RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy18006
         (180 letters)



>d1jjcb5 d.104.1.1 (B:475-681) Phenyl-tRNA synthetase (PheRS) beta
           subunit, PheT, central domain {Thermus thermophilus
           [TaxId: 274]}
          Length = 207

 Score = 51.0 bits (121), Expect = 7e-09
 Identities = 29/110 (26%), Positives = 47/110 (42%), Gaps = 7/110 (6%)

Query: 44  IPKTMPRFASIARQVPLNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEFIPA 103
           +P   P   +   + P  K   +LR  ++  GF EV T++    +D     R+     P 
Sbjct: 2   LPAFFPAPDNRGVEAPYRKE-QRLREVLSGLGFQEVYTYSFMDPED----ARRFRLDPPR 56

Query: 104 VHIGNPKTLEFQIARTTLVPGLLKTLAANKKMPLP--LKLFEISDIVYKD 151
           + + NP   E    RT L PGL++ L  N  +  P    LFE+  +  + 
Sbjct: 57  LLLLNPLAPEKAALRTHLFPGLVRVLKENLDLDRPERALLFEVGRVFRER 106


>d1jjcb2 a.6.1.1 (B:400-474) Domains B1 and B5 of PheRS-beta, PheT
          {Thermus thermophilus [TaxId: 274]}
          Length = 75

 Score = 43.7 bits (103), Expect = 3e-07
 Identities = 14/43 (32%), Positives = 21/43 (48%)

Query: 3  LQTKILGSGAEVSVSIPPTRHDIIHTCDIYEDIAIAYGYNNIP 45
          L  ++ G G    V+ P  R D+    D+ E++A   GY  IP
Sbjct: 32 LGCRVEGEGPTYRVTPPSHRLDLRLEEDLVEEVARIQGYETIP 74


>d1qf6a4 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (ThrRS)
           {Escherichia coli [TaxId: 562]}
          Length = 291

 Score = 25.4 bits (55), Expect = 4.6
 Identities = 11/105 (10%), Positives = 25/105 (23%), Gaps = 4/105 (3%)

Query: 60  LNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEFIPAVHIGNPKTLEFQIART 119
             +L   +R  + +  + EV    +  R     +     +                  + 
Sbjct: 33  FRELEVFVRSKLKEYQYQEVKGPFMMDRV--LWEKTGHWDNYKDAMFTTSSENREYCIKP 90

Query: 120 TLVPG--LLKTLAANKKMPLPLKLFEISDIVYKDATAGTLMFTPG 162
              PG   +          LPL++ E       + +         
Sbjct: 91  MNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLMRV 135


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.137    0.398 

Gapped
Lambda     K      H
   0.267   0.0593    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 640,277
Number of extensions: 27511
Number of successful extensions: 33
Number of sequences better than 10.0: 1
Number of HSP's gapped: 32
Number of HSP's successfully gapped: 5
Length of query: 180
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 100
Effective length of database: 1,309,196
Effective search space: 130919600
Effective search space used: 130919600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.3 bits)