BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy18009
(277 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 122 bits (307), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 61/92 (66%), Positives = 75/92 (81%)
Query: 50 SFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA 109
+ G+ LSGGEKQRVAIART+LKAP I+LLDEATSALDT ER IQ++L +VCA
Sbjct: 179 GYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCA 238
Query: 110 SRTTIIVAHRLSTIIHADEILVMHAGEIVERG 141
+RTTI+VAHRLST+++AD+ILV+ G IVERG
Sbjct: 239 NRTTIVVAHRLSTVVNADQILVIKDGCIVERG 270
Score = 92.0 bits (227), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 45/63 (71%), Positives = 52/63 (82%)
Query: 146 SLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFN 205
+L VG SGAGKSTI+RLLFRFYD+ SG I ID Q+I V+QASLR IGVVPQDTVLFN
Sbjct: 82 TLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFN 141
Query: 206 NSI 208
++I
Sbjct: 142 DTI 144
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 34/63 (53%), Positives = 44/63 (69%)
Query: 215 FVDMENMFDLLQETCDVIDIPQAPMLCVAQGAVEFRNVSFSYTPERAILKNISFTVPAGK 274
F+DMENMFDLL+E +V D+P A L +G +EF NV FSY R L+++SFTV G+
Sbjct: 22 FIDMENMFDLLKEETEVKDLPGAGPLRFQKGRIEFENVHFSYADGRETLQDVSFTVMPGQ 81
Query: 275 TLA 277
TLA
Sbjct: 82 TLA 84
Score = 71.2 bits (173), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 48/78 (61%)
Query: 1 MENMFDLLQETCDVIDIPQAPMLCVAQGAVEFRNVSFSYTPERAILKNISFTVPAGKTLA 60
MENMFDLL+E +V D+P A L +G +EF NV FSY R L+++SFTV G+TLA
Sbjct: 25 MENMFDLLKEETEVKDLPGAGPLRFQKGRIEFENVHFSYADGRETLQDVSFTVMPGQTLA 84
Query: 61 LLSGGEKQRVAIARTLLK 78
L+ + I R L +
Sbjct: 85 LVGPSGAGKSTILRLLFR 102
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 104 bits (260), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 51/87 (58%), Positives = 71/87 (81%)
Query: 56 GKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTII 115
G+ LLSGG++QR+AIAR LL+ I++LDEATSALDT++ER IQ+AL+ + +RT+++
Sbjct: 475 GENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLV 534
Query: 116 VAHRLSTIIHADEILVMHAGEIVERGS 142
+AHRLSTI ADEI+V+ G IVERG+
Sbjct: 535 IAHRLSTIEKADEIVVVEDGVIVERGT 561
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 43/59 (72%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSI 208
VG+SG+GKSTI L+ RFYD++ G+I +D +++ + ASLR + +V Q+ LFN+++
Sbjct: 375 VGRSGSGKSTIASLITRFYDIDEGEILMDGHDLREYTLASLRNQVALVSQNVHLFNDTV 433
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 35/50 (70%), Gaps = 5/50 (10%)
Query: 26 AQGAVEFRNVSFSYTPERAI--LKNISFTVPAGKTLALL--SGGEKQRVA 71
A G VEFRNV+F+Y P R + L+NI+ +PAGKT+AL+ SG K +A
Sbjct: 338 ATGDVEFRNVTFTY-PGRDVPALRNINLKIPAGKTVALVGRSGSGKSTIA 386
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/37 (56%), Positives = 28/37 (75%), Gaps = 3/37 (8%)
Query: 243 AQGAVEFRNVSFSYTPERAI--LKNISFTVPAGKTLA 277
A G VEFRNV+F+Y P R + L+NI+ +PAGKT+A
Sbjct: 338 ATGDVEFRNVTFTY-PGRDVPALRNINLKIPAGKTVA 373
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 104 bits (259), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 51/87 (58%), Positives = 71/87 (81%)
Query: 56 GKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTII 115
G+ LLSGG++QR+AIAR LL+ I++LDEATSALDT++ER IQ+AL+ + +RT+++
Sbjct: 475 GENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLV 534
Query: 116 VAHRLSTIIHADEILVMHAGEIVERGS 142
+AHRLSTI ADEI+V+ G IVERG+
Sbjct: 535 IAHRLSTIEQADEIVVVEDGIIVERGT 561
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 42/59 (71%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSI 208
VG+SG+GKSTI L+ RFYD++ G I +D +++ + ASLR + +V Q+ LFN+++
Sbjct: 375 VGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTV 433
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 35/50 (70%), Gaps = 5/50 (10%)
Query: 26 AQGAVEFRNVSFSYTPERAI--LKNISFTVPAGKTLALL--SGGEKQRVA 71
A G +EFRNV+F+Y P R + L+NI+ +PAGKT+AL+ SG K +A
Sbjct: 338 ATGDLEFRNVTFTY-PGREVPALRNINLKIPAGKTVALVGRSGSGKSTIA 386
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 28/37 (75%), Gaps = 3/37 (8%)
Query: 243 AQGAVEFRNVSFSYTPERAI--LKNISFTVPAGKTLA 277
A G +EFRNV+F+Y P R + L+NI+ +PAGKT+A
Sbjct: 338 ATGDLEFRNVTFTY-PGREVPALRNINLKIPAGKTVA 373
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 103 bits (257), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 50/86 (58%), Positives = 69/86 (80%)
Query: 56 GKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTII 115
G+ LSGG++QRVAIAR LL+ +++LDEATSALDT++ER IQ+AL+ + ++T ++
Sbjct: 475 GENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLV 534
Query: 116 VAHRLSTIIHADEILVMHAGEIVERG 141
+AHRLSTI ADEILV+ GEI+ERG
Sbjct: 535 IAHRLSTIEQADEILVVDEGEIIERG 560
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 40/59 (67%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSI 208
VG+SG+GKSTI L RFYDV+SG I +D +++ +LR+ +V Q+ LFN++I
Sbjct: 375 VGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTI 433
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 32/47 (68%), Gaps = 3/47 (6%)
Query: 28 GAVEFRNVSFSYT-PERAILKNISFTVPAGKTLALL--SGGEKQRVA 71
G V+ ++V+F+Y E+ L ++SF++P GKT+AL+ SG K +A
Sbjct: 340 GEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIA 386
Score = 33.9 bits (76), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 25/34 (73%), Gaps = 1/34 (2%)
Query: 245 GAVEFRNVSFSYT-PERAILKNISFTVPAGKTLA 277
G V+ ++V+F+Y E+ L ++SF++P GKT+A
Sbjct: 340 GEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVA 373
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 100 bits (250), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 52/108 (48%), Positives = 78/108 (72%), Gaps = 10/108 (9%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
LSGG+KQR+AIAR L++ P I+LLDEATSALDT++E+ +Q AL++ RT I++AHRLS
Sbjct: 1172 LSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLS 1231
Query: 122 TIIHADEILVMHAGEIVERGS---------LFVSLLQVGQSGAGKSTI 160
TI +AD I+V+ G++ E G+ ++ S++ V Q+GA +S +
Sbjct: 1232 TIQNADLIVVIQNGKVKEHGTHQQLLAQKGIYFSMVSV-QAGAKRSYV 1278
Score = 99.8 bits (247), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 50/92 (54%), Positives = 69/92 (75%)
Query: 51 FTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS 110
F G+ A LSGG+KQR+AIAR L++ P+I+LLDEATSALDT++E +Q+AL++
Sbjct: 516 FDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREG 575
Query: 111 RTTIIVAHRLSTIIHADEILVMHAGEIVERGS 142
RTTI++AHRLST+ +AD I G IVE+G+
Sbjct: 576 RTTIVIAHRLSTVRNADVIAGFDGGVIVEQGN 607
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 44/63 (69%)
Query: 146 SLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFN 205
+L VG SG GKST+++LL RFYD +G +F+D + IK ++ LR +G+V Q+ +LF+
Sbjct: 1061 TLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFD 1120
Query: 206 NSI 208
SI
Sbjct: 1121 CSI 1123
Score = 57.8 bits (138), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 40/59 (67%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSI 208
VG SG GKST ++L+ R YD G + ID Q+I+T++ LR+ IGVV Q+ VLF +I
Sbjct: 422 VGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTI 480
Score = 35.8 bits (81), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 27/40 (67%), Gaps = 4/40 (10%)
Query: 27 QGAVEFRNVSFSYTPERA---ILKNISFTVPAGKTLALLS 63
QG +EF+N+ FSY P R ILK ++ V +G+T+AL+
Sbjct: 385 QGNLEFKNIHFSY-PSRKEVQILKGLNLKVKSGQTVALVG 423
Score = 33.9 bits (76), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 25/37 (67%), Gaps = 4/37 (10%)
Query: 244 QGAVEFRNVSFSYTPERA---ILKNISFTVPAGKTLA 277
QG +EF+N+ FSY P R ILK ++ V +G+T+A
Sbjct: 385 QGNLEFKNIHFSY-PSRKEVQILKGLNLKVKSGQTVA 420
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 27 QGAVEFRNVSFSY--TPERAILKNISFTVPAGKTLALLS 63
+G V+F V F+Y P +L+ +S V G+TLAL+
Sbjct: 1028 EGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVG 1066
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 100 bits (250), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 52/108 (48%), Positives = 78/108 (72%), Gaps = 10/108 (9%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
LSGG+KQR+AIAR L++ P I+LLDEATSALDT++E+ +Q AL++ RT I++AHRLS
Sbjct: 1172 LSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLS 1231
Query: 122 TIIHADEILVMHAGEIVERGS---------LFVSLLQVGQSGAGKSTI 160
TI +AD I+V+ G++ E G+ ++ S++ V Q+GA +S +
Sbjct: 1232 TIQNADLIVVIQNGKVKEHGTHQQLLAQKGIYFSMVSV-QAGAKRSYV 1278
Score = 99.8 bits (247), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 50/92 (54%), Positives = 69/92 (75%)
Query: 51 FTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS 110
F G+ A LSGG+KQR+AIAR L++ P+I+LLDEATSALDT++E +Q+AL++
Sbjct: 516 FDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREG 575
Query: 111 RTTIIVAHRLSTIIHADEILVMHAGEIVERGS 142
RTTI++AHRLST+ +AD I G IVE+G+
Sbjct: 576 RTTIVIAHRLSTVRNADVIAGFDGGVIVEQGN 607
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 44/63 (69%)
Query: 146 SLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFN 205
+L VG SG GKST+++LL RFYD +G +F+D + IK ++ LR +G+V Q+ +LF+
Sbjct: 1061 TLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFD 1120
Query: 206 NSI 208
SI
Sbjct: 1121 CSI 1123
Score = 57.8 bits (138), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 40/59 (67%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSI 208
VG SG GKST ++L+ R YD G + ID Q+I+T++ LR+ IGVV Q+ VLF +I
Sbjct: 422 VGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTI 480
Score = 35.8 bits (81), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 27/40 (67%), Gaps = 4/40 (10%)
Query: 27 QGAVEFRNVSFSYTPERA---ILKNISFTVPAGKTLALLS 63
QG +EF+N+ FSY P R ILK ++ V +G+T+AL+
Sbjct: 385 QGNLEFKNIHFSY-PSRKEVQILKGLNLKVKSGQTVALVG 423
Score = 33.9 bits (76), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 25/37 (67%), Gaps = 4/37 (10%)
Query: 244 QGAVEFRNVSFSYTPERA---ILKNISFTVPAGKTLA 277
QG +EF+N+ FSY P R ILK ++ V +G+T+A
Sbjct: 385 QGNLEFKNIHFSY-PSRKEVQILKGLNLKVKSGQTVA 420
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 27 QGAVEFRNVSFSY--TPERAILKNISFTVPAGKTLALLS 63
+G V+F V F+Y P +L+ +S V G+TLAL+
Sbjct: 1028 EGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVG 1066
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 100 bits (249), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 54/118 (45%), Positives = 78/118 (66%), Gaps = 9/118 (7%)
Query: 34 NVSFSYTPERAILKNI---------SFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVL 84
+V+ + E A L NI F G LSGG+KQR+AIAR L++ P+I+L
Sbjct: 1181 SVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILL 1240
Query: 85 LDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERGS 142
LDEATSALDT++E+ +Q AL+R RT I++AHRL+T+++AD I V+ G I+E+G+
Sbjct: 1241 LDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTVMNADCIAVVSNGTIIEKGT 1298
Score = 96.3 bits (238), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/117 (45%), Positives = 73/117 (62%), Gaps = 14/117 (11%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
LSGG+KQR+AIAR L++ P+I+LLDEATSALD ++E +Q AL++ RTTII+AHRLS
Sbjct: 555 LSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLS 614
Query: 122 TIIHADEILVMHAGEIVERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFID 178
TI +AD I+ G++VE G + Q G +YD+ + F D
Sbjct: 615 TIRNADLIISCKNGQVVEVGDHRALMAQQGL--------------YYDLVTAQTFTD 657
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 40/63 (63%)
Query: 146 SLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFN 205
+L VG SG GKST++ LL RFYD G+IFID IKT++ R I +V Q+ LF+
Sbjct: 1107 TLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFD 1166
Query: 206 NSI 208
SI
Sbjct: 1167 CSI 1169
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 40/60 (66%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 209
VG SG GKSTII LL R+YDV G I ID +++ ++ LR+ + VV Q+ LFN +I+
Sbjct: 450 VGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIE 509
