455666789999999999999999
Q ss_pred cccccChhHHHHHhccccCCCCcEEeeCCcccchHHHHHhhHHHHHHHHHHhhCC-CCCcceEeecceEecCCC------
Q psy18006 81 TFALCSRDDVSVKLRQKMEFIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKKM-PLPLKLFEISDIVYKDAT------ 153 (180)
Q Consensus 81 tysl~s~~~~~~~~~~~~~~~~~v~l~NPis~e~~~lR~sLlpsLL~~l~~N~~~-~~~~~iFEiG~V~~~~~~------ 153 (180)
||||+|++.+ +.|+ + ..+.|+|.||+|+|+++||+||+||||+++++|+++ ..++++||+|+||.++++
T Consensus 512 tysf~~~~~~-~~~~-~--~~~~v~l~NPis~e~svmRtsLlpgLL~~~~~N~~r~~~~v~lFEiG~Vf~~~~~~~~~~~ 587 (795)
T 3pco_B 512 TYSFVDPKVQ-QMIH-P--GVEALLLPSPISVEMSAMRLSLWTGLLATVVYNQNRQQNRVRIFESGLRFVPDTQAPLGIR 587 (795)
T ss_dssp CCSEECHHHH-HHHS-S--SCCCCBCSSCSCSTTCEECSSSHHHHHHHHHHHHTSSCCCCEEEEEEEEEEECTTSSTTEE
T ss_pred ccCcCCHHHH-HhhC-C--CCCeEEEcCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCccEEEeeeEEecCCCcccCcc
Confidence 9999999974 5565 2 246799999999999999999999999999999997 467999999999987643
Q ss_pred -cceeeeecCCCCCccchhhhcc
Q psy18006 154 -AGTLMFTPGGNRTRDLAISRQT 175 (180)
Q Consensus 154 -~~~l~~~~~G~~~~~~w~~~~~ 175 (180)
..+||++++|++.+.+|....+
T Consensus 588 e~~~la~~~~G~~~~~~w~~~~~ 610 (795)
T 3pco_B 588 QDLMLAGVICGNRYEEHWNLAKE 610 (795)
T ss_dssp EEEEEEEEEESBSSCSCSSSCCC
T ss_pred hhheEEEEEECCCcccccccCCC
Confidence 4699999999999999986443
No 3
>2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_B*
Probab=100.00 E-value=2.2e-42 Score=326.57 Aligned_cols=167 Identities=21% Similarity=0.331 Sum_probs=147.2
Q ss_pred ccceEEeecCCeEEEEcCCCCCCCCCchhhhhhhHhhhccCCCCCCCCC-c-ccccCCChhhHHHHHHHHHHHHCCCcee
Q psy18006 2 CLQTKILGSGAEVSVSIPPTRHDIIHTCDIYEDIAIAYGYNNIPKTMPR-F-ASIARQVPLNKLSDQLRGDIAQAGFTEV 79 (180)
Q Consensus 2 ~~~~~v~~~~~~~~v~vP~~R~DI~~~~DliEEIaR~~Gyd~i~~~~p~-~-~~~~~~~~~~~~~~~ir~~L~~~Gf~Ev 79 (180)
++||++..+++.|.|+||+||.||++++||||||||+|||||||.++|. . ...+..++.+++.+++|+.|+++||+|+
T Consensus 435 ~Lg~~v~~~~~~~~V~vPs~R~Di~~e~DliEEVaRiyGydnIp~tlP~~~~~~~g~~~~~~~~~~~ir~~L~~~Gf~Ev 514 (795)
T 2rhq_B 435 QLGFETTLKGETLTVNVPSRRKDITIKEDLIEEVARIYGYDEIPSSLPVFGEVTSGELTDRQHKTRTLKETLEGAGLNQA 514 (795)
T ss_dssp HTTCEEEEETTEEEEEEETTCTTCCSHHHHHHHHHHHHCTTTSCCCCCCCSSCCCCCCCHHHHHHHHHHHHHHHTTCEEC
T ss_pred HCCCeEEeCCceEEEECCCCccccCCccHHHHHHHHHhCcccCCccCCCccccCCCCCCHHHHHHHHHHHHHHHCCCEEE
Confidence 4788886556689999999999999999999999999999999999996 3 3567778899999999999999999999
Q ss_pred ecccccChhHHHHHhccccCCCC-cEEeeCCcccchHHHHHhhHHHHHHHHHHhhCC-CCCcceEeecceEecCC-----
Q psy18006 80 LTFALCSRDDVSVKLRQKMEFIP-AVHIGNPKTLEFQIARTTLVPGLLKTLAANKKM-PLPLKLFEISDIVYKDA----- 152 (180)
Q Consensus 80 ~tysl~s~~~~~~~~~~~~~~~~-~v~l~NPis~e~~~lR~sLlpsLL~~l~~N~~~-~~~~~iFEiG~V~~~~~----- 152 (180)
+||+|++++.. +.|+ + ... .++|.||+|+|+++||+||+||||+++++|+++ +.++++||+|+||.+++
T Consensus 515 itysfvs~~~~-~~l~-~--~~~~~v~L~NPis~e~svLRtsLlpgLL~~l~~N~~r~~~~vrlFEiG~Vf~~d~~~~~~ 590 (795)
T 2rhq_B 515 ITYSLVSKDHA-KDFA-L--QERPTISLLMPMSEAHATLRQSLLPHLIEATAYNVARKNKDVRLYEIGRVFFGNGEGELP 590 (795)
T ss_dssp CCCSEECTTTT-TTTC-S--SCCCCEECSSCSCTTSSEECSCSHHHHHHHHHHHHHTTCCCEEEEEEEEEEECCCTTSCC
T ss_pred ecCCccCHHHH-HhhC-C--CCCceEEEcCCCchhhhhhhhccHHHHHHHHHHHhcCCCCCeEEEEEeeEEecCCcccCc
Confidence 99999999875 5554 2 245 699999999999999999999999999999886 57899999999998643
Q ss_pred -CcceeeeecCCCCCccchhh
Q psy18006 153 -TAGTLMFTPGGNRTRDLAIS 172 (180)
Q Consensus 153 -~~~~l~~~~~G~~~~~~w~~ 172 (180)
+..+|+++++|+..+.+|+.
T Consensus 591 ~e~~~la~l~~G~~~~~~w~~ 611 (795)
T 2rhq_B 591 DEVEYLSGILTGEYVVNAWQG 611 (795)
T ss_dssp EEEEEEEEEEESEEEEEGGGT
T ss_pred chhhEEEEEEEeccccccccC
Confidence 44699999999999999963
No 4
>1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1 d.58.13.1 d.104.1.1 PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B 2akw_B* 2aly_B* 2amc_B* 3hfz_B* 3teh_B* 2iy5_B*
Probab=100.00 E-value=4.2e-42 Score=324.13 Aligned_cols=164 Identities=26% Similarity=0.349 Sum_probs=145.3
Q ss_pred ccceEEeecCCeEEEEcCCCCCCCCCchhhhhhhHhhhccCCCCCCCCCc---c-cccCCChhhHHHHHHHHHHHHCCCc
Q psy18006 2 CLQTKILGSGAEVSVSIPPTRHDIIHTCDIYEDIAIAYGYNNIPKTMPRF---A-SIARQVPLNKLSDQLRGDIAQAGFT 77 (180)
Q Consensus 2 ~~~~~v~~~~~~~~v~vP~~R~DI~~~~DliEEIaR~~Gyd~i~~~~p~~---~-~~~~~~~~~~~~~~ir~~L~~~Gf~ 77 (180)
++||++..+++.|.|+||+||.||++++||||||||+|||||||+++|.. . .. ..++.+++.+++|+.|+++||+
T Consensus 430 ~Lg~~v~~~~~~~~V~vPs~R~Di~~e~DliEEVaRiyGydnIp~~~p~~~~~~~~~-~~~~~~~~~~~ir~~L~~~Gf~ 508 (785)
T 1b7y_B 430 RLGCRVEGEGPTYRVTPPSHRLDLRLEEDLVEEVARIQGYETIPLALPAFFPAPDNR-GVEAPYRKEQRLREVLSGLGFQ 508 (785)
T ss_dssp HTTCEEESSSSSEEEECCTTCCSCCSHHHHHHHHHHHHCGGGSCCCCCCCCCCGGGS-STTHHHHHHHHHHHHHHHHTCE
T ss_pred HCCCeEEeCCceEEEECCCcccccCCccHHHHHHHHHhCcccCCccCCCcccccccc-cCCHHHHHHHHHHHHHHHCCCE
Confidence 57888865556799999999999999999999999999999999999865 3 34 6778899999999999999999
Q ss_pred eeecccccChhHHHHHhccccCCCCcEEeeCCcccchHHHHHhhHHHHHHHHHHhhCCC--CCcceEeecceEecCCCcc
Q psy18006 78 EVLTFALCSRDDVSVKLRQKMEFIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKKMP--LPLKLFEISDIVYKDATAG 155 (180)
Q Consensus 78 Ev~tysl~s~~~~~~~~~~~~~~~~~v~l~NPis~e~~~lR~sLlpsLL~~l~~N~~~~--~~~~iFEiG~V~~~~~~~~ 155 (180)
|++||||++++.. +.|.. ..+.++|.||+|+|+++||+||+||||+++++|++++ .++++||+|+||. +.+..
T Consensus 509 Evitysfvs~~~~-~~l~~---~~~~v~L~NPis~d~svLRtsLlpgLL~~l~~N~~r~~~~~vrlFEiG~Vf~-~~e~~ 583 (785)
T 1b7y_B 509 EVYTYSFMDPEDA-RRFRL---DPPRLLLLNPLAPEKAALRTHLFPGLVRVLKENLDLDRPERALLFEVGRVFR-EREET 583 (785)
T ss_dssp ECCCCSEECTTHH-HHTTC---CCCSCEESSCSSTTSSEECSCSHHHHHHHHHHHHHHSCCSCEEEEEEEEEES-SSEEE
T ss_pred EEecCcccCHHHH-HhcCC---CCCeEEEcCCCchhhhhhhhhhHHHHHHHHHHHhhcCCCCCeEEEEEeeeec-cChhh
Confidence 9999999999875 55532 2457999999999999999999999999999998754 7899999999998 45677
Q ss_pred eeeeecCCCCCccchh
Q psy18006 156 TLMFTPGGNRTRDLAI 171 (180)
Q Consensus 156 ~l~~~~~G~~~~~~w~ 171 (180)
+|+++++|+..+.+|.
T Consensus 584 ~lagl~~G~~~~~~w~ 599 (785)
T 1b7y_B 584 HLAGLLFGEGVGLPWA 599 (785)
T ss_dssp EEEEEEESSCBSCSSS
T ss_pred EEEEEEECCCcccccC
Confidence 9999999999999995
No 5
>3ica_A Phenylalanyl-tRNA synthetase beta chain; APC61692.1, phenylalanyl-tRNA SYNT beta subunit, structural genomics, PSI-2; HET: TAM; 2.44A {Porphyromonas gingivalis}
Probab=99.95 E-value=2.4e-29 Score=204.48 Aligned_cols=115 Identities=26% Similarity=0.242 Sum_probs=93.8
Q ss_pred hhhHHHHHHHHHHHHCCCceeecccccChhHHHHHhccccCCCCcEEeeCCcccchHHHHHhhHHHHHHHHHHhhCCC-C
Q psy18006 59 PLNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEFIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKKMP-L 137 (180)
Q Consensus 59 ~~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~~~~~~~~~v~l~NPis~e~~~lR~sLlpsLL~~l~~N~~~~-~ 137 (180)
..+++.++||+.|+++||+|++||||++++. ++.++.. .....|+|.||+|+|+++||+||+||||+++++|++++ .
T Consensus 5 ~~~~~~~~ir~~L~~~G~~Evitysf~s~~~-~~~~~~~-~~~~~v~l~NPls~e~~vmRtsLlpgLL~~~~~N~~r~~~ 82 (213)
T 3ica_A 5 RRYKWQTVVSEQLVGAGFNEILNNSLTAGSY-YEGLKSH-PREMAVELMNPLSQELNCMRQTLLFGGLETLSHNLRRKHL 82 (213)
T ss_dssp HHHHHHHHHHHHHHHTTCEECCCCSEEEGGG-GTTCSSS-CGGGCCBCSSBSCSSEEEECSSSHHHHHHHHHHHHTTTCS
T ss_pred HHHHHHHHHHHHHHHCCCceeeeccCCCHHH-Hhhhccc-CcCCeEEecCCccHHHHHHHHHhHHHHHHHHHHHHcCCCC
Confidence 4678999999999999999999999999985 4555432 12357999999999999999999999999999999875 4
Q ss_pred CcceEeecceEecCC-------------CcceeeeecCCCCCccchhhhcc
Q psy18006 138 PLKLFEISDIVYKDA-------------TAGTLMFTPGGNRTRDLAISRQT 175 (180)
Q Consensus 138 ~~~iFEiG~V~~~~~-------------~~~~l~~~~~G~~~~~~w~~~~~ 175 (180)
+++|||+|+||.+++ +..+||++++|++.+.+|....+
T Consensus 83 ~~~lFEiG~Vf~~~~~~~~~~~~~~~~~e~~~la~~~~G~~~~~~w~~~~~ 133 (213)
T 3ica_A 83 SLYLFEWGKCYRFHAAKRTDETPLAAYAEDDRLGIWICGQRVHNSWAHPEE 133 (213)
T ss_dssp EEEEEEEEEEEEEECCCC--CCSSCEEEEEEEEEEEEEEBCCC-----CCC
T ss_pred CeeEEEeeeEEecCCccccccccccccchhhEEEEEEeCCCCcccCCCCCC
Confidence 699999999998653 34589999999999999986543
No 6
>3ig2_A Phenylalanyl-tRNA synthetase beta chain; phers, MCSG, structural genomics, midwest center for structural GE protein structure initiative; HET: MSE; 2.09A {Bacteroides fragilis}
Probab=99.95 E-value=3.3e-29 Score=203.70 Aligned_cols=115 Identities=23% Similarity=0.214 Sum_probs=93.0
Q ss_pred ChhhHHHHHHHHHHHHCCCceeecccccChhHHHHHhccccCCCCcEEeeCCcccchHHHHHhhHHHHHHHHHHhhCC-C
Q psy18006 58 VPLNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEFIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKKM-P 136 (180)
Q Consensus 58 ~~~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~~~~~~~~~v~l~NPis~e~~~lR~sLlpsLL~~l~~N~~~-~ 136 (180)
+..+++.++||+.|+++||+|++||||++++. ++.++.. ...+.|+|.||+|+|+++||+||+||||+++++|+++ .
T Consensus 4 d~~~~~~~~ir~~l~~~G~~Evitysf~~~~~-~~~~~~~-~~~~~v~l~NPls~e~~vmRtsLlpgLL~~~~~N~~r~~ 81 (213)
T 3ig2_A 4 DKSNKLQNLVAEQLVGCGFNEILNNSLTRAAY-YDGLESY-PSKNLVMLLNPLSADLNCMRQTLLFGGLESIAHNANRKN 81 (213)
T ss_dssp CHHHHHHHHHHHHHHHTTCEECCCCSEECGGG-GTTCSSS-CGGGCEEBSSGGGCSCCEECSCSHHHHHHHHHHC-----
T ss_pred CHHHHHHHHHHHHHHHCCCeEEeccccCCHHH-HHhhccc-CcCCeEEEeCCcchhHHHHHHHhHHHHHHHHHHHhcCCC
Confidence 45678999999999999999999999999986 4555432 1235799999999999999999999999999999986 4
Q ss_pred CCcceEeecceEecCC-------------CcceeeeecCCCCCccchhhhc
Q psy18006 137 LPLKLFEISDIVYKDA-------------TAGTLMFTPGGNRTRDLAISRQ 174 (180)
Q Consensus 137 ~~~~iFEiG~V~~~~~-------------~~~~l~~~~~G~~~~~~w~~~~ 174 (180)
.+++|||+|+||.+++ +..+||++++|++.+.+|....
T Consensus 82 ~~v~lFEiG~Vf~~~~~~~~~~~~~~~~~e~~~la~~~~G~~~~~~w~~~~ 132 (213)
T 3ig2_A 82 ADLKFFEFGNCYHFDAEKKNPEKVLAPYSEDYHLGLWVTGKMVSNSWAHAD 132 (213)
T ss_dssp -CCEEEEEEEEEEECC----------CEEEEEEEEEEEEEEECCSCC----
T ss_pred CCeeEEEeeeEEecCcccccccccccccchhHEEEEEEECCCccccCCCCC
Confidence 5799999999998764 3458999999999999998643
No 7
>2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB: 2du4_A 2du5_A* 2du6_A*
Probab=99.93 E-value=2.1e-27 Score=215.23 Aligned_cols=142 Identities=20% Similarity=0.177 Sum_probs=116.7
Q ss_pred CCCCCCCchhhhhhhHhhhccCCCCCCCCCcccccCCChhhHHHHHHHHHHHHCCCceeecccccChhH---HH------
Q psy18006 21 TRHDIIHTCDIYEDIAIAYGYNNIPKTMPRFASIARQVPLNKLSDQLRGDIAQAGFTEVLTFALCSRDD---VS------ 91 (180)
Q Consensus 21 ~R~DI~~~~DliEEIaR~~Gyd~i~~~~p~~~~~~~~~~~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~---~~------ 91 (180)
-|.||++++|++|||||+||||++++.+ ....+..++.+++.++||++|+++||+|++||+|+++.. ..
T Consensus 12 tR~Di~~~~DliEEvaR~yGyd~i~~~~--~~~~g~~hp~~~~~~~Ir~~l~~lGF~Ev~~~s~~s~~~n~p~~~Hpar~ 89 (534)
T 2du3_A 12 AEKDFEAAWKAGKEILAERSPNELYPRV--GFSFGKEHPLFATIQRLREAYLSIGFSEVVNPLIVEDVHVKKQFGREALA 89 (534)
T ss_dssp HHHCHHHHHHHGGGGSCCCCGGGSTTSS--CCCCCCCCHHHHHHHHHHHHHHHTTCEECCCCCEEETHHHHHHHGGGHHH
T ss_pred ChhhcchhhHHHhhhhhccCCCCCCCcc--CCCCCCCCHHHHHHHHHHHHHHHCCCEEEeCceEeChhhcccccccchhh
Confidence 4789999999999999999999999887 234667889999999999999999999999999999975 21
Q ss_pred --H-Hhcccc-------------------------------------------CC-------------CCcEEeeCCccc
Q psy18006 92 --V-KLRQKM-------------------------------------------EF-------------IPAVHIGNPKTL 112 (180)
Q Consensus 92 --~-~~~~~~-------------------------------------------~~-------------~~~v~l~NPis~ 112 (180)
+ .|.+.. +. ...++++||+|+
T Consensus 90 ~~Dr~fyl~~~~~~~~g~~~~~~e~I~~~~G~~l~~~~l~~~~~~y~~~~~~~~~~~~~v~~vh~~fds~~v~l~NPis~ 169 (534)
T 2du3_A 90 VLDRCFYLATLPKPNVGISAEKIRQIEAITKREVDSKPLQEIFHRYKKGEIDGDDLSYLIAEVLDVDDITAVKILDEVFP 169 (534)
T ss_dssp HHTTSCEEEECCCCCTTGGGTTTTTTSCCCCSSCCCSCTTTTTTHHHHSCCSGGGTTTTTTSSSCSGGGSHHHHHHTTCT
T ss_pred hccceeeccCcccccccccchhhhhhhhhccccchhhhhhhhhhhhhccccccccccccccchhcccccceeeecCCCCh
Confidence 1 121110 00 012789999999
Q ss_pred c---------hHHHHHhhHHHHHHHHHHhhCC-CCCcceEeecceEecCC--------CcceeeeecCCC
Q psy18006 113 E---------FQIARTTLVPGLLKTLAANKKM-PLPLKLFEISDIVYKDA--------TAGTLMFTPGGN 164 (180)
Q Consensus 113 e---------~~~lR~sLlpsLL~~l~~N~~~-~~~~~iFEiG~V~~~~~--------~~~~l~~~~~G~ 164 (180)
| +++||+||+||||+++++|+++ +.++++||+|+||..+. +..+++++++|.
T Consensus 170 e~~~~~~~~~~svLRTsLlPgLL~~lr~N~~r~~~pvrLFEIG~VFr~d~~~d~th~~Ef~qLagli~G~ 239 (534)
T 2du3_A 170 EFKELKPISSTLTLRSHMTTGWFITLSHIADKLPLPIKLFSIDRCFRREQGEDATRLYTYFSASCVLVDE 239 (534)
T ss_dssp TTTTCCCEEEEEEECSSHHHHHHHHHHTTTTTSCSSEEEEEEEEEECCCTTCSSSCCSEEEEEEEEEECS
T ss_pred hhccccccccccccCccchhhHHHHHHHHHhCCCCCeeEEEEeeEEecCccccccccceeeEEEEEEECC
Confidence 9 7999999999999999999876 57899999999998653 224899999997
No 8
>2rhq_A Phenylalanyl-tRNA synthetase alpha chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_A*
Probab=99.93 E-value=1.9e-26 Score=195.73 Aligned_cols=131 Identities=15% Similarity=0.126 Sum_probs=103.1
Q ss_pred CchhhhhhhHhhhccCCCCCCCCCc-ccccCCChhhHHHHHHHHHHHHCCCceeecccccChhHH-HHHhccccCC----
Q psy18006 27 HTCDIYEDIAIAYGYNNIPKTMPRF-ASIARQVPLNKLSDQLRGDIAQAGFTEVLTFALCSRDDV-SVKLRQKMEF---- 100 (180)
Q Consensus 27 ~~~DliEEIaR~~Gyd~i~~~~p~~-~~~~~~~~~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~-~~~~~~~~~~---- 100 (180)
-++||||||||+||||+||.++|.. ...+..++.+++.++||++|+++||+|+ +|+|++++.. ++.++++.+.
T Consensus 21 ~~~DliEEv~R~~gyd~i~~tlp~~~~~~g~~~~~~~~~~~iR~~l~~~Gf~Ev-~~s~l~~~~~nf~~l~~~~~~par~ 99 (294)
T 2rhq_A 21 MGTELMEKLNQQLAEETIDVTLPSRQISIGSKHPLTRTVEEIEDLFLGLGYEIV-DGYEVEQDYYNFEALNLPKSHPARD 99 (294)
T ss_dssp ----CTTHHHHHTTTTCCCTTSCCCCCCCCCCCHHHHHHHHHHHHHHTTTCEEC-CCCSEEEHHHHTGGGTCCTTCGGGC
T ss_pred CcchHHHHHHHHhCcccCCccCCCcccCCCCCCHHHHHHHHHHHHHHHCCCEEE-cCcceeeehhhHHhhCCCCCccccc
Confidence 4779999999999999999998854 3467778999999999999999999999 9999998642 2334333211
Q ss_pred -CCcEEeeCCcccchHHHHHhhHHHHHHHHHHhhCCCCCcceEeecceEecCC-------CcceeeeecCCC
Q psy18006 101 -IPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKKMPLPLKLFEISDIVYKDA-------TAGTLMFTPGGN 164 (180)
Q Consensus 101 -~~~v~l~NPis~e~~~lR~sLlpsLL~~l~~N~~~~~~~~iFEiG~V~~~~~-------~~~~l~~~~~G~ 164 (180)
.+.+.|. |+++||+|++|+|++++++|+ ++.++++||+|+||.+++ +..+|+++++|+
T Consensus 100 ~~d~~~l~-----e~~vLRtsl~p~ll~~l~~N~-~~~~~riFEiG~Vfr~d~~d~~h~~Ef~~Le~~~~g~ 165 (294)
T 2rhq_A 100 MQDSFYIT-----DEILMRTHTSPVQARTMEKRN-GQGPVKIICPGKVYRRDSDDATHSHQFTQIEGLVVDK 165 (294)
T ss_dssp TTTSCBSS-----SSEEECSSSHHHHHHHHHHTT-TCSCEEEEEEEEEECCCCCBTTBCSEEEEEEEEEEES
T ss_pred cCCcEEEc-----CcceeeccCHHHHHHHHHhcC-CCCCccEEEEcCEEecCCCCCCCCChhhEEEEEEECC
Confidence 1145553 899999999999999999998 456899999999998653 335889999986
No 9
>1b7y_A Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: d.104.1.1 PDB: 1b70_A* 1eiy_A 1jjc_A* 1pys_A 2iy5_A* 3hfz_A* 3teh_A* 2aly_A* 2akw_A* 2amc_A*
Probab=99.59 E-value=7.3e-16 Score=133.72 Aligned_cols=121 Identities=11% Similarity=0.043 Sum_probs=94.0
Q ss_pred ccCCCCCCCCCcc-cccCCChhhHHHHHHHHHHHHCCCceeecccccChhH-HHHHhccccC-----CCCcEEeeCCcc-
Q psy18006 40 GYNNIPKTMPRFA-SIARQVPLNKLSDQLRGDIAQAGFTEVLTFALCSRDD-VSVKLRQKME-----FIPAVHIGNPKT- 111 (180)
Q Consensus 40 Gyd~i~~~~p~~~-~~~~~~~~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~-~~~~~~~~~~-----~~~~v~l~NPis- 111 (180)
-=++|+.++|... ..+..++.+++.+.||++|+++||+|+. |+++..+. .++.++++.+ ..+.+.|.||+|
T Consensus 82 ~~~~i~~tlP~~~~~~g~~hp~~~~~~~Ir~~f~~~Gf~Ev~-~p~v~~~~~nfd~L~~p~~hpar~~~dt~~l~nP~s~ 160 (350)
T 1b7y_A 82 ERERVDVSLPGASLFSGGLHPITLMERELVEIFRALGYQAVE-GPEVESEFFNFDALNIPEHHPARDMWDTFWLTGEGFR 160 (350)
T ss_dssp ----CCTTSCCCCCCCCBCCHHHHHHHHHHHHHHTTTCEECC-CCSEEEHHHHTTTTTCCSSSTTTTSSCCCBEECSSCC
T ss_pred hhCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEE-CcchhcchhHHHhhCCCCCCccccccccEEEcCcccc
Confidence 3468898888543 4677889999999999999999999999 89997764 2244544321 034689999999
Q ss_pred ---------cchHHHHHhhHHHHHHHHHHhhCCCCCcceEeecceEecCC-C------cceeeeecCCC
Q psy18006 112 ---------LEFQIARTTLVPGLLKTLAANKKMPLPLKLFEISDIVYKDA-T------AGTLMFTPGGN 164 (180)
Q Consensus 112 ---------~e~~~lR~sLlpsLL~~l~~N~~~~~~~~iFEiG~V~~~~~-~------~~~l~~~~~G~ 164 (180)
++.++||+|++|+++++++++ ..++++||+|+||..++ + -.+|+++++|+
T Consensus 161 ~~~~~~~~~~~~~vLRt~tsp~llr~l~~~---~~piriFEiGrVFR~d~~d~tH~pEF~qlegl~~g~ 226 (350)
T 1b7y_A 161 LEGPLGEEVEGRLLLRTHTSPMQVRYMVAH---TPPFRIVVPGRVFRFEQTDATHEAVFHQLEGLVVGE 226 (350)
T ss_dssp CBCTTSCBCCSCEEECSSSTHHHHHHHHHC---CSSEEEEEEEEEECCCCCCSSCCSEEEEEEEEEEET
T ss_pred ccccccccccccceeeccchHHHHHHHHhc---CCCeeEEEeeeEEECCCCCCCCCChhHEEEEEEECC
Confidence 699999999999999999884 45899999999998764 2 24678888887
No 10
>2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii}
Probab=99.53 E-value=5.2e-15 Score=134.37 Aligned_cols=127 Identities=17% Similarity=0.259 Sum_probs=98.3
Q ss_pred hHhhhccCCCCCCCCCc-ccccCCChhhHHHHHHHHHHHHCCCceeecccccChhHHHHHhcccc-CCCC-cEEeeCCc-
Q psy18006 35 IAIAYGYNNIPKTMPRF-ASIARQVPLNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKM-EFIP-AVHIGNPK- 110 (180)
Q Consensus 35 IaR~~Gyd~i~~~~p~~-~~~~~~~~~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~~~~-~~~~-~v~l~NPi- 110 (180)
+++-|++| .++|.. ...|..+|..++.+.||++++++||+|+.++.+++.......++.+. +-.+ .+.|.||.
T Consensus 36 ~~~~~~~d---~~~P~~~~~~G~~HPl~~~~~~ir~~f~~mGF~e~~~p~ies~~~n~pq~ghpAr~~~D~tfyl~~p~~ 112 (549)
T 2du7_A 36 LIKDKHID---NKYPRLKPVYGKPHPVMETIERLRQAYLRMGFEEMINPVIVDEMEIYKQFGPEAMAVLDRCFYLAGLPR 112 (549)
T ss_dssp SSCCCTTT---TSSSSSCCCCCCCCHHHHHHHHHHHHHHTTTCEECCCCSCEEHHHHHHHTCTTHHHHGGGCCEEECCCC
T ss_pred hhhccCcC---CCCCCCCCCCCCcCHHHHHHHHHHHHHHHCCCEEeeCCeEeehHHhCCCcCCCcccccCceEEECCCCC
Confidence 55667766 445543 35688899999999999999999999999999999887544443211 0012 67788873
Q ss_pred -------------------------------------------------------------------cc---------ch
Q psy18006 111 -------------------------------------------------------------------TL---------EF 114 (180)
Q Consensus 111 -------------------------------------------------------------------s~---------e~ 114 (180)
+. ++
T Consensus 113 ~~~g~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~v~~~~~~~~s~g~~~~d~~~~e~~~~~~~~e~ 192 (549)
T 2du7_A 113 PDVGLGNEKVEIIKNLGIDIDEEKKERLREVLHLYKKGAIDGDDLVFEIAKALNVSNEMGLKVLETAFPEFKDLKPESTT 192 (549)
T ss_dssp CCCSSSSTTSCCSSCSCCCCSCCCSSSCCCSCCCSSSSCCCSSSCCSCCCSSSSCCSCSCCCSSSSSCTTSSSCCCCEEE
T ss_pred cccccchhhhhhhhhcccccccchhhhhhhhhhhhccCCCchhhhhhHhhhhhhcccccccccccccchhhccccccccc
Confidence 22 58
Q ss_pred HHHHHhhHHHHHHHHHHhhCC-CCCcceEeecceEecCC--------CcceeeeecCCC
Q psy18006 115 QIARTTLVPGLLKTLAANKKM-PLPLKLFEISDIVYKDA--------TAGTLMFTPGGN 164 (180)
Q Consensus 115 ~~lR~sLlpsLL~~l~~N~~~-~~~~~iFEiG~V~~~~~--------~~~~l~~~~~G~ 164 (180)
++||+||+||||.++++|+++ +.++++||+|+||.+++ +..+|+++++|+
T Consensus 193 svLRTsLlPGLL~~vr~N~~r~~~pvrlFEiGrVFr~D~~~d~th~~ef~qLaglv~G~ 251 (549)
T 2du7_A 193 LTLRSHMTSGWFITLSSLIKKRKLPLKLFSIDRCFRREQREDRSHLMSYHSASCVVVGE 251 (549)
T ss_dssp EECCSTTHHHHHHHHHTTTTTSCSSEEEEEEEEECCCCSSCSSSCCSCEEEEEEEEECT
T ss_pred cccccccchhHHHHHHHHHhcCCCCeEEEEEeeEEecCCcccCcCCCcceEEEEEEECC
Confidence 899999999999999999775 57899999999998653 236999999997
No 11
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=99.46 E-value=5.1e-14 Score=127.14 Aligned_cols=124 Identities=18% Similarity=0.139 Sum_probs=94.2
Q ss_pred hhhccCCCCCCCCCcccccCCChhhHHHHHHHHHHHHCCCceeecccccChhH-HHHHhccccC-----CCCcEEeeCCc
Q psy18006 37 IAYGYNNIPKTMPRFASIARQVPLNKLSDQLRGDIAQAGFTEVLTFALCSRDD-VSVKLRQKME-----FIPAVHIGNPK 110 (180)
Q Consensus 37 R~~Gyd~i~~~~p~~~~~~~~~~~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~-~~~~~~~~~~-----~~~~v~l~NPi 110 (180)
|-|+|+.+.+.. ..|..++.+++.+.||++|.++||+|++|.+++..+. .++.|+++.+ -.+.+.|.||+
T Consensus 208 ~~y~~~~~g~~~----~~G~lHPl~~v~~~Ir~if~~mGF~Ev~t~~~ves~~~NFDaLn~P~dHPaR~~~Dtfyi~~P~ 283 (508)
T 3l4g_A 208 KPYNFLAHGVLP----DSGHLHPLLKVRSQFRQIFLEMGFTEMPTDNFIESSFWNFDALFQPQQHPARDQHDTFFLRDPA 283 (508)
T ss_dssp CCCCSSSCCCCC----CCCBCCHHHHHHHHHHHHHHHTTCEECCCCCSEEEHHHHTGGGTCCSSSTTSSTTTSCBBSTTC
T ss_pred eecccCCCCCCC----CCCCCCHHHHHHHHHHHHHHHCcCeEeccCCccccHHHHHHhcCCCCCCcccccCceEEEcCcc
Confidence 677777765543 3578899999999999999999999999866665542 3455555431 12458999998
Q ss_pred cc----------------------------------chHHHHHhhHHHHHHHHHHhhC--CCCCcceEeecceEecCCC-
Q psy18006 111 TL----------------------------------EFQIARTTLVPGLLKTLAANKK--MPLPLKLFEISDIVYKDAT- 153 (180)
Q Consensus 111 s~----------------------------------e~~~lR~sLlpsLL~~l~~N~~--~~~~~~iFEiG~V~~~~~~- 153 (180)
+. +.++|||+++|++++++++|.+ +..|+++||+|+||+.+..
T Consensus 284 ~~~~~~e~~~~~v~~~He~g~~~s~g~~~~~~~~~~~~~vLRThtsp~~lr~l~~N~~~~~~~PiriFeiGrVFR~d~~D 363 (508)
T 3l4g_A 284 EALQLPMDYVQRVKRTHSQGGYGSQGYKYNWKLDEARKNLLRTHTTSASARALYRLAQKKPFTPVKYFSIDRVFRNETLD 363 (508)
T ss_dssp BCSCCCHHHHHHHHHHHHTCBTTBCCCCSCCCHHHHTBEEECCCTHHHHHHHHHHHHTSSSCCCEEEEEEEEEECCSCCC
T ss_pred ccccccHHHHHhhhhhhhccccCCccccccccccccccccccCCChHHHHHHHHHhhhhcCCCCceEEEEccEEecCCCC
Confidence 65 5789999999999999999976 3568999999999998752
Q ss_pred c------ceeeeecCCC
Q psy18006 154 A------GTLMFTPGGN 164 (180)
Q Consensus 154 ~------~~l~~~~~G~ 164 (180)
. ..+.++++|.
T Consensus 364 atHlpeFhQlegl~~~~ 380 (508)
T 3l4g_A 364 ATHLAEFHQIEGVVADH 380 (508)
T ss_dssp SSSCSEEEEEEEEEEEE
T ss_pred CCcCCeEEEEEEEEECC
Confidence 2 3455555553
No 12
>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B O-methyl tyrosine binding, magnesium binding, aminoacylatio esterification; HET: 0A1 ANP; 1.75A {Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* 3vqv_A* 3vqw_A* 3vqx_A* 3vqy_A*
Probab=99.46 E-value=7.5e-14 Score=117.63 Aligned_cols=103 Identities=22% Similarity=0.259 Sum_probs=84.3
Q ss_pred ccCCChhhHHHHHHHHHHHHCCCceeecccccChhHHHHHhccccCCCCcEEeeCCccc------chHHHHHhhHHHHHH
Q psy18006 54 IARQVPLNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEFIPAVHIGNPKTL------EFQIARTTLVPGLLK 127 (180)
Q Consensus 54 ~~~~~~~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~~~~~~~~~v~l~NPis~------e~~~lR~sLlpsLL~ 127 (180)
.+..++.+++.+.+|++|.+.||+||.|++|++.+. ++.++... .||+++ +..+||+|++|+|++
T Consensus 73 ~g~~~~~~~i~~~ir~~l~~~Gf~EV~Tp~l~~~~~-~~~~~~~~--------~~p~~~~~~~~~~~~~LR~slsp~L~~ 143 (290)
T 3qtc_A 73 EERENYLGKLEREITRFFVDRGFLEIKSPILIPLEY-IERMGIDN--------DTELSKQIFRVDKNFCLRPMLTPNLYN 143 (290)
T ss_dssp TTCCCHHHHHHHHHHHHHHHTTCEEECCCSEEETHH-HHHTTCCT--------TSSGGGGCCEETTTEEECSCSHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHHCCCEEEECCceeeHHH-HHhcCCCc--------CCchhhhheeeCCCeeEcccChHHHHH
Confidence 456677889999999999999999999999999974 55555321 255554 799999999999999
Q ss_pred HHHHhhCC-CCCcceEeecceEecCCC-------cceeeeecCCCC
Q psy18006 128 TLAANKKM-PLPLKLFEISDIVYKDAT-------AGTLMFTPGGNR 165 (180)
Q Consensus 128 ~l~~N~~~-~~~~~iFEiG~V~~~~~~-------~~~l~~~~~G~~ 165 (180)
++++|.++ ..++|+||+|+||..++. -.++++.++|..
T Consensus 144 ~l~~n~~~~~~p~rlfeiG~vFR~E~~~~~~~~Ef~ql~~~~~g~~ 189 (290)
T 3qtc_A 144 YLRKLDRALPDPIKIFEIGPCYRKESDGKEHLEEFTMLVFWQMGSG 189 (290)
T ss_dssp HHHHHTTTSCSSEEEEEEEEEECCCSCSSSCCSEEEEEEEEEESTT
T ss_pred HHHHhhccCCCCeEEEEEcCEEecCCCCCcCcchheEEEEEEEcCC
Confidence 99999764 568999999999987642 248899999865
No 13
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=99.46 E-value=4.7e-14 Score=129.48 Aligned_cols=122 Identities=19% Similarity=0.330 Sum_probs=93.3
Q ss_pred CCCCCCCCc-ccccCCChhhHHHHHHHHHHHHCCCceeecccccChhHHHHHhcccc-CCCC-cEEeeCCcc--------
Q psy18006 43 NIPKTMPRF-ASIARQVPLNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKM-EFIP-AVHIGNPKT-------- 111 (180)
Q Consensus 43 ~i~~~~p~~-~~~~~~~~~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~~~~-~~~~-~v~l~NPis-------- 111 (180)
+|..++|.. ...|..+|..++.++||+++.++||+|+.++.+++..+.+..++.+. +..+ .+.|.||..
T Consensus 49 ~id~~~P~~~~~~G~~HPl~~~~~~IR~if~~mGF~E~~~p~vese~~n~pq~gHpAR~~~D~tFyl~~P~~~~vg~~~~ 128 (648)
T 2odr_B 49 KINESYPRIKPVFGKTHPVNDTIENLRQAYLRMGFEEYINPVIVDERDIYKQFGPEAMAVLDRCFYLAGLPRPDVGLSDE 128 (648)
T ss_dssp -CTTSGGGCCCCCCBCCHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHHHHGGGHHHHHHTCEEEEBCCC--------
T ss_pred ccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEeeCCEEeehhhhCCCcCCCccccCCceEEECCCCCCccccchh
Confidence 344555543 34678899999999999999999999999999998877544443221 0012 677888751
Q ss_pred -----------------------------------------------------------c---------chHHHHHhhHH
Q psy18006 112 -----------------------------------------------------------L---------EFQIARTTLVP 123 (180)
Q Consensus 112 -----------------------------------------------------------~---------e~~~lR~sLlp 123 (180)
+ ++++||+||+|
T Consensus 129 ~~~~i~~~g~~is~~~~~l~~~~~~yk~~~~~~~dl~~~v~~~h~~~~s~g~~~~~~~~~e~~~l~~~~~~sVLRTsLlP 208 (648)
T 2odr_B 129 KISQIEKLGIKVSEHKESLQKILHGYKKGTLDGDDLVLEISNALEISSEMGLKILEDVFPEFKDLTAVSSKLTLRSHMTS 208 (648)
T ss_dssp -------------------------------------------------------------CCCCCCBCCSEEECCCTHH
T ss_pred hhhhhhhcccccchhhhhhhhhhhhhccCCCChHHHHHHHHHHhccccccceeeccccChhhhccccccccCcccccchh
Confidence 1 47899999999
Q ss_pred HHHHHHHHhhCC-CCCcceEeecceEecCC--------CcceeeeecCCC
Q psy18006 124 GLLKTLAANKKM-PLPLKLFEISDIVYKDA--------TAGTLMFTPGGN 164 (180)
Q Consensus 124 sLL~~l~~N~~~-~~~~~iFEiG~V~~~~~--------~~~~l~~~~~G~ 164 (180)
|||.++++|+++ +.++++||+|+||..++ +..+|+++++|+
T Consensus 209 GLL~~vr~N~~R~~~pvRLFEIGrVFR~D~~lDath~~Ef~qLeGlv~G~ 258 (648)
T 2odr_B 209 GWFLTVSDLMNKKPLPFKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGE 258 (648)
T ss_dssp HHHHHHHHHTTTSCSCEEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECT
T ss_pred hHHHHHHHHHhcCCCCeEEEEEeeEEecCccccccCCCcceEEEEEEECC
Confidence 999999999774 67899999999998643 234899999997
No 14
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=99.46 E-value=5.1e-14 Score=129.40 Aligned_cols=122 Identities=19% Similarity=0.330 Sum_probs=94.4
Q ss_pred CCCCCCCCc-ccccCCChhhHHHHHHHHHHHHCCCceeecccccChhHHHHHhcccc-CCCC-cEEeeCCcc--------
Q psy18006 43 NIPKTMPRF-ASIARQVPLNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKM-EFIP-AVHIGNPKT-------- 111 (180)
Q Consensus 43 ~i~~~~p~~-~~~~~~~~~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~~~~-~~~~-~v~l~NPis-------- 111 (180)
+|..++|.. ...|..+|..++.++||+++.++||+|+.++.+++..+.+..++.+. +..+ .+.|.||..