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 4 MFDLLQETCDVIDIPQAPMLCVAQGAVEFRNVSFSY--TPERAILKNISFTVPAGKTLAL 61
+F +L++ + + A G V F+NV F+Y PE ILK +SF+V G+TLAL
Sbjct: 1051 IFGMLRKISKIDSLSLAGEKKKLYGKVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLAL 1110
Query: 62 LS 63
+
Sbjct: 1111 VG 1112
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 221 MFDLLQETCDVIDIPQAPMLCVAQGAVEFRNVSFSY--TPERAILKNISFTVPAGKTLA 277
+F +L++ + + A G V F+NV F+Y PE ILK +SF+V G+TLA
Sbjct: 1051 IFGMLRKISKIDSLSLAGEKKKLYGKVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLA 1109
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 100 bits (249), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 46/92 (50%), Positives = 67/92 (72%)
Query: 50 SFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA 109
+ G+ A LSGG++QR+AIAR L+ P+I++ DEATSALD ++E I ++++C
Sbjct: 128 GYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK 187
Query: 110 SRTTIIVAHRLSTIIHADEILVMHAGEIVERG 141
RT II+AHRLST+ +AD I+VM G+IVE+G
Sbjct: 188 GRTVIIIAHRLSTVKNADRIIVMEKGKIVEQG 219
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 39/59 (66%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSI 208
VG+SG+GKST+ +L+ RFY E+G + ID ++ LR+ +GVV QD VL N SI
Sbjct: 35 VGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSI 93
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
Query: 30 VEFRNVSFSYTPER-AILKNISFTVPAGKTLALL--SGGEKQRVA--IARTLLKAPQIVL 84
+ FRN+ F Y P+ IL NI+ ++ G+ + ++ SG K + I R + VL
Sbjct: 2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 61
Query: 85 LDEATSAL 92
+D AL
Sbjct: 62 IDGHDLAL 69
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 100 bits (249), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 46/92 (50%), Positives = 67/92 (72%)
Query: 50 SFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA 109
+ G+ A LSGG++QR+AIAR L+ P+I++ DEATSALD ++E I ++++C
Sbjct: 134 GYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK 193
Query: 110 SRTTIIVAHRLSTIIHADEILVMHAGEIVERG 141
RT II+AHRLST+ +AD I+VM G+IVE+G
Sbjct: 194 GRTVIIIAHRLSTVKNADRIIVMEKGKIVEQG 225
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 39/59 (66%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSI 208
VG+SG+GKST+ +L+ RFY E+G + ID ++ LR+ +GVV QD VL N SI
Sbjct: 41 VGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSI 99
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
Query: 30 VEFRNVSFSYTPER-AILKNISFTVPAGKTLALL--SGGEKQRVA--IARTLLKAPQIVL 84
+ FRN+ F Y P+ IL NI+ ++ G+ + ++ SG K + I R + VL
Sbjct: 8 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 67
Query: 85 LDEATSAL 92
+D AL
Sbjct: 68 IDGHDLAL 75
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 100 bits (248), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 46/92 (50%), Positives = 67/92 (72%)
Query: 50 SFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA 109
+ G+ A LSGG++QR+AIAR L+ P+I++ DEATSALD ++E I ++++C
Sbjct: 130 GYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK 189
Query: 110 SRTTIIVAHRLSTIIHADEILVMHAGEIVERG 141
RT II+AHRLST+ +AD I+VM G+IVE+G
Sbjct: 190 GRTVIIIAHRLSTVKNADRIIVMEKGKIVEQG 221
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 39/59 (66%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSI 208
VG+SG+GKST+ +L+ RFY E+G + ID ++ LR+ +GVV QD VL N SI
Sbjct: 37 VGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSI 95
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
Query: 30 VEFRNVSFSYTPER-AILKNISFTVPAGKTLALL--SGGEKQRVA--IARTLLKAPQIVL 84
+ FRN+ F Y P+ IL NI+ ++ G+ + ++ SG K + I R + VL
Sbjct: 4 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 63
Query: 85 LDEATSAL 92
+D AL
Sbjct: 64 IDGHDLAL 71
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 100 bits (248), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 46/92 (50%), Positives = 67/92 (72%)
Query: 50 SFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA 109
+ G+ A LSGG++QR+AIAR L+ P+I++ DEATSALD ++E I ++++C
Sbjct: 130 GYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK 189
Query: 110 SRTTIIVAHRLSTIIHADEILVMHAGEIVERG 141
RT II+AHRLST+ +AD I+VM G+IVE+G
Sbjct: 190 GRTVIIIAHRLSTVKNADRIIVMEKGKIVEQG 221
Score = 57.8 bits (138), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 39/59 (66%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSI 208
VG++G+GKST+ +L+ RFY E+G + ID ++ LR+ +GVV QD VL N SI
Sbjct: 37 VGRAGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSI 95
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 30 VEFRNVSFSYTPER-AILKNISFTVPAGKTLALLS 63
+ FRN+ F Y P+ IL NI+ ++ G+ + ++
Sbjct: 4 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVG 38
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 100 bits (248), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 51/100 (51%), Positives = 70/100 (70%), Gaps = 2/100 (2%)
Query: 44 AILKNI--SFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQ 101
A ++N F G+ LLSGG+KQR+AIAR LLK P+I+LLDEATSALD + E +Q
Sbjct: 464 AFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQ 523
Query: 102 SALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERG 141
AL+R+ RT +++AHRLSTI +A+ + V+ G+I E G
Sbjct: 524 EALDRLMDGRTVLVIAHRLSTIKNANMVAVLDQGKITEYG 563
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 39/59 (66%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSI 208
VG SG+GKST++ LL R YD SG I +D +I+ ++ LR IG V Q+ +LF+ SI
Sbjct: 376 VGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSI 434
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 30/48 (62%), Gaps = 4/48 (8%)
Query: 27 QGAVEFRNVSFSY--TPERAILKNISFTVPAGKTLALL--SGGEKQRV 70
QGA+EF+NV F+Y PE I ++ S ++P+G AL+ SG K V
Sbjct: 339 QGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTV 386
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
Query: 244 QGAVEFRNVSFSY--TPERAILKNISFTVPAGKTLA 277
QGA+EF+NV F+Y PE I ++ S ++P+G A
Sbjct: 339 QGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTA 374
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 99.8 bits (247), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 50/93 (53%), Positives = 66/93 (70%)
Query: 50 SFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA 109
+ G+ LSGG+KQR++IAR L P I++LDEATSALD ++E IQ AL+ +
Sbjct: 466 GYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSK 525
Query: 110 SRTTIIVAHRLSTIIHADEILVMHAGEIVERGS 142
RTT+IVAHRLSTI HAD+I+V+ G IVE G+
Sbjct: 526 DRTTLIVAHRLSTITHADKIVVIENGHIVETGT 558
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 34/60 (56%), Positives = 42/60 (70%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 209
VG SG GKST+I L+ RFYDV SG I ID NIK SLR IG+V QD +LF++++K
Sbjct: 373 VGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVK 432
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 41/70 (58%), Gaps = 3/70 (4%)
Query: 1 MENMFDLLQETCDVIDIPQAPMLCVAQGAVEFRNVSFSYTPERA-ILKNISFTVPAGKTL 59
M+ +F L+ E D+ + A + + QG ++ +VSF Y A ILK+I+ ++ G+T+
Sbjct: 311 MDRVFQLIDEDYDIKNGVGAQPIEIKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETV 370
Query: 60 AL--LSGGEK 67
A +SGG K
Sbjct: 371 AFVGMSGGGK 380
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 207 SIKAIQKNFVDMENMFDLLQETCDVIDIPQAPMLCVAQGAVEFRNVSFSYTPERA-ILKN 265
S + ++F M+ +F L+ E D+ + A + + QG ++ +VSF Y A ILK+
Sbjct: 300 SFTTLTQSFASMDRVFQLIDEDYDIKNGVGAQPIEIKQGRIDIDHVSFQYNDNEAPILKD 359
Query: 266 ISFTVPAGKTLA 277
I+ ++ G+T+A
Sbjct: 360 INLSIEKGETVA 371
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 99.0 bits (245), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 45/92 (48%), Positives = 67/92 (72%)
Query: 50 SFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA 109
+ G+ A LSGG++QR+AIAR L+ P+I++ D+ATSALD ++E I ++++C
Sbjct: 134 GYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVIMRNMHKICK 193
Query: 110 SRTTIIVAHRLSTIIHADEILVMHAGEIVERG 141
RT II+AHRLST+ +AD I+VM G+IVE+G
Sbjct: 194 GRTVIIIAHRLSTVKNADRIIVMEKGKIVEQG 225
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 39/59 (66%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSI 208
VG+SG+GKST+ +L+ RFY E+G + ID ++ LR+ +GVV QD VL N SI
Sbjct: 41 VGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSI 99
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
Query: 30 VEFRNVSFSYTPER-AILKNISFTVPAGKTLALL--SGGEKQRVA--IARTLLKAPQIVL 84
+ FRN+ F Y P+ IL NI+ ++ G+ + ++ SG K + I R + VL
Sbjct: 8 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 67
Query: 85 LDEATSAL 92
+D AL
Sbjct: 68 IDGHDLAL 75
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 98.2 bits (243), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 47/81 (58%), Positives = 65/81 (80%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
LSGGE+QR+AIAR LLK P+IV+ DEATS+LD+KTE Q A+ + +RT II+AHRLS
Sbjct: 156 LSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLS 215
Query: 122 TIIHADEILVMHAGEIVERGS 142
TI A+ I++++ G+IVE+G+
Sbjct: 216 TISSAESIILLNKGKIVEKGT 236
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 34/60 (56%), Positives = 46/60 (76%), Gaps = 1/60 (1%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 209
VG +G+GKSTI +LL+RFYD E GDI I +N+ ++ S+R IG+VPQDT+LFN +IK
Sbjct: 52 VGHTGSGKSTIAKLLYRFYDAE-GDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIK 110
Score = 34.3 bits (77), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 30 VEFRNVSFSYTPE--RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLK 78
+EF +V+FSY + LK+I+F +P+G T AL+ + IA+ L +
Sbjct: 18 IEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYR 68
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Query: 247 VEFRNVSFSYTPE--RAILKNISFTVPAGKTLA 277
+EF +V+FSY + LK+I+F +P+G T A
Sbjct: 18 IEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCA 50
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 97.4 bits (241), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 50/100 (50%), Positives = 69/100 (69%), Gaps = 2/100 (2%)
Query: 44 AILKNI--SFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQ 101
A ++N F G+ LLSGG+KQR+AIAR LLK P+I+LLDEATSALD + E +Q
Sbjct: 495 AFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQ 554
Query: 102 SALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERG 141
AL+R+ RT +++AH LSTI +A+ + V+ G+I E G
Sbjct: 555 EALDRLMDGRTVLVIAHHLSTIKNANMVAVLDQGKITEYG 594
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 39/59 (66%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSI 208
VG SG+GKST++ LL R YD SG I +D +I+ ++ LR IG V Q+ +LF+ SI
Sbjct: 407 VGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSI 465
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 30/48 (62%), Gaps = 4/48 (8%)
Query: 27 QGAVEFRNVSFSYT--PERAILKNISFTVPAGKTLALL--SGGEKQRV 70
QGA+EF+NV F+Y PE I ++ S ++P+G AL+ SG K V
Sbjct: 370 QGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTV 417
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
Query: 244 QGAVEFRNVSFSYT--PERAILKNISFTVPAGKTLA 277
QGA+EF+NV F+Y PE I ++ S ++P+G A
Sbjct: 370 QGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTA 405
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 96.3 bits (238), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 45/92 (48%), Positives = 66/92 (71%)
Query: 50 SFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA 109
+ G+ A LSGG++QR+AIAR L+ P+I++ DEATSALD ++E I ++++C
Sbjct: 128 GYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK 187
Query: 110 SRTTIIVAHRLSTIIHADEILVMHAGEIVERG 141
RT II+A RLST+ +AD I+VM G+IVE+G
Sbjct: 188 GRTVIIIAARLSTVKNADRIIVMEKGKIVEQG 219
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 39/59 (66%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSI 208
VG+SG+GKST+ +L+ RFY E+G + ID ++ LR+ +GVV QD VL N SI
Sbjct: 35 VGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSI 93
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 30 VEFRNVSFSYTPER-AILKNISFTVPAGKTLALLS 63