T Consensus 49 ~id~~~P~~~~~~G~~HPl~~~~~~IR~if~~mGF~E~~~p~vese~~n~pq~gHpAR~~~D~tFyL~~P~~~~vg~~~~ 128 (665)
T 2odr_A 49 KINESYPRIKPVFGKTHPVNDTIENLRQAYLRMGFEEYINPVIVDERDIYKQFGPEAMAVLDRCFYLAGLPRPDVGLSDE 128 (665)
T ss_dssp CTTTSGGGSCCCCCBCCHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHHHHGGGHHHHHHTCEEEEBCCC--------
T ss_pred ccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEeeCCEEeeehhhCCCcCCCccccCCcEEEECCCCCCccccchh
Confidence 455566643 34678899999999999999999999999999998877544443221 0012 677888751
Q ss_pred -----------------------------------------------------------c---------chHHHHHhhHH
Q psy18006 112 -----------------------------------------------------------L---------EFQIARTTLVP 123 (180)
Q Consensus 112 -----------------------------------------------------------~---------e~~~lR~sLlp 123 (180)
+ ++++||+||+|
T Consensus 129 ~~~~i~~~g~~is~~~~~l~~~~~~yk~~~~~~~dl~~~v~~~h~~~~s~g~~~~~~~~~e~~~l~~~a~~sVLRTSLlP 208 (665)
T 2odr_A 129 KISQIEKLGIKVSEHKESLQKILHGYKKGTLDGDDLVLEISNALEISSEMGLKILEDVFPEFKDLTAVSSKLTLRSHMTS 208 (665)
T ss_dssp -------------------------------------------------------------CCCCCCBCCSEEECCCTHH
T ss_pred hhhhhhhcccccchhhhhhhhhhhhhccCCCChHHHHHHHHHHhccccccceeeccccChhhhccCcccccCcccccchh
Confidence 1 47899999999
Q ss_pred HHHHHHHHhhCC-CCCcceEeecceEecCC--------CcceeeeecCCC
Q psy18006 124 GLLKTLAANKKM-PLPLKLFEISDIVYKDA--------TAGTLMFTPGGN 164 (180)
Q Consensus 124 sLL~~l~~N~~~-~~~~~iFEiG~V~~~~~--------~~~~l~~~~~G~ 164 (180)
|||.++++|+++ +.++++||+|+||..++ +..+|+++++|+
T Consensus 209 GLL~~lr~N~~R~~~pvRLFEIGrVFR~D~~lDath~~Ef~qLeGlv~G~ 258 (665)
T 2odr_A 209 GWFLTVSDLMNKKPLPFKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGE 258 (665)
T ss_dssp HHHHHHHHHTTTSCSCEEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECT
T ss_pred hHHHHHHHHHhcCCCCeEEEEEeeEEecCccccccCCCcceEEEEEEECC
Confidence 999999999774 67899999999998643 234899999997
No 15
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=99.46 E-value=5.5e-14 Score=129.40 Aligned_cols=122 Identities=19% Similarity=0.330 Sum_probs=94.5
Q ss_pred CCCCCCCCc-ccccCCChhhHHHHHHHHHHHHCCCceeecccccChhHHHHHhcccc-CCCC-cEEeeCCcc--------
Q psy18006 43 NIPKTMPRF-ASIARQVPLNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKM-EFIP-AVHIGNPKT-------- 111 (180)
Q Consensus 43 ~i~~~~p~~-~~~~~~~~~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~~~~-~~~~-~v~l~NPis-------- 111 (180)
+|..++|.. ...|..+|..++.++||+++.++||+|+.++.+++..+.+..++.+. +..+ .+.|.||..
T Consensus 49 ~id~~~P~~~~~~G~~HPl~~~~~~IReif~~mGF~E~~~p~vese~~n~pq~gHPAR~~~D~tFyL~~P~~~~vg~~~~ 128 (685)
T 2odr_D 49 KINESYPRIKPVFGKTHPVNDTIENLRQAYLRMGFEEYINPVIVDERDIYKQFGPEAMAVLDRCFYLAGLPRPDVGLSDE 128 (685)
T ss_dssp CGGGSTTTCCCCCCBCCHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHHHHGGGHHHHHHTCEEEEBCCC--------
T ss_pred ccCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHCCCEEeeCCEEeehHHhCCCcCCCccccCCcEEEECCCCCCccccchh
Confidence 455566643 35678899999999999999999999999999998877544443221 0012 677888751
Q ss_pred -----------------------------------------------------------c---------chHHHHHhhHH
Q psy18006 112 -----------------------------------------------------------L---------EFQIARTTLVP 123 (180)
Q Consensus 112 -----------------------------------------------------------~---------e~~~lR~sLlp 123 (180)
+ ++++||+||+|
T Consensus 129 ~~~~i~~~g~~is~~~~~l~~~~h~yk~~~~~~~dl~~~v~~~h~~~~s~g~~~~~~~~~ef~~l~~~a~~sVLRTSLlP 208 (685)
T 2odr_D 129 KISQIEKLGIKVSEHKESLQKILHGYKKGTLDGDDLVLEISNALEISSEMGLKILEDVFPEFKDLTAVSSKLTLRSHMTS 208 (685)
T ss_dssp -------------------------------------------------------------CCCCCCBCCSEEECCCTHH
T ss_pred hhhhhhhcccccchhhhhhhhhhhhhccCCCChHHHHHHHHHHhccccccceeeccccChhhhccCcccccCcccccchh
Confidence 1 47899999999
Q ss_pred HHHHHHHHhhCC-CCCcceEeecceEecCC--------CcceeeeecCCC
Q psy18006 124 GLLKTLAANKKM-PLPLKLFEISDIVYKDA--------TAGTLMFTPGGN 164 (180)
Q Consensus 124 sLL~~l~~N~~~-~~~~~iFEiG~V~~~~~--------~~~~l~~~~~G~ 164 (180)
|||.++++|+++ +.++++||+|+||..++ +..+|+++++|+
T Consensus 209 GLL~~vr~N~~R~~~pvRLFEIGrVFR~D~~lDath~~Ef~qLeGlv~G~ 258 (685)
T 2odr_D 209 GWFLTVSDLMNKKPLPFKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGE 258 (685)
T ss_dssp HHHHHHHHHTTTSCSCEEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECT
T ss_pred hHHHHHHHHHhCCCCCeEEEEeccEEecCccccccCCCcceEEEEEEECC
Confidence 999999999774 67899999999998643 234899999997
No 16
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=99.46 E-value=5.9e-14 Score=129.51 Aligned_cols=122 Identities=19% Similarity=0.324 Sum_probs=94.5
Q ss_pred CCCCCCCCc-ccccCCChhhHHHHHHHHHHHHCCCceeecccccChhHHHHHhcccc-CCCC-cEEeeCCc---------
Q psy18006 43 NIPKTMPRF-ASIARQVPLNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKM-EFIP-AVHIGNPK--------- 110 (180)
Q Consensus 43 ~i~~~~p~~-~~~~~~~~~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~~~~-~~~~-~v~l~NPi--------- 110 (180)
+|..++|.. ...|..+|..++.++||+++.++||+|+.++.+++..+.+..++.+. +..+ .+.|.||.
T Consensus 49 ~id~~~P~~~~~~G~~HPl~~~~~~IReif~~mGF~Ev~~p~Vese~~n~pq~gHPAR~~~D~tFYL~~P~~~~vg~~~~ 128 (701)
T 2odr_C 49 KINESYPRIKPVFGKTHPVNDTIENLRQAYLRMGFEEYINPVIVDERDIYKQFGPEAMAVLDRCFYLAGLPRPDVGLSDE 128 (701)
T ss_dssp CTTTSSTTCCCCCCBCCHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHHHHGGGHHHHHHTCEEEEECCC--------
T ss_pred ccCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHCCCEEeeCCEEeeehhhCCCcCCCccccCCcEEEECCCCCCccccchh
Confidence 456666654 35678899999999999999999999999999998877544443221 0012 57788874
Q ss_pred ----------------------------------------------------------cc---------chHHHHHhhHH
Q psy18006 111 ----------------------------------------------------------TL---------EFQIARTTLVP 123 (180)
Q Consensus 111 ----------------------------------------------------------s~---------e~~~lR~sLlp 123 (180)
++ ++++||+||+|
T Consensus 129 ~~~~i~~~g~~is~~~~~l~~~~h~yk~~~~~~~dlv~~v~~~h~~~~s~g~~~~~~~~~ef~~l~~~a~~sVLRTSLlP 208 (701)
T 2odr_C 129 KISQIEKLGIKVSEHKESLQKILHGYKKGTLDGDDLVLEISNALEISSEMGLKILEDVFPEFKDLTAVSSKLTLRSHMTS 208 (701)
T ss_dssp -------------------------------------------------------------CCCCCCEEEEEEECCCTHH
T ss_pred hhhhhhhcccccchhhhhhhhhhhhhccCCCChHHHHHHHHHHhccccccceeeccccChhhhccCcccccCcccccchh
Confidence 11 37899999999
Q ss_pred HHHHHHHHhhCC-CCCcceEeecceEecCC--------CcceeeeecCCC
Q psy18006 124 GLLKTLAANKKM-PLPLKLFEISDIVYKDA--------TAGTLMFTPGGN 164 (180)
Q Consensus 124 sLL~~l~~N~~~-~~~~~iFEiG~V~~~~~--------~~~~l~~~~~G~ 164 (180)
|||.++++|+++ +.++++||+|+||..++ +..+|+++++|+
T Consensus 209 GLL~~vr~N~~R~~~pvRLFEIGrVFR~D~~lDath~~EfhqLeGlv~G~ 258 (701)
T 2odr_C 209 GWFLTVSDLMNKKPLPFKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGE 258 (701)
T ss_dssp HHHHHHHHHTTTSCSCEEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECT
T ss_pred hHHHHHHHHHhCCCCCeEEEEEeeEEccCccccccCCCcceEEEEEEECC
Confidence 999999999774 67899999999998643 234899999997
No 17
>3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase, ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A 2zni_A
Probab=99.42 E-value=7.9e-14 Score=117.91 Aligned_cols=111 Identities=20% Similarity=0.221 Sum_probs=89.7
Q ss_pred cccCCChhhHHHHHHHHHHHHCCCceeecccccChhHHHHHhccccCCCCcEEeeCCcccchHHHHHhhHHHHHHHHHHh
Q psy18006 53 SIARQVPLNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEFIPAVHIGNPKTLEFQIARTTLVPGLLKTLAAN 132 (180)
Q Consensus 53 ~~~~~~~~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~~~~~~~~~v~l~NPis~e~~~lR~sLlpsLL~~l~~N 132 (180)
+.+..++.+++.+.++++|.+.||+|+.|++|.+.+. ++..+... ..+.+++.||+++++ +||+++.|+++.++++|
T Consensus 66 ~~g~~h~~~~l~~~ir~~~~~~Gf~EV~tP~Le~~~l-~~~~g~~~-~~~m~~~~npl~e~~-~LRp~l~p~l~~~~r~~ 142 (288)
T 3dsq_A 66 TVKHRPALLELEEKLAKALHQQGFVQVVTPTIITKSA-LAKMTIGE-DHPLFSQVFWLDGKK-CLRPMLAPNLYTLWREL 142 (288)
T ss_dssp HTTSSCHHHHHHHHHHHHHHTTTCEECCCCSEEEHHH-HHTTSSCC---CCTTTSCEEETTE-EECSCSHHHHHHHHHHH
T ss_pred cCCCcCHHHHHHHHHHHHHHHCCCEEEECCeeecHHH-HhhcCCCc-ccccEEeecccccch-hhhhcChHHHHHHHHHH
Confidence 3567788999999999999999999999999999885 45444321 113567889999876 99999999999999999
Q ss_pred hC-CCCCcceEeecceEecCCC-------cceeeeecCCCCC
Q psy18006 133 KK-MPLPLKLFEISDIVYKDAT-------AGTLMFTPGGNRT 166 (180)
Q Consensus 133 ~~-~~~~~~iFEiG~V~~~~~~-------~~~l~~~~~G~~~ 166 (180)
.+ +..|+++||+|+||+.+.. -..+++++.|+..
T Consensus 143 ~~~~~~PlrlfeiG~vFR~E~~~~~r~~EF~qle~~i~g~~~ 184 (288)
T 3dsq_A 143 ERLWDKPIRIFEIGTCYRKESQGAQHLNEFTMLNLTELGTPL 184 (288)
T ss_dssp TTTSCSCEEEEEEEEEECSCCSSSCCCSEEEEEEEEEETCCG
T ss_pred HhCCCCCEEEEEEeeEEecCCCCCCcCccEEEEEEEEEcCCc
Confidence 66 4679999999999987642 2478888888753
No 18
>3pco_A Phenylalanyl-tRNA synthetase, alpha subunit; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli}
Probab=99.39 E-value=5.6e-14 Score=120.88 Aligned_cols=107 Identities=13% Similarity=0.127 Sum_probs=84.5
Q ss_pred ccCCCCCCCCCc-ccccCCChhhHHHHHHHHHHHHCCCceeecccccChhHHHHHhccccCC-----CCcEEeeCCcccc
Q psy18006 40 GYNNIPKTMPRF-ASIARQVPLNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEF-----IPAVHIGNPKTLE 113 (180)
Q Consensus 40 Gyd~i~~~~p~~-~~~~~~~~~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~~~~~~-----~~~v~l~NPis~e 113 (180)
-=++|+.++|.. ...|..++.+.+.++|+++|+++||+|+.++.+.+....++.|+++.+. .+.+.| + |
T Consensus 88 ~~e~id~TLP~~~~~~G~~hp~~~~~~~Ir~if~~~Gf~ev~~~~ve~~~~nFd~Ln~p~dhpaR~~~dt~~i----~-e 162 (327)
T 3pco_A 88 AAETIDVSLPGRRIENGGLHPVTRTIDRIESFFGELGFTVATGPEIEDDYHNFDALNIPGHHPARADHDTFWF----D-T 162 (327)
T ss_dssp TTTCCCTTSCCCCCCCCCCCHHHHHHHHHHHHHHTTTCBCCCCCSEECTCCCCCTTTCCSSSHHHHHTTCCBS----S-S
T ss_pred hhCCCCCcCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCeEEECCCccCCHHHHHhhCCCCCChhhcccccEEe----C-C
Confidence 358899999975 4578889999999999999999999999998886665555666664321 112333 2 8
Q ss_pred hHHHHHhhHHHHHHHHHHhhCCCCCcceEeecceEecCCCc
Q psy18006 114 FQIARTTLVPGLLKTLAANKKMPLPLKLFEISDIVYKDATA 154 (180)
Q Consensus 114 ~~~lR~sLlpsLL~~l~~N~~~~~~~~iFEiG~V~~~~~~~ 154 (180)
.++|||+++|++++++++| +.|+++||+|+||..+.+.
T Consensus 163 ~~vLRThtsp~~lr~l~~~---~~pirifeiGrVyR~d~d~ 200 (327)
T 3pco_A 163 TRLLRTQTSGVQIRTMKAQ---QPPIRIIAPGRVYRNDYDQ 200 (327)
T ss_dssp SCEECSCTHHHHHHHHTTC---CSSCCBCCEECCBCSCCBT
T ss_pred CceecccCCHHHHHHHHhC---CCCeeEEeeccEEecCCCc
Confidence 8999999999999999774 4589999999999987543
No 19
>3cmq_A Phenylalanyl-tRNA synthetase, mitochondrial; classii aarss fold, RRM domain, RNA recogntion, aminoacyl-tRNA synthetase, ATP-binding, ligase; HET: FA5; 2.20A {Homo sapiens} PDB: 3hfv_A* 3teg_A* 3tup_A
Probab=98.94 E-value=3.2e-10 Score=100.29 Aligned_cols=122 Identities=11% Similarity=0.074 Sum_probs=93.4
Q ss_pred cCCCCCC---CCC-cccccCCChhhHHHHHHHHHHHHC--------CCceeec-ccccChhHHHHHhccccCC-----CC
Q psy18006 41 YNNIPKT---MPR-FASIARQVPLNKLSDQLRGDIAQA--------GFTEVLT-FALCSRDDVSVKLRQKMEF-----IP 102 (180)
Q Consensus 41 yd~i~~~---~p~-~~~~~~~~~~~~~~~~ir~~L~~~--------Gf~Ev~t-ysl~s~~~~~~~~~~~~~~-----~~ 102 (180)
|+||+++ .|. ....+..+|...+.+.|+++++++ ||+|+.+ +.++|..+.++.|+++.+- .+
T Consensus 27 ~~ni~~~~~~~~~~~~~~g~~hPl~~~~~~i~~~f~~~~~~~~g~~Gf~e~~~~~~v~s~~~NFd~L~~p~dHpaR~~~D 106 (415)
T 3cmq_A 27 HSNLTRKVLTRVGRNLHNQQHHPLWLIKERVKEHFYKQYVGRFGTPLFSVYDNLSPVVTTWQNFDSLLIPADHPSRKKGD 106 (415)
T ss_dssp SCCCCHHHHTTTTCCGGGSTTCHHHHHHHHHHHHHHHHHHHCSSSCCCEEECCCCSEEEHHHHTGGGTCCTTCGGGCGGG
T ss_pred cccCChhhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhhccccCCCCcEEEcCCCccccHHHHHHHhCCCCCCCcccccc
Confidence 7899876 453 445788899999999999999998 9999999 8899998877878765321 11
Q ss_pred cEEeeCCcccchHHHHHhhHHHHHHHHHHhhCCCCCcceEeecceEecCCC----------------------------c
Q psy18006 103 AVHIGNPKTLEFQIARTTLVPGLLKTLAANKKMPLPLKLFEISDIVYKDAT----------------------------A 154 (180)
Q Consensus 103 ~v~l~NPis~e~~~lR~sLlpsLL~~l~~N~~~~~~~~iFEiG~V~~~~~~----------------------------~ 154 (180)
...| | +..+||+++.|+++++++.|. + ++||+|+||..++. .
T Consensus 107 tfyi-~----~~~vLRThts~~~~~~l~~~~----~-k~~~~G~VyR~D~~da~h~n~fhQ~egv~lfe~g~~f~~~~~~ 176 (415)
T 3cmq_A 107 NYYL-N----RTHMLRAHTSAHQWDLLHAGL----D-AFLVVGDVYRRDQIDSQHYPIFHQLEAVRLFSKHELFAGIKDG 176 (415)
T ss_dssp SCBS-S----SSEEECSSGGGGHHHHHHTTC----S-EEEEEEEEECCCCCBTTBCSEEEEEEEEEEEEHHHHTTTSTTG
T ss_pred eEEe-c----CCeEEcCCCcHHHHHHHHHCC----C-CEEEeeeEEeccchhhhhhHHhcCCCcEEEEeccceecccccc
Confidence 1222 1 358999999999999998762 3 99999999988751 3
Q ss_pred ceeeeecCCCC-Cccchhh
Q psy18006 155 GTLMFTPGGNR-TRDLAIS 172 (180)
Q Consensus 155 ~~l~~~~~G~~-~~~~w~~ 172 (180)
.+|+++.+|.. .+..|..
T Consensus 177 ~~la~~~~g~~~~~~~~~~ 195 (415)
T 3cmq_A 177 ESLQLFEQSSRSAHKQETH 195 (415)
T ss_dssp GGCCSBCCCCCCSSCCTTB
T ss_pred ceEEEEEecCccccccccc
Confidence 45888889976 4455653
No 20
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP}
Probab=96.89 E-value=0.00067 Score=60.22 Aligned_cols=110 Identities=14% Similarity=0.071 Sum_probs=75.9
Q ss_pred hccCCCCCCCCCccc--cc-CCChhhHHHHHHHHHHHHCCCceeecccccChhHHHHHhccccCCCC-cEEeeCCc----
Q psy18006 39 YGYNNIPKTMPRFAS--IA-RQVPLNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEFIP-AVHIGNPK---- 110 (180)
Q Consensus 39 ~Gyd~i~~~~p~~~~--~~-~~~~~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~~~~~~~~-~v~l~NPi---- 110 (180)
....+|..+.|.... .+ .....+.+.+.+++.+...||+|+.|-.|-..+..... + . ...+ ..++.+..
T Consensus 5 ~~~~~~~~~~p~G~~D~lP~~~~~~~~i~~~l~~~~~~~Gy~~i~tP~~E~~~~~~~~-G-~-~~ke~m~~~~d~~~~g~ 81 (465)
T 3net_A 5 AKNDKINFSTPSGFPEFLPSEKRLELYLLDTIRRVYESYGFTPIETPAVERLEVLQAK-G-N-QGDNIIYGLEPILPPNR 81 (465)
T ss_dssp ----CCCCSCCTTCCCCCHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHGG-G-C-C--CBEEEEEEEC----
T ss_pred cCCccccccCCCCccccCHHHHHHHHHHHHHHHHHHHHcCCEEeeccccccHHHHhcc-C-C-CCccceEEEeccccccc
Confidence 455677766665321 11 11234467888999999999999999999888864333 4 2 2244 67777663
Q ss_pred ----------ccchHHHHHhhHHHHHHHHHHhhC-CCCCcceEeecceEecC
Q psy18006 111 ----------TLEFQIARTTLVPGLLKTLAANKK-MPLPLKLFEISDIVYKD 151 (180)
Q Consensus 111 ----------s~e~~~lR~sLlpsLL~~l~~N~~-~~~~~~iFEiG~V~~~~ 151 (180)
+...-+||+-+.|++...++.|.+ ...|+|+|.+|+||+.+
T Consensus 82 ~~~~~~~~~~~g~~l~LRpd~T~~~aR~~~~~~~~~~~p~r~~y~g~vfR~e 133 (465)
T 3net_A 82 QAEKDKSGDTGSEARALKFDQTVPLAAYIARHLNDLTFPFARYQMDVVFRGE 133 (465)
T ss_dssp ------------CCEEECSCSHHHHHHHHHHHGGGSCSSEEEEECCEEECBC
T ss_pred ccccccccCCCCCEEEeCCCChHHHHHHHHhcccccCCCeEEEEeccEEecC
Confidence 245568999999999999999875 35799999999999865
No 21
>1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A*
Probab=96.77 E-value=0.0014 Score=56.11 Aligned_cols=90 Identities=11% Similarity=0.045 Sum_probs=68.9
Q ss_pred hhhHHHHHHHHHHHHCCCceeecccccChhHHHHH-h-cc-ccCCCCcEEeeCCcccchHHHHHhhHHHHHHHHHHhhCC
Q psy18006 59 PLNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVK-L-RQ-KMEFIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKKM 135 (180)
Q Consensus 59 ~~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~-~-~~-~~~~~~~v~l~NPis~e~~~lR~sLlpsLL~~l~~N~~~ 135 (180)
..+.+++.+++.+...||+|+.|-.|...+. +.. + +. +...++..++... +.+.-+||+-+.|++...++.| ..
T Consensus 38 ~~~~i~~~i~~~~~~~Gy~eI~tP~le~~el-~~~s~~g~~~~~~~~my~~~D~-~g~~l~LRpd~T~~~aR~~~~~-~~ 114 (344)
T 1z7m_A 38 SLRQIEGRLRKLFSLKNYQEVMPPSFEYTQL-YTALESNGKTFNQEKMFQFIKH-EGQSITLRYDFTLPLVRLYSQI-KD 114 (344)
T ss_dssp HHHHHHHHHHHHHHHTTCEECCCCSEEEHHH-HHHHHCSSSCCCTTSCCEEECT-TCCEEEECCCSHHHHHHHHHTC-CS
T ss_pred HHHHHHHHHHHHHHHcCCEEecCcccCcHHH-HhhccCCccccccccEEEEECC-CCCEEecCCCCcHHHHHHHHhc-CC
Confidence 4556788899999999999999988888775 443 2 21 1112456777776 4455689999999999999888 44
Q ss_pred CCCcceEeecceEecC
Q psy18006 136 PLPLKLFEISDIVYKD 151 (180)
Q Consensus 136 ~~~~~iFEiG~V~~~~ 151 (180)
..|+|+|++|+||+.+
T Consensus 115 ~~P~rl~y~g~vfR~e 130 (344)
T 1z7m_A 115 STSARYSYFGKIFRKE 130 (344)
T ss_dssp CCCEEEEEEEECCCCC
T ss_pred CCCeEEEEECcEEccC
Confidence 5799999999999765
No 22
>3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, PSI-BIO; 2.30A {Alicyclobacillus acidocaldarius subsp}
Probab=96.73 E-value=0.0014 Score=56.78 Aligned_cols=90 Identities=12% Similarity=0.103 Sum_probs=68.3
Q ss_pred hhhHHHHHHHHHHHHCCCceeecccccChhHHHHHhccccCC-CCcEEeeCCcccchHHHHHhhHHHHHHHHHHhhC-CC
Q psy18006 59 PLNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEF-IPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKK-MP 136 (180)
Q Consensus 59 ~~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~~~~~~-~~~v~l~NPis~e~~~lR~sLlpsLL~~l~~N~~-~~ 136 (180)
..+.+++.+++.+...||+|+.|-.|...+. +..-+ .... ++.+++.+. +.+.-+||+-+.|++...++.|.+ ..
T Consensus 39 ~~~~i~~~i~~~f~~~Gy~eI~tP~le~~el-~~~~g-~~~~~~~my~~~D~-~g~~l~LRpd~T~~~aR~~~~~~~~~~ 115 (373)
T 3rac_A 39 RRRAVETRLLSFVEDAGYEPVTSGLFEYVDT-LLRAR-SPESSRDWIRLFDG-GGDAVALRPEMTPSIARMAAPRVAAGR 115 (373)
T ss_dssp HHHHHHHHHHHHHHHTTCEECCCCSEEEHHH-HHTTS-CTTSCCCCCBCCCC-SSSCEEECSSSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHcCCeEEECCceeeHHH-HhhcC-CccchhceEEEECC-CCCEEEECCcCHHHHHHHHHhccccCC
Confidence 3556788899999999999999999988775 33222 1112 345666665 344558999999999999988865 46
Q ss_pred CCcceEeecceEecC
Q psy18006 137 LPLKLFEISDIVYKD 151 (180)
Q Consensus 137 ~~~~iFEiG~V~~~~ 151 (180)
.|+|+|++|+||+.+
T Consensus 116 ~P~r~~y~g~vfR~e 130 (373)
T 3rac_A 116 TPIRWCYCERVYRRT 130 (373)
T ss_dssp CCCEEEEEEEEEECC
T ss_pred CCeEEEEEcceEccC
Confidence 799999999999854
No 23
>1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A
Probab=96.65 E-value=0.0034 Score=54.42 Aligned_cols=92 Identities=11% Similarity=0.104 Sum_probs=68.3
Q ss_pred hhhHHHHHHHHHHHHCCCceeecccccChhHHHHHhcc--ccCCCCcEEeeCCcccchHHHHHhhHHHHHHHHHHh-hC-
Q psy18006 59 PLNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQ--KMEFIPAVHIGNPKTLEFQIARTTLVPGLLKTLAAN-KK- 134 (180)
Q Consensus 59 ~~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~~--~~~~~~~v~l~NPis~e~~~lR~sLlpsLL~~l~~N-~~- 134 (180)
..+.+++.+++.+...||+|+.|-.|...+......+- +.-.++..++.+. +.+.=+||+-+.+++......| ..
T Consensus 19 ~~~~i~~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~~~d~~~~em~~~~D~-~g~~l~Lrpd~t~~~ar~~~~~~~~~ 97 (421)
T 1h4v_B 19 MHQRIVATARKVLEAAGALELVTPIFEETQVFEKGVGAATDIVRKEMFTFQDR-GGRSLTLRPEGTAAMVRAYLEHGMKV 97 (421)
T ss_pred HHHHHHHHHHHHHHHcCCEEecccccccHHHhhhccCCcccccccceEEEECC-CCCEEeeCCcchHHHHHHHHhccccc
Confidence 45567888999999999999999999888753222121 1111345677765 4455699999999999999877 33
Q ss_pred CCCCcceEeecceEecC
Q psy18006 135 MPLPLKLFEISDIVYKD 151 (180)
Q Consensus 135 ~~~~~~iFEiG~V~~~~ 151 (180)
+..|+|+|++|+||+.+
T Consensus 98 ~~lP~rl~~~g~vfR~e 114 (421)
T 1h4v_B 98 WPQPVRLWMAGPMFRAE 114 (421)
T ss_pred cCCCeEEEEecCeecCC
Confidence 35799999999999755
No 24
>3od1_A ATP phosphoribosyltransferase regulatory subunit; structural genomics, PSI-2, protein structure initiative; 1.97A {Bacillus halodurans}
Probab=96.61 E-value=0.0021 Score=56.09 Aligned_cols=89 Identities=15% Similarity=0.145 Sum_probs=68.0
Q ss_pred hhHHHHHHHHHHHHCCCceeecccccChhHHHHHhccccCCCCcEEeeCCcccchHHHHHhhHHHHHHHHHHhhC-CCCC
Q psy18006 60 LNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEFIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKK-MPLP 138 (180)
Q Consensus 60 ~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~~~~~~~~~v~l~NPis~e~~~lR~sLlpsLL~~l~~N~~-~~~~ 138 (180)
.+.+++.+++.+...||+|+.|-.|...+. +..-+ ....++..++.+.- .+.=+||+-+.|++...++.|.+ ...|
T Consensus 27 ~~~i~~~l~~~~~~~Gy~eI~tP~lE~~el-~~~~g-~~~~~~my~f~D~~-g~~l~LRpd~T~~~aR~~~~~~~~~~~P 103 (400)
T 3od1_A 27 KKNICDQMTEEINLWGYDMIETPTLEYYET-VGVVS-AILDQQLFKLLDQQ-GNTLVLRPDMTAPIARLVASSLKDRAYP 103 (400)
T ss_dssp HHHHHHHHHHHHHHTTCEECBCCSEEETTT-HHHHS-SSCGGGSCEEECTT-SCEEEECSCSHHHHHHHHHHHCSSSCSC
T ss_pred HHHHHHHHHHHHHHcCCEEEeCCccccHHH-HhhcC-CccccceEEEECCC-CCEEEECCCCHHHHHHHHHhhcccCCCC
Confidence 446788899999999999999999988775 33322 11123457777663 34457999999999999998865 3579
Q ss_pred cceEeecceEecC
Q psy18006 139 LKLFEISDIVYKD 151 (180)
Q Consensus 139 ~~iFEiG~V~~~~ 151 (180)
+|+|++|+||+..
T Consensus 104 ~r~~y~g~vfR~e 116 (400)
T 3od1_A 104 LRLAYQSNVYRAQ 116 (400)
T ss_dssp EEEEEEEEEECCC
T ss_pred eEEEEEcCEEeCC
Confidence 9999999999855
No 25
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1
Probab=96.39 E-value=0.0017 Score=56.74 Aligned_cols=90 Identities=9% Similarity=0.025 Sum_probs=67.3
Q ss_pred hhhHHHHHHHHHHHHCCCceeecccccChhHHHHH-hccccCCCCcEEeeCCcccchHHHHHhhHHHHHHHHHHhhCCCC
Q psy18006 59 PLNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVK-LRQKMEFIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKKMPL 137 (180)
Q Consensus 59 ~~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~-~~~~~~~~~~v~l~NPis~e~~~lR~sLlpsLL~~l~~N~~~~~ 137 (180)
..+++++.+++.+...||+|+.|-.|...+. +.. .+-. ..++..++.+. +.+.=+||+.+.|++....+.|.....
T Consensus 22 ~~~~i~~~i~~~~~~~G~~ei~tP~le~~el-~~~~~G~~-~~~em~~~~D~-~g~~l~LrPd~t~~~aR~~~~~~~~~l 98 (434)
T 1wu7_A 22 VEKFIFKTAEEAAEAFGFRRIDFPSLEYLDL-YRIKSGEE-LLQQTYSFVDK-GGREVTLIPEATPSTVRMVTSRKDLQR 98 (434)
T ss_dssp HHHHHHHHHHHHHHHTTCEECBCCSEEETHH-HHTTSCTT-GGGGSCEEECT-TSCEEEECSCSHHHHHHHHTTCTTCCS
T ss_pred HHHHHHHHHHHHHHHcCCEEeeccccccHHH-hhhccCCc-cccceEEEECC-CCCEEEeCCCChHHHHHHHHhcCCCCC
Confidence 3456788899999999999999999888774 432 2211 11345677765 445558999999999999988822356
Q ss_pred CcceEeecceEecC
Q psy18006 138 PLKLFEISDIVYKD 151 (180)
Q Consensus 138 ~~~iFEiG~V~~~~ 151 (180)
|+|+|.+|+||+.+
T Consensus 99 P~rl~~~g~vfR~e 112 (434)
T 1wu7_A 99 PLRWYSFPKVWRYE 112 (434)
T ss_dssp SEEEEECCEEECCC
T ss_pred CeEEEEEcCeecCC
Confidence 99999999999755
No 26
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A*
Probab=96.39 E-value=0.0025 Score=55.30 Aligned_cols=92 Identities=8% Similarity=0.052 Sum_probs=68.3
Q ss_pred hhhHHHHHHHHHHHHCCCceeecccccChhHHHHHhccc--cCCCCcEEeeCCcccchHHHHHhhHHHHHHHHHHhhC-C
Q psy18006 59 PLNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQK--MEFIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKK-M 135 (180)
Q Consensus 59 ~~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~~~--~~~~~~v~l~NPis~e~~~lR~sLlpsLL~~l~~N~~-~ 135 (180)
..+++++.+++.+...||+|+.|-.|...+......+-. .-.++..++.+. +.+.=+||+-+.+++......|.. +
T Consensus 20 ~~~~i~~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~~~d~~~~em~~~~D~-~g~~l~Lrpd~t~~~aR~~~~~~~~~ 98 (423)
T 1htt_A 20 IWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYTFEDR-NGDSLTLRPEGTAGCVRAGIEHGLLY 98 (423)
T ss_dssp HHHHHHHHHHHHHHTTTCEECBCCSEEEHHHHHHHHCSSSHHHHHTCEEEECT-TSCEEEECSCSHHHHHHHHHHHTCST
T ss_pred HHHHHHHHHHHHHHHcCCEEecccccCHHHHHhhccCCchhhhhhheEEEEcC-CCCEEEeCCCchHHHHHHHHhccccc
Confidence 345678889999999999999999988877532222210 001246777776 445568999999999999987754 3
Q ss_pred CCCcceEeecceEecC
Q psy18006 136 PLPLKLFEISDIVYKD 151 (180)
Q Consensus 136 ~~~~~iFEiG~V~~~~ 151 (180)
..|+|+|.+|+||+.+
T Consensus 99 ~~P~rl~~~g~vfR~e 114 (423)
T 1htt_A 99 NQEQRLWYIGPMFRHE 114 (423)
T ss_dssp TCCEEEEEEEEEECCC
T ss_pred CCCeEEEEEcCEecCC
Confidence 5799999999999755
No 27
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis}
Probab=96.06 E-value=0.0049 Score=54.71 Aligned_cols=92 Identities=8% Similarity=0.051 Sum_probs=66.6
Q ss_pred hhHHHHHHHHHHHHCCCceeecccccChhHHHHHhccccC--CCCcEEeeCCcccchHHHHHhhHHHHHHHHHHhhC-CC
Q psy18006 60 LNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKME--FIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKK-MP 136 (180)
Q Consensus 60 ~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~~~~~--~~~~v~l~NPis~e~~~lR~sLlpsLL~~l~~N~~-~~ 136 (180)
.+.+.+.+++.+...||+|+.|-.|...+......+-..+ .++..++.+.-+.+.=+||+.+.|++......|.. ..
T Consensus 49 ~~~l~~~i~~~~~~~Gy~eI~tP~le~~el~~~~~G~~~d~~~~~my~~~D~~~g~~l~LRPd~t~~~ar~~~~~~~~~~ 128 (467)
T 4e51_A 49 WEFFEATVKSLLRAYGYQNIRTPIVEHTPLFTRGIGEVTDIVEKEMYSFVDALNGENLTLRPENTAAVVRAAIEHNMLYD 128 (467)
T ss_dssp HHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHTCTTSHHHHHTCCEEECTTTCCEEEECSCSHHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHHHcCCEEEECCccccHHHhhhccCCcccccccceEEEecCCCCCEEEeCcccHHHHHHHHHHcccccC
Confidence 4457788899999999999999999888753222132000 12456666543244558999999999999888754 45
Q ss_pred CCcceEeecceEecC
Q psy18006 137 LPLKLFEISDIVYKD 151 (180)
Q Consensus 137 ~~~~iFEiG~V~~~~ 151 (180)
.|+|+|++|+||+.+
T Consensus 129 lP~r~~~~g~vfR~E 143 (467)
T 4e51_A 129 GPKRLWYIGPMFRHE 143 (467)
T ss_dssp SCEEEEEEEEEECCC
T ss_pred CCEEEEEEccEEccC
Confidence 799999999999754
No 28
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A
Probab=95.78 E-value=0.0034 Score=55.67 Aligned_cols=90 Identities=18% Similarity=0.135 Sum_probs=66.0
Q ss_pred hhHHHHHHHHHHHHCCCceeecccccChhHHHHHhccccCCCCcEEeeCCcccchHHHHHhhHHHHHHHHHHhhCC-CCC
Q psy18006 60 LNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEFIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKKM-PLP 138 (180)
Q Consensus 60 ~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~~~~~~~~~v~l~NPis~e~~~lR~sLlpsLL~~l~~N~~~-~~~ 138 (180)
.+.+++.+++.+...||+|+.|-.|-..+......+-.. .++..++... +.+.-+||+-+.|++...+..|.+. ..|
T Consensus 46 ~~~i~~~i~~~~~~~Gy~eI~tP~lE~~el~~~~~G~~~-~~~my~f~D~-~g~~l~LRpd~T~~~aR~~~~~~~~~~~P 123 (456)
T 3lc0_A 46 RRHLFDVFHATAKTFGFEEYDAPVLESEELYIRKAGEEI-TEQMFNFITK-GGHRVALRPEMTPSLARLLLGKGRSLLLP 123 (456)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCCSEEEGGGGCCCSCCHH-HHTCEEEECS-SSCEEEECSCSHHHHHHHHHHSCTTCCSS
T ss_pred HHHHHHHHHHHHHHCCCEEEECCcEeehhhhccccccch-hhceEEEEcC-CCCEEecCCcCHHHHHHHHHhcCcccCCC
Confidence 445788889999999999999998877764211011100 1235677665 4455689999999999999998653 569
Q ss_pred cceEeecceEecC
Q psy18006 139 LKLFEISDIVYKD 151 (180)
Q Consensus 139 ~~iFEiG~V~~~~ 151 (180)
+|+|++|+||+.+
T Consensus 124 ~r~~y~g~vfR~e 136 (456)
T 3lc0_A 124 AKWYSIPQCWRYE 136 (456)
T ss_dssp EEEEECCEEECCC
T ss_pred EEEEEeccEEecC
Confidence 9999999999855
No 29
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens}
Probab=95.65 E-value=0.0064 Score=53.18 Aligned_cols=88 Identities=17% Similarity=0.110 Sum_probs=63.4
Q ss_pred hhhHHHHHHHHHHHHCCCceeecccccChhHHHHHhccccCCCCcEEeeCCcccchHHHHHhhHHHHHHHHHHhhCCCCC
Q psy18006 59 PLNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEFIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKKMPLP 138 (180)
Q Consensus 59 ~~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~~~~~~~~~v~l~NPis~e~~~lR~sLlpsLL~~l~~N~~~~~~ 138 (180)
..+.+++.+++.+...||+|+.|-.|-..+......+ .+.+...++... +.+.=+||+-+.+++...++.|. ..|
T Consensus 30 ~~~~i~~~~~~~~~~~Gy~eI~tP~le~~el~~~~~g--~~~~~~y~f~D~-~g~~l~LRPd~T~~~aR~~~~~~--~~p 104 (464)
T 4g84_A 30 VREKVFDVIIRCFKRHGAEVIDTPVFELKETLMGKYG--EDSKLIYDLKDQ-GGELLSLRYDLTVPFARYLAMNK--LTN 104 (464)
T ss_dssp HHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHTTSCC------CCCBBCCC-SSCCEEECSCSHHHHHHHHHHTT--CSC
T ss_pred HHHHHHHHHHHHHHHCCCeEEECcccCcHHHhccccC--cCcceeEEEECC-CCCEEEeCCcCcHHHHHHHHhcC--CCC
Confidence 3456788899999999999999998877764211111 111234566665 45555799999999999888774 358
Q ss_pred cceEeecceEecC
Q psy18006 139 LKLFEISDIVYKD 151 (180)
Q Consensus 139 ~~iFEiG~V~~~~ 151 (180)
+|+|.+|.||+.+
T Consensus 105 ~k~~y~g~vfR~e 117 (464)
T 4g84_A 105 IKRYHIAKVYRRD 117 (464)
T ss_dssp EEEEEEEEEECCC
T ss_pred ceeEEEecceecc
Confidence 9999999999754
No 30
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1
Probab=95.41 E-value=0.0047 Score=53.41 Aligned_cols=91 Identities=12% Similarity=0.057 Sum_probs=62.8
Q ss_pred hhhHHHHHHHHHHHHCCCceeecccccChhHHHHHh-cc--ccCCCCcEEeeCCcccchHHHHHhhHHHHHHHHHHhhC-
Q psy18006 59 PLNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKL-RQ--KMEFIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKK- 134 (180)
Q Consensus 59 ~~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~-~~--~~~~~~~v~l~NPis~e~~~lR~sLlpsLL~~l~~N~~- 134 (180)
..+.+.+.+++.+...||+|+.|-.|.+.+. +..- +- +.-.++..++... +.+.-+||+.+.+++....+.+..