+ FRN+ F Y P+ IL NI+ ++ G+ + ++
Sbjct: 2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVG 36
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 96.3 bits (238), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 45/92 (48%), Positives = 66/92 (71%)
Query: 50 SFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA 109
+ G+ A LSGG++QR+AIAR L+ P+I++ DEATSALD ++E I ++++C
Sbjct: 134 GYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK 193
Query: 110 SRTTIIVAHRLSTIIHADEILVMHAGEIVERG 141
RT II+A RLST+ +AD I+VM G+IVE+G
Sbjct: 194 GRTVIIIAARLSTVKNADRIIVMEKGKIVEQG 225
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 39/59 (66%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSI 208
VG+SG+GKST+ +L+ RFY E+G + ID ++ LR+ +GVV QD VL N SI
Sbjct: 41 VGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSI 99
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 30 VEFRNVSFSYTPER-AILKNISFTVPAGKTLALLS 63
+ FRN+ F Y P+ IL NI+ ++ G+ + ++
Sbjct: 8 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVG 42
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 91.7 bits (226), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 42/101 (41%), Positives = 70/101 (69%), Gaps = 2/101 (1%)
Query: 43 RAILKNI--SFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNI 100
R+ ++N+ G+ +SGG++QR+AIAR L+ P+I++LDEAT++LD+++E +
Sbjct: 119 RSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMV 178
Query: 101 QSALNRVCASRTTIIVAHRLSTIIHADEILVMHAGEIVERG 141
Q AL+ + RTT+++AHRLSTI+ AD+I + G+I G
Sbjct: 179 QKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSG 219
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 6/80 (7%)
Query: 151 GQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK- 209
G SG GKSTI LL RFY +G+I ID Q I +S + R IG V QD+ + +I+
Sbjct: 35 GPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRE 94
Query: 210 ----AIQKNFVDMENMFDLL 225
++ ++ D E+++ +L
Sbjct: 95 NLTYGLEGDYTD-EDLWQVL 113
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 43/81 (53%), Positives = 63/81 (77%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
LS G++Q +AI R L P+I++LDEATS +DTKTE++IQ+A+ ++ +T+II+AHRL+
Sbjct: 492 LSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLN 551
Query: 122 TIIHADEILVMHAGEIVERGS 142
TI +AD I+V+ GEIVE G
Sbjct: 552 TIKNADLIIVLRDGEIVEMGK 572
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 47/60 (78%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 209
VG +G+GK+TI+ LL RFYDV+ G I +D +I+ + ++SLR +IG+V QDT+LF+ ++K
Sbjct: 387 VGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVK 446
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 204 FNNSIKAIQKNFVDMENMFDLLQETCDVIDIPQAPMLCVAQGAVEFRNVSFSYTPERAIL 263
+N IQ E +F++L + + D P A L +G +EF+NV FSY ++ +L
Sbjct: 313 LSNQFNMIQMALASAERIFEIL-DLEEEKDDPDAVELREVRGEIEFKNVWFSYDKKKPVL 371
Query: 264 KNISFTVPAGKTLA 277
K+I+F + G+ +A
Sbjct: 372 KDITFHIKPGQKVA 385
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 4/75 (5%)
Query: 4 MFDLLQETCDVIDIPQAPMLCVAQGAVEFRNVSFSYTPERAILKNISFTVPAGKTLALLS 63
+ DL +E D P A L +G +EF+NV FSY ++ +LK+I+F + G+ +AL+
Sbjct: 333 ILDLEEEKDD----PDAVELREVRGEIEFKNVWFSYDKKKPVLKDITFHIKPGQKVALVG 388
Query: 64 GGEKQRVAIARTLLK 78
+ I L++
Sbjct: 389 PTGSGKTTIVNLLMR 403
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 75.5 bits (184), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 55/81 (67%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
SGG+KQR++IAR L+K P++++LD+ TS++D TE+ I L R TT I+ ++
Sbjct: 480 FSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIP 539
Query: 122 TIIHADEILVMHAGEIVERGS 142
T + AD+ILV+H G++ G+
Sbjct: 540 TALLADKILVLHEGKVAGFGT 560
Score = 57.4 bits (137), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 46/72 (63%), Gaps = 3/72 (4%)
Query: 138 VERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVV 197
V+ GSL L G++G+GKST++ L+ R D E G + +D +++TV LR I V
Sbjct: 366 VKPGSLVAVL---GETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAV 422
Query: 198 PQDTVLFNNSIK 209
PQ+TVLF+ +IK
Sbjct: 423 PQETVLFSGTIK 434
Score = 28.1 bits (61), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 2 ENMFDLLQETCDVIDIPQAPMLCVAQGAVEFRNVSFSYTPER-AILKNISFTVPAGKTLA 60
+ + ++L E + + A L +G+V F NV F Y +L ++F+V G +A
Sbjct: 314 KRVLEVLNEKPAIEEADNALALPNVEGSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVA 373
Query: 61 LLS 63
+L
Sbjct: 374 VLG 376
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 58/95 (61%), Gaps = 2/95 (2%)
Query: 50 SFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRV-- 107
+ G+T LSGG++Q VA+AR L++ P++++LD+ATSALD + +Q L
Sbjct: 145 GYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDQATSALDAGNQLRVQRLLYESPE 204
Query: 108 CASRTTIIVAHRLSTIIHADEILVMHAGEIVERGS 142
ASRT +++ H+LS A IL + G + E+G+
Sbjct: 205 WASRTVLLITHQLSLAERAHHILFLKEGSVCEQGT 239
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 29/60 (48%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 209
VG +G+GKST+ LL Y G + +D + + L + V Q+ +LF S +
Sbjct: 51 VGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFR 110
Score = 32.3 bits (72), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 6/66 (9%)
Query: 27 QGAVEFRNVSFSYT--PERAILKNISFTVPAGKTLALL--SGGEKQRVAIARTLLKAPQ- 81
+G V+F++VSF+Y P +L+ ++FT+ GK AL+ +G K VA L P
Sbjct: 14 KGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTG 73
Query: 82 -IVLLD 86
VLLD
Sbjct: 74 GKVLLD 79
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
Query: 244 QGAVEFRNVSFSYT--PERAILKNISFTVPAGKTLA 277
+G V+F++VSF+Y P +L+ ++FT+ GK A
Sbjct: 14 KGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTA 49
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 56/95 (58%), Gaps = 2/95 (2%)
Query: 50 SFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRV-- 107
+ G+T LSGG++Q VA+AR L++ P++++LD ATSALD + +Q L
Sbjct: 145 GYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPE 204
Query: 108 CASRTTIIVAHRLSTIIHADEILVMHAGEIVERGS 142
ASRT +++ +LS A IL + G + E+G+
Sbjct: 205 WASRTVLLITQQLSLAERAHHILFLKEGSVCEQGT 239
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 29/60 (48%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 209
VG +G+GKST+ LL Y G + +D + + L + V Q+ +LF S +
Sbjct: 51 VGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFR 110
Score = 32.3 bits (72), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 6/66 (9%)
Query: 27 QGAVEFRNVSFSYT--PERAILKNISFTVPAGKTLALL--SGGEKQRVAIARTLLKAPQ- 81
+G V+F++VSF+Y P +L+ ++FT+ GK AL+ +G K VA L P
Sbjct: 14 KGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTG 73
Query: 82 -IVLLD 86
VLLD
Sbjct: 74 GKVLLD 79
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
Query: 244 QGAVEFRNVSFSYT--PERAILKNISFTVPAGKTLA 277
+G V+F++VSF+Y P +L+ ++FT+ GK A
Sbjct: 14 KGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTA 49
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 52/83 (62%), Gaps = 2/83 (2%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHR 119
LSGG++Q VA+AR L++ P +++LD+ATSALD ++ ++ L SR+ +++
Sbjct: 155 LSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQH 214
Query: 120 LSTIIHADEILVMHAGEIVERGS 142
LS + AD IL + G I E G+
Sbjct: 215 LSLVEQADHILFLEGGAIREGGT 237
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 30/60 (50%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 209
VG +G+GKST+ LL Y G + +D + + L + + V Q+ +F S++
Sbjct: 49 VGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQ 108
Score = 31.6 bits (70), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 32/49 (65%), Gaps = 4/49 (8%)
Query: 27 QGAVEFRNVSFSYT--PERAILKNISFTVPAGKTLALL--SGGEKQRVA 71
+G V+F++VSF+Y P+ +L+ ++FT+ G+ AL+ +G K VA
Sbjct: 12 EGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVA 60
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 25/36 (69%), Gaps = 2/36 (5%)
Query: 244 QGAVEFRNVSFSYT--PERAILKNISFTVPAGKTLA 277
+G V+F++VSF+Y P+ +L+ ++FT+ G+ A
Sbjct: 12 EGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTA 47
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 52/84 (61%), Gaps = 3/84 (3%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR--TTIIVAH- 118
LSGG++QRVAIAR L+K P+++LLDE S LD +++ L R+ TT+ V H
Sbjct: 134 LSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHD 193
Query: 119 RLSTIIHADEILVMHAGEIVERGS 142
+ + AD I V+ GEI++ G+
Sbjct: 194 QAEALAMADRIAVIREGEILQVGT 217
Score = 34.3 bits (77), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 35/61 (57%), Gaps = 4/61 (6%)
Query: 144 FVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVL 203
F++LL G SG+GKST++ + Y SG I+ D +++ + + +G+V Q+ L
Sbjct: 31 FMALL--GPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKD--RNVGLVFQNWAL 86
Query: 204 F 204
+
Sbjct: 87 Y 87
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 61.2 bits (147), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 52/88 (59%), Gaps = 5/88 (5%)
Query: 60 ALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHR 119
A LSGGE+QRVA+AR L+ P+++LLDE SA+D KT+ + L R + + H
Sbjct: 125 ARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEEL-RFVQREFDVPILHV 183
Query: 120 LSTIIH----ADEILVMHAGEIVERGSL 143
+I ADE+ VM G IVE+G L
Sbjct: 184 THDLIEAAMLADEVAVMLNGRIVEKGKL 211
Score = 35.8 bits (81), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLF 204
+G +GAGKS + L+ + G++ ++ +I + R+ IG VPQD LF
Sbjct: 30 LGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGIGFVPQDYALF 82
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 60.8 bits (146), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 69/124 (55%), Gaps = 14/124 (11%)
Query: 43 RAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQS 102
R +L+ + A + LSGG++QRVA+AR L PQ++L DE +A+DT+ R +++
Sbjct: 127 RELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRT 186
Query: 103 ALNRVCASR--TTIIVAHRLSTIIH-ADEILVMHAG---------EIVER-GSLFVSLLQ 149
+ +V T++ V H + AD +LV+H G E+ E+ G+LFV+
Sbjct: 187 FVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEKPGTLFVASF- 245
Query: 150 VGQS 153
+G+S
Sbjct: 246 IGES 249
Score = 34.3 bits (77), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNN 206
+G SG+GK+TI+RL+ GD++I + + + ++ +G+V Q+ LF +
Sbjct: 47 LGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQ--KRNVGLVFQNYALFQH 101
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 55/95 (57%), Gaps = 2/95 (2%)
Query: 50 SFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRV-- 107
+ G+T L+ G++Q VA+AR L++ P++++LD ATSALD + +Q L
Sbjct: 145 GYDTEVGETGNQLAVGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPE 204
Query: 108 CASRTTIIVAHRLSTIIHADEILVMHAGEIVERGS 142
ASRT +++ +LS A IL + G + E+G+
Sbjct: 205 WASRTVLLITQQLSLAERAHHILFLKEGSVCEQGT 239
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 29/60 (48%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 209
VG +G+GKST+ LL Y G + +D + + L + V Q+ +LF S +
Sbjct: 51 VGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFR 110
Score = 32.3 bits (72), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 6/66 (9%)
Query: 27 QGAVEFRNVSFSYT--PERAILKNISFTVPAGKTLALL--SGGEKQRVAIARTLLKAPQ- 81
+G V+F++VSF+Y P +L+ ++FT+ GK AL+ +G K VA L P
Sbjct: 14 KGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTG 73
Query: 82 -IVLLD 86
VLLD
Sbjct: 74 GKVLLD 79
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
Query: 244 QGAVEFRNVSFSYT--PERAILKNISFTVPAGKTLA 277
+G V+F++VSF+Y P +L+ ++FT+ GK A
Sbjct: 14 KGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTA 49
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 48/81 (59%), Gaps = 3/81 (3%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHR 119
LSGG++QRVAIAR L P I+L DE T ALD+KT I L ++ +T ++V H
Sbjct: 146 LSGGQQQRVAIARALANNPPIILADEPTGALDSKTGEKIXQLLKKLNEEDGKTVVVVTHD 205
Query: 120 LSTIIHADEILVMHAGEIVER 140
++ + I+ + GE VER
Sbjct: 206 INVARFGERIIYLKDGE-VER 225