T Consensus 18 ~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l-~~~~~g~~~~~~~~~m~~~~D~-~g~~~~Lrp~~t~~~~r~~~~~~~~ 95 (420)
T 1qe0_A 18 KWRYIENQLDELMTFYNYKEIRTPIFESTDL-FARGVGDSTDVVQKEMYTFKDK-GDRSITLRPEGTAAVVRSYIEHKMQ 95 (420)
T ss_dssp HHHHHHHHHHHHHHHHTCEECBCCSEEEHHH-HCC-----------CCEEECHH-HHCCEEECSCSHHHHHHHHHHTTGG
T ss_pred HHHHHHHHHHHHHHHcCCEEccCcccchHHH-hhhccCCccchhhhheEEEEcC-CCCEEEeCCCChHHHHHHHHhcccc
Confidence 3456788899999999999999999988774 2211 00 0001234555433 233458999999999999886643
Q ss_pred --CCCCcceEeecceEecC
Q psy18006 135 --MPLPLKLFEISDIVYKD 151 (180)
Q Consensus 135 --~~~~~~iFEiG~V~~~~ 151 (180)
+..|+++|.+|+||+.+
T Consensus 96 ~~~~lP~r~~~~g~vfR~E 114 (420)
T 1qe0_A 96 GNPNQPIKLYYNGPMFRYE 114 (420)
T ss_dssp GCSSCSEEEEEEEEEECC-
T ss_pred ccCCCCeEEEEecCEeecC
Confidence 35699999999999755
No 31
>4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens}
Probab=95.39 E-value=0.0085 Score=53.57 Aligned_cols=87 Identities=17% Similarity=0.118 Sum_probs=62.0
Q ss_pred hhHHHHHHHHHHHHCCCceeecccccChhHHHHHhccccCCCCcEEeeCCcccchHHHHHhhHHHHHHHHHHhhCCCCCc
Q psy18006 60 LNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEFIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKKMPLPL 139 (180)
Q Consensus 60 ~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~~~~~~~~~v~l~NPis~e~~~lR~sLlpsLL~~l~~N~~~~~~~ 139 (180)
.+.+++.+++.+...||+|+.|-.|-..+......+ .+.+...++... +.+.=+||+-+.+++...++.|. ..|+
T Consensus 84 ~~~ie~~i~~~~~~~Gy~eI~tP~lE~~el~~~~~g--e~~~~my~f~D~-~g~~l~LRPd~T~~~aR~~~~~~--~~p~ 158 (517)
T 4g85_A 84 REKVFDVIIRCFKRHGAEVIDTPVFELKETLMGKYG--EDSKLIYDLKDQ-GGELLSLRYDLTVPFARYLAMNK--LTNI 158 (517)
T ss_dssp HHHHHHHHHHHHHHHTCEECBCCSEEEHHHHHCC--------CSCBBCCT-TSCCEEECSCSHHHHHHHHHHTT--CSCE
T ss_pred HHHHHHHHHHHHHHCCCeEEECcccCcHHHhhcccC--cCcceeEEEECC-CCCEEEeCCcCcHHHHHHHHhCC--CCCc
Confidence 445788899999999999999999887765322122 111223455555 44555799999999999888774 3589
Q ss_pred ceEeecceEecC
Q psy18006 140 KLFEISDIVYKD 151 (180)
Q Consensus 140 ~iFEiG~V~~~~ 151 (180)
|+|++|.||+.+
T Consensus 159 k~yyig~vfR~E 170 (517)
T 4g85_A 159 KRYHIAKVYRRD 170 (517)
T ss_dssp EEEEEEEEECCC
T ss_pred eeEEEeceEecc
Confidence 999999999754
No 32
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A*
Probab=95.36 E-value=0.015 Score=51.31 Aligned_cols=90 Identities=17% Similarity=0.177 Sum_probs=62.3
Q ss_pred hhhHHHHHHHHHHHHCCCceeecccccChhHHHHHhcc-ccCCCCcEEeeCCcccchHHHHH---hhHHHHHHHHHHhhC
Q psy18006 59 PLNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQ-KMEFIPAVHIGNPKTLEFQIART---TLVPGLLKTLAANKK 134 (180)
Q Consensus 59 ~~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~~-~~~~~~~v~l~NPis~e~~~lR~---sLlpsLL~~l~~N~~ 134 (180)
..+++.+.+++.+...||+|+.|-.|.+.+. ++.-+- +.-.++.+++.+--. +.-+||+ -++.++.+....+.
T Consensus 69 ~~~~i~~~ir~~~~~~G~~ei~tP~l~~~el-~~~sg~~d~~~~em~~~~d~~~-~~~~LrPt~ee~t~~i~r~~~~s~- 145 (458)
T 2i4l_A 69 VLKKIEQIVREEQNRAGAIELLMPTLQLADL-WRESGRYDAYGPEMLRIADRHK-RELLYGPTNEEMITEIFRAYIKSY- 145 (458)
T ss_dssp HHHHHHHHHHHHHHHTTCEECBCCSEEEHHH-HHHHTHHHHSCTTSEEEECTTC-CEEEECSCCHHHHHHHHHHHCCBG-
T ss_pred HHHHHHHHHHHHHHHcCCEEEEcCccCcHHH-HHhcCCccccccceEEEEeCCC-CeEEECCCChHHHHHHHHHHHhhc-
Confidence 4556788899999999999999999999875 443332 111234566665432 2337888 46666666654433
Q ss_pred CCCCcceEeecceEecC
Q psy18006 135 MPLPLKLFEISDIVYKD 151 (180)
Q Consensus 135 ~~~~~~iFEiG~V~~~~ 151 (180)
+..|+++|++|++|+.+
T Consensus 146 ~~lP~rl~~ig~~fR~E 162 (458)
T 2i4l_A 146 KSLPLNLYHIQWKFRDE 162 (458)
T ss_dssp GGCSEEEEEEEEEECCC
T ss_pred cccCeeeEEecCEeeCC
Confidence 25799999999999765
No 33
>3a32_A Probable threonyl-tRNA synthetase 1; aeropyrum pernix K1, protein biosynthesis, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; 2.30A {Aeropyrum pernix} PDB: 3a31_A
Probab=94.93 E-value=0.013 Score=51.85 Aligned_cols=91 Identities=15% Similarity=0.040 Sum_probs=66.6
Q ss_pred hhhHHHHHHHHHHHHCCCceeecccccChhHHHHHhc-cccCCCCcEEeeCCcccchHHHHHhhHHHHHHHHHHhhC--C
Q psy18006 59 PLNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLR-QKMEFIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKK--M 135 (180)
Q Consensus 59 ~~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~-~~~~~~~~v~l~NPis~e~~~lR~sLlpsLL~~l~~N~~--~ 135 (180)
..+.+.+.+++.+...||+|+.|-.|.+.+. ++.-+ .+.-.++..++ -...+.-+||+...+++....+.+.+ +
T Consensus 51 ~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l-~~~sg~~~~~~~emy~~--d~~~~~l~LRP~~t~~i~~~~~~~~~s~r 127 (471)
T 3a32_A 51 IRYALAEVLAKFHARRGYYVVETPIIASTEL-FKVSGHIEFYRNNMYLF--DIEGHEFAVKPMNCPYHILLFLNEVAKHR 127 (471)
T ss_dssp HHHHHHHHHHHHHHHTTCEECCCCSEEETHH-HHHTCCCTTGGGGSEEE--EETTEEEEECSCSHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHcCCEEEECCeeeehHH-hhhccCccccccceEEE--ecCCcEEEEccccHHHHHHHHHhhhhhcc
Confidence 4556788889999999999999999999885 44332 11101234555 22345568999999999999888843 3
Q ss_pred ---CCCcceEeecceEecCC
Q psy18006 136 ---PLPLKLFEISDIVYKDA 152 (180)
Q Consensus 136 ---~~~~~iFEiG~V~~~~~ 152 (180)
..|+++|.+|+||+...
T Consensus 128 ~~~~lP~rl~~~g~vfR~E~ 147 (471)
T 3a32_A 128 SKLPLPFKVFEFGRVHRYEP 147 (471)
T ss_dssp GGSCSSEEEEEEEEEECCCC
T ss_pred ccccCCeEEeeccceeccCC
Confidence 57999999999997654
No 34
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Probab=94.90 E-value=0.012 Score=54.17 Aligned_cols=93 Identities=14% Similarity=0.073 Sum_probs=65.8
Q ss_pred hhhHHHHHHHHHHHHCCCceeecccccChhHHHHHhccc-cCCCCcEEeeCCccc-chHHHHHhhHHHHHHHHHHhhC--
Q psy18006 59 PLNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQK-MEFIPAVHIGNPKTL-EFQIARTTLVPGLLKTLAANKK-- 134 (180)
Q Consensus 59 ~~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~~~-~~~~~~v~l~NPis~-e~~~lR~sLlpsLL~~l~~N~~-- 134 (180)
..+.+.+.+++.+...||+|+.|-.+.+.+. ++.-+.. .-.++..++.. ... +.-+||+..-|++....+.+.+
T Consensus 273 ~~~~l~~~ir~~~~~~Gy~eV~tP~l~~~~l-~~~sG~~d~~~~~mf~~~d-~~~~~~~~LrP~~~~~~~~~~~~~~~sy 350 (645)
T 1nyr_A 273 IRREIERYIVDKEVSMGYDHVYTPVLANVDL-YKTSGHWDHYQEDMFPPMQ-LDETESMVLRPMNCPHHMMIYANKPHSY 350 (645)
T ss_dssp HHHHHHHHHHHHHHHTTEEECBCCSEEETHH-HHHHTHHHHCTTSSCCCEE-ETTTEEEEECSSSHHHHHHHHHTSCCBG
T ss_pred HHHHHHHHHHHHHHHcCCEEEECCeeccHHH-HhhCCCccccccCcceeEe-cCCCeEEEeCCCCCHHHHHHHHhhhhhc
Confidence 4556788899999999999999999999885 4433321 11122333321 112 3447999999999999888855
Q ss_pred CCCCcceEeecceEecCCC
Q psy18006 135 MPLPLKLFEISDIVYKDAT 153 (180)
Q Consensus 135 ~~~~~~iFEiG~V~~~~~~ 153 (180)
+..|+++|++|.||+.+..
T Consensus 351 r~LPlrl~~~g~~fR~E~~ 369 (645)
T 1nyr_A 351 RELPIRIAELGTMHRYEAS 369 (645)
T ss_dssp GGCCEEEEEEEEEECCCCT
T ss_pred cCCCeEEEEeccEEecCCC
Confidence 3579999999999986543
No 35
>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A*
Probab=94.71 E-value=0.027 Score=50.86 Aligned_cols=92 Identities=16% Similarity=0.097 Sum_probs=67.5
Q ss_pred hhhHHHHHHHHHHHHCCCceeecccccChhHHHHHhccc-cCCCCcEEeeCCcccchHHHHHhhHHHHHHHHHHhhC--C
Q psy18006 59 PLNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQK-MEFIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKK--M 135 (180)
Q Consensus 59 ~~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~~~-~~~~~~v~l~NPis~e~~~lR~sLlpsLL~~l~~N~~--~ 135 (180)
..+.+.+.+++.+...||+|+.|-.|.+.+. ++.-+.. .-.++..++..- ..+.-+||+..-|++....+.+.+ +
T Consensus 49 ~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l-~~~sG~~~~~~~~m~~~~d~-~~~~~~LrP~~~~~~~~~~~~~~~s~~ 126 (572)
T 2j3l_A 49 VLEKLKTIMREEFEKIDAVEMLMPALLPAEL-WKESGRYETYGPNLYRLKDR-NDRDYILGPTHEETFTELIRDEINSYK 126 (572)
T ss_dssp HHHHHHHHHHHHHHTTTCEECBCCSEEETHH-HHHHSHHHHSCTTSCEEECT-TCCEEEECSCCHHHHHHHHHHHCCBGG
T ss_pred HHHHHHHHHHHHHHHcCCEEEECCccccHHH-HHhcCCccccchheEEEecC-CCCeEEEccccHHHHHHHHHhhccChh
Confidence 3556788889999999999999999999984 4433321 111345565542 234458999999999998887754 3
Q ss_pred CCCcceEeecceEecCC
Q psy18006 136 PLPLKLFEISDIVYKDA 152 (180)
Q Consensus 136 ~~~~~iFEiG~V~~~~~ 152 (180)
..|+++|++|++|+.+.
T Consensus 127 ~lP~r~~~~g~~fR~E~ 143 (572)
T 2j3l_A 127 RLPLNLYQIQTKYRDEK 143 (572)
T ss_dssp GCCEEEEEEEEEECCCS
T ss_pred hcCHhhheecCeeccCc
Confidence 57999999999997554
No 36
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A*
Probab=94.18 E-value=0.0087 Score=51.70 Aligned_cols=91 Identities=14% Similarity=0.089 Sum_probs=64.7
Q ss_pred hhhHHHHHHHHHHHHCCCceeecccccChhHHHHHhccccC-CCCcEEeeCCcccchHHHHHhhHHHHHHHHHHhhC-C-
Q psy18006 59 PLNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKME-FIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKK-M- 135 (180)
Q Consensus 59 ~~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~~~~~-~~~~v~l~NPis~e~~~lR~sLlpsLL~~l~~N~~-~- 135 (180)
-.+.+.+.+++.+...||+|+.|-.|.+.+. ++.-+.... .++..++. ...+.-+||++.-+++....+.+.+ .
T Consensus 32 ~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l-~~~sG~~~~~~~em~~~d--~~~~~~~LrP~~~~~~~~~~~~~~~s~~ 108 (401)
T 1evl_A 32 IFRELEVFVRSKLKEYQYQEVKGPFMMDRVL-WEKTGHWDNYKDAMFTTS--SENREYCIKPMNCPGHVQIFNQGLKSYR 108 (401)
T ss_dssp HHHHHHHHHHHHHHHTTCEECBCCSEEEHHH-HHHHTHHHHSGGGCCEEE--ETTEEEEECSCSHHHHHHHHTSSCCBGG
T ss_pred HHHHHHHHHHHHHHHcCCEEEECCeeccHHH-HHhcCcHhhhchhhEeEe--cCCceEEEcCCCCHHHHHHHHhhhhhhh
Confidence 4556788899999999999999999999985 443332100 11223321 1234458999999999988877644 2
Q ss_pred CCCcceEeecceEecCC
Q psy18006 136 PLPLKLFEISDIVYKDA 152 (180)
Q Consensus 136 ~~~~~iFEiG~V~~~~~ 152 (180)
..|+++|++|++|+.+.
T Consensus 109 ~lP~r~~~~g~~fR~E~ 125 (401)
T 1evl_A 109 DLPLRMAEFGSCHRNEP 125 (401)
T ss_dssp GCSEEEEEEEEEECCCC
T ss_pred hCChhhccccceecCCC
Confidence 57999999999997654
No 37
>1nj8_A Proline-tRNA synthetase, proline--tRNA ligase; class-II tRNA synthetase; 3.20A {Methanocaldococcus jannaschii} SCOP: c.51.1.1 d.68.5.1 d.104.1.1
Probab=93.49 E-value=0.048 Score=48.22 Aligned_cols=95 Identities=14% Similarity=0.063 Sum_probs=66.3
Q ss_pred hhhHHHHHHHHHHHHCCCceeecccccChhHHHHHhccccC-CCCcEEeeCCc---ccchHHHHHhhHHHHHHHHHHhhC
Q psy18006 59 PLNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKME-FIPAVHIGNPK---TLEFQIARTTLVPGLLKTLAANKK 134 (180)
Q Consensus 59 ~~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~~~~~-~~~~v~l~NPi---s~e~~~lR~sLlpsLL~~l~~N~~ 134 (180)
-.+.+.+.+++.+...||+|+.|-.|.+.+.....-+.... .++...+..-- ..+.-+||++.-+++....+.+.+
T Consensus 40 l~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~~~G~~~~~~~emy~~~d~g~~~~~~~l~LRP~~~~~i~~~~~~~~~ 119 (459)
T 1nj8_A 40 IRRYTFEIIRNLLDESGHDEALFPMLIPEDLLAKEAEHIKGFEDEVYWVTHGGKTQLDVKLALRPTSETPIYYMMKLWVK 119 (459)
T ss_dssp HHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHCSSSGGGGGGCEEEEESSSSEEEEEEEECSSSHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHcCCEEeeCCcccCHHHHhhhcCcccccchhhEEEeccCcccCCCeeEECCCCcHHHHHHHHHhhh
Confidence 34567888899999999999999999998853222221100 12334443211 134568999999999999987754
Q ss_pred --CCCCcceEeecceEecCCC
Q psy18006 135 --MPLPLKLFEISDIVYKDAT 153 (180)
Q Consensus 135 --~~~~~~iFEiG~V~~~~~~ 153 (180)
+..|+++|++|+||+.+..
T Consensus 120 s~r~LP~rl~qig~~fR~E~~ 140 (459)
T 1nj8_A 120 VHTDLPIKIYQIVNTFRYETK 140 (459)
T ss_dssp BTTSCCCCEEEEECCBCCCCS
T ss_pred hcccCCeEEEEEccEecCccC
Confidence 3579999999999976543
No 38
>1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline + tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A {Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1h4q_A* 1h4t_A 1h4s_A
Probab=93.05 E-value=0.051 Score=48.37 Aligned_cols=94 Identities=10% Similarity=-0.040 Sum_probs=64.3
Q ss_pred hhhHHHHHHHHHHHHCCCceeecccccChhHHHHHhccccC-CCCcEEeeCCc---ccchHHHHHhhHHHHHHHHHHhhC
Q psy18006 59 PLNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKME-FIPAVHIGNPK---TLEFQIARTTLVPGLLKTLAANKK 134 (180)
Q Consensus 59 ~~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~~~~~-~~~~v~l~NPi---s~e~~~lR~sLlpsLL~~l~~N~~ 134 (180)
-.+.+.+.+++.+...||+|+.|-.|.+.+.....-+.... .++..++..-- ..+.-+||++.-+++....+.+.+
T Consensus 46 l~~~I~~~~r~~~~~~G~~ei~tP~l~~~el~~~~sgh~d~f~~emy~~~d~g~~~l~~~l~LRP~~~~~i~~~~~~~~~ 125 (477)
T 1hc7_A 46 IWENIQQVLDRMFKETGHQNAYFPLFIPMSFLRKEAEHVEGFSPELAVVTHAGGEELEEPLAVRPTSETVIGYMWSKWIR 125 (477)
T ss_dssp HHHHHHHHHHHHHHHTTCEECBCCSEEESTTC---------CCTTCEEEEEESSSEEEEEEEECSCSHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHcCCEEEecCccccHHHHhhcCCcccccccceEEEECCCCccCCCeEEEcCCCcHHHHHHHHhhhh
Confidence 34567888899999999999999999998853221221000 12344443211 034458999999999999988855
Q ss_pred --CCCCcceEeecceEecCC
Q psy18006 135 --MPLPLKLFEISDIVYKDA 152 (180)
Q Consensus 135 --~~~~~~iFEiG~V~~~~~ 152 (180)
+..|+++|++|+||+.+.
T Consensus 126 s~r~LP~rl~qig~vfR~E~ 145 (477)
T 1hc7_A 126 SWRDLPQLLNQWGNVVRWEM 145 (477)
T ss_dssp BGGGCCEEEEEEEEEECCCS
T ss_pred ccccCCeeeEeecCEEeCCC
Confidence 357999999999997663
No 39
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1
Probab=92.53 E-value=0.026 Score=52.05 Aligned_cols=92 Identities=14% Similarity=0.088 Sum_probs=64.5
Q ss_pred hhhHHHHHHHHHHHHCCCceeecccccChhHHHHHhccccC-CCCcEEeeCCcccchHHHHHhhHHHHHHHHHHhhC--C
Q psy18006 59 PLNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKME-FIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKK--M 135 (180)
Q Consensus 59 ~~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~~~~~-~~~~v~l~NPis~e~~~lR~sLlpsLL~~l~~N~~--~ 135 (180)
-.+.+.+.+++.+...||+|+.|-.|.+.+. ++.-|.... .++..+ .. ...+.-+||+..-|++....+.+.+ +
T Consensus 273 l~~~l~~~~r~~~~~~Gy~ev~tP~l~~~~l-~~~sGh~~~~~~~my~-~d-~~~~~~~LrP~~~~~~~~~~~~~~~syr 349 (642)
T 1qf6_A 273 IFRELEVFVRSKLKEYQYQEVKGPFMMDRVL-WEKTGHWDNYKDAMFT-TS-SENREYCIKPMNCPGHVQIFNQGLKSYR 349 (642)
T ss_dssp HHHHHHHHHHHHHHHTTCEECCCCSEEETHH-HHHHSHHHHHGGGCEE-EE-ETTEEEEECSSSHHHHHHHHTTSCEEGG
T ss_pred HHHHHHHHHHHHHHHcCCEEEECCcCccHHH-HhhcCcccccccccee-ee-cCCceEEecCCCCHHHHHHHHhhhhhcc
Confidence 3456788889999999999999999999985 443332100 012333 21 1223347999999999988877644 3
Q ss_pred CCCcceEeecceEecCCC
Q psy18006 136 PLPLKLFEISDIVYKDAT 153 (180)
Q Consensus 136 ~~~~~iFEiG~V~~~~~~ 153 (180)
..|+++|++|.+|+.+..
T Consensus 350 ~LPlr~~~~g~~fR~E~~ 367 (642)
T 1qf6_A 350 DLPLRMAEFGSCHRNEPS 367 (642)
T ss_dssp GCSEEEEEEEEEECCCCG
T ss_pred ccCeEEEEeccEEecCCC
Confidence 579999999999986543
No 40
>3uh0_A Threonyl-tRNA synthetase, mitochondrial; threonine tRNA, threonyl ADE threonyl sulfamoyl adenylate; HET: TSB; 2.00A {Saccharomyces cerevisiae} PDB: 3ugt_A 3ugq_A* 4eo4_A*
Probab=91.85 E-value=0.095 Score=46.42 Aligned_cols=93 Identities=18% Similarity=0.188 Sum_probs=63.1
Q ss_pred hhhHHHHHHHHHH-HHCCCceeecccccChhHHHHHhccccCC-CCcEEeeCC-cccchHHHHHhhHHHHHHHHHHhhC-
Q psy18006 59 PLNKLSDQLRGDI-AQAGFTEVLTFALCSRDDVSVKLRQKMEF-IPAVHIGNP-KTLEFQIARTTLVPGLLKTLAANKK- 134 (180)
Q Consensus 59 ~~~~~~~~ir~~L-~~~Gf~Ev~tysl~s~~~~~~~~~~~~~~-~~~v~l~NP-is~e~~~lR~sLlpsLL~~l~~N~~- 134 (180)
-.+.+.+.+++.+ ...||+|+.|-.|.+.+. ++.-+..... ++..++... ...+.=+||++--|++....+....
T Consensus 66 l~~~l~~~~~~~~~~~~Gy~ev~tP~l~~~~l-~~~sGh~~~~~~emy~~~d~~~~~~~l~LrPt~~~~~~~~~~~~~~s 144 (460)
T 3uh0_A 66 IFNKLIEFMKLQQKFKFGFNEVVTPLIYKKTL-WEKSGHWENYADDMFKVETTDEEKEEYGLKPMNCPGHCLIFGKKDRS 144 (460)
T ss_dssp HHHHHHHHHHHHHHHTSCCEECCCCSEEEHHH-HHHHTCTTTSGGGSCEECC------CEEECSCSHHHHHHHHTTSCCB
T ss_pred HHHHHHHHHHHHHHHhcCCEEEECCeeccHHH-HHhcCCccccccceEEEecCCCCCceEEEcccCcHHHHHHHHhcccc
Confidence 3456788889999 889999999999999986 4443421111 234455432 1234457999999998887655543
Q ss_pred -CCCCcceEeecceEecCC
Q psy18006 135 -MPLPLKLFEISDIVYKDA 152 (180)
Q Consensus 135 -~~~~~~iFEiG~V~~~~~ 152 (180)
+..|++++++|.+|+.+.
T Consensus 145 ~r~LPlrl~~~g~~fR~E~ 163 (460)
T 3uh0_A 145 YNELPLRFSDFSPLHRNEA 163 (460)
T ss_dssp GGGCSEEEEECCEEECCCC
T ss_pred ccccCeEEEEecCeeeCCC
Confidence 356999999999998654
No 41
>1usy_A ATP phosphoribosyltransferase regulatory subunit; aminoacyl-tRNA synthetase; HET: HIS; 2.52A {Thermotoga maritima} SCOP: d.104.1.1 PDB: 1usy_C*
Probab=91.48 E-value=0.04 Score=45.42 Aligned_cols=75 Identities=12% Similarity=0.178 Sum_probs=52.3
Q ss_pred HHHHHH--HHHHHCCCceeecccccChhHHHHHhccccCCCCcEEeeCCcccchHHHHHhhHHHHHHHHHHhhCC-C-CC
Q psy18006 63 LSDQLR--GDIAQAGFTEVLTFALCSRDDVSVKLRQKMEFIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKKM-P-LP 138 (180)
Q Consensus 63 ~~~~ir--~~L~~~Gf~Ev~tysl~s~~~~~~~~~~~~~~~~~v~l~NPis~e~~~lR~sLlpsLL~~l~~N~~~-~-~~ 138 (180)
+++.+| +++...||+||.|-.|-..+. +.. + ++... +.+.=+||+-+.|++. +.+.+. . .|
T Consensus 6 le~~~r~~~~~~~~Gy~eI~tP~le~~~l-~~~--------d--~f~d~-~g~~l~LRpd~T~~~a---~~~~~~~~~~p 70 (275)
T 1usy_A 6 FEKVFSFYSKATKKGFSPFFVPALEKAEE-PAG--------N--FFLDR-KGNLFSIREDFTKTVL---NHRKRYSPDSQ 70 (275)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEEECSS-CCS--------S--CEEET-TSCEEEECCCHHHHHH---HHHTTCTTCCC
T ss_pred HHHHHHHHHHHHHCCCEEecCccccchhh-hcc--------c--ccCCC-CCCEEEeCCcChHHHH---HHHhhcCCCCc
Confidence 444455 899999999999988877654 211 1 22222 3455689999999999 444443 5 79
Q ss_pred cceEeecceEecCC
Q psy18006 139 LKLFEISDIVYKDA 152 (180)
Q Consensus 139 ~~iFEiG~V~~~~~ 152 (180)
+|+|++|+||+.+.
T Consensus 71 ~R~~y~g~vfR~e~ 84 (275)
T 1usy_A 71 IKVWYADFVYRYSG 84 (275)
T ss_dssp EEEECCEEEEEEET
T ss_pred eEEEEeceEEecCC
Confidence 99999999998543
No 42
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=90.89 E-value=0.095 Score=46.02 Aligned_cols=88 Identities=14% Similarity=0.056 Sum_probs=62.7
Q ss_pred hhHHHHHHHHHHHHCCCceeecccccChhHHHHHhccccCC-CCcEEeeCCcccchHHHHHhhHHHHHHHHHHhhC-C-C
Q psy18006 60 LNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEF-IPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKK-M-P 136 (180)
Q Consensus 60 ~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~~~~~~-~~~v~l~NPis~e~~~lR~sLlpsLL~~l~~N~~-~-~ 136 (180)
...+.+.+++.+...||+|+.|-.|.+.+.. +.-+..... ++..++.+ +.-+||++--+++....+.+.. . .
T Consensus 175 ~~~L~~~~~~~~~~~Gy~ev~tP~l~~~~l~-~~sG~~~~f~~emy~~~~----~~l~LrPt~e~~i~~~~~~~i~s~~~ 249 (425)
T 2dq3_A 175 ERALINFMLDLHTKKGYKEICPPHLVKPEIL-IGTGQLPKFEEDLYKCER----DNLYLIPTAEVPLTNLYREEILKEEN 249 (425)
T ss_dssp HHHHHHHHHHHHHHTTCEEEECCSEECHHHH-HHHSCTTTTGGGSCBCTT----TCCEECSSTHHHHHGGGTTEEEETTT
T ss_pred HHHHHHHHHHHHHHcCCEEEECCccccHHHH-HhcCCCCcChhhheEecC----CeEEEcCCCcHHHHHHHHhhcccccc
Confidence 4456777888888999999999999999964 443421111 23344432 3347999999998887766643 3 5
Q ss_pred CCcceEeecceEecCC
Q psy18006 137 LPLKLFEISDIVYKDA 152 (180)
Q Consensus 137 ~~~~iFEiG~V~~~~~ 152 (180)
.|++++++|+||+...
T Consensus 250 LPlrl~~~g~~FR~E~ 265 (425)
T 2dq3_A 250 LPIYLTAYTPCYRREA 265 (425)
T ss_dssp CCEEEEEEEEEECCCC
T ss_pred CCeEEEEecCEecCCC
Confidence 6999999999997654
No 43
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=89.19 E-value=0.13 Score=45.18 Aligned_cols=88 Identities=13% Similarity=-0.013 Sum_probs=61.4
Q ss_pred hhHHHHHHHHHHHHCCCceeecccccChhHHHHHhccccCC-CCcEEeeCCcccchHHHHHhhHHHHHHHHHHhhC-C-C
Q psy18006 60 LNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEF-IPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKK-M-P 136 (180)
Q Consensus 60 ~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~~~~~~-~~~v~l~NPis~e~~~lR~sLlpsLL~~l~~N~~-~-~ 136 (180)
.+.+.+.+++.+...||+|+.|-.|.+.+.. +.-+..... ++..++.+ +.-+||++--+++......+.. . .
T Consensus 169 ~~aL~~~~~~~~~~~Gy~ev~tP~l~~~~l~-~~sG~~~~f~~emy~~~d----~~l~L~Pt~e~~~~~~~~~~~~s~~~ 243 (421)
T 1ses_A 169 ELALLRFAMDFMARRGFLPMTLPSYAREKAF-LGTGHFPAYRDQVWAIAE----TDLYLTGTAEVVLNALHSGEILPYEA 243 (421)
T ss_dssp HHHHHHHHHHHHHHTTCEEEECCSEEEHHHH-HHHTCTTTTGGGSCBBTT----SSEEECSSTHHHHHHTTTTCEEEGGG
T ss_pred HHHHHHHHHHHHHHcCCEEEeCCceecHHHH-HhcCCCCcCchhcEEEcC----CeEEEeecCcHHHHHHhcccccCchh
Confidence 4456777888888999999999999999964 443422111 23444443 3346888888888777655533 2 4
Q ss_pred CCcceEeecceEecCC
Q psy18006 137 LPLKLFEISDIVYKDA 152 (180)
Q Consensus 137 ~~~~iFEiG~V~~~~~ 152 (180)
.|+++|++|.+|+...
T Consensus 244 LPlr~~~~g~~FR~E~ 259 (421)
T 1ses_A 244 LPLRYAGYAPAFRSEA 259 (421)
T ss_dssp CSEEEEEEEEEECCCC
T ss_pred CCEEEEecCCeecCCc
Confidence 6999999999998663
No 44
>1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A*
Probab=88.17 E-value=0.27 Score=43.91 Aligned_cols=92 Identities=15% Similarity=0.102 Sum_probs=63.3
Q ss_pred hhHHHHHHHHHHHHCCCceeecccccChhHHHHH-hcc-ccCCCCcEEeeCCc---ccchHHHHHhhHHHHHHHHHHhhC
Q psy18006 60 LNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVK-LRQ-KMEFIPAVHIGNPK---TLEFQIARTTLVPGLLKTLAANKK 134 (180)
Q Consensus 60 ~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~-~~~-~~~~~~~v~l~NPi---s~e~~~lR~sLlpsLL~~l~~N~~ 134 (180)
.+.+.+.+++.+.. ||+|+.|-.|.+.+.. .+ -+. +.-.++..++..-- ..+.-+||++.-+++....+.+..
T Consensus 74 ~~~i~~~~~~~~~~-G~~ei~tP~l~~~~l~-~~~sG~~~~f~~emy~~~d~g~~~~~~~l~LrPt~e~~i~~~~~~~~~ 151 (501)
T 1nj1_A 74 RKNTLKILRRILDR-DHEEVLFPLLVPEDEL-AKEAIHVKGFEDEVYWVTHGGLSKLQRKLALRPTSETVMYPMFALWVR 151 (501)
T ss_dssp HHHHHHHHHHHHTT-TCEECCCCSEEEHHHH-TTSHHHHHHTTTTCCEEEEETTEEEEEEEEECSSSHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHc-CCEEEecCcEecHHHH-hcccCCcccCCcceEEEecCCCcccCCeeEEccCCCHHHHHHHHhhhc
Confidence 44567778888888 9999999999998853 22 221 10012334443210 023347999999999999988854
Q ss_pred -C-CCCcceEeecceEecCCC
Q psy18006 135 -M-PLPLKLFEISDIVYKDAT 153 (180)
Q Consensus 135 -~-~~~~~iFEiG~V~~~~~~ 153 (180)
. ..|+++|.+|++|+.+..
T Consensus 152 s~~~LPlr~~q~g~~fR~E~~ 172 (501)
T 1nj1_A 152 SHTDLPMRFYQVVNTFRYETK 172 (501)
T ss_dssp BTTTCCEEEEEEEEEECCCCS
T ss_pred ccccCCEEEEeecCEeeCCCC
Confidence 3 579999999999986653
No 45
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A
Probab=87.17 E-value=0.33 Score=43.94 Aligned_cols=88 Identities=13% Similarity=-0.031 Sum_probs=59.4
Q ss_pred hhHHHHHHHHHHHHCCCceeecccccChhHHHHHhccccCC-CCcEEeeCCcccchHHHHHhhHHHHHHHHHHhhC--CC
Q psy18006 60 LNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEF-IPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKK--MP 136 (180)
Q Consensus 60 ~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~~~~~~-~~~v~l~NPis~e~~~lR~sLlpsLL~~l~~N~~--~~ 136 (180)
.+.+.+.+++.+...||+|+.+-.+++.+. .+.-|..... ++..++.+ +.-+|+++-=+++....+.-.. +.
T Consensus 278 ~~aL~~~~~~~~~~~Gy~ev~~P~lv~~~l-~~~sG~~~~f~e~mf~~~~----~~~~L~PT~E~~~~~l~~~~i~s~~~ 352 (536)
T 3err_A 278 ELALLRFAMDFMARRGFLPMTLPSYAREKA-FLGTGHFPAYRDQVWAIAE----TDLYLTGTAEVVLNALHSGEILPYEA 352 (536)
T ss_dssp HHHHHHHHHHHHHHTTCEEEECCSEEEHHH-HHHHTCTTTTGGGCCEETT----TTEEECSSTHHHHHHHTTTCEEEGGG
T ss_pred HHHHHHHHHHHHHHcCCEEEeccccccHHH-HHhcCCcccChhhceEecC----CCEEEccCCcHHHHHHHhcccccHhh
Confidence 445667778888889999999999999986 4445532221 34456654 3346777777765554333322 35
Q ss_pred CCcceEeecceEecCC
Q psy18006 137 LPLKLFEISDIVYKDA 152 (180)
Q Consensus 137 ~~~~iFEiG~V~~~~~ 152 (180)
.|++++++|.+|+...
T Consensus 353 LPlr~~~~~~~fR~E~ 368 (536)
T 3err_A 353 LPLRYAGYAPAFRSEA 368 (536)
T ss_dssp CSEEEEEEEEEECCCT
T ss_pred CCeeEEEecccccCCc
Confidence 7999999999998654
No 46
>3ial_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, prors, cysrs, RS, translation, ATP-binding, nucleotide-binding; HET: PR8; 2.20A {Giardia lamblia atcc 50803}
Probab=86.76 E-value=0.16 Score=45.89 Aligned_cols=95 Identities=14% Similarity=0.092 Sum_probs=63.6
Q ss_pred hhhHHHHHHHHHHHHCCCceeecccccChhHHHHHhc-cccCCCCcEEeeCCc---ccchHHHHHhhHHHHHHHHHHhhC
Q psy18006 59 PLNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLR-QKMEFIPAVHIGNPK---TLEFQIARTTLVPGLLKTLAANKK 134 (180)
Q Consensus 59 ~~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~-~~~~~~~~v~l~NPi---s~e~~~lR~sLlpsLL~~l~~N~~ 134 (180)
-.+.+.+.+++.+...||+|+.|-.|.+.+.....-+ ++.-.++...+..-- ..+.=+||++--+++....+...+
T Consensus 57 i~~~L~~~~~~~~~~~Gy~eV~tP~l~~~el~~k~sgh~~~f~~emy~v~d~g~~~~~~~l~LrPt~e~~i~~~~~~~i~ 136 (518)
T 3ial_A 57 MENAIMRLCEEEYAKVGISQILFPTVIPESFLKKESDHIKGFEAECFWVEKGGLQPLEERLALRPTSETAIYSMFSKWVR 136 (518)
T ss_dssp HHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHTSSHHHHHHHGGGCEEEEEETTEEEEEEEEECSSSHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHcCCEEEEcccccCHHHHHhhcCCcccccccEEEEecCCCcccCcceeECCCCcHHHHHHHHhhhc
Confidence 3456778888999999999999999998875311011 000012234443211 023447999999999988877654
Q ss_pred --CCCCcceEeecceEecCCC
Q psy18006 135 --MPLPLKLFEISDIVYKDAT 153 (180)
Q Consensus 135 --~~~~~~iFEiG~V~~~~~~ 153 (180)
+..|++++++|++|+....
T Consensus 137 SyrdLPlrl~q~~~~fR~E~~ 157 (518)
T 3ial_A 137 SYKDLPLKIHQTCTIFRHETK 157 (518)
T ss_dssp BGGGCCEEEEEEEEEECTTCC
T ss_pred ccccCCeEEEEEeceecCCCC
Confidence 3579999999999987643
No 47
>4hvc_A Bifunctional glutamate/proline--tRNA ligase; ligase-ligase inhibitor complex; HET: ANP HFG; 2.00A {Homo sapiens}
Probab=85.99 E-value=0.35 Score=43.61 Aligned_cols=93 Identities=15% Similarity=0.102 Sum_probs=62.6
Q ss_pred hhhHHHHHHHHHHHHCCCceeecccccChhHHHHH-hccccC-CCCcEEeeCCcc---cchHHHHHhhHHHHHHHHHHhh
Q psy18006 59 PLNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVK-LRQKME-FIPAVHIGNPKT---LEFQIARTTLVPGLLKTLAANK 133 (180)
Q Consensus 59 ~~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~-~~~~~~-~~~~v~l~NPis---~e~~~lR~sLlpsLL~~l~~N~ 133 (180)
-.+.+.+.+++.+...||+|+.|-.|.+.+. +++ -+-... .++...+..--. .+.-+||++--|++....+...