Score = 27.7 bits (60), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 6/60 (10%)
Query: 144 FVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASL----RQAIGVVPQ 199
FVS+ G SG+GKST + ++ G+++IDN + L R IG V Q
Sbjct: 33 FVSI--XGPSGSGKSTXLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQ 90
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 52/85 (61%), Gaps = 5/85 (5%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAH--- 118
LSGGE+QRVA+AR L+ P+I+LLDE SALD +T+ N + L+ V + + V H
Sbjct: 128 LSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLS-VLHKKNKLTVLHITH 186
Query: 119 -RLSTIIHADEILVMHAGEIVERGS 142
+ I AD I V+ G++++ G
Sbjct: 187 DQTEARIMADRIAVVMDGKLIQVGK 211
Score = 35.4 bits (80), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 5/67 (7%)
Query: 138 VERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVV 197
VE G FV L G +GAGK+ + L+ F+ +SG I +D +++ +S + I V
Sbjct: 23 VESGEYFVIL---GPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPE--KHDIAFV 77
Query: 198 PQDTVLF 204
Q+ LF
Sbjct: 78 YQNYSLF 84
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 48/81 (59%), Gaps = 3/81 (3%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHR 119
LSGG++QRVAIAR L P I+L D+ T ALD+KT I L ++ +T ++V H
Sbjct: 146 LSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHD 205
Query: 120 LSTIIHADEILVMHAGEIVER 140
++ + I+ + GE VER
Sbjct: 206 INVARFGERIIYLKDGE-VER 225
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 6/60 (10%)
Query: 144 FVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASL----RQAIGVVPQ 199
FVS++ G SG+GKST++ ++ G+++IDN + L R IG V Q
Sbjct: 33 FVSIM--GPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQ 90
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 68/139 (48%), Gaps = 7/139 (5%)
Query: 5 FDLLQETCDVIDIPQAPMLCVAQGAVEFRNVSFSYTPERAILKNISFTVPAGKTLALLSG 64
F+L + ++ +AP+ + + R + Y + I + GK LSG
Sbjct: 102 FNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQ-----GKYPVHLSG 156
Query: 65 GEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVC-ASRTTIIVAHRLSTI 123
G++QRV+IAR L P ++L DE TSALD + + + ++ +T ++V H +
Sbjct: 157 GQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFA 216
Query: 124 IH-ADEILVMHAGEIVERG 141
H + ++ +H G+I E G
Sbjct: 217 RHVSSHVIFLHQGKIEEEG 235
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 48/81 (59%), Gaps = 3/81 (3%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHR 119
LSGG++QRVAIAR L P I+L D+ T ALD+KT I L ++ +T ++V H
Sbjct: 146 LSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHD 205
Query: 120 LSTIIHADEILVMHAGEIVER 140
++ + I+ + GE VER
Sbjct: 206 INVARFGERIIYLKDGE-VER 225
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 6/60 (10%)
Query: 144 FVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASL----RQAIGVVPQ 199
FVS++ G SG+GKST++ ++ G+++IDN + L R IG V Q
Sbjct: 33 FVSIM--GPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQ 90
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 46/83 (55%), Gaps = 2/83 (2%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVC-ASRTTIIVAHRL 120
LSGG+ QRVAIAR L P+I+L DE TSALD + + S + ++ T ++V H +
Sbjct: 160 LSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEM 219
Query: 121 STIIH-ADEILVMHAGEIVERGS 142
D +L M G I+E G
Sbjct: 220 GFAREVGDRVLFMDGGYIIEEGK 242
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKT--VSQASLRQAIGVVPQDTVLF 204
+G SG+GKST +R L D + G+I ID N+K + +R+ +G+V Q LF
Sbjct: 56 IGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLF 112
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 46/83 (55%), Gaps = 2/83 (2%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVC-ASRTTIIVAHRL 120
LSGG+ QRVAIAR L P+I+L DE TSALD + + S + ++ T ++V H +
Sbjct: 139 LSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEM 198
Query: 121 STIIH-ADEILVMHAGEIVERGS 142
D +L M G I+E G
Sbjct: 199 GFAREVGDRVLFMDGGYIIEEGK 221
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKT--VSQASLRQAIGVVPQDTVLF 204
+G SG+GKST +R L D + G+I ID N+K + +R+ +G+V Q LF
Sbjct: 35 IGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLF 91
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 52/85 (61%), Gaps = 3/85 (3%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHR 119
LSGG+KQRVAIAR L P+++L DEATSALD T R+I L + T +++ H
Sbjct: 141 LSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHE 200
Query: 120 LSTIIH-ADEILVMHAGEIVERGSL 143
+ + D + V+ GE++E+ ++
Sbjct: 201 MDVVKRICDCVAVISNGELIEQDTV 225
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 32/53 (60%), Gaps = 3/53 (5%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASL---RQAIGVVPQ 199
+G SGAGKST+IR + G + +D Q + T+S++ L R+ IG++ Q
Sbjct: 37 IGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQ 89
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 52/85 (61%), Gaps = 3/85 (3%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHR 119
LSGG+KQRVAIAR L P+++L D+ATSALD T R+I L + T +++ H
Sbjct: 164 LSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHE 223
Query: 120 LSTIIH-ADEILVMHAGEIVERGSL 143
+ + D + V+ GE++E+ ++
Sbjct: 224 MDVVKRICDCVAVISNGELIEQDTV 248
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 32/53 (60%), Gaps = 3/53 (5%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASL---RQAIGVVPQ 199
+G SGAGKST+IR + G + +D Q + T+S++ L R+ IG++ Q
Sbjct: 60 IGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQ 112
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 50/84 (59%), Gaps = 3/84 (3%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAH- 118
LSGG++QRVAI RTL+ P + LLDE S LD ++ ++R+ RT I V H
Sbjct: 134 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHD 193
Query: 119 RLSTIIHADEILVMHAGEIVERGS 142
++ + AD+I+V+ AG + + G
Sbjct: 194 QVEAMTLADKIVVLDAGRVAQVGK 217
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 11/82 (13%)
Query: 123 IIHADEILVMHAGEIVERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNI 182
++ D L +H GE V +FV G SG GKST++R++ + SGD+FI + +
Sbjct: 17 VVSKDINLDIHEGEFV----VFV-----GPSGCGKSTLLRMIAGLETITSGDLFIGEKRM 67
Query: 183 KTVSQASLRQAIGVVPQDTVLF 204
A + +G+V Q L+
Sbjct: 68 NDTPPAE--RGVGMVFQSYALY 87
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 50/84 (59%), Gaps = 3/84 (3%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAH- 118
LSGG++QRVAI RTL+ P + LLDE S LD ++ ++R+ RT I V H
Sbjct: 134 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHD 193
Query: 119 RLSTIIHADEILVMHAGEIVERGS 142
++ + AD+I+V+ AG + + G
Sbjct: 194 QVEAMTLADKIVVLDAGRVAQVGK 217
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 11/82 (13%)
Query: 123 IIHADEILVMHAGEIVERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNI 182
++ D L +H GE V +FV G SG GKST++R++ + SGD+FI + +
Sbjct: 17 VVSKDINLDIHEGEFV----VFV-----GPSGCGKSTLLRMIAGLETITSGDLFIGEKRM 67
Query: 183 KTVSQASLRQAIGVVPQDTVLF 204
A + +G+V Q L+
Sbjct: 68 NDTPPAE--RGVGMVFQSYALY 87
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 48/75 (64%), Gaps = 1/75 (1%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNI-QSALNRVCASRTTIIVAHRL 120
LSGG++ R+++AR + K + LLD LD TE+ I +S + ++ A++T I+V ++
Sbjct: 143 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKM 202
Query: 121 STIIHADEILVMHAG 135
+ AD+IL++H G
Sbjct: 203 EHLKKADKILILHEG 217
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 48/75 (64%), Gaps = 1/75 (1%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNI-QSALNRVCASRTTIIVAHRL 120
LSGG++ R+++AR + K + LLD LD TE+ I +S + ++ A++T I+V ++
Sbjct: 161 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKM 220
Query: 121 STIIHADEILVMHAG 135
+ AD+IL++H G
Sbjct: 221 EHLKKADKILILHEG 235
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 48/75 (64%), Gaps = 1/75 (1%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNI-QSALNRVCASRTTIIVAHRL 120
LSGG++ R+++AR + K + LLD LD TE+ I +S + ++ A++T I+V ++
Sbjct: 131 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKM 190
Query: 121 STIIHADEILVMHAG 135
+ AD+IL++H G
Sbjct: 191 EHLKKADKILILHEG 205
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 48/75 (64%), Gaps = 1/75 (1%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNI-QSALNRVCASRTTIIVAHRL 120
LSGG++ R+++AR + K + LLD LD TE+ I +S + ++ A++T I+V ++
Sbjct: 160 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKM 219
Query: 121 STIIHADEILVMHAG 135
+ AD+IL++H G
Sbjct: 220 EHLKKADKILILHEG 234
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 48/75 (64%), Gaps = 1/75 (1%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNI-QSALNRVCASRTTIIVAHRL 120
LSGG++ R+++AR + K + LLD LD TE+ I +S + ++ A++T I+V ++
Sbjct: 130 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKM 189
Query: 121 STIIHADEILVMHAG 135
+ AD+IL++H G
Sbjct: 190 EHLKKADKILILHEG 204
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 48/75 (64%), Gaps = 1/75 (1%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNI-QSALNRVCASRTTIIVAHRL 120
LSGG++ R+++AR + K + LLD LD TE+ I +S + ++ A++T I+V ++
Sbjct: 160 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKM 219
Query: 121 STIIHADEILVMHAG 135
+ AD+IL++H G
Sbjct: 220 EHLKKADKILILHEG 234
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 51/84 (60%), Gaps = 2/84 (2%)
Query: 61 LLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRV-CASRTTIIVAHR 119
LSGGEK+RVAIA ++ P I++LDE LD + + ++ + + +T I+++H
Sbjct: 140 FLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHD 199
Query: 120 LSTII-HADEILVMHAGEIVERGS 142
+ T+I H D ++V+ G+ V G+
Sbjct: 200 IETVINHVDRVVVLEKGKKVFDGT 223
Score = 32.0 bits (71), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 147 LLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVV---PQD 200
LL G +G+GKST+++++ + SGD+ D + K +R+ IG+ P+D
Sbjct: 38 LLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY---EIRRNIGIAFQYPED 91
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 51/84 (60%), Gaps = 2/84 (2%)
Query: 61 LLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRV-CASRTTIIVAHR 119
LSGGEK+RVAIA ++ P I++LDE LD + + ++ + + +T I+++H
Sbjct: 138 FLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHD 197
Query: 120 LSTII-HADEILVMHAGEIVERGS 142
+ T+I H D ++V+ G+ V G+
Sbjct: 198 IETVINHVDRVVVLEKGKKVFDGT 221
Score = 32.0 bits (71), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 147 LLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVV---PQD 200
LL G +G+GKST+++++ + SGD+ D + K +R+ IG+ P+D
Sbjct: 36 LLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY---EIRRNIGIAFQYPED 89
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 48/84 (57%), Gaps = 3/84 (3%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSAL---NRVCASRTTIIVAH 118
LSGG+KQRV++AR + I L D+ SA+D ++I + + ++T I+V H
Sbjct: 128 LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTH 187
Query: 119 RLSTIIHADEILVMHAGEIVERGS 142
+S + D I+VM G+I E GS
Sbjct: 188 SMSYLPQVDVIIVMSGGKISEMGS 211
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 50/84 (59%), Gaps = 3/84 (3%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAH- 118
LSGG++QRVA+ R +++ PQ+ L+DE S LD K +++ L ++ TTI V H
Sbjct: 140 LSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHD 199
Query: 119 RLSTIIHADEILVMHAGEIVERGS 142
++ + D I VM+ G + + GS
Sbjct: 200 QVEAMTMGDRIAVMNRGVLQQVGS 223
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 50/84 (59%), Gaps = 3/84 (3%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAH- 118
LSGG++QRVAI RTL+ P + LLD+ S LD ++ ++R+ RT I V H
Sbjct: 134 LSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHD 193
Query: 119 RLSTIIHADEILVMHAGEIVERGS 142
++ + AD+I+V+ AG + + G
Sbjct: 194 QVEAMTLADKIVVLDAGRVAQVGK 217
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 11/82 (13%)
Query: 123 IIHADEILVMHAGEIVERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNI 182
++ D L +H GE V +FV G SG GKST++R++ + SGD+FI + +