T Consensus 63 i~~~L~~~~~~~~~~~Gy~ev~tP~l~~~~l-~~k~sGh~~~f~~emy~~~d~g~~~l~e~l~LrPtse~~i~~~~~~~i 141 (519)
T 4hvc_A 63 IWEAIKDFFDAEIKKLGVENCYFPMFVSQSA-LEKEKTHVADFAPEVAWVTRSGKTELAEPIAIRPTSETVMYPAYAKWV 141 (519)
T ss_dssp HHHHHHHHHHHHHHHTTCEECBCCSEEEHHH-HTTSCCSCGGGGGGCEEEEEETTEEEEEEEEECSSSHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcCCEEEeccccccHHH-HhcccCCcccccccceEEeccCCcccccceeeCCCCcHHHHHHHHhhc
Confidence 3456778888989999999999999999885 332 111000 012233322111 2334899999999988887765
Q ss_pred C--CCCCcceEeecceEecCC
Q psy18006 134 K--MPLPLKLFEISDIVYKDA 152 (180)
Q Consensus 134 ~--~~~~~~iFEiG~V~~~~~ 152 (180)
+ +..|++++++|.||+...
T Consensus 142 ~SyrdLPlrl~q~g~~fR~E~ 162 (519)
T 4hvc_A 142 QSHRDLPIKLNQWCNVVRWEF 162 (519)
T ss_dssp SSGGGCCEEEEEEEEEECCCC
T ss_pred cccccCCeEEEEEcCeeeCCC
Confidence 4 357999999999998763
No 48
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=85.76 E-value=0.81 Score=41.04 Aligned_cols=92 Identities=14% Similarity=0.035 Sum_probs=60.8
Q ss_pred hhHHHHHHHHHHHHCCCceeecccccChhHHHHHhc-cccCCC-CcEEeeCCcccchHHHHHhhHHHHHHHHHHhhC--C
Q psy18006 60 LNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLR-QKMEFI-PAVHIGNPKTLEFQIARTTLVPGLLKTLAANKK--M 135 (180)
Q Consensus 60 ~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~-~~~~~~-~~v~l~NPis~e~~~lR~sLlpsLL~~l~~N~~--~ 135 (180)
.+.+.+.+++.+...||+|+.+-.|++.+.. +.-+ ++.-.+ +..++..- ..+--+||++-=+++....+.... +
T Consensus 222 ~~aL~~~~~d~~~~~Gy~eV~~P~lv~~~l~-~~sG~~~~f~e~emf~v~~~-~~~~l~L~PTaE~~~~~l~~~~i~s~~ 299 (501)
T 1wle_A 222 QHGLVNFTLNKLIHRGFTPMTVPDLLRGVVF-EGCGMTPNAKPSQIYNIDPS-RFEDLNLAGTAEVGLAGYFMDHSVAFR 299 (501)
T ss_dssp HHHHHHHHHHHHHHTTCEEEECCSEECHHHH-HHHTCCSSSSSCSSCBBCTT-TSSSCEECSSHHHHHHHHHTTEEEEGG
T ss_pred HHHHHHHHHHHHHHcCCEEEeCCccccHHHH-HhhcCCCccCccccEEEecC-CCCeEEECCcCcHHHHHHHhhccCCcc
Confidence 4456777888888999999999999999864 4444 221112 34444311 112236888877777666544433 3
Q ss_pred CCCcceEeecceEecCCC
Q psy18006 136 PLPLKLFEISDIVYKDAT 153 (180)
Q Consensus 136 ~~~~~iFEiG~V~~~~~~ 153 (180)
..|++++++|.+|+....
T Consensus 300 ~LPlrl~~~s~~FR~Ea~ 317 (501)
T 1wle_A 300 DLPIRMVCSSTCYRAETD 317 (501)
T ss_dssp GCSEEEEEEEEEECCCCS
T ss_pred cCCeeEEeccCcccCCCC
Confidence 579999999999986543
No 49
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=84.37 E-value=0.19 Score=44.62 Aligned_cols=88 Identities=18% Similarity=0.004 Sum_probs=61.7
Q ss_pred hhHHHHHHHHHHHHCCCceeecccccChhHHHHHhccccC-CCCcEEeeCCcccchHHHHHhhHHHHHHHHHHhhC--CC
Q psy18006 60 LNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKME-FIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKK--MP 136 (180)
Q Consensus 60 ~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~~~~~-~~~~v~l~NPis~e~~~lR~sLlpsLL~~l~~N~~--~~ 136 (180)
.+.+.+.+++.+...||+|+.+-.|++.+.. +.-|.... .++..++.+ +.-+||++--+++....+.+.. +.
T Consensus 196 ~~aL~~~~~~~~~~~Gy~ev~tP~l~~~~l~-~~sG~~~~f~~emy~~~d----~~l~LrPt~e~~~~~~~~~~~~s~~~ 270 (455)
T 2dq0_A 196 DLALIRFALDRLIEKGFTPVIPPYMVRRFVE-EGSTSFEDFEDVIYKVED----EDLYLIPTAEHPLAGMHANEILDGKD 270 (455)
T ss_dssp HHHHHHHHHHHHHHTTCEEEECCSEECHHHH-HTTSCTTHHHHTCCBBTT----SSCEECSSTHHHHHHTTTTEEEETTT
T ss_pred HHHHHHHHHHHHHHcCCEEEeCCcccCHHHH-HhcCCCCCChHhhCeecC----CcEEEcCcCcHHHHHHHHhCccCchh
Confidence 4456777888888899999999999999863 33332100 012334432 3347999998998888776643 35
Q ss_pred CCcceEeecceEecCC
Q psy18006 137 LPLKLFEISDIVYKDA 152 (180)
Q Consensus 137 ~~~~iFEiG~V~~~~~ 152 (180)
.|++++++|.+|+...
T Consensus 271 LPlr~~~~g~~FR~E~ 286 (455)
T 2dq0_A 271 LPLLYVGVSPCFRKEA 286 (455)
T ss_dssp CSEEEEEEEEEECCCT
T ss_pred CCEEEEEecCcccCCC
Confidence 7999999999997654
No 50
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens}
Probab=83.99 E-value=0.59 Score=42.24 Aligned_cols=92 Identities=10% Similarity=0.051 Sum_probs=57.4
Q ss_pred hhHHHHHHHHHHHHCCCceeecccccChhHHHHHhccccC-CCCcEEeeCCc-------ccchHHHHHhhHHHHHHHHHH
Q psy18006 60 LNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKME-FIPAVHIGNPK-------TLEFQIARTTLVPGLLKTLAA 131 (180)
Q Consensus 60 ~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~~~~~-~~~~v~l~NPi-------s~e~~~lR~sLlpsLL~~l~~ 131 (180)
.+.+.+.+++.+...||+|+.+-.|++.+.. ..-+.... .++..++...- ..+--+|+++-=+++....+.
T Consensus 204 ~raL~~f~~d~~~~~Gy~EV~~P~lv~~el~-~~sG~l~~f~eemy~v~~~g~~~~~~~~~~~l~L~PTaE~~l~~l~~~ 282 (522)
T 3vbb_A 204 EQALIQYALRTLGSRGYIPIYTPFFMRKEVM-QEVAQLSQFDEELYKVIGKGSEKSDDNSYDEKYLIATSEQPIAALHRD 282 (522)
T ss_dssp HHHHHHHHHHHHHHTTCEEEECCSEEEHHHH-HHHSCCC-CCSCCCEEC------------CCEEECSSTHHHHHTTSTT
T ss_pred HHHHHHHHHHHHHHcCCEEEECCcccchHHH-hhcCCcccCcccceEeecCCccccccccCcceeEcccCcHHHHHHHhh
Confidence 3456777788888899999999999999864 43432111 13345554321 122336777776776444322
Q ss_pred h-hCC-CCCcceEeecceEecCC
Q psy18006 132 N-KKM-PLPLKLFEISDIVYKDA 152 (180)
Q Consensus 132 N-~~~-~~~~~iFEiG~V~~~~~ 152 (180)
. +.. ..|++++++|.+|+...
T Consensus 283 ei~s~~dLPlr~~~~s~cFR~Ea 305 (522)
T 3vbb_A 283 EWLRPEDLPIKYAGLSTCFRQEV 305 (522)
T ss_dssp CEECTTTCCEEEEEEEEEECSCC
T ss_pred hecccccCCeeEEEecccccCCC
Confidence 2 223 46999999999998654
No 51
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=83.02 E-value=0.4 Score=42.95 Aligned_cols=89 Identities=15% Similarity=0.021 Sum_probs=56.1
Q ss_pred hhHHHHHHHHHHHHCCCceeecccccChhHHHHHhcc-ccCCCCcEEeeCCcccchHHHHHhhHHHHHHHHHHh--hC-C
Q psy18006 60 LNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQ-KMEFIPAVHIGNPKTLEFQIARTTLVPGLLKTLAAN--KK-M 135 (180)
Q Consensus 60 ~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~~-~~~~~~~v~l~NPis~e~~~lR~sLlpsLL~~l~~N--~~-~ 135 (180)
.+.+.+.+++.+...||+|+++-.+++.+.. +.-+. +.-.++..++.+. .+--+|+++-=+.+... -.+ .. +
T Consensus 211 ~~aL~~f~~d~~~~~Gy~eV~~P~lv~~~l~-~~sG~~~~f~e~mf~v~~~--~~~~~L~PTaE~~l~~l-~~~~i~sy~ 286 (484)
T 3lss_A 211 QVALVSYSLDFLVKRGYTPFYPPFFLNRDVM-GEVAQLSQFDEELYQVSGD--GDKKYLIATSEMPIAAY-HRGRWFTEL 286 (484)
T ss_dssp HHHHHHHHHHHHHTTTCEEEECCSEEEHHHH-HHHSCHHHHHHTCCEEESS--SSCEEECSSTHHHHHHH-TTTCEESCC
T ss_pred HHHHHHHHHHHHHHcCCEEEecCccccHHHH-HhcCCcccccccceEeecC--CcceEEeccCcHHHHHH-Hhccccchh
Confidence 3456677788888899999999999999863 33332 1101234555542 22336666655665333 233 22 3
Q ss_pred CCCcceEeecceEecCC
Q psy18006 136 PLPLKLFEISDIVYKDA 152 (180)
Q Consensus 136 ~~~~~iFEiG~V~~~~~ 152 (180)
..|++++++|.+|+...
T Consensus 287 dLPlr~~~~s~cFR~Ea 303 (484)
T 3lss_A 287 KEPLKYAGMSTCFRKEA 303 (484)
T ss_dssp SSCEEEEEEEEEECCCT
T ss_pred hCCeeEEeecCccCCCC
Confidence 56999999999998654
No 52
>2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP, aminoacyl-tRNA synthetase, ATP-binding, charcot-marie-tooth disease, disease mutation; HET: B4P; 2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A* 2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A
Probab=81.37 E-value=0.96 Score=42.10 Aligned_cols=41 Identities=17% Similarity=0.180 Sum_probs=30.3
Q ss_pred cchHHHHHhhHHHH----HHHHHHhhCCCCCcceEeecceEecCCC
Q psy18006 112 LEFQIARTTLVPGL----LKTLAANKKMPLPLKLFEISDIVYKDAT 153 (180)
Q Consensus 112 ~e~~~lR~sLlpsL----L~~l~~N~~~~~~~~iFEiG~V~~~~~~ 153 (180)
...-+||+-...|. -+.+..|. +..|+++++||++|+..-.
T Consensus 237 ~~~~~LRPEtaqg~f~~f~r~~~~~~-~~LP~~~aqiG~~fRnEis 281 (693)
T 2zt5_A 237 NMPGYLRPETAQGIFLNFKRLLEFNQ-GKLPFAAAQIGNSFRNEIS 281 (693)
T ss_dssp SSEEEECSCSHHHHHTTHHHHHHHTT-TCSCEEEEEEEEEECCCSS
T ss_pred CcceeeccccchHHHHHHHHHHHHhC-cCCCEEEEeecceecCCCC
Confidence 34456777778787 66666663 3679999999999986633
No 53
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=75.46 E-value=1.3 Score=39.70 Aligned_cols=88 Identities=11% Similarity=0.069 Sum_probs=52.5
Q ss_pred hhHHHHHHHHHHHHCCCceeecccccChhHHHHHhc-cccCCCCcEEeeCCcccchHHHHH-hhHHHHHHHHHHh--hC-
Q psy18006 60 LNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLR-QKMEFIPAVHIGNPKTLEFQIART-TLVPGLLKTLAAN--KK- 134 (180)
Q Consensus 60 ~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~-~~~~~~~~v~l~NPis~e~~~lR~-sLlpsLL~~l~~N--~~- 134 (180)
.+.+.+.+++.+...||+|+.+-.|++.+.. +.-+ ++.-.++..++.+. ..+ -+|++ +=.| +-.+-++ .+
T Consensus 188 ~~aL~~~~~d~~~~~Gy~eV~~P~lv~~~l~-~~sG~l~~f~eemf~v~~~-~~~-~~LipTaE~p--l~~l~~~ei~~S 262 (485)
T 3qne_A 188 NQALINYGLSFLSSKGYVPLQAPVMMNKEVM-AKTAQLSQFDEELYKVIDG-EDE-KYLIATSEQP--ISAYHAGEWFES 262 (485)
T ss_dssp HHHHHHHHHHHHHTTTCEEEECCSEEEHHHH-HHHSCHHHHTTTCCEEEET-TEE-EEECSSTHHH--HHHHTTTCEESS
T ss_pred HHHHHHHHHHHHHHcCCEEEeCCccccHHHH-hhcCCccccccceEEEeCC-CCe-EEEeccccHH--HHHHHhcccccc
Confidence 3346667788888899999999999999864 3333 21111334555542 222 23433 3333 2233334 22
Q ss_pred -C-CCCcceEeecceEecCC
Q psy18006 135 -M-PLPLKLFEISDIVYKDA 152 (180)
Q Consensus 135 -~-~~~~~iFEiG~V~~~~~ 152 (180)
. ..|++++++|.+|+...
T Consensus 263 ~y~dLPlr~~~~s~cfR~Ea 282 (485)
T 3qne_A 263 PAEQLPVRYAGYSSCFRREA 282 (485)
T ss_dssp HHHHCCEEEEEEEEEECSCC
T ss_pred chhcCCeeEEEecccccCCC
Confidence 2 35999999999997653
No 54
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*
Probab=68.37 E-value=5.1 Score=34.95 Aligned_cols=76 Identities=9% Similarity=0.034 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHCCCceeecccccChhHHHHHhccccCCCCcEEeeCCcccchHHHHHhhHHHHHHHHHHhhCCCCCcce
Q psy18006 62 KLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEFIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKKMPLPLKL 141 (180)
Q Consensus 62 ~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~~~~~~~~~v~l~NPis~e~~~lR~sLlpsLL~~l~~N~~~~~~~~i 141 (180)
.+.+.+|++|...||.||-|-.+.+... +.- .+...+ + .....-+||+|---. ++.+. + . ..|+
T Consensus 130 ~i~~~ir~~f~~~gF~EV~TPil~~~~~--e~~------~~~f~~-~-~~g~~~~L~~Spel~-~~~l~-~---g-~~rv 193 (422)
T 1n9w_A 130 ALVRGFRRYLDRQDFTEIFTPKVVRAGA--EGG------SGLFGV-D-YFEKRAYLAQSPQLY-KQIMV-G---V-FERV 193 (422)
T ss_dssp HHHHHHHHHHHHTTCEECCCC--------------------------------------CHHH-HHHHH-H---H-HSEE
T ss_pred HHHHHHHHHHHHCCCEEEECCEEEEeCC--CCC------ceeEEE-e-eCCCcEEeeeCHHHH-HHHHh-h---C-CCce
Confidence 4567799999999999999998876532 100 011111 1 111234566443222 23333 2 1 2699
Q ss_pred EeecceEecCCC
Q psy18006 142 FEISDIVYKDAT 153 (180)
Q Consensus 142 FEiG~V~~~~~~ 153 (180)
|+||+||+.++.
T Consensus 194 f~ig~~FR~E~~ 205 (422)
T 1n9w_A 194 YEVAPVWRMEEH 205 (422)
T ss_dssp EEEEEC------
T ss_pred eEEeCceECCCC
Confidence 999999987653
No 55
>1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase, aminoacyl-tRNA SYN; 2.75A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A*
Probab=68.23 E-value=2.3 Score=37.85 Aligned_cols=61 Identities=10% Similarity=-0.050 Sum_probs=38.2
Q ss_pred hhhhhhhHhhhccCCCCCCC----CCcc--cccCCChhhHHHHHHHHHHH--HCCCceeecccccChhH
Q psy18006 29 CDIYEDIAIAYGYNNIPKTM----PRFA--SIARQVPLNKLSDQLRGDIA--QAGFTEVLTFALCSRDD 89 (180)
Q Consensus 29 ~DliEEIaR~~Gyd~i~~~~----p~~~--~~~~~~~~~~~~~~ir~~L~--~~Gf~Ev~tysl~s~~~ 89 (180)
.|-++++++=.||=.-.... +... .+.+..-.+.+.+.+++.+. ..||+|+.|-.+.+.+.
T Consensus 5 ~~~~~~l~~r~g~i~~~~ei~~~~~G~~d~~P~G~~l~~~l~~~~r~~~~~~~~g~~ev~tP~l~~~~l 73 (505)
T 1ati_A 5 LDELVALCKRRGFIFQSSEIYGGLQGVYDYGPLGVELKNNLKQAWWRRNVYERDDMEGLDASVLTHRLV 73 (505)
T ss_dssp HHHHHHHHHHTTSEEETTGGGTCCTTCEEECHHHHHHHHHHHHHHHHHHTTSCSSEEEEBCCSEEETTH
T ss_pred HHHHHHHHHHCCCEEcchhhcCCCCCcceeCccHHHHHHHHHHHHHHHHHHhhCCcEEEEccccCCHHH
Confidence 45567788888882211111 1111 11122234567777888888 88999999999999885
No 56
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii}
Probab=66.89 E-value=4.2 Score=35.57 Aligned_cols=26 Identities=19% Similarity=0.328 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHCCCceeecccccCh
Q psy18006 62 KLSDQLRGDIAQAGFTEVLTFALCSR 87 (180)
Q Consensus 62 ~~~~~ir~~L~~~Gf~Ev~tysl~s~ 87 (180)
...+.+|+++.+.||.||-|-.+.+.
T Consensus 139 ~i~~~ir~ff~~~gF~eV~TP~l~~~ 164 (429)
T 1wyd_A 139 LALKAFRETLYKEGFIEIFTPKIIAS 164 (429)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSEESS
T ss_pred HHHHHHHHHHhhCCCEEEECCEEEee
Confidence 35667899999999999999998865
No 57
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens}
Probab=55.31 E-value=15 Score=32.82 Aligned_cols=78 Identities=15% Similarity=0.163 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHCCCceeecccccChhHHHHHhccccCCCCcEEeeCCcccchHHHHHhhHHHHHHHHHHhhCCCCCcceE
Q psy18006 63 LSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEFIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKKMPLPLKLF 142 (180)
Q Consensus 63 ~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~~~~~~~~~v~l~NPis~e~~~lR~sLlpsLL~~l~~N~~~~~~~~iF 142 (180)
..+.+|++|...||.||-|-.+++... +. .....+.-.|-...+ .+||+| |.|..-...- .. --++|
T Consensus 182 i~~~iR~f~~~~gF~EVeTPiL~~~~g-----Ga--~a~~F~t~~~~~~~~-~yL~~S--pqL~lk~liv--~g-~~rVy 248 (521)
T 3bju_A 182 IITYIRSFLDELGFLEIETPMMNIIPG-----GA--VAKPFITYHNELDMN-LYMRIA--PELYHKMLVV--GG-IDRVY 248 (521)
T ss_dssp HHHHHHHHHHHTTCEECCCCSEESSCC-----SS--SCCCCEEEETTTTEE-EEECSC--SHHHHHHHHH--TT-CCEEE
T ss_pred HHHHHHHHHHHCCCEEEeCceeeccCC-----Cc--cccceeeecccCCcc-eEeeCC--HHHHHHHHHh--cC-cCceE
Confidence 445689999999999999999986421 10 011223323544433 367755 4443321111 12 25799
Q ss_pred eecceEecCCC
Q psy18006 143 EISDIVYKDAT 153 (180)
Q Consensus 143 EiG~V~~~~~~ 153 (180)
|||++|+..+.