Sbjct: 17 VVSKDINLDIHEGEFV----VFV-----GPSGCGKSTLLRMIAGLETITSGDLFIGEKRM 67
Query: 183 KTVSQASLRQAIGVVPQDTVLF 204
A + +G+V Q L+
Sbjct: 68 NDTPPAE--RGVGMVFQSYALY 87
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 51/85 (60%), Gaps = 3/85 (3%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAHR 119
LSGG+KQRVAIAR L P+++L D+ATSALD T R+I L + T +++ H
Sbjct: 164 LSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHE 223
Query: 120 LSTIIH-ADEILVMHAGEIVERGSL 143
+ D + V+ GE++E+ ++
Sbjct: 224 XDVVKRICDCVAVISNGELIEQDTV 248
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASL---RQAIGVVPQ 199
+G SGAGKST+IR + G + +D Q + T+S++ L R+ IG + Q
Sbjct: 60 IGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGXIFQ 112
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 53/86 (61%), Gaps = 3/86 (3%)
Query: 60 ALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR--TTIIVA 117
A LSGG++QRVA+AR ++ P ++L+DE S LD K +++ + ++ TTI V
Sbjct: 140 AQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVT 199
Query: 118 H-RLSTIIHADEILVMHAGEIVERGS 142
H ++ + D I VM+ G++++ GS
Sbjct: 200 HDQVEAMTMGDRIAVMNRGQLLQIGS 225
Score = 28.1 bits (61), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 9/80 (11%)
Query: 147 LLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNI-----KTVSQASLRQAIGVVPQDT 201
L+ +G SG GK+T +R++ + G I+ ++++ K + + + Q+ V P T
Sbjct: 40 LVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMT 99
Query: 202 VL----FNNSIKAIQKNFVD 217
V F IK K+ +D
Sbjct: 100 VYENIAFPLKIKKFPKDEID 119
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 53/86 (61%), Gaps = 3/86 (3%)
Query: 60 ALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR--TTIIVA 117
A LSGG++QRVA+AR ++ P ++L+DE S LD K +++ + ++ TTI V
Sbjct: 141 AQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVT 200
Query: 118 H-RLSTIIHADEILVMHAGEIVERGS 142
H ++ + D I VM+ G++++ GS
Sbjct: 201 HDQVEAMTMGDRIAVMNRGQLLQIGS 226
Score = 28.1 bits (61), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 9/80 (11%)
Query: 147 LLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNI-----KTVSQASLRQAIGVVPQDT 201
L+ +G SG GK+T +R++ + G I+ ++++ K + + + Q+ V P T
Sbjct: 41 LVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMT 100
Query: 202 VL----FNNSIKAIQKNFVD 217
V F IK K+ +D
Sbjct: 101 VYENIAFPLKIKKFPKDEID 120
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Query: 56 GKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNI-QSALNRVCASRTTI 114
G+ LSGG++ R+++AR + K + LLD LD TE + +S + ++ A++T I
Sbjct: 155 GEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRI 214
Query: 115 IVAHRLSTIIHADEILVMHAG 135
+V ++ + AD+IL++H G
Sbjct: 215 LVTSKMEHLRKADKILILHQG 235
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 54.7 bits (130), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Query: 56 GKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNI-QSALNRVCASRTTI 114
G+ LSGG++ R+++AR + K + LLD LD TE + +S + ++ A++T I
Sbjct: 155 GEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRI 214
Query: 115 IVAHRLSTIIHADEILVMHAG 135
+V ++ + AD+IL++H G
Sbjct: 215 LVTSKMEHLRKADKILILHQG 235
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 54.7 bits (130), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Query: 56 GKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNI-QSALNRVCASRTTI 114
G+ LSGG++ R+++AR + K + LLD LD TE + +S + ++ A++T I
Sbjct: 154 GEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRI 213
Query: 115 IVAHRLSTIIHADEILVMHAG 135
+V ++ + AD+IL++H G
Sbjct: 214 LVTSKMEHLRKADKILILHQG 234
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Query: 56 GKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNI-QSALNRVCASRTTI 114
G+ LSGG++ R+++AR + K + LLD LD TE + +S + ++ A++T I
Sbjct: 155 GEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRI 214
Query: 115 IVAHRLSTIIHADEILVMHAG 135
+V ++ + AD+IL++H G
Sbjct: 215 LVTSKMEHLRKADKILILHQG 235
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Query: 56 GKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNI-QSALNRVCASRTTI 114
G+ LSGG++ R+++AR + K + LLD LD TE + +S + ++ A++T I
Sbjct: 155 GEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRI 214
Query: 115 IVAHRLSTIIHADEILVMHAG 135
+V ++ + AD+IL++H G
Sbjct: 215 LVTSKMEHLRKADKILILHQG 235
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 54.3 bits (129), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 53/85 (62%), Gaps = 5/85 (5%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR---TTIIVAH 118
LSGG++QRVA+AR L+K P ++LLDE S LD + R+ AL + SR T ++V+H
Sbjct: 141 LSGGQQQRVALARALVKDPSLLLLDEPFSNLDARM-RDSARALVKEVQSRLGVTLLVVSH 199
Query: 119 RLSTIIH-ADEILVMHAGEIVERGS 142
+ I AD + V+ G++V+ G
Sbjct: 200 DPADIFAIADRVGVLVKGKLVQVGK 224
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 8/73 (10%)
Query: 138 VERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQ----NIKTVSQASLRQA 193
+E G F L G SGAGK+T +R++ +G+++ D++ N K + R+
Sbjct: 28 IENGERFGIL---GPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRK- 83
Query: 194 IGVVPQDTVLFNN 206
IG+V Q L+ N
Sbjct: 84 IGMVFQTWALYPN 96
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 50/86 (58%), Gaps = 3/86 (3%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERN-IQSALNRVCASRTTII-VAHR 119
LSGG KQRV IA LL P +++LDE TSALD T+ + IQ + T+I V H
Sbjct: 155 LSGGMKQRVLIALALLLDPVVLILDEPTSALDVLTQAHIIQLLKELKKMLKITLIFVTHD 214
Query: 120 LSTIIH-ADEILVMHAGEIVERGSLF 144
++ AD++ V++ G +VE S F
Sbjct: 215 IAVAAELADKVAVIYGGNLVEYNSTF 240
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 8/76 (10%)
Query: 150 VGQSGAGKSTIIRLLFRFYD----VESGDIFIDNQNIKTVSQASLR----QAIGVVPQDT 201
VG+S +GKSTII + + + SG + +++ T+ + LR + I +VPQ
Sbjct: 40 VGESASGKSTIIEAMTKTLPPNGRILSGRVLYKGKDLLTMREEELRKIRWKEIALVPQAA 99
Query: 202 VLFNNSIKAIQKNFVD 217
N + ++F D
Sbjct: 100 QQSLNPTMKVIEHFKD 115
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 52/85 (61%), Gaps = 5/85 (5%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR---TTIIVAH 118
LSG ++QRVA+AR L+K P ++LLDE S LD + R+ AL + SR T ++V+H
Sbjct: 141 LSGAQQQRVALARALVKDPSLLLLDEPFSNLDARM-RDSARALVKEVQSRLGVTLLVVSH 199
Query: 119 RLSTIIH-ADEILVMHAGEIVERGS 142
+ I AD + V+ G++V+ G
Sbjct: 200 DPADIFAIADRVGVLVKGKLVQVGK 224
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 8/73 (10%)
Query: 138 VERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQ----NIKTVSQASLRQA 193
+E G F L G SGAGK+T +R++ +G+++ D++ N K + R+
Sbjct: 28 IENGERFGIL---GPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRK- 83
Query: 194 IGVVPQDTVLFNN 206
IG+V Q L+ N
Sbjct: 84 IGMVFQTWALYPN 96
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNI-QSALNRVCASRTTIIVAHRL 120
LS G++ ++++AR + K + LLD LD TE+ I +S + ++ A++T I+V ++
Sbjct: 161 LSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKM 220
Query: 121 STIIHADEILVMHAG 135
+ AD+IL++H G
Sbjct: 221 EHLKKADKILILHEG 235
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain
With Atp
Length = 290
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNI-QSALNRVCASRTTIIVAHRL 120
LS G++ ++++AR + K + LLD LD TE+ I +S + ++ A++T I+V ++
Sbjct: 160 LSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKM 219
Query: 121 STIIHADEILVMHAG 135
+ AD+IL++H G
Sbjct: 220 EHLKKADKILILHEG 234
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 47/84 (55%), Gaps = 3/84 (3%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA--SRTTIIVAH- 118
LSGG++QRVA+ R +++ P++ L DE S LD K ++ L ++ TTI V H
Sbjct: 143 LSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAKLRVKXRAELKKLQRQLGVTTIYVTHD 202
Query: 119 RLSTIIHADEILVMHAGEIVERGS 142
++ D I V + GE+ + G+
Sbjct: 203 QVEAXTXGDRIAVXNKGELQQVGT 226
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS--RTTIIVAHR 119
LSGGE QRVAIA TLL+ I LLDE ++ LD + + A+ + +T ++V H
Sbjct: 472 LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHD 531
Query: 120 LSTIIHADEILVMHAGEIVERG 141
+ I + + L++ GE G
Sbjct: 532 VLMIDYVSDRLIVFEGEPGRHG 553
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 57 KTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVC-ASRTTII 115
+ L LSGGE QRVAIA LL+ DE +S LD + + + R+ + ++
Sbjct: 224 RELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLV 283
Query: 116 VAHRLSTIIHADEILVMHAGE 136
V H L+ + + +++ + GE
Sbjct: 284 VEHDLAVLDYLSDVIHVVYGE 304
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS--RTTIIVAHR 119
LSGGE QRVAIA TLL+ I LLDE ++ LD + + A+ + +T ++V H
Sbjct: 458 LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHD 517
Query: 120 LSTIIHADEILVMHAGEIVERG 141
+ I + + L++ GE G
Sbjct: 518 VLMIDYVSDRLIVFEGEPGRHG 539
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 57 KTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVC-ASRTTII 115
+ L LSGGE QRVAIA LL+ DE +S LD + + + R+ + ++
Sbjct: 210 RELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLV 269
Query: 116 VAHRLSTIIHADEILVMHAGE 136
V H L+ + + +++ + GE
Sbjct: 270 VEHDLAVLDYLSDVIHVVYGE 290
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 49/84 (58%), Gaps = 3/84 (3%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR--TTIIVAH- 118
LSGG++QRVA+AR L+K P+++L DE S LD +++ + + T++ V H
Sbjct: 134 LSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHD 193
Query: 119 RLSTIIHADEILVMHAGEIVERGS 142
+ + A I V + G++V+ G+
Sbjct: 194 QAEAMTMASRIAVFNQGKLVQYGT 217
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 144 FVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVL 203
FV+LL G SG GK+T + +L Y SG+I+ D+ + + + +G+V Q+ L
Sbjct: 31 FVALL--GPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKY--REVGMVFQNYAL 86
Query: 204 F 204
+
Sbjct: 87 Y 87
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 53/101 (52%), Gaps = 4/101 (3%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRV-CASRTTIIVAH-- 118
SGGEK+R I + + P++ +LDE+ S LD + + +N + R+ IIV H
Sbjct: 146 FSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQ 205
Query: 119 RLSTIIHADEILVMHAGEIVERGSLFVSLLQVGQSGAGKST 159
R+ I D + V++ G IV+ G F + Q+ + G G T
Sbjct: 206 RILDYIKPDYVHVLYQGRIVKSGD-FTLVKQLEEQGYGWLT 245
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 53/101 (52%), Gaps = 4/101 (3%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRV-CASRTTIIVAH-- 118
SGGEK+R I + + P++ +LDE+ S LD + + +N + R+ IIV H
Sbjct: 165 FSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQ 224
Query: 119 RLSTIIHADEILVMHAGEIVERGSLFVSLLQVGQSGAGKST 159
R+ I D + V++ G IV+ G F + Q+ + G G T
Sbjct: 225 RILDYIKPDYVHVLYQGRIVKSGD-FTLVKQLEEQGYGWLT 264
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCAS--RTTIIVAHR 119
LSGGE QRVAIA TLL+ I LLDE ++ LD + + A+ + +T ++V H
Sbjct: 402 LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLXEKNEKTALVVEHD 461
Query: 120 LSTIIHADEILVMHAGE 136
+ I + + L + GE
Sbjct: 462 VLXIDYVSDRLXVFEGE 478
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVC-ASRTTIIVAHRL 120
LSGGE QRVAIA LL+ DE +S LD + N A+ R+ ++ ++V H L
Sbjct: 159 LSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDL 218
Query: 121 STIIHADEILVMHAGE 136
+ + + +I+ + GE
Sbjct: 219 AVLDYLSDIIHVVYGE 234
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 48/84 (57%)
Query: 61 LLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRL 120
+LS G KQ + +AR++L +I+LLDE ++ LD T + I+ L + A T I+ R+
Sbjct: 155 VLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARI 214
Query: 121 STIIHADEILVMHAGEIVERGSLF 144
++ D+ LV+ ++ + S+
Sbjct: 215 EAMLECDQFLVIEENKVRQYDSIL 238
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVLFNNSIK 209
+G++G+GKST++ R + E G+I ID + +++ R+A GV+PQ +F+ + +
Sbjct: 53 LGRTGSGKSTLLSAFLRLLNTE-GEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFR 111
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRV-CASRTTIIVAHRL 120
LSGG+KQR+AIA L + + + LDE S LD ++R I L + + I+V H L
Sbjct: 141 LSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQREIFQVLESLKNEGKGIILVTHEL 200