T Consensus 249 eig~~FR~E~~ 259 (521)
T 3bju_A 249 EIGRQFRNEGI 259 (521)
T ss_dssp EEEEEECCSCC
T ss_pred EEEcceeCCCC
Confidence 99999987653
No 58
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica}
Probab=52.74 E-value=10 Score=34.39 Aligned_cols=77 Identities=16% Similarity=0.130 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHCCCceeecccccChhHHHHHhccccCCCCcEEeeCCcccchHHHHHhhHHHHHHHHHHhhCCCCCcce
Q psy18006 62 KLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEFIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKKMPLPLKL 141 (180)
Q Consensus 62 ~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~~~~~~~~~v~l~NPis~e~~~lR~sLlpsLL~~l~~N~~~~~~~~i 141 (180)
++.+.+|++|...||.||-|-.+++..- +. + .+...+ |-...+ .+||+| |.|..... .... --++
T Consensus 249 ~i~~~iR~ff~~~gF~EVeTPiL~~~~~--eg-g-----a~~F~v-~~~~~~-~yL~~S--pql~~k~l--l~~g-~~rV 313 (548)
T 3i7f_A 249 ACCGLFREFLTSQKFVEIHTPKLIGCSS--EG-G-----SNIFEV-KYFDRK-AYLAQS--PQLYKQMA--IMGD-FRKV 313 (548)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSBC-----------------------------CCBCSC--THHHHHHH--HTTT-CCEE
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEecccC--CC-C-----cceeEE-ecCCCc-eEeccC--HHHHHHHH--HhcC-cCcE
Confidence 3456689999999999999999987642 10 0 011111 111222 356655 33332211 1222 3689
Q ss_pred EeecceEecCCC
Q psy18006 142 FEISDIVYKDAT 153 (180)
Q Consensus 142 FEiG~V~~~~~~ 153 (180)
||||++|+..+.
T Consensus 314 feI~~~FR~E~~ 325 (548)
T 3i7f_A 314 FEVGPVFRAENS 325 (548)
T ss_dssp EEEEEECCCSCC
T ss_pred EEEeeeEecCCC
Confidence 999999987653
No 59
>2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A {Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A
Probab=51.56 E-value=2.5 Score=38.13 Aligned_cols=90 Identities=11% Similarity=0.085 Sum_probs=58.1
Q ss_pred hHHHHHHHH-HHHHCCCceeecccccChhHHHHHhccccCC-CCcEEeeCC-----------------------------
Q psy18006 61 NKLSDQLRG-DIAQAGFTEVLTFALCSRDDVSVKLRQKMEF-IPAVHIGNP----------------------------- 109 (180)
Q Consensus 61 ~~~~~~ir~-~L~~~Gf~Ev~tysl~s~~~~~~~~~~~~~~-~~~v~l~NP----------------------------- 109 (180)
+.+.+.+++ ++...||+|+.+-.|++.+. ++.-+..... ++.+++...
T Consensus 235 ~~L~~~~~~e~~~~~G~~EV~tP~L~~~el-~~~SGh~~~F~demy~v~~~~~Rd~~~~e~~~~~~~~~~~~~~~~~~~~ 313 (522)
T 2cja_A 235 RTFEKIVLEELLEPLGYREMIFPKLVTWEV-WMKSGHAKGVYPEIYYVCPPQTRDPDYWEEVADYYKVTHEVPTKLIKEK 313 (522)
T ss_dssp HHHHHHHHHHTHHHHTCEECBCCSEEEHHH-HHHHTGGGTCGGGCCEEECBSCCCHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCEEEECCCcccHHH-HhhcCCcCccccceeeeecCCccchhhhhhhhhhhhccccccccccccc
Confidence 345666665 46778999999999999986 4444432211 234555311
Q ss_pred cccchHHHHHhhHHHHHHHHHHhhC--CCCCcceEe-ecceEecC
Q psy18006 110 KTLEFQIARTTLVPGLLKTLAANKK--MPLPLKLFE-ISDIVYKD 151 (180)
Q Consensus 110 is~e~~~lR~sLlpsLL~~l~~N~~--~~~~~~iFE-iG~V~~~~ 151 (180)
+..+.-+||++--+++....+.+.. +..|++++. +|++|+..
T Consensus 314 ~~~~~l~LrPt~e~~i~~~f~~~i~s~~~LPlrl~q~ig~~FR~E 358 (522)
T 2cja_A 314 IAEPIGGMCYAQCPPFWMYVAGETLPNEEIPVKVFDRSGTSHRYE 358 (522)
T ss_dssp BCCCCEEECSSSSGGGGGGTTTCEECGGGCSEEEEECSSEEECCC
T ss_pred cCCCcEEEccCCcHHHHHHHHhcccccccCCeeEEEEcCceEeCC
Confidence 1223447777777777666654422 246999999 99999876
No 60
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis}
Probab=51.24 E-value=17 Score=32.69 Aligned_cols=77 Identities=22% Similarity=0.166 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHCCCceeecccccChhHHHHHhccccCCCCcEEeeCCcccchHHHHHhhHHHHHHHHHHhhCCCCCcceE
Q psy18006 63 LSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEFIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKKMPLPLKLF 142 (180)
Q Consensus 63 ~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~~~~~~~~~v~l~NPis~e~~~lR~sLlpsLL~~l~~N~~~~~~~~iF 142 (180)
..+.+|++|...||.||-|-.+++... +. .....+.-.|-+..+. +||+| |.|..-.-. ... --++|
T Consensus 210 i~~~iR~ff~~~gFlEVeTPiL~~~~g-----GA--~a~pF~t~~n~~~~~~-yL~~S--pqLylk~L~--v~G-~~rVy 276 (529)
T 4ex5_A 210 AIASIRKFMGDADFMEVETPMLHPIPG-----GA--AAKPFVTHHNALDMEM-FLRIA--PELYLKRLI--VGG-FERVF 276 (529)
T ss_dssp HHHHHHHHHHHTTCEECCCCSEESSCC-----SS--SSCCCEEEETTTTEEE-EECSC--SHHHHHHHH--HTT-CSEEE
T ss_pred HHHHHHHHHHHCCCEEEeCCeeeccCC-----CC--cccccccccccCCcce-ecccC--HHHHHHHHH--hcC-CCcEE
Confidence 455689999999999999999985421 10 0112233345443332 45554 333321101 111 36899
Q ss_pred eecceEecCC
Q psy18006 143 EISDIVYKDA 152 (180)
Q Consensus 143 EiG~V~~~~~ 152 (180)
|||++|+..+
T Consensus 277 eIg~~FR~E~ 286 (529)
T 4ex5_A 277 EINRNFRNEG 286 (529)
T ss_dssp EEEEEECCSC
T ss_pred EeehheecCC
Confidence 9999998765
No 61
>4ah6_A Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo sapiens}
Probab=41.49 E-value=19 Score=32.98 Aligned_cols=25 Identities=24% Similarity=0.388 Sum_probs=20.6
Q ss_pred HHHHHHHHHH-HCCCceeecccccCh
Q psy18006 63 LSDQLRGDIA-QAGFTEVLTFALCSR 87 (180)
Q Consensus 63 ~~~~ir~~L~-~~Gf~Ev~tysl~s~ 87 (180)
..+.+|++|. ..||.||-|-.++..
T Consensus 154 i~~~iR~f~~~~~gF~EVeTPiL~~s 179 (617)
T 4ah6_A 154 MVMKMREYLCNLHGFVDIETPTLFKR 179 (617)
T ss_dssp HHHHHHHHHHTTSCCEECCCCSSBCC
T ss_pred HHHHHHHHHHhcCCeEEEeCCeeccC
Confidence 4566899997 699999999999853
No 62
>1kn6_A Prohormone convertase 1; beta-alpha-beta-BETA-alpha-beta, hydrolase; NMR {Mus musculus} SCOP: d.58.3.3
Probab=40.48 E-value=13 Score=25.50 Aligned_cols=31 Identities=23% Similarity=0.267 Sum_probs=23.6
Q ss_pred CeEEEEcCCCCCCCCCchhhhhhhHhhhccCCCCCCCC
Q psy18006 12 AEVSVSIPPTRHDIIHTCDIYEDIAIAYGYNNIPKTMP 49 (180)
Q Consensus 12 ~~~~v~vP~~R~DI~~~~DliEEIaR~~Gyd~i~~~~p 49 (180)
+.|.|.+| ...|.+++||+-+||.|+....+
T Consensus 13 n~waV~i~-------~g~~~A~~iA~k~GF~nlGqIg~ 43 (90)
T 1kn6_A 13 NEWAAEIP-------GGQEAASAIAEELGYDLLGQIGS 43 (90)
T ss_dssp CCEEEECS-------STHHHHHHHHHHHTCEECCCCSS
T ss_pred eeEEEEcc-------CcHHHHHHHHHHcCcEEeccCCC
Confidence 34777763 34689999999999999977643
No 63
>2bnk_A Early protein GP16.7; DNA-binding protein; 2.9A {Bacillus phage PHI29} SCOP: a.251.1.1 PDB: 2c5r_A 1zae_A
Probab=33.37 E-value=15 Score=23.42 Aligned_cols=13 Identities=38% Similarity=0.539 Sum_probs=11.6
Q ss_pred CCCCchhhhhhhH
Q psy18006 24 DIIHTCDIYEDIA 36 (180)
Q Consensus 24 DI~~~~DliEEIa 36 (180)
.|.++.|||||+.
T Consensus 20 nIrIP~DIIEdl~ 32 (67)
T 2bnk_A 20 NIRIPSDIIEDLV 32 (67)
T ss_dssp TCCCCHHHHHHHH
T ss_pred CCcCcHHHHHHHH
Confidence 6888999999997
No 64
>2hiy_A Hypothetical protein; COG3797, structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GOL; 1.40A {Streptococcus pneumoniae} SCOP: d.356.1.1
Probab=32.88 E-value=18 Score=27.71 Aligned_cols=20 Identities=20% Similarity=0.491 Sum_probs=17.1
Q ss_pred HHHHHHHHHHCCCceeeccc
Q psy18006 64 SDQLRGDIAQAGFTEVLTFA 83 (180)
Q Consensus 64 ~~~ir~~L~~~Gf~Ev~tys 83 (180)
-..+|+.|.++||.+|.||-
T Consensus 24 MadLr~~l~~lGf~~V~TyI 43 (183)
T 2hiy_A 24 MAELRQELTNLGLEKVESYI 43 (183)
T ss_dssp HHHHHHHHHHHTCEEEEEET
T ss_pred HHHHHHHHHHcCCccceEEE
Confidence 44589999999999999993
No 65
>3qxb_A Putative xylose isomerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; 1.90A {Rhodospirillum rubrum}
Probab=31.52 E-value=35 Score=27.24 Aligned_cols=65 Identities=9% Similarity=0.039 Sum_probs=43.8
Q ss_pred eEEEEcCCCCCCCCCchhhhhhhHhhhccCCCCCCCCCcccccCCChhhHHHHHHHHHHHHCCCc
Q psy18006 13 EVSVSIPPTRHDIIHTCDIYEDIAIAYGYNNIPKTMPRFASIARQVPLNKLSDQLRGDIAQAGFT 77 (180)
Q Consensus 13 ~~~v~vP~~R~DI~~~~DliEEIaR~~Gyd~i~~~~p~~~~~~~~~~~~~~~~~ir~~L~~~Gf~ 77 (180)
.+-+..-.|+.+...+.+.+.++|+-.||+.++-..................+.+++.|...|+.
T Consensus 21 ~lgi~~~~~~~~~~~~~~~~~~~a~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~ 85 (316)
T 3qxb_A 21 KLGVNLCFAVKRWLEPDRLAGLVRDDLGLEYVQYTYDLTDPWWPDIERDRRAIAYAKAFRKAGLT 85 (316)
T ss_dssp CEEEEGGGGTTTSCSHHHHHHHHHHTSCCCEEEEETTTSCTTSCHHHHHHHHHHHHHHHHHTTCE
T ss_pred cceecchHHHhccCCHHHHHHHHHHHcCCCEEEeeccccCccccccchhhHHHHHHHHHHHcCCe
Confidence 36666677998888888888999999999999754322100000011223567799999999985
No 66
>3l4g_B Phenylalanyl-tRNA synthetase beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=28.79 E-value=28 Score=31.40 Aligned_cols=28 Identities=11% Similarity=0.255 Sum_probs=25.0
Q ss_pred eEEEEcCCCCCCCCCchhhhhhhHhhhc
Q psy18006 13 EVSVSIPPTRHDIIHTCDIYEDIAIAYG 40 (180)
Q Consensus 13 ~~~v~vP~~R~DI~~~~DliEEIaR~~G 40 (180)
.+++.+++.|+|+..-.=|+-|+|-+.|
T Consensus 62 i~ei~itpNR~D~ls~~GiARela~~~~ 89 (589)
T 3l4g_B 62 LYKIDVPANRYDLLCLEGLVRGLQVFKE 89 (589)
T ss_dssp EEEEECCTTCSTTSSHHHHHHHHHHHTT
T ss_pred EEEEecCCChhHHhHHHHHHHHHHHhcC
Confidence 5999999999999999999999976655
No 67
>3mf2_A BLL0957 protein; aminoacyl-tRNA synthetase, seryl-tRNA synthetase, zinc ION, amino acid:[carrier protein] ligase; HET: AMP; 2.15A {Bradyrhizobium japonicum} PDB: 3mey_A* 3mf1_A* 3pzc_A*
Probab=26.94 E-value=13 Score=31.77 Aligned_cols=91 Identities=11% Similarity=-0.017 Sum_probs=55.7
Q ss_pred hHHHHHHHHHHHHCCCceeecccccChhHHHHHhccccCC-CCcEEeeCC-----------------------cccchHH
Q psy18006 61 NKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEF-IPAVHIGNP-----------------------KTLEFQI 116 (180)
Q Consensus 61 ~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~~~~~~-~~~v~l~NP-----------------------is~e~~~ 116 (180)
+.+.+.+++ ....||+|+.+-.+++.+. .+.-+...+. +....+... +.++--+
T Consensus 68 ~aLe~~~~~-~~~~Gy~ev~~P~lv~~~~-~e~SGhl~~F~e~mf~v~~~~~d~~e~~~ll~~~~~~~~~~~~l~~~d~~ 145 (346)
T 3mf2_A 68 ERLAALITS-HREAGTEALRFPPVMSRAQ-LEKSGYLKSFPNLLGCVCGLHGTEREINAAVSRFDAGGDWTTSLSPADLV 145 (346)
T ss_dssp HHHHHHHHH-TCCTTCEEEECCSEEEHHH-HHHTTHHHHCGGGCEEEEEECSCHHHHHHHHHHHHTTSCGGGGEEEEEEE
T ss_pred HHHHHHHHh-hHhcCCeEEECCCccCHHH-HHhcCCcccChhhcceeecccccchhhhhhhhhhccccccccccCCCCEE
Confidence 345566666 6678999999999999997 4555532111 122232210 0111235
Q ss_pred HHHhhHHHHHHHHHHh-hCCCCCcceEeecceEecCCC
Q psy18006 117 ARTTLVPGLLKTLAAN-KKMPLPLKLFEISDIVYKDAT 153 (180)
Q Consensus 117 lR~sLlpsLL~~l~~N-~~~~~~~~iFEiG~V~~~~~~ 153 (180)
|.++-=|.+....+.- ..-..++++.+.|.||+.+.+
T Consensus 146 LiPtacvpl~~~~~~eg~i~~~plr~~~~g~CFR~EaS 183 (346)
T 3mf2_A 146 LSPAACYPVYPIAASRGPLPKGGLRFDVAADCFRREPS 183 (346)
T ss_dssp ECSSSSTTHHHHHHTTCSCCTTCEEEEEEEEEECCCCC
T ss_pred EcccccHHHHHHHccCCcccccCeEEEEECCccCCcCC
Confidence 6666667777776532 232447999999999987763
No 68
>2yrp_A Nuclear factor of activated T-cells, cytoplasmic 4; beta-sandwich, immunoglobulin-like fold, TIG domain, IPT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.69 E-value=30 Score=24.81 Aligned_cols=20 Identities=5% Similarity=0.351 Sum_probs=17.1
Q ss_pred CeEEEEcCCCC-CCCCCchhh
Q psy18006 12 AEVSVSIPPTR-HDIIHTCDI 31 (180)
Q Consensus 12 ~~~~v~vP~~R-~DI~~~~Dl 31 (180)
..+.+.+|+|| .||+.++.+
T Consensus 67 ~aivf~tPpY~~~~I~~pV~V 87 (114)
T 2yrp_A 67 VTLTLTVPEYSNKRVSRPVQV 87 (114)
T ss_dssp TEEEEECCCCSCCSCSSCEEE
T ss_pred ccEEEecCCCCCCccCCCeEE
Confidence 35889999999 699998876
No 69
>1u36_A DNA-binding, nuclear factor NF-kappa-B P105 subunit; transcription factor, NF-KB, dimerization domain, intertwined folding; 1.89A {Mus musculus} SCOP: b.1.18.1 PDB: 1u3z_A 1u3y_A 3jv4_B 1bfs_A 1u3j_A 1u42_A 1u41_A 1nfi_B
Probab=23.27 E-value=36 Score=24.04 Aligned_cols=20 Identities=10% Similarity=0.280 Sum_probs=16.4
Q ss_pred CeEEEEcCCCC-CCCCCchhh
Q psy18006 12 AEVSVSIPPTR-HDIIHTCDI 31 (180)
Q Consensus 12 ~~~~v~vP~~R-~DI~~~~Dl 31 (180)
..+.+.+|+|| .+|+.++.+
T Consensus 63 ~aIvf~tPpY~~~~I~~pV~V 83 (106)
T 1u36_A 63 FAICFKTPKYKDVNITKPASV 83 (106)
T ss_dssp TEEEEECCCCSCTTCSSCEEE
T ss_pred eEEEEECCCCCCCccCCCEEE
Confidence 45888999999 599998865
No 70
>2lxr_A NADH dehydrogenase I subunit E; HP1264, oxidoreductase; NMR {Helicobacter pylori}
Probab=22.22 E-value=38 Score=22.49 Aligned_cols=34 Identities=12% Similarity=0.283 Sum_probs=24.7
Q ss_pred hHHHHHhhHHHHHHHHHHhhCCC-CCcceEeecce
Q psy18006 114 FQIARTTLVPGLLKTLAANKKMP-LPLKLFEISDI 147 (180)
Q Consensus 114 ~~~lR~sLlpsLL~~l~~N~~~~-~~~~iFEiG~V 147 (180)
.-.|+.-.++-|.+.+..+.... --+-+||||+-
T Consensus 6 LRhLk~~f~~rm~ei~~~~~~~gEV~IFlFEigDF 40 (76)
T 2lxr_A 6 LRPLKAGIFERLEELIEKEMQPNEVAIFMFEVGDF 40 (76)
T ss_dssp CGGGTTTTHHHHHHHHHTTSCTTCEEEEEECSSCC
T ss_pred hhhhHHHHHHHHHHHHHhccCCCcEEEEEEEecCc
Confidence 34555667888888888887654 35889999974
No 71
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A*
Probab=20.27 E-value=68 Score=26.10 Aligned_cols=28 Identities=14% Similarity=0.241 Sum_probs=24.4
Q ss_pred hhHHHHHHHHHHHHCCCceeecccccCh
Q psy18006 60 LNKLSDQLRGDIAQAGFTEVLTFALCSR 87 (180)
Q Consensus 60 ~~~~~~~ir~~L~~~Gf~Ev~tysl~s~ 87 (180)
.....+.+|+++...||.||-|-.+.+.
T Consensus 18 rs~i~~~ir~~f~~~GF~EVeTP~l~~~ 45 (294)
T 1nnh_A 18 QTKILEYMTDFFVKEGFKWLLPVIISPI 45 (294)
T ss_dssp HHHHHHHHHHHHHHTTCEEECCCCEESC
T ss_pred HHHHHHHHHHHHHHCCCEEEECCEEEEc
Confidence 3456888999999999999999998887
Done!