Query: 121 STIIHADEILVMHAGEI 137
+ D IL + G I
Sbjct: 201 EYLDDMDFILHISNGTI 217
Score = 32.3 bits (72), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 11/84 (13%)
Query: 139 ERGSLFVSLLQVGQSGAGKSTIIRLLFR--------FYDVESGDIFIDNQNIKTVSQASL 190
E G ++V VG++G+GK+T++++L F D D F+ +N+ V Q
Sbjct: 35 ETGKIYVV---VGKNGSGKTTLLKILAGLLAAAGEIFLDGSPADPFLLRKNVGYVFQNPS 91
Query: 191 RQAIGVVPQDTVLFNNSIKAIQKN 214
Q IG ++ V F+ I + ++
Sbjct: 92 SQIIGATVEEDVAFSLEIMGLDES 115
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 59/125 (47%), Gaps = 14/125 (11%)
Query: 32 FRNVSFSYT----PERAILKNISFTVP-------AGKTLALLSGGEKQRVAIARTLLKAP 80
+++VSF PE I K + + K LS G+K+RVAIA L+ P
Sbjct: 103 YQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEP 162
Query: 81 QIVLLDEATSALDTKTERNIQSALNRVCASR--TTIIVAHRLSTI-IHADEILVMHAGEI 137
++++LDE T+ LD I L + T II H + + ++ D + VM G +
Sbjct: 163 KVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRV 222
Query: 138 VERGS 142
+ +G+
Sbjct: 223 ILQGN 227
Score = 32.3 bits (72), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQA--SLRQAIGVVPQ--DTVLFN 205
+G +G GKST+ + SG I DN+ I + LR++IG+V Q D LF+
Sbjct: 40 LGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFS 99
Query: 206 NSI 208
S+
Sbjct: 100 ASV 102
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 31/49 (63%)
Query: 45 ILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALD 93
+LK + + A + + LS GEKQRV IAR L PQ+++LDE + LD
Sbjct: 145 LLKLVGXSAKAQQYIGYLSTGEKQRVXIARALXGQPQVLILDEPAAGLD 193
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 42/78 (53%), Gaps = 7/78 (8%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRT--TIIVAHR 119
LSGGE Q++ IA TL K + +LD+ +S LD + + A+ RV R T I+ H
Sbjct: 386 LSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHD 445
Query: 120 LSTIIH---ADEILVMHA 134
LS IH AD I+V
Sbjct: 446 LS--IHDYIADRIIVFKG 461
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 44/80 (55%)
Query: 57 KTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIV 116
K +LSGG QR+ +A +LL+ + + D+ +S LD + N+ A+ + ++ I+V
Sbjct: 134 KDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVV 193
Query: 117 AHRLSTIIHADEILVMHAGE 136
H L + + +++ + GE
Sbjct: 194 DHDLIVLDYLTDLIHIIYGE 213
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTII-VAH-- 118
LSGGE+QRVAIAR L P ++ DE T LD+ + + ++ T+I+ V H
Sbjct: 141 LSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHER 200
Query: 119 RLSTIIHADEILVMHAGEIV 138
L+ + H L M G++V
Sbjct: 201 ELAELTH--RTLEMKDGKVV 218
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 4/77 (5%)
Query: 114 IIVAHRLSTIIHADEILVMHAGEIVERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESG 173
I+ A + +I EIL V++G FVS+ +G SG+GKST++ +L G
Sbjct: 4 ILRAENIKKVIRGYEIL-KGISLSVKKGE-FVSI--IGASGSGKSTLLYILGLLDAPTEG 59
Query: 174 DIFIDNQNIKTVSQASL 190
+F++ + + ++ L
Sbjct: 60 KVFLEGKEVDYTNEKEL 76
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Query: 63 SGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHR--L 120
S G +++ IAR L+ P++ +LDE TS LD R ++ L + TI+V+ L
Sbjct: 148 SKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNML 207
Query: 121 STIIHADEILVMHAGEIVERGSL 143
D I ++H G IVE G++
Sbjct: 208 EVEFLCDRIALIHNGTIVETGTV 230
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 5/92 (5%)
Query: 115 IVAHRLSTIIHADEILVMHAGEIVERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGD 174
+V L I EIL + EI E G +F +G +GAGK+T +R++ SG
Sbjct: 16 VVVKDLRKRIGKKEILKGISFEI-EEGEIFG---LIGPNGAGKTTTLRIISTLIKPSSGI 71
Query: 175 IFIDNQNIKTVSQASLRQAIGVVPQDTVLFNN 206
+ + +N+ +R+ I +P++ + N
Sbjct: 72 VTVFGKNV-VEEPHEVRKLISYLPEEAGAYRN 102
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 53/97 (54%), Gaps = 9/97 (9%)
Query: 55 AGKTLALLSGGEKQRVAIARTLLK------APQIVLLDEATSALDTKTERNIQSALNRVC 108
A + +LSGGE+QRV +AR L + P+ + LDE TSALD +++ L ++
Sbjct: 135 AQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLT 194
Query: 109 ASRTTII--VAHRLS-TIIHADEILVMHAGEIVERGS 142
+ V H L+ ++AD I+++ G++V G+
Sbjct: 195 RQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGT 231
Score = 34.7 bits (78), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 30/54 (55%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIGVVPQDTVL 203
+G +GAGKST++RLL + G+ + QN+ + +L + V+ Q + L
Sbjct: 43 IGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAVMRQYSEL 96
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 43.9 bits (102), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNI-QSALNRVCASRTTIIVAHRL 120
LSGG+ + V I R L+ P+++++DE + + +I L T +I+ HRL
Sbjct: 154 LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRL 213
Query: 121 STII-HADEILVMHAGEIVERG 141
++ + D + VM G+I+ G
Sbjct: 214 DIVLNYIDHLYVMFNGQIIAEG 235
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 26/45 (57%)
Query: 148 LQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQ 192
L +G +G+GKST+I ++ F + G ++ +N++I A L
Sbjct: 37 LIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYH 81
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 43.9 bits (102), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNI-QSALNRVCASRTTIIVAHRL 120
LSGG+ + V I R L+ P+++++DE + + +I L T +I+ HRL
Sbjct: 154 LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRL 213
Query: 121 STII-HADEILVMHAGEIVERG 141
++ + D + VM G+I+ G
Sbjct: 214 DIVLNYIDHLYVMFNGQIIAEG 235
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 26/45 (57%)
Query: 148 LQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQ 192
L +G +G+GKST+I ++ F + G ++ +N++I A L
Sbjct: 37 LIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYH 81
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 43.1 bits (100), Expect = 2e-04, Method: Composition-based stats.
Identities = 29/82 (35%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Query: 53 VPAGKTLALLSGGEKQRVAIARTLLK---APQIVLLDEATSALDTKTERNIQSALNR-VC 108
V G+ LSGGE QR+ +A L K + +LDE T L + R + L+R V
Sbjct: 797 VKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVD 856
Query: 109 ASRTTIIVAHRLSTIIHADEIL 130
T I++ H L I +AD I+
Sbjct: 857 RGNTVIVIEHNLDVIKNADHII 878
Score = 36.2 bits (82), Expect = 0.023, Method: Composition-based stats.
Identities = 31/98 (31%), Positives = 45/98 (45%), Gaps = 10/98 (10%)
Query: 43 RAILKNISFTVPAG-------KTLALLSGGEKQRVAIARTLLKAPQ--IVLLDEATSALD 93
+ I K + F V G ++ LSGGE QR+ +A + I +LDE T L
Sbjct: 439 KEIEKRLEFLVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLH 498
Query: 94 TK-TERNIQSALNRVCASRTTIIVAHRLSTIIHADEIL 130
+ TER I++ T I+V H I +AD I+
Sbjct: 499 PRDTERLIKTLKKLRDLGNTVIVVEHDEEVIRNADHII 536
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 50/95 (52%), Gaps = 9/95 (9%)
Query: 56 GKTLALLSGGEKQRVAIARTLLK-------APQIVLLDEATSALDTKTERNIQSALNRVC 108
G++ LSGGE QRV +A +L+ A Q++LLDE ++LD + + L+ +C
Sbjct: 121 GRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSALC 180
Query: 109 ASRTTIIV-AHRLS-TIIHADEILVMHAGEIVERG 141
I+ +H L+ T+ HA ++ G+ + G
Sbjct: 181 QQGLAIVXSSHDLNHTLRHAHRAWLLKGGKXLASG 215
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 41/81 (50%)
Query: 36 SFSYTPERAILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTK 95
S Y L ++ T A + LSGG++Q + IAR + +++LLDE TSALD
Sbjct: 103 SHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLA 162
Query: 96 TERNIQSALNRVCASRTTIIV 116
+ + S L + S+ +V
Sbjct: 163 NQDIVLSLLIDLAQSQNMTVV 183
>pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|B Chain B, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|C Chain C, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|D Chain D, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|E Chain E, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|F Chain F, Mycobacterium Tuberculosis Uvra
Length = 993
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 44/94 (46%), Gaps = 9/94 (9%)
Query: 57 KTLALLSGGEKQRVAIARTLLKAPQIVL--LDEATSALDTKTERNIQSALNRVCA-SRTT 113
+ A LSGGE QR+ +A + VL LDE + L + R + L R+ T
Sbjct: 517 RAAATLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTL 576
Query: 114 IIVAHRLSTIIHADEILVM------HAGEIVERG 141
I+V H TI HAD I+ + H G IV G
Sbjct: 577 IVVEHDEDTIEHADWIVDIGPGAGEHGGRIVHSG 610
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Query: 56 GKTLALLSGGEKQRVAIARTLLK---APQIVLLDEATSALDTKTERNIQSALNR-VCASR 111
G+ LSGGE QRV +A L K + +LDE T+ L R + + +N V
Sbjct: 858 GQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGN 917
Query: 112 TTIIVAHRLSTIIHADEIL 130
T I++ H L I +D I+
Sbjct: 918 TVIVIEHNLDVIKTSDWII 936
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 40.8 bits (94), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 59/104 (56%), Gaps = 7/104 (6%)
Query: 44 AILKNISFTVPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQ-- 101
A+L+ + AG+ LSGG++QR A+AR L P+++LLDE SALD + R I+
Sbjct: 121 AMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIRED 180
Query: 102 --SALNRVCASRTTIIVAH-RLSTIIHADEILVMHAGEIVERGS 142
+AL ++ + V+H R + +AD I VM G I++ S
Sbjct: 181 MIAALR--ANGKSAVFVSHDREEALQYADRIAVMKQGRILQTAS 222
Score = 34.7 bits (78), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 11/79 (13%)
Query: 130 LVMHAGEIVERGSLFVSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNI--KTVSQ 187
L + GEI LF+ +G SG GK+T++R L F +SG+I + + I K +
Sbjct: 25 LSLDPGEI-----LFI----IGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNL 75
Query: 188 ASLRQAIGVVPQDTVLFNN 206
+ +G + Q+ VLF +
Sbjct: 76 PVRERRLGYLVQEGVLFPH 94
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 38/60 (63%), Gaps = 2/60 (3%)
Query: 59 LALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAH 118
++ LSGG K ++A+AR +L+ I+LLDE T+ LDT + + LN C T+I ++H
Sbjct: 546 ISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLN-TCGI-TSITISH 603
Score = 35.8 bits (81), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
LSGG+K ++ +A + P +++LDE T+ LD + + AL II+ H
Sbjct: 902 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGG--VIIITHSAE 959
Query: 122 -TIIHADEILVMHAGEIVERGSLFVS 146
T +E+ + G + G +VS
Sbjct: 960 FTKNLTEEVWAVKDGRMTPSGHNWVS 985
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 38/60 (63%), Gaps = 2/60 (3%)
Query: 59 LALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAH 118
++ LSGG K ++A+AR +L+ I+LLDE T+ LDT + + LN C T+I ++H
Sbjct: 540 ISALSGGWKXKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLN-TCGI-TSITISH 597
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAH 118
LSGG+K ++ +A + P +++LDE T+ LD + + AL II+ H
Sbjct: 896 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGG--VIIITH 950
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 38/60 (63%), Gaps = 2/60 (3%)
Query: 59 LALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAH 118
++ LSGG K ++A+AR +L+ I+LLDE T+ LDT + + LN C T+I ++H
Sbjct: 546 ISALSGGWKXKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLN-TCGI-TSITISH 603
Score = 35.0 bits (79), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHRLS 121
LSGG+K ++ +A + P +++LDE T+ LD + + AL II+ H
Sbjct: 902 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGG--VIIITHSAE 959
Query: 122 -TIIHADEILVMHAGEIVERGSLFVS 146
T +E+ + G G +VS
Sbjct: 960 FTKNLTEEVWAVKDGRXTPSGHNWVS 985
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASR-TTIIVAH-- 118
SGGEK+R I + L+ P +LDE S LD + + +N + +++ H
Sbjct: 144 FSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQ 203
Query: 119 RLSTIIHADEILVMHAGEIVERGS 142
R+ I D++ VM G +V G
Sbjct: 204 RILNYIQPDKVHVMMDGRVVATGG 227
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 150 VGQSGAGKSTIIRLLFR--FYDVESGDIFIDNQNIKTVS 186
+G +GAGKST+ ++L Y VE G+I +D +NI +S
Sbjct: 35 MGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELS 73
>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
Length = 842
Score = 39.7 bits (91), Expect = 0.002, Method: Composition-based stats.
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 4/92 (4%)
Query: 56 GKTLALLSGGEKQRVAIARTLLKAPQ---IVLLDEATSALDTKTERNIQSALNR-VCASR 111
G+ LSGGE QR+ +A L ++ + + +LDE T+ L +Q L + V A
Sbjct: 725 GQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGN 784
Query: 112 TTIIVAHRLSTIIHADEILVMHAGEIVERGSL 143
T I V H++ + +D +L + G + G L
Sbjct: 785 TVIAVEHKMQVVAASDWVLDIGPGAGEDGGRL 816
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCA-SRTTIIVAHRL 120
LSGGE QR AI + ++ + + DE +S LD K N + + A ++ I V H L
Sbjct: 222 LSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDL 281
Query: 121 STIIHADEILVMHAG 135
S + + + + + G
Sbjct: 282 SVLDYLSDFVCIIYG 296
Score = 35.4 bits (80), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 41/77 (53%), Gaps = 5/77 (6%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNR---VCASRTTIIVAH 118
LSGGE QRVAI L I L+DE ++ LD++ +R I S + R + +T IV H
Sbjct: 468 LSGGELQRVAIVLALGIPADIYLIDEPSAYLDSE-QRIICSKVIRRFILHNKKTAFIVEH 526
Query: 119 RLSTIIH-ADEILVMHA 134
+ AD+++V
Sbjct: 527 DFIMATYLADKVIVFEG 543
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 55/99 (55%), Gaps = 17/99 (17%)
Query: 56 GKTLALLSGGEKQRVAIARTLLK-------APQIVLLDEATSALDTKTERNIQSALNRVC 108
G++ LSGGE QRV +A +L+ A Q++LLD+ ++LD QSAL+++
Sbjct: 121 GRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMNSLDVAQ----QSALDKIL 176
Query: 109 ASRTT-----IIVAHRLS-TIIHADEILVMHAGEIVERG 141
++ + ++ +H L+ T+ HA ++ G+++ G
Sbjct: 177 SALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASG 215
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 53/99 (53%), Gaps = 17/99 (17%)
Query: 56 GKTLALLSGGEKQRVAIARTLLK-------APQIVLLDEATSALDTKTERNIQSALNRVC 108
G++ LSGGE QRV +A +L+ A Q++LLDE ++LD QSAL+++
Sbjct: 121 GRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQ----QSALDKIL 176
Query: 109 ASRTT-----IIVAHRLS-TIIHADEILVMHAGEIVERG 141
++ + + +H L+ T+ HA ++ G+ + G
Sbjct: 177 SALSQQGLAIVXSSHDLNHTLRHAHRAWLLKGGKXLASG 215
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 54/99 (54%), Gaps = 17/99 (17%)
Query: 56 GKTLALLSGGEKQRVAIARTLLK-------APQIVLLDEATSALDTKTERNIQSALNRVC 108
G++ LSGGE QRV +A +L+ A Q++LLD+ +LD QSAL+++
Sbjct: 121 GRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMCSLDVAQ----QSALDKIL 176
Query: 109 ASRTT-----IIVAHRLS-TIIHADEILVMHAGEIVERG 141
++ + ++ +H L+ T+ HA ++ G+++ G
Sbjct: 177 SALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASG 215
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 37.7 bits (86), Expect = 0.007, Method: Composition-based stats.
Identities = 29/97 (29%), Positives = 46/97 (47%), Gaps = 10/97 (10%)
Query: 56 GKTLALLSGGEKQRVAIARTLLKAPQ---IVLLDEATSALDTKTERNIQSALNRVCAS-R 111
G+ LSGGE QRV +A L + + +LDE T+ L + L+R+ +
Sbjct: 840 GQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGD 899
Query: 112 TTIIVAHRLSTIIHADEILVM------HAGEIVERGS 142
T +++ H L I AD I+ + G+IV G+
Sbjct: 900 TVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGT 936
Score = 32.7 bits (73), Expect = 0.23, Method: Composition-based stats.
Identities = 28/95 (29%), Positives = 45/95 (47%), Gaps = 9/95 (9%)
Query: 57 KTLALLSGGEKQRVAIARTLLKAPQIVL--LDEATSALDTK-TERNIQSALNRVCASRTT 113
++ LSGGE QR+ +A + VL LDE + L + +R I + + T
Sbjct: 500 RSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSXRDLGNTL 559
Query: 114 IIVAHRLSTIIHADEIL------VMHAGEIVERGS 142
I+V H T + AD ++ +H GE+V G+
Sbjct: 560 IVVEHDEDTXLAADYLIDIGPGAGIHGGEVVAAGT 594
>pdb|3ZGX|A Chain A, Crystal Structure Of The Kleisin-n Smc Interface In
Prokaryotic Condensin
pdb|3ZGX|B Chain B, Crystal Structure Of The Kleisin-n Smc Interface In
Prokaryotic Condensin
Length = 426
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 39/81 (48%), Gaps = 7/81 (8%)
Query: 54 PAGKTLA---LLSGGEKQRVAIAR--TLLKAPQI--VLLDEATSALDTKTERNIQSALNR 106
P GK L LLSGGE+ AIA ++LK + +LDE +ALD L +
Sbjct: 318 PPGKKLQNLNLLSGGERALTAIALLFSILKVRPVPFCVLDEVEAALDEANVFRFAQYLKK 377
Query: 107 VCASRTTIIVAHRLSTIIHAD 127
+ I++ HR T+ AD
Sbjct: 378 YSSDTQFIVITHRKGTMEEAD 398
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 36.6 bits (83), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 47/96 (48%), Gaps = 5/96 (5%)
Query: 56 GKTLALLSGGEKQRVAIARTLLK---APQIVLLDEATSALDTKTERNIQSALNRVCASRT 112
G+ LSGGE QRV +A L + + +LDE T+ L + L+R+ +
Sbjct: 840 GQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGD 899
Query: 113 TIIV-AHRLSTIIHADEILVMHAGEIVERGSLFVSL 147
T++V H L I AD I+ + E +RG V++
Sbjct: 900 TVLVIEHNLDVIKTADYIIDL-GPEGGDRGGQIVAV 934
Score = 32.3 bits (72), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 9/95 (9%)
Query: 57 KTLALLSGGEKQRVAIARTLLKAPQIVL--LDEATSALDTK-TERNIQSALNRVCASRTT 113
++ LSGGE QR+ +A + VL LDE + L + +R I + + T
Sbjct: 500 RSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTL 559
Query: 114 IIVAHRLSTIIHADEIL------VMHAGEIVERGS 142
I+V H T++ AD ++ +H GE+V G+
Sbjct: 560 IVVEHDEDTMLAADYLIDIGPGAGIHGGEVVAAGT 594
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 35.8 bits (81), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 47/96 (48%), Gaps = 5/96 (5%)
Query: 56 GKTLALLSGGEKQRVAIARTLLK---APQIVLLDEATSALDTKTERNIQSALNRVCASRT 112
G+ LSGGE QRV +A L + + +LDE T+ L + L+R+ +
Sbjct: 538 GQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGD 597
Query: 113 TIIV-AHRLSTIIHADEILVMHAGEIVERGSLFVSL 147
T++V H L I AD I+ + E +RG V++
Sbjct: 598 TVLVIEHNLDVIKTADYIIDL-GPEGGDRGGQIVAV 632
Score = 31.6 bits (70), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 9/95 (9%)
Query: 57 KTLALLSGGEKQRVAIARTLLKAPQIVL--LDEATSALDTK-TERNIQSALNRVCASRTT 113
++ LSGGE QR+ +A + VL LDE + L + +R I + + T
Sbjct: 198 RSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTL 257
Query: 114 IIVAHRLSTIIHADEIL------VMHAGEIVERGS 142
I+V H T++ AD ++ +H GE+V G+
Sbjct: 258 IVVEHDEDTMLAADYLIDIGPGAGIHGGEVVAAGT 292
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 35.4 bits (80), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIVAHR-- 119
LSGGE+Q +AI R L P+++ DE + L + + ++ TTI++ +
Sbjct: 140 LSGGEQQXLAIGRALXSRPKLLXXDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNA 199
Query: 120 LSTIIHADEILVMHAGEIVERGS 142
L + A V+ G+IV G
Sbjct: 200 LGALKVAHYGYVLETGQIVLEGK 222
>pdb|2WST|A Chain A, Head Domain Of Porcine Adenovirus Type 4 Nadc-1 Isolate
Fibre
pdb|2WST|B Chain B, Head Domain Of Porcine Adenovirus Type 4 Nadc-1 Isolate
Fibre
pdb|2WST|C Chain C, Head Domain Of Porcine Adenovirus Type 4 Nadc-1 Isolate
Fibre
pdb|2WST|D Chain D, Head Domain Of Porcine Adenovirus Type 4 Nadc-1 Isolate
Fibre
pdb|2WST|E Chain E, Head Domain Of Porcine Adenovirus Type 4 Nadc-1 Isolate
Fibre
pdb|2WST|F Chain F, Head Domain Of Porcine Adenovirus Type 4 Nadc-1 Isolate
Fibre
Length = 208
Score = 35.0 bits (79), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 7/69 (10%)
Query: 53 VPAGKTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRT 112
VP G +A ++GG++ R+ + TL P A A T + N S + R+C SRT
Sbjct: 15 VPRGSHMASMTGGQQGRILVYPTLWTGP-------APEANVTFSGENSPSGILRLCLSRT 67
Query: 113 TIIVAHRLS 121
V LS
Sbjct: 68 GGTVIGTLS 76
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 34.3 bits (77), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 34/63 (53%)
Query: 57 KTLALLSGGEKQRVAIARTLLKAPQIVLLDEATSALDTKTERNIQSALNRVCASRTTIIV 116
K L LS G +RV +A TLL +I +LD+ A+D ++ + ++ + + +I+
Sbjct: 129 KKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVII 188
Query: 117 AHR 119
+ R
Sbjct: 189 SSR 191
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 26/45 (57%)
Query: 148 LQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQ 192
L +G +G+GKST+I ++ F + G ++ +N++I A L
Sbjct: 37 LIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYH 81
>pdb|1E69|A Chain A, Smc Head Domain From Thermotoga Maritima
pdb|1E69|B Chain B, Smc Head Domain From Thermotoga Maritima
pdb|1E69|C Chain C, Smc Head Domain From Thermotoga Maritima
pdb|1E69|D Chain D, Smc Head Domain From Thermotoga Maritima
pdb|1E69|E Chain E, Smc Head Domain From Thermotoga Maritima
pdb|1E69|F Chain F, Smc Head Domain From Thermotoga Maritima
Length = 322
Score = 30.8 bits (68), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
Query: 57 KTLALLSGGEKQRVAIARTL----LKAPQIVLLDEATSALDTKTERNIQSALNRVCASRT 112
+ L+LLSGGEK V +A +K +LDE S LD + L
Sbjct: 215 QKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQ 274
Query: 113 TIIVAH 118
I++ H
Sbjct: 275 FIVITH 280
>pdb|2QAG|C Chain C, Crystal Structure Of Human Septin Trimer 267
Length = 418
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 21/28 (75%), Gaps = 1/28 (3%)
Query: 138 VERGSLFVSLLQVGQSGAGKSTIIRLLF 165
V+RG F +L+ VG+SG GKST+I LF
Sbjct: 26 VKRGFEF-TLMVVGESGLGKSTLINSLF 52
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 44/86 (51%), Gaps = 9/86 (10%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQ-----ASLRQA--IGVVPQDTV 202
+G +G+GK+T++R + SG+IFI+ ++ + +L +A IGV D V
Sbjct: 36 LGPNGSGKTTLLRAISGLLPY-SGNIFINGMEVRKIRNYIRYSTNLPEAYEIGVTVNDIV 94
Query: 203 LFNNSIKAIQKN-FVDMENMFDLLQE 227
+K + ++ F++M L +E
Sbjct: 95 YLYEELKGLDRDLFLEMLKALKLGEE 120
>pdb|3SOP|A Chain A, Crystal Structure Of Human Septin 3 Gtpase Domain
pdb|3SOP|B Chain B, Crystal Structure Of Human Septin 3 Gtpase Domain
Length = 270
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 17/21 (80%)
Query: 146 SLLQVGQSGAGKSTIIRLLFR 166
+++ VGQSG GKST++ LF+
Sbjct: 4 NIMVVGQSGLGKSTLVNTLFK 24
>pdb|2QAG|A Chain A, Crystal Structure Of Human Septin Trimer 267
Length = 361
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 21/28 (75%), Gaps = 1/28 (3%)
Query: 138 VERGSLFVSLLQVGQSGAGKSTIIRLLF 165
V++G F +L+ VG+SG GKST+I LF
Sbjct: 32 VKKGFEF-TLMVVGESGLGKSTLINSLF 58
>pdb|4GP6|A Chain A, Polynucleotide Kinase
pdb|4GP6|B Chain B, Polynucleotide Kinase
Length = 171
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 4/45 (8%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGD----IFIDNQNIKTVSQASL 190
+G SG+GKST + F+ +V S D + D++N +TV+ A+
Sbjct: 15 IGSSGSGKSTFAKKHFKPTEVISSDFCRGLVSDDENDQTVTGAAF 59
>pdb|4GP7|A Chain A, Polynucleotide Kinase
pdb|4GP7|B Chain B, Polynucleotide Kinase
Length = 171
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 4/45 (8%)
Query: 150 VGQSGAGKSTIIRLLFRFYDVESGD----IFIDNQNIKTVSQASL 190
+G SG+GKST + F+ +V S D + D++N +TV+ A+
Sbjct: 15 IGSSGSGKSTFAKKHFKPTEVISSDFCRGLXSDDENDQTVTGAAF 59
>pdb|3T5D|A Chain A, Crystal Structure Of Septin 7 In Complex With Gdp
pdb|3T5D|C Chain C, Crystal Structure Of Septin 7 In Complex With Gdp
Length = 274
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
Query: 141 GSLF-VSLLQVGQSGAGKSTIIRLLF 165
GS F +L+ VG+SG GKST+I LF
Sbjct: 4 GSGFEFTLMVVGESGLGKSTLINSLF 29
>pdb|4EQ6|A Chain A, The Crystal Structure Of Psy3-Csm2 Complex From Budding
Yeast
Length = 214
Score = 28.1 bits (61), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 9/78 (11%)
Query: 11 TCDVIDIPQAPMLCVAQGAVEFRNVSFSYTPERA--ILKNISFTVPAGKTLALLSGGEKQ 68
T D + P +L + V FRN F +P+R+ +L++ L ++ E +
Sbjct: 103 TEDAVTEPLKIILYINGLEVMFRNSQFKSSPQRSHELLRDTLL------KLRVMGNDENE 156
Query: 69 RVAIARTLLKAPQIVLLD 86
+I RTLL+ P+ LLD
Sbjct: 157 NASI-RTLLEFPKEQLLD 173
>pdb|4DT1|A Chain A, Crystal Structure Of The Psy3-Csm2 Complex
Length = 213
Score = 28.1 bits (61), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 9/78 (11%)
Query: 11 TCDVIDIPQAPMLCVAQGAVEFRNVSFSYTPERA--ILKNISFTVPAGKTLALLSGGEKQ 68
T D + P +L + V FRN F +P+R+ +L++ L ++ E +
Sbjct: 102 TEDAVTEPLKIILYINGLEVMFRNSQFKSSPQRSHELLRDTLL------KLRVMGNDENE 155
Query: 69 RVAIARTLLKAPQIVLLD 86
+I RTLL+ P+ LLD
Sbjct: 156 NASI-RTLLEFPKEQLLD 172
>pdb|1II5|A Chain A, Crystal Structure Of The Glur0 Ligand Binding Core
Complex With L- Glutamate
Length = 233
Score = 27.7 bits (60), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 20 APMLCVAQGAVEFRNVSFSYTPERAILKNISFTVP 54
A + VA+G ++ S TPERA ++ I+FT P
Sbjct: 56 AGITAVAEGELDILIGPISVTPERAAIEGITFTQP 90
Score = 27.7 bits (60), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 237 APMLCVAQGAVEFRNVSFSYTPERAILKNISFTVP 271
A + VA+G ++ S TPERA ++ I+FT P
Sbjct: 56 AGITAVAEGELDILIGPISVTPERAAIEGITFTQP 90
>pdb|2DFS|A Chain A, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|M Chain M, 3-D Structure Of Myosin-V Inhibited State
Length = 1080
Score = 27.7 bits (60), Expect = 6.5, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 26/50 (52%)
Query: 146 SLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQASLRQAIG 195
S++ G+SGAGK+ + R++ SG N K ++ + ++IG
Sbjct: 158 SIIVSGESGAGKTVSAKYAMRYFATVSGSASEANVEEKVLASNPIMESIG 207
>pdb|1IIT|A Chain A, Glur0 Ligand Binding Core Complex With L-Serine
pdb|1IIW|A Chain A, Glur0 Ligand Binding Core: Closed-Cleft Ligand-Free
Structure
Length = 232
Score = 27.7 bits (60), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 20 APMLCVAQGAVEFRNVSFSYTPERAILKNISFTVP 54
A + VA+G ++ S TPERA ++ I+FT P
Sbjct: 56 AGITAVAEGELDILIGPISVTPERAAIEGITFTQP 90
Score = 27.7 bits (60), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 237 APMLCVAQGAVEFRNVSFSYTPERAILKNISFTVP 271
A + VA+G ++ S TPERA ++ I+FT P
Sbjct: 56 AGITAVAEGELDILIGPISVTPERAAIEGITFTQP 90
>pdb|3TW4|A Chain A, Crystal Structure Of Human Septin 7 Gtpase Domain
pdb|3TW4|B Chain B, Crystal Structure Of Human Septin 7 Gtpase Domain
Length = 271
Score = 27.7 bits (60), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 16/20 (80%)
Query: 146 SLLQVGQSGAGKSTIIRLLF 165
+L+ VG+SG GKST+I LF
Sbjct: 5 TLMVVGESGLGKSTLINSLF 24
>pdb|3FTQ|A Chain A, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
pdb|3FTQ|B Chain B, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
pdb|3FTQ|C Chain C, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
pdb|3FTQ|D Chain D, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
Length = 274
Score = 27.7 bits (60), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 16/20 (80%)
Query: 146 SLLQVGQSGAGKSTIIRLLF 165
+L+ VG+SG GKST+I LF
Sbjct: 7 TLMVVGESGLGKSTLINSLF 26
>pdb|2QA5|A Chain A, Crystal Structure Of Sept2 G-Domain
pdb|2QA5|B Chain B, Crystal Structure Of Sept2 G-Domain
Length = 315
Score = 27.3 bits (59), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Query: 138 VERGSLFVSLLQVGQSGAGKSTIIRLLF 165
V++G F +L VG+SG GKST+I LF
Sbjct: 32 VKKGFEF-TLXVVGESGLGKSTLINSLF 58
>pdb|2QNR|A Chain A, Human Septin 2 In Complex With Gdp
pdb|2QNR|B Chain B, Human Septin 2 In Complex With Gdp
Length = 301
Score = 27.3 bits (59), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Query: 138 VERGSLFVSLLQVGQSGAGKSTIIRLLF 165
V++G F +L VG+SG GKST+I LF
Sbjct: 13 VKKGFEF-TLXVVGESGLGKSTLINSLF 39
>pdb|4HTE|A Chain A, Crystal Structure Of The C-terminal Domain Of Nicking
Enzyme From Staphylococcus Aureus
Length = 353
Score = 27.3 bits (59), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 63/147 (42%), Gaps = 27/147 (18%)
Query: 62 LSGGEKQRVAIARTLLKAPQIVLLDEATSAL-DTKTERNIQSA---LNRVCASRTTIIVA 117
L+ + +++ I RT+L ++ A + L D E+ I+ A LN V +R
Sbjct: 105 LNYSDDEKIFITRTILNDRDVLP---ANNELEDIVKEKRIKEAQISLNTVLGNRDI---- 157
Query: 118 HRLSTIIHADEILVMHAGEIVERGSL-FVSLLQVGQSGAGKSTIIRL------LFR---- 166
L +I A I+E+ +L F +L+ G S I +FR
Sbjct: 158 -SLESIAAASNFFADKLSNILEKNNLSFDDVLENKHEGXEDSLKIDYYTNKLEVFRNAEN 216
Query: 167 ----FYDVESGDIFIDNQNIKTVSQAS 189
+YDV+ ++F D+++ K ++ +
Sbjct: 217 ILEDYYDVQIKELFTDDEDYKAFNEVT 243
>pdb|2P5T|B Chain B, Molecular And Structural Characterization Of The Pezat
Chromosomal Toxin-Antitoxin System Of The Human Pathogen
Streptococcus Pneumoniae
pdb|2P5T|D Chain D, Molecular And Structural Characterization Of The Pezat
Chromosomal Toxin-Antitoxin System Of The Human Pathogen
Streptococcus Pneumoniae
pdb|2P5T|F Chain F, Molecular And Structural Characterization Of The Pezat
Chromosomal Toxin-Antitoxin System Of The Human Pathogen
Streptococcus Pneumoniae
pdb|2P5T|H Chain H, Molecular And Structural Characterization Of The Pezat
Chromosomal Toxin-Antitoxin System Of The Human Pathogen
Streptococcus Pneumoniae
Length = 253
Score = 27.3 bits (59), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 60/128 (46%), Gaps = 11/128 (8%)
Query: 145 VSLLQVGQSGAGKSTIIRLLFRFYDVESGDIFIDNQNIKTVSQA--SLRQAIGVVPQDTV 202
+++L GQSGAGK+TI R+ + + + + ID + ++ L+Q G +D+V
Sbjct: 33 IAILLGGQSGAGKTTIHRIKQK--EFQGNIVIIDGDSFRSQHPHYLELQQEYG---KDSV 87
Query: 203 LFNNSI--KAIQKNFVDMENM-FDLLQE-TCDVIDIPQAPMLCVAQGAVEFRNVSFSYTP 258
+ K ++ + ++ ++LL E T +D+P+ + E + + P
Sbjct: 88 EYTKDFAGKMVESLVTKLSSLGYNLLIEGTLRTVDVPKKTAQLLKNKGYEVQLALIATKP 147
Query: 259 ERAILKNI 266
E + L +
Sbjct: 148 ELSYLSTL 155
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.135 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,058,042
Number of Sequences: 62578
Number of extensions: 258871
Number of successful extensions: 1220
Number of sequences better than 100.0: 130
Number of HSP's better than 100.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 880
Number of HSP's gapped (non-prelim): 318
length of query: 277
length of database: 14,973,337
effective HSP length: 98
effective length of query: 179
effective length of database: 8,840,693
effective search space: 1582484047
effective search space used: 1582484047
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